/gannet/Atumefaciens/20190103_metagenomics_geo_metagenemark MetaGeneMark gene prediction on singular MEGAHIT assembly: https://robertslab.github.io/sams-notebook/2019/01/02/Metagenome-Assembly-P.generosa-Water-Sample-HiSeqX-Data-Using-Megahit.html MetaGeneMark was run on Mox. NOTE: MetaGeneMark produces horribly formatted FastA files which will generally require some "cleaning" prior to using in downstream applications. --- FILES - 20190103_metagenomics_geo_metagenemark.sh: SBATCH job script for running on Mox. - 20190103-mgm.gff3: GFF file output. - 20190103-mgm-nucleotides.fa: Nucleotide gene predictions FastA. - 20190103-mgm-proteins.fa: Protein predictions FastA. - slurm-557621.out: SLURM output file (i.e. stderr/stdout). - system_path.log: Contents of Sam's Mox system $PATH. --- Notebook: https://robertslab.github.io/sams-notebook/2019/01/03/Gene-Prediction-HiSeqX-Metagenomics-from-Geoduck-Water-Using-MetaGeneMark-on-Mox.html