/home/sam/software/quast-4.5/quast.py --threads=20 --min-contig=100 --labels=meta_megahit_assembly /mnt/gannet/Atumefaciens/20190102_metagenomics_geo_megahit/megahit_out/final.contigs.fa

Version: 4.5, 15ca3b9

System information:
  OS: Linux-4.4.0-139-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64)
  Python version: 2.7.12
  CPUs number: 24

Started: 2019-01-03 13:37:32

Logging to /home/sam/quast_results/results_2019_01_03_13_37_32/quast.log

CWD: /home/sam
Main parameters: 
  Threads: 20, minimum contig length: 100, ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  /mnt/gannet/Atumefaciens/20190102_metagenomics_geo_megahit/megahit_out/final.contigs.fa ==> meta_megahit_assembly

2019-01-03 13:40:30
Running Basic statistics processor...
  Contig files: 
    meta_megahit_assembly
  Calculating N50 and L50...
    meta_megahit_assembly, N50 = 1413, L50 = 308641, Total length = 2243059881, GC % = 39.32, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /home/sam/quast_results/results_2019_01_03_13_37_32/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/sam/quast_results/results_2019_01_03_13_37_32/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/sam/quast_results/results_2019_01_03_13_37_32/basic_stats/GC_content_plot.pdf
  Drawing meta_megahit_assembly GC content plot...
    saved to /home/sam/quast_results/results_2019_01_03_13_37_32/basic_stats/meta_megahit_assembly_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2019-01-03 13:42:59
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2019-01-03 13:43:59
RESULTS:
  Text versions of total report are saved to /home/sam/quast_results/results_2019_01_03_13_37_32/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/quast_results/results_2019_01_03_13_37_32/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /home/sam/quast_results/results_2019_01_03_13_37_32/report.html
  PDF version (tables and plots) is saved to /home/sam/quast_results/results_2019_01_03_13_37_32/report.pdf
  Icarus (contig browser) is saved to /home/sam/quast_results/results_2019_01_03_13_37_32/icarus.html
  Log saved to /home/sam/quast_results/results_2019_01_03_13_37_32/quast.log

Finished: 2019-01-03 13:43:59
Elapsed time: 0:06:26.952382
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!