/gannet/Atumefaciens/20190102_metagenomics_geo_megahit/megahit_out/quast_results/results_2019_01_03_13_37_3

Metagenomic assembly of Panopea generosa water samples using Megahit, run on Mox.

Output folder for Quast analysis of Megahit assembly.

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FILES

- basic_stats: Directory of Quast stats in PDF form.

- icarus.html: Combined HTML interface for viewing Quast report.html file and icarus_viewers/contig_size_viewer.html
 file.

- icarus_viewers: Contains contig_size_viewer.html for reference by icarus.html file.

- quast.log: Log file generated by Quast with run info.

- report.html: Quast HTML file for viewing assembly stats.

- report.pdf: Quast PDF file of assembly stats.

- report.tex: Quast TEX file of assembly stats.

- report.tsv: Quast tab-separated file of assembly stats.

- report.txt: Quast text file of assembly stats.

- transposed_report.tex: Quast TEX file transposed.

- transposed_report.tsv: Quast tab-separated file transposed.

- transposed_report.txt: Quast text fle transposed.


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Notebook:

https://robertslab.github.io/sams-notebook/2019/01/02/Metagenome-Assembly-P.generosa-Water-Sample-HiSeqX-Data-Using-Megahit.html