lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888 333333 4444 4444 4444 1 3333333333333333333333333333333333333333333 333333 111 333 111 222 1
lowQualScore : 999999999999999999999 777777 4 4444 2222 4444 3 66 3 6 6 5555555555555555555555555555555555555555555 0 0 6 1 999999 999 2 111 333 3 222 2 2 3
lowQualScore : ..................... ...... . .... .... .... . .. . . . ........................................... . . . . ...... ... . ... ... . ... . . .
lowQualScore : 555555555555555555555 555555 0 5555 5555 0000 0 55 3 7 7 3333333333333333333333333333333333333333333 2 7 7 0 000000 888 3 000 777 6 555 4 5 6
consensus : TAATTT---TACCAAATTTGCNGTCATAGCAACCACAATTNTTTGTANGGCTGGAAAAAATAATGAAATGACCCGNCATNANNTCCTTA-TTNCTCTCTATCAACGTGCGAAGTTTCACGA---CA-CTTTGATACTTTTT-AGTAAT------TTTCCAGATGGACGCCAGACG----AACA--GATGGACG-NAGGGTAAACCTA-TAGTC-CCCTNCGGTGAAACCGGTAGGGG-ACTAATA
Reference ( gi|1 ) : TAATTTCCTTACCAG-CTTACAG--ATAGCAATCACAATTTTTTGTCTGACTGAAAAAA----TAAAATGACCTGT-ATTATCTCCTTA-TTGCTCTCTATCCACATGCAAAAGTTCACAACCCTAGCTTGAATACTTTTTGAGTAATT-----TTTCCAGATGGACGCCAAATG----AACA--AATGGATG-TTGGGTAAACCTA-TGGTC-CCTAACAGTGAAACCAGTATGGG-ACTAATA
gi|4 : TAATTT---TACCAAATTTATTGTCATAGCAACCAC--TTTTTT---CGACTGAAAAAAATAATGAAATAACTCAG-ATGAAGTCCTTA-TTGCTCTTTATTCACGTGCAAAGTTTCACAAATGCAGCTTTGATACTTTTTGTGTAA----------CCAAATG
gi|3 : TTGCAA--A-AGCAA-CA-AATTATTTGTAAGGCTGGAAAAA----TAAAATGACC-GTCATTATCTCCTTATTTTTTCTCTATCAACATGCAA-----------------------ATTTTTTTAGTAATA-----TTTCCGTACGGACGCCAGACGGACTGACA--GAGGGACG-TCGGG
gi|2 : A-TTCCCGTCTATCAACATGTGAAGTTTCATGAC--TA-CTTTAATGC------AG-AATTCATATTTTCTAGATAGACAC-AAA------AACATGGATGGATG-AAATGTAAACCTA-AAGTC-CTCTATGCTGAAACCAGTACGAG-ACAAATAcgga
gi|5 : aataacttttgtaatgtttaaCAGATGGACAACAGATG----AACA--GATGCATG----GTTGAACCTA-AAACC-CCCTTCAGTGAAAGCAGTAGGGA-ACTAA
gi|7 : tgACA--GATGGATA-GAGAATAAGCCTA-TAGTCACCTC-CAGTAAAACCAGTAACGA-ACTAATA
gi|12 : ATGGA-----GGATAACCCTA-TAGTC-CCATACAGTGAAATGGGC-TGAGTACTAATA
gi|15 : gGGATG-GAGGGTAAATCTA-AAGTC-TCTA-CGGTGTAACCAGTAGGGG-ACTAAa
gi|8 : GGACGATCGGGCAAACCTA-AAGTT-CCCAGCAGTAAAAGCGGTAATGG-ACTAATAa
gi|9 : cGGGTAAACCTA-TAGTT-CCTTACGGTGAAACCCGTAGGGT-GCTAATaa
gi|11 : cagttggaGGGTAAACCTA-TAGTC-TGTTCCAG-GAAACCTGTAGGGG-ACTAACAgaca
gi|13 : cagacagaGGGTAAACCTAATAGTC-CCCTCTGGTGAAACTGATAGGGA-ACTAATA
gi|10 : atagaGGTAAACCTA-TAGTC-CCTTAAGGTGAAACCGGTAAGGG-ACTAACA
gi|14 : gacggacggaaGGTAAACCTAATAGTC-CCCTCTGGTGAAACTGATAGGGA-ACTAATA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GGACAGATGTCAGACCAACGAAGGGTAAAGCTATAGTCCCGTCTGATGAAACTAGCAGGGATAAG
Unaligned ( gi|16 ): GCTTCGATACTTTTCGAGTAATATATTTTTAAATAATCTTTCTGGCCGGA
Unaligned ( gi|17 ): GCTTTGATACTTTTCGAGTAATATTTTTTTAAATAATCTTTCTGGCCAGA
Unaligned ( gi|18 ): TTGGATATTTTTCGGGTACTTAATCTTTCCGGACAG
Alignments
lowQualScore : 333 1 11 11 1111 1 11 22 1 1 666666666666666666666666666 222 111111 222222
lowQualScore : 555 5 6 1 88 6 44 1 3333 0 2 7 11 6 44 1 22 0 1 3 2 0 3 555555555555555555555555555 777 444444 8 888888 77 55 6 2 1 1
lowQualScore : ... . . . .. . .. . .... . . . .. . .. . .. . . . . . . ........................... ... ...... . ...... .. .. . . . .
lowQualScore : 000 5 0 0 00 7 00 0 7777 7 0 3 00 7 33 0 00 0 0 0 0 5 2 555555555555555555555555555 000 222222 8 000000 99 00 2 6 0 2
consensus : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGT-CGACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACG----AACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
Reference ( family-9956 ) : TAATTT---TACCAAATTTGCNGTCATAGCAACCACAATTNTTTGTANGGCTGGAAAAAATAATGAAATGACCCGNCATNANNTCCTTA-TTNCTCTCTATCAACGTGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACG----AACA--GATGGACGN-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
gi|1 : TAATTTCCTTACCAG-CTTACAG--ATAGCAATCACAATTTTTTGTCTGACTG-AAAAAATAA---AATGACCTGT-ATTATCTCCTTA-TTGCTCTCTATCCACATGCAAAAGTTCACAA---C-C-CTAGCTTGAATAC----TTTTTGA-GTAAT-TTTTCCAGATGGACGCCAAATG----AACA--AATGGATGT-TGGGTAAACCTA-TGGTCCCTAACAGTGAAACCAGTATGGGACTAATA
gi|10 : --GACGGACGG-AAGGTAAACCTA-TAGTCCCTTAAGGTGAAACCGGTAAGGGACTAACA
gi|11 : GACAG-AGGGTAAACCTA-TAGTCTGTTCCAG-GAAACCTGTAGGGGACTAACA
gi|12 : caGATGG-AGGATAACCCTA-TAGTCCCATACAGTGAAATGGGCTGAGTACTAATA
gi|13 : -AGGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATAa
gi|14 : atag-AAGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATA
gi|15 : tagGGATGG-AGGGTAAATCTA-AAGTCTC-TACGGTGTAACCAGTAGGGGACTAA
gi|2 : A-TTCCCGTCTATCAACATGTGAAGTTTCATGA---CTA-CT---TTAA-TGCAGAATTCAT------AT-TTT-CTAGATAGACA-CAAA------AACATGGATGGATGA-AATGTAAACCTA-AAGTCCTCTATGCTGAAACCAGTACGAGACAAATAa
gi|3 : aataacttttgtaatgtttaaAGCAAC-A-AATTATTTGTAAGGCTGGAAA----AATAAAATGA-CCGTCATTATCTCCTTATTTTTTCTCTATCAACATGC-AAATT------------------------------TTTTT-A-GTAATATTT-CCGTACGGACGCCAGACGGACTGACA--GAGGGACGT-CGGG
gi|4 : ttgcaaaTAATTT---TACCAAATTTATTGTCATAGCAACCAC--TTTTTT---CGACTGAAAAAAATAATGAAATAACTCAG-ATGAAGTCCTTA-TTGCTCTTTATTCACGTGCAAAGTTTCACAAATGC-AGCT---TTGA-TAC----TTTTT-GTGTAA------CCAAATGcgga
gi|5 : CAGATGGACAACAGATG----AACA--GATGCAT----GGTTGAACCTA-AAACCCCCTTCAGTGAAAGCAGTAGGGAACTAA
gi|6 : tgCA--GACCAACGA-AGGGTAAAGCTA-TAGTCCCGTCTGATGAAACTAGCAGGG
gi|7 : ggacagatgtACA--GATGGATAG-AGAATAAGCCTA-TAGTCACCTCCAGTAAAACCAGTAACGAACTAATAataag
gi|8 : GGACGATCGGGCAAACCTA-AAGTTCCCAGCAGTAAAAGCGGTAATGGACTAATA
gi|9 : cGG-AGGGTAAACCTA-TAGTTCCTTACGGTGAAACCCGTAGGGTGCTAATaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTTCGATACTTTTCGAGTAATATATTTTTAAATAATCTTTCTGGCCGGA
Unaligned ( gi|17 ): GCTTTGATACTTTTCGAGTAATATTTTTTTAAATAATCTTTCTGGCCAGA
Unaligned ( gi|18 ): TTGGATATTTTTCGGGTACTTAATCTTTCCGGACAG
Alignments
lowQualScore : 222 1 11 11 2 1 111111 1111 1 1 666666666666666666666666666 222 111111 1
lowQualScore : 000 5 1 88 6 44 6 6 2 555555 9999 0 1 1 0 3 555555555555555555555555555 777 444444 8 0 77 1 2 6 2 1 1
lowQualScore : ... . . .. . .. . . . ...... .... . . . . . ........................... ... ...... . . .. . . . . . .
lowQualScore : 555 5 0 00 7 00 7 7 0 333333 7777 0 0 0 5 2 555555555555555555555555555 000 222222 8 5 99 0 9 2 6 0 2
consensus : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
Reference ( family-9956 ) : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
gi|1 : TAATTTCCTTACCAG-CTTACAG--ATAGCAATCACAATTTTTTGTCTGACTG-AAAAAATAA---AATGACCTGT-ATTATCTCCTTA-TTGCTCTCTATCCACATGCAAAAGTTCACAA---C-C-CTAGCTTGAATAC----TTTTTGA-GTAAT-TTTTCCAGATGGACGCCAAATGAACA--AATGGATGT-TGGGTAAACCTA-TGGTCCCTAACAGTGAAACCAGTATGGGACTAATA
gi|10 : --GACGGACGG-AAGGTAAACCTA-TAGTCCCTTAAGGTGAAACCGGTAAGGGACTAACA
gi|11 : CAGACAG-AGGGTAAACCTA-TAGTCTGTTCCAG-GAAACCTGTAGGGGACTAACA
gi|12 : GATGG-AGGATAACCCTA-TAGTCCCATACAGTGAAATGGGCTGAGTACTAATA
gi|13 : G-AGGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATAa
gi|14 : ataG-AAGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATA
gi|15 : taGGATGG-AGGGTAAATCTA-AAGTCTC-TACGGTGTAACCAGTAGGGGACTAA
gi|2 : A-TTCCCGTCTATCAACATGTGAAGTTTCATGA---CTA-CT---TTAA-TGCAGAATTCAT------AT-TTT-CTAGATAGACA-CAAA--AACATGGATGGATGA-AATGTAAACCTA-AAGTCCTCTATGCTGAAACCAGTACGAGACAAATAa
gi|3 : aataacttttgtaatgtttaaAGCAAC-A-AATTATTTGTAAGGCTGGAAAAA----TAAAATGACC-GTCATTATCTCCTTATTTTTTCTCTATCAACATGC-AAATT------------------------------TTTTT-A-GTAATATTT-CCGTACGGACGCCAGACGGACT--GACAGAGGG-A
gi|4 : ttgcaaaTAATTT---TACCAAATTTATTGTCATAGCAACCAC---TTTTT-TC-GACTGAAAAAAATAATGAAATAACTCAG-ATGAAGTCCTTA-TTGCTCTTTATTCACGTGCAAAGTTTCACAAATGC-AGCT---TTGA-TAC----TTTTT-GTGTAA------CCAAATGcgtcgggcgga
gi|5 : CAGATGGACAACAGATGAACA--GATGCAT----GGTTGAACCTA-AAACCCCCTTCAGTGAAAGCAGTAGGGAACTAA
gi|6 : tgCA--GACCAACGA-AGGGTAAAGCTA-TAGTCCCGTCTGATGAAACTAGCAGGG
gi|7 : ggacagatgtACA--GATGGATAG-AGAATAAGCCTA-TAGTCACCTCCAGTAAAACCAGTAACGAACTAATAataag
gi|8 : CGGACGATCGGGCAAACCTA-AAGTTCCCAGCAGTAAAAGCGGTAATGGACTAATA
gi|9 : GG-AGGGTAAACCTA-TAGTTCCTTACGGTGAAACCCGTAGGGTGCTAATaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTTCGATACTTTTCGAGTAATATATTTTTAAATAATCTTTCTGGCCGGA
Unaligned ( gi|17 ): GCTTTGATACTTTTCGAGTAATATTTTTTTAAATAATCTTTCTGGCCAGA
Unaligned ( gi|18 ): TTGGATATTTTTCGGGTACTTAATCTTTCCGGACAG
Alignments
lowQualScore : 222 1 11 11 2 1 111111 1111 1 1 666666666666666666666666666 222 111111 1
lowQualScore : 000 5 1 88 6 44 6 6 2 555555 9999 0 1 1 0 3 555555555555555555555555555 777 444444 8 0 77 1 2 6 2 1 1
lowQualScore : ... . . .. . .. . . . ...... .... . . . . . ........................... ... ...... . . .. . . . . . .
lowQualScore : 555 5 0 00 7 00 7 7 0 333333 7777 0 0 0 5 2 555555555555555555555555555 000 222222 8 5 99 0 9 2 6 0 2
consensus : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
Reference ( family-9956 ) : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
gi|1 : TAATTTCCTTACCAG-CTTACAG--ATAGCAATCACAATTTTTTGTCTGACTG-AAAAAATAA---AATGACCTGT-ATTATCTCCTTA-TTGCTCTCTATCCACATGCAAAAGTTCACAA---C-C-CTAGCTTGAATAC----TTTTTGA-GTAAT-TTTTCCAGATGGACGCCAAATGAACA--AATGGATGT-TGGGTAAACCTA-TGGTCCCTAACAGTGAAACCAGTATGGGACTAATA
gi|10 : --GACGGACGG-AAGGTAAACCTA-TAGTCCCTTAAGGTGAAACCGGTAAGGGACTAACA
gi|11 : CAGACAG-AGGGTAAACCTA-TAGTCTGTTCCAG-GAAACCTGTAGGGGACTAACA
gi|12 : GATGG-AGGATAACCCTA-TAGTCCCATACAGTGAAATGGGCTGAGTACTAATA
gi|13 : G-AGGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATAa
gi|14 : ataG-AAGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATA
gi|15 : taGGATGG-AGGGTAAATCTA-AAGTCTC-TACGGTGTAACCAGTAGGGGACTAA
gi|2 : A-TTCCCGTCTATCAACATGTGAAGTTTCATGA---CTA-CT---TTAA-TGCAGAATTCAT------AT-TTT-CTAGATAGACA-CAAA--AACATGGATGGATGA-AATGTAAACCTA-AAGTCCTCTATGCTGAAACCAGTACGAGACAAATAa
gi|3 : aataacttttgtaatgtttaaAGCAAC-A-AATTATTTGTAAGGCTGGAAAAA----TAAAATGACC-GTCATTATCTCCTTATTTTTTCTCTATCAACATGC-AAATT------------------------------TTTTT-A-GTAATATTT-CCGTACGGACGCCAGACGGACT--GACAGAGGG-A
gi|4 : ttgcaaaTAATTT---TACCAAATTTATTGTCATAGCAACCAC---TTTTT-TC-GACTGAAAAAAATAATGAAATAACTCAG-ATGAAGTCCTTA-TTGCTCTTTATTCACGTGCAAAGTTTCACAAATGC-AGCT---TTGA-TAC----TTTTT-GTGTAA------CCAAATGcgtcgggcgga
gi|5 : CAGATGGACAACAGATGAACA--GATGCAT----GGTTGAACCTA-AAACCCCCTTCAGTGAAAGCAGTAGGGAACTAA
gi|6 : tgCA--GACCAACGA-AGGGTAAAGCTA-TAGTCCCGTCTGATGAAACTAGCAGGG
gi|7 : ggacagatgtACA--GATGGATAG-AGAATAAGCCTA-TAGTCACCTCCAGTAAAACCAGTAACGAACTAATAataag
gi|8 : CGGACGATCGGGCAAACCTA-AAGTTCCCAGCAGTAAAAGCGGTAATGGACTAATA
gi|9 : GG-AGGGTAAACCTA-TAGTTCCTTACGGTGAAACCCGTAGGGTGCTAATaa
blockSeqs : . A T TC C A G A G ATAATG GTC T C A G T TGACTACTTTAATGCAGAA GT TATTT C C TG C T A T A G
blockSeqs : . C . . A TA CAG . T A A T CAAATGCAGCTTTGATAC A TTTT A T . C . A T C T
blockSeqs : . G C . . . . . . . . T . . A A G
blockSeqs : . T . . C C G
blockSeqs : . T . . C C G
blockSeqs : . G . . C A A
blockSeqs : T . . C A A
blockSeqs : C . . G T A
blockSeqs : T . . C C A
blockSeqs : C . . C C A
blockSeqs : . . T G G
blockSeqs : . . . A C
blockSeqs : .
blockSeqCons :
originalCons : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
finalCons : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTTCGATACTTTTCGAGTAATATATTTTTAAATAATCTTTCTGGCCGGA
Unaligned ( gi|17 ): GCTTTGATACTTTTCGAGTAATATTTTTTTAAATAATCTTTCTGGCCAGA
Unaligned ( gi|18 ): TTGGATATTTTTCGGGTACTTAATCTTTCCGGACAG
Alignments
lowQualScore : 222 1 11 11 2 1 111111 1111 1 1 666666666666666666666666666 222 111111 1
lowQualScore : 000 5 1 88 6 44 6 6 2 555555 9999 0 1 1 0 3 555555555555555555555555555 777 444444 8 0 77 1 2 6 2 1 1
lowQualScore : ... . . .. . .. . . . ...... .... . . . . . ........................... ... ...... . . .. . . . . . .
lowQualScore : 555 5 0 00 7 00 7 7 0 333333 7777 0 0 0 5 2 555555555555555555555555555 000 222222 8 5 99 0 9 2 6 0 2
consensus : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
Reference ( family-9956 ) : TAATTTCCTTACCAGACTTACNGTCATAGCAACCACAATTTTTTGTC-GACTGGAAAAAATAATGAAATGACCCGT-ATTATCTCCTTA-TTNCTCTCTATCNACATGCGAAGTTTCACGA---C-A-CT---TTGA-TAC----TTTTT-A-GTAAT-TTT-CCAGATGGACGCCAGACGAACA--GACGGACGG-AGGGTAAACCTA-TAGTCCCCTNCGGTGAAACCGGTAGGGGACTAATA
gi|1 : TAATTTCCTTACCAG-CTTACAG--ATAGCAATCACAATTTTTTGTCTGACTG-AAAAAATAA---AATGACCTGT-ATTATCTCCTTA-TTGCTCTCTATCCACATGCAAAAGTTCACAA---C-C-CTAGCTTGAATAC----TTTTTGA-GTAAT-TTTTCCAGATGGACGCCAAATGAACA--AATGGATGT-TGGGTAAACCTA-TGGTCCCTAACAGTGAAACCAGTATGGGACTAATA
gi|10 : --GACGGACGG-AAGGTAAACCTA-TAGTCCCTTAAGGTGAAACCGGTAAGGGACTAACA
gi|11 : CAGACAG-AGGGTAAACCTA-TAGTCTGTTCCAG-GAAACCTGTAGGGGACTAACA
gi|12 : GATGG-AGGATAACCCTA-TAGTCCCATACAGTGAAATGGGCTGAGTACTAATA
gi|13 : G-AGGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATAa
gi|14 : ataG-AAGGTAAACCTAATAGTCCCCTCTGGTGAAACTGATAGGGAACTAATA
gi|15 : taGGATGG-AGGGTAAATCTA-AAGTCTC-TACGGTGTAACCAGTAGGGGACTAA
gi|2 : A-TTCCCGTCTATCAACATGTGAAGTTTCATGA---CTA-CT---TTAA-TGCAGAATTCAT------AT-TTT-CTAGATAGACA-CAAA--AACATGGATGGATGA-AATGTAAACCTA-AAGTCCTCTATGCTGAAACCAGTACGAGACAAATAa
gi|3 : aataacttttgtaatgtttaaAGCAAC-A-AATTATTTGTAAGGCTGGAAAAA----TAAAATGACC-GTCATTATCTCCTTATTTTTTCTCTATCAACATGC-AAATT------------------------------TTTTT-A-GTAATATTT-CCGTACGGACGCCAGACGGACT--GACAGAGGG-A
gi|4 : ttgcaaaTAATTT---TACCAAATTTATTGTCATAGCAACCAC---TTTTT-TC-GACTGAAAAAAATAATGAAATAACTCAG-ATGAAGTCCTTA-TTGCTCTTTATTCACGTGCAAAGTTTCACAAATGC-AGCT---TTGA-TAC----TTTTT-GTGTAA------CCAAATGcgtcgggcgga
gi|5 : CAGATGGACAACAGATGAACA--GATGCAT----GGTTGAACCTA-AAACCCCCTTCAGTGAAAGCAGTAGGGAACTAA
gi|6 : tgCA--GACCAACGA-AGGGTAAAGCTA-TAGTCCCGTCTGATGAAACTAGCAGGG
gi|7 : ggacagatgtACA--GATGGATAG-AGAATAAGCCTA-TAGTCACCTCCAGTAAAACCAGTAACGAACTAATAataag
gi|8 : CGGACGATCGGGCAAACCTA-AAGTTCCCAGCAGTAAAAGCGGTAATGGACTAATA
gi|9 : GG-AGGGTAAACCTA-TAGTTCCTTACGGTGAAACCCGTAGGGTGCTAATaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTTCGATACTTTTCGAGTAATATATTTTTAAATAATCTTTCTGGCCGGA
Unaligned ( gi|17 ): GCTTTGATACTTTTCGAGTAATATTTTTTTAAATAATCTTTCTGGCCAGA
Unaligned ( gi|18 ): TTGGATATTTTTCGGGTACTTAATCTTTCCGGACAG