lowQualScore : 1111111111111111111 111111111111111111111111111111111111111111 11111111111111 11111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 4444 3333 3333333333 6666666666666666666666666 44444444444444 11111 3333 1 1 0000000000000000000 1 1111 22222 4444 1 666666666666666666 1 444444444444444444444444444444444444444444 1 1 1 222 1 2222 22222 3333333 11 11 111111 00000000000000 1 00000000000000 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 0 2 2 8888 5 3333 2222 8888 5 0000000000 1 9999999999999999999999999 99999999999999 5 77 22222 8 1111 1 7 7 1 2 5 2 55 5 5 7777777777777777777 0 5 7 8 6666 8 5 00000 2222 0 666666666666666666 8 2 6 6 555555555555555555555555555555555555555555 7 5 2 111 7 6 0000 6 33333 6 2222222 6 33 33 3 888888 44444444444444 2 4 88 5 33333333333333 6 44 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 66
lowQualScore : . . . .... . .... .... .... . .......... . ......................... .............. . .. ..... . .... . . . . . . . .. . . ................... . . . . .... . . ..... .... . .................. . . . . .......................................... . . . ... . . .... . ..... . ....... . .. .. . ...... .............. . . .. . .............. . .. . ........................................................................................................................... ..
lowQualScore : 5 5 5 6666 7 9999 1111 3333 7 2222222222 0 4444444444444444444444444 55555555555555 7 99 55555 2 0000 4 5 5 0 3 1 0 55 0 2 8888888888888888888 6 0 8 0 2222 0 8 22222 8888 0 999999999999999999 3 3 7 7 333333333333333333333333333333333333333333 0 0 0 555 0 0 7777 7 77777 7 5555555 0 88 88 5 555555 55555555555555 5 0 55 0 55555555555555 3 33 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55
consensus : TANAGNGGTANTTTTTAN-CTTCATCATTTTT-CGAATG--GCGGGAGCATAA----AA--A-CA-GAC---------AGGATGATTT----------G--------------TTATATAG--------TC-AAGGA-TCA--CTT-----TACTTCCTGATCGGAACGT---AGATTCGCTACTGATGCAGGTTACTGTATAGTGACCAGGAAATAGACAGCAAGACTGTGATTTAATTCGTGAATCGGAAA-----TTG--TTATGAATGTTTGTACGCTGCT-T--CGATAA-AANACG----TTTATCTTA-CC-TTCCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGAAATATACACAGCT---ACA------GC----TGCAAC----A---TTN------TGTAATGAAATTGTGCGATAGCGAGAAGCNNTATAGTATATATCGTGACCCCGATTTGCAACNT-TTGGCACTACGATTAGT-------TAATGCTG--CTTAA--TNACACTGNAT--TGATATNCGACAAACAANNTGGCTATNTGNACNTCGTGTGTATTGATGAGCTTNGCACATTTGTATTACTNCGCGCTATGC---AT----TTATCNCTGA-G-AT--GCGT-A-TTNATGC--AATACGCTT--TTAATTATAT--ACTAGTTATC-A-TTAACTACAATCTGCATATTGCATGCNNTGACGTTANCA-TTAGAAGCCACGGAGNNACGTTTTGT
Reference ( gi|3 ) : TATAGGGATACTTTTTAT-CTTCATCATTTTT-CGAA-A--GCGGGAGCATAA---CAA--A-CA-GAT---------AGGATGATTT----------G--------------TTATATAT--------TC-ATGGA-TCA--CTT-----TACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAA-----ATG--TT-------TTTTTATGCTGCT-T--CAACAA-AAAACG----TTTATCGTG-CC-TTCCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATATACACAGC----ACA------GC----TGCAAC----A---TTA------TGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGT-ATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT--------ATTCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGCATAATGATGTTATCGTCAAAGGATAAACGTCAATTAATGCTTAATCCATTT--TTAATTATATATACTAATTATTTATTTATCTACAATCTATAT-TTG-AT--TTTGATG-TAACATTTCAAAGCCACGAAACTACGTTTTGTT
gi|6 : TAGAGCGATACTTTTATT-CTTCGACATTTGT-CTAATG--GCGGGAACATAA---AAA--A-CA-GAC---------AGTATCACTT----------AAAATTCAGACTAGTTTAAATGTAAGAG---CC-AATGA-TCA--TTT-----TATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|18 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACAGGGGTAATTTTACC-CGTCATCATGTTT-TGAATA--GTGGGAGCAT-A---CAA--AGTA-GAC---------AGGATTACTT----------
gi|4 : TTTTATCCTCCATCCTTTTT-TCAA-ATGGAGGGAGTATAA----AA--A-CA-
gi|2 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacatgaataaTAA-CTTTATCATTTTT-CGAATG--GCCGGAACATAA----AA--A-CA-GAC---------AGGATGATTT----------G--------------ataatttaatctcagaatagcttcaacgttaaagccatatatagatatatagtcaagggtcactttacttcctgatcggaacgttgctttgctactgatgtaggttacttatagaggacaggaaatagacaagactgtgatttaaatcatgaattggaaaatgttatgaatgtgtgtacgctgcttctataaaatacgtaagaccgatttcctaatccgtaataaatgttt
gi|1 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTAA-CTTTATCATTTTT-CGAATG--GCCGGAACATAA----AA--A-CA-GAC---------AGGATGATTT----------G--------------aaactcagaatagtttaaacatttgagccagatatatagatatatagtcaaggatcactttatttcctgatcagaatgtaaaaaattcgctactgatgcaggttactgtatagtgac
gi|7 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaAT-TTTCATCGTTTTTTCGAATG--GCGGGAGCAAAAAAACAACAA-CA-GAC---------AGGATGATTT----------G--------------aaactcagaatagtttaaacatttgagccagatatatagatatatagtcaaggatcactttatttcctgatcagaatgtaaaaaattcgctactgatgcaggttactgtatagtgac
gi|11 : -CTTTATCATTTTT-CGAATG--GCGGAAGCATAA----AA--T-CATTATTGTAAACTCAGAATAGTTTAAACGTTCGAG--------------TCATATATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGGGCA-------------ACTGATTCAGGTTA--ATATAAaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtagactgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|5 : TATATA--------------GAA-TCA--CTT-----TACTTCCTGATCGGAACGT---AGATTTAC-------------TACT-------GACAAGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAA-----TTG--TTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCAT--CC-TTCCGATGTAAACGTTTAAAATGGTAAAAGAAAA-CGAAATATACACAGCT---GCA------GCGACCTTCACC----AGAATCC------TGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTT-TAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATATAC--------AAATAGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTGT------------TACCGC----GGATAAGCGTCATTTTATACCTATTACATTT--TTAATTATATTTATTAGTTATCGAATTAACTACag
gi|4 : gttcaaacgttagaaccagaTATATAG--------TC-AAGGG-TCA--CTT-----TACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAA-----ATG--TTATGAATGTGTGTACGCTGCT-T--CTATAA-AATACG----T
gi|2 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacatgaataattttatcctccatccttttttcaaatggagggagtataaaaacaataatttaatctcagaatagcttcaacgttaaagccatatatagaTATATAG--------TC-AAGGA-TCA--CTT-----TATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACaagaccgatttcctaatccgtaataaatgttt
gi|1 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataactttatcatttttcgaatggccggaacataaaaacagacaggatgatttgaaactcagaatagtttaaacatttgagccagatatatagaTATATAG--------TC-AAGGA-TCA--CTT-----TATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGAC
gi|7 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataactttatcatttttcgaatggccggaacataaaaacagacaggatgatttgaaactcagaatagtttaaacatttgagccagatatataga--------TC-AAGGA-TCA--CGT-----TACTGCCTGATTAGAACGT---AGACT
gi|10 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtgg-----TACTTCCTTATCTAA-TGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAA-----TTA--TTATGAATGTTTGCACGCTGCT-T--C--CAC-AAAAC-----CTTATC----CT-TCCCCATGCAAACGTTTgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAA-----TTG--TTATGAATGTGTGTAGGCTGAT-T--CGATAA-AACACG----TTTATCTTATCC-TTCCCGTGCAA------------------AATAGCCGAAATATACACAGCTGGAACAATCTTTAC----TG-AAC--------TTG------TATAATGAAATTGTGCAATAGCGAGA
gi|7 : AGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATT-------TTTGTACGCTGCT-T--CGATAG-AACACG----ATTATCTTA-TCATTCCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTA-C----ACA------GC----TGTAACCTTTA---CTAAAATCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAtacga
gi|17 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtTAATATACATTGTGACCACGATTTGTAACCT-TTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACTT
gi|16 : gTATCGTGACCCTGACTTGCAACGTTATG-CACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGA
gi|8 : ATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATT-GACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGC--AAT----TTAT-ACTAA---AT--ACGT-AA-TAATGT---ATCTGCTGGATTAACCATA---ACTA----------------CAATCTACATATTG-ATGCTTT--CG-TAA------GAAGCCACGAAAATACATTTT
gi|12 : CACTTGTATTACTTTGCTCTACGCATTATGATGTTATCTTTGAAG------------TTGA-----AACACACTT--TAAATTATGTAAACTAATTATCTATTTAATTACA----GTAT-TTACAT--AATGATGTTATCA-TTAAAAGCCACAGAGCAACGTTTTGT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|15 ): AAACAAACAGGGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATAAATTATATAGTTTATTATCACTTTAC
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333 999999999999999999999999999999999999999999999999999999999 111 1111111 1111 2222 666666666666666666666666666666 2222222 11 11 11 7777777777777 999999999999 2222222222222222222222222222222222222222222222222222222222 11 111 11 1 111 2222222 111111 55555555555555555555
lowQualScore : 1 1 0 1 1 5 5 5 5 5 444444 5 5555555555555555555 0 333333333333333333333333333333333333333333333333333333333 555 3 0 7 0 0 4444444 1 1 9999 8 0 5 8 0 4444 2 3 1111 888888888888888888888888888888 1 2 2 22 4 0 1 4 6 6666666 11 11 1 11 33 2222222222222 0 1 1 1 333333333333 3 1 1 7 7777777777777777777777777777777777777777777777777777777777 3 33 444 33 0 111 9999999 999999 7 00000000000000000000 0 0 222
lowQualScore : . . . . . . . . . . ...... . ................... . ......................................................... ... . . . . . ....... . . .... . . . . . .... . . .... .............................. . . . .. . . . . . ....... .. .. . .. .. ............. . . . . ............ . . . . .......................................................... . .. ... .. . ... ....... ...... . .................... . . ...
lowQualScore : 0 0 7 0 0 0 0 0 0 0 444444 0 0000000000000000000 2 888888888888888888888888888888888888888888888888888888888 666 1 1 6 3 6 3333333 0 0 2222 0 8 0 8 2 8888 5 0 2222 555555555555555555555555555555 0 5 0 00 2 8 0 0 5 0000000 00 00 0 22 88 3333333333333 7 0 0 0 333333333333 7 2 0 0 5555555555555555555555555555555555555555555555555555555555 5 88 555 88 0 000 0000000 333333 3 33333333333333333333 7 7 777
consensus : TANAGGGATACTTTTTATCTTC-ATCATTTT-T-CGAATGGCGGGAGCATA-A-A------AA-CA-------G-A---------CAGGATGATTT-AA----------GTT---A----------------TATA-----------------GTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCC-TTCCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCT---GCA------GC--C-TGC-AACA---TCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA--AT-CGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGCCGA--AAT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACAATCTGCATATTN-AT--TTTGACG-TA-CA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TANAGNGGTANTTTTTANCTTC-ATCATTTT-T-CGAATGGCGGGAGCATA-A-A------AA-CA-------G-A---------CAGGATGATTT-------------GTT---A----------------TATA-----------------GTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTCGCTACTGATGCAGGTTACTGTATAGTGACCAGGAAATAGACAGCAAGACTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAANACGTTTATCTTA-CC-TTCCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGAAATA----TACACAGCT---ACA------GC----TGC-AACA---TTNTGTAATGAAATTGTGCGATAGCGAGAAGCNNTATAGTATATATCGTGACCCCGATTTGCAACNTTTGGCACTACGATTAGT-------TAATGCTG--CTTAA--TNACACTGNAT--TGATATNCGACAAACAANNTGGCTATNTGNACNTCGTGTGTATTGATGAGCTTNGCACATTTGTATTACTNCGCGCTATGC-AT-------T-------TATCNCTGA--GAT--GCGT--A-TTNATGC--AATACGCTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACAATCTGCATATTGCATGCNNTGACGTTANCA-TTAGAAGCCACGGAGNNACGTTTTGT
gi|1 : TAACTTT-ATCATTTT-T-CGAATGGCCGGAACATA-A-A------AA-CA-------G-A---------CAGGATGATTT-------------G
gi|1 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaT---A----------------TATA-----------------GTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACaaactcagaatagtttaaacatttgagccagatatatagatatatagtcaaggatcactttatttcctgatcagaatgtaaaaaattcgctactgatgcaggttactgtatagtgac
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataactttatcatttttcgaatggccggaacataaaaacagacaggatgatttgaaactcagaatagtttaaacatttgagccagatatatagaTACTTCCTTATCT-AATGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC---CTTATC----CT-TCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTT-T-CGAATGGCGGAAGCATA-A-A------AT-CATTATTGTA-AACT------CAGAATAGTTTAAACGTTCGA---GTC---A----------------TATATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGG-------------GCAACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGC-AT-------TATGATGTTATCTTTGA--AGT--------------TGA--AACACACTTTAAAT--TATG--TAAACTAA-TT-A-TCT-A-TTTAATTACA----GTAT-TTACAT--AATGATGTTATCA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGActga
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTT-T-TGAATAGTGGGAGCATACA-A------AG-TA-------G-A---------CAGGATTACTT-------------t
gi|2 : TAACTTT-ATCATTTT-T-CGAATGGCCGGAACATA-A-A------AA-CA-------G-A---------CAGGATGATTT-------------G
gi|2 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaT---A----------------TATA-----------------GTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACaaactcagaatagtttaaacatttgagccagatatatagatatatagtcaaggatcactttatttcctgatcagaatgtaaaaaattcgctactgatgcaggttactgtatagtgac
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataactttatcatttttcgaatggccggaacataaaaacagacaggatgatttgaaactcagaatagtttaaacatttgagccagatatatagaTATAGGGATACTTTTTATCTTC-ATCATTTT-T-CGAA-AGCGGGAGCATA-ACA------AA-CA-------G-A---------TAGGATGATTT-------------GTT---A----------------TATA-----------------TTCATGGATCACTTTACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CC-TTCCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC----ACA------GC----TGC-AACA---TTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT--------ATTCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGC-ATAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TT-ATTT--ATTT-ATCTACAATCT--ATATTTGAT--TTTGATG-TAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TTTTATCCTCCATCCTTTT-TTCAAATGGAGGGAGTATA-A-A------AA-CA-------ATAATTTAATCTCAGAATAGCTTCAAC---------GTT---AAAGCCATATATAGATATATA-----------------GTCAAGGGTCACTTTACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacatgaataaAGAATCACTTTACTTCCTGATCGGAACGT---AGATTTACTACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCC-TTCCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCT---GCA------GCGACCTTC-ACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA-----TAGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGA--TAA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TT-A-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : gttcaaacgttagaaccagatatatTAGAGCGATACTTTTATTCTTC-GACATTTG-T-CTAATGGCGGGAACATA-A-A------AAACA-------G-A---------CAGTATCACTTAAAATTCAGACTAGTTTAAA----------------TGTAAGA--------------GCCAATGATCATTTTATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTT-CGAATGGCGGGAGCAAA-A-AAACAACAA-CA-------G-A---------CAGGATGATTT-------------G
gi|7 : ---A----------------TGTG-----------------GTCAAGGATCACGTTACTGCCTGATTAGAACGT---AGACTaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtagactgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|7 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacAGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTA-TCATTCCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCT---GTA------ACCTT-TACTAAAA---TCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|8 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAAT-TGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TAT-ACT-A--AAT--ACGT--A-ATAATG-------------------TATC--TG--CTGGATTAA-CC--A--T-AACTACAATCTACATATTG-ATGCTTT--CG-TA------AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCC-TTCCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTAC----TG--AAC----TTGTATAATGAAATTGTGCAATAGCGAGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|15 ): AAACAAACAGGGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATAAATTATATAGTTTATTATCACTTTAC
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111111 2222 66666666666666666666666 2222222 11 11 11 44444444444 66666666666 1 999999999999999999999999999999999999999999999999999999 11 111 11 1 3333333333 11 11 6666666666
lowQualScore : 1 2 7 0 5 5 5 66 5 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 5 2 22 0 7777777 4 2 5 0 7 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 88888888888888888888888 1 1 4 0 1 1 1 6666666 11 11 1 00 33 99999999999 0 33333333333 1 1 0 0 222222222222222222222222222222222222222222222222222222 0 3 33 444 33 0 7777777777 88 6 7 1 88 0000000000
lowQualScore : . . . . . . . .. . ................................................................................................................................ ... . . .. . ....... . . . . . ....... . . . . . . . . .... . . .... . . ....................... . . . . . . . ....... .. .. . .. .. ........... . ........... . . . . ...................................................... . . .. ... .. . .......... .. . . . .. ..........
lowQualScore : 0 5 8 6 0 0 0 99 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 888 0 5 00 8 4444444 4 5 8 9 2 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 88888888888888888888888 0 0 2 8 0 0 0 0000000 00 00 0 55 88 77777777777 7 33333333333 0 2 2 5 222222222222222222222222222222222222222222222222222222 8 5 88 555 88 0 8888888888 33 0 3 0 33 0000000000
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTT-T-CGAATGGCGGGAGCAT--A-A----A------AA-CA-------G----A-C-----------CAGGAT-GGTTT-A--------AA--T--GA------------GNT---A----------------TAT-----------------A---G-TCAAGGATCACTTTACTTCCTGATCGGAACGT---AG--ATTTGCT-ACTGATGCAGGTTACTGTATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGAC-----C--TGC-AACA---TCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGCA-T-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TTA-TC--A-TT-AACTACA--ATCTACATATTGAT--TTTG-CGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TANAGGGATACTTTTTATCTTC-ATCATTTT-T-CGAATGGCGGGAGCAT--A-A----A------AA-CA-------G----A-------------CAGGAT-GATTT-A--------A--------------------GTT---A----------------TAT-----------------A---G-TCAAGGATCACTTTACTTCCTGATCGGAACGT---AG--ATTTGCT-ACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGC--------C--TGC-AACA---TCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA--ATCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGCA-T-------T-------TATCGCCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TTA-TC--A-TT-AACTACA--ATCTGCATATTNAT--TTTGACGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTT-T-CGAATGGCCGGAACAT--A-AAAACA------GA-CA-------G----GATGATTTGAAACTCAGAAT-AGTTT-A--------AACATTTGAGCCAGATATATAGAT---A----------------TAT-----------------A---G-TCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAA--ATTCGCT-ACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AG--ATGTGTT-ACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTT-T-CGAATGGCGGAAGCAT--A-A----A------AT-CATTATTGTA----AACT----------CAGAAT-AGTTT-AAACGTTCGA--------------------GTC---A----------------TATATATAGGTAATCTATAAA---G-TCAAGCTTCCCTTTACTTCCTGGTCGGG---------------GCA-ACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGCA-T-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TTA-TCT-A-TTTAATTACAGTATTTACATAATGAT--GTTA---T--CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGActga
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTT-T-TGAATAGTGGGAGCAT--ACA----A------AG-TA-------G----A-------------CAGGAT-TACTT-t
gi|2 : TAACTTT-ATCATTTT-T-CGAATGGCCGGAACAT--A-AAAACA------GA-CA-------G----GATGATTTGAAACTCAGAAT-AGTTT-A--------AACATTTGAGCCAGATATATAGAT---A----------------TAT-----------------A---G-TCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAA--ATTCGCT-ACTGATGCAGGTTACTGTATAGTGAC
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTT-T-CGAA-AGCGGGAGCAT--A-AC---A------AA-CA-------G----A-------------TAGGAT-GATTT-------------------------------GTT---A----------------TAT-----------------A---T-TCATGGATCACTTTACTTCCTGATCGGAGCGT---TG--ATTTGCT-ACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAG---------C--TGC-AACA---TTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGCA-TAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TTATTT--ATTT-ATCTACA--ATCTATAT-TTGAT--TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTT-TTCAAATGGAGGGAGTATAAA-A----AC-----AA-TA-------ATTTAATCT----------CAGAATAGCTTC-A--------AC-------------------GTT---AAAGCCATATATAGATATAT-----------------A---G-TCAAGGGTCACTTTACTTCCTGATCGGAACGT---TG--CTTTGCT-ACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng--------A--------------------GAT---A----------------TAT-----------------A---G------AATCACTTTACTTCCTGATCGGAACGT---AG--ATTTACT-ACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGAC-----C--TTC-ACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA----TAGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TTA-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : gttcaaacgttagaaccTAGAGCGATACTTTTATTCTTC-GACATTTG-T-CTAATGGCGGGAACAT--A-A----A------AAACA-------G----A-------------CAGTAT-CACTT-A--------AAATTCAGACTA---------GTTTAAA----------------TGT-----------------AAGAG-CCAATGATCATTTTATTTCCTGATCGAAACGT---AG--ATTTGCT-ACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTT-CGAATGGCGGGAGCAA--A-A----AAACAACAA-CA-------G----A-------------CAGGAT-GATTTGA--------A--------------------ACT---AAG--------------AAT-----------------A---GTTTAA-----ACGTTAGAGCAAGATC----TAT---AGACATGTGGTCAAGGAT-CACGTTACTGC---CTGATTAGAACGTAGAC--------TGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTAAC--------CTTTACTAAAA---TCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATA
gi|8 : ATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A-T-AATG-------------------TATC--TG--CTGGATTAACC--A-T--AACTACA--ATCTACATATTGATGCTTT--CGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTAC--TG--AAC----TTGTATAATGAAATTGTGCAATAGCGAGATACGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|15 ): AAACAAACAGGGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATAAATTATATAGTTTATTATCACTTTAC
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111111 2222 55555555555555555555 2222222 11 11 11 4444444444444 66666666666 8888888888888888888888888888888888888888888888888888888888 11 111 11 1 111 2222222 11 11 5555555555
lowQualScore : 0 1 7 0 5 0 5 5 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 2 22 0 555 66 4 2 5 0 7 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 00000000000000000000 1 1 4 0 1 1 1 6666666 11 11 1 00 33 2222222222222 33333333333 1 1 0 8888888888888888888888888888888888888888888888888888888888 0 3 33 444 33 0 111 9999999 88 7 77 4444444444
lowQualScore : . . . . . . . . . ............................................................................................................ . . .. . ... .. . . . . . ....... . . . . . . . . .... . . .... . . .................... . . . . . . . ....... .. .. . .. .. ............. ........... . . . .......................................................... . . .. ... .. . ... ....... .. . .. ..........
lowQualScore : 2 0 8 6 0 0 0 0 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 5 00 8 666 11 4 5 4 2 2 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 55555555555555555555 0 0 2 8 0 0 0 0000000 00 00 0 55 88 3333333333333 33333333333 0 2 2 8888888888888888888888888888888888888888888888888888888888 8 5 88 555 88 0 000 0000000 33 3 33 7777777777
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-A-AAA-C--------AG-------ACAG-AT-A-TT-AAA-TC--AGAATAGTTTAAAC-TTCG--------------AGN------------TATAT-----------------AGTC-AAGGATCACTTTACTTCCTGATCGGAACGT---AGA--TTTGCT-ACTGATGCAGGTTACTGTATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACT-AACA---TCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTTN-TGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-A-AAA-C--------AG-------AC----------------C--AGGATGGTTTAAA----TG--------------AGN------------TATAT-----------------AGTC-AAGGATCACTTTACTTCCTGATCGGAACGT---AGA--TTTGCT-ACTGATGCAGGTTACTGTATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACC--TGC--AACA---TCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-TTTG-CGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-A-AAA-C--------AG-------ACAGGATGATTTGAAACTC--AGAATAGTTTAAACATTTG--------------AGCCAGATATATAGATATAT-----------------AGTC-AAGGATCACTTTATTTCCTGATCAGAATGTAAAAAA--TTCGCT-ACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AGA--TGTGTT-ACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTTT-CGAATGGCGGAAGCATA-A-AAT-CATTATTGTAA-------ACT---------------C--AGAATAGTTTAAACGTTCG--------------AGT------------CATATATATAGGTAATCTATAAAGTC-AAGCTTCCCTTTACTTCCTGGTCGGG---------------GCA-ACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGC-AT-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TT-A-TCT-A-TTTAATTACAGTATTTACATAATGAT-GTTA-T----CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGActga
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTTT-TGAATAGTGGGAGCATACA-AAG-T--------AG-------A-----------------C--AGGATt
gi|2 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-A-AAA-C--------AG-------ACAGGATGATTTGAAACTC--AGAATAGTTTAAACATTTG--------------AGCCAGATATATAGATATAT-----------------AGTC-AAGGATCACTTTATTTCCTGATCAGAATGTAAAAAA--TTCGCT-ACTGATGCAGGTTACTGTATAGTGACtactt
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTTT-CGAA-AGCGGGAGCATA-ACAAA-C--------AG-------AT-------------------AGGATGATTT------------------------GT------------TATAT-----------------ATTC-ATGGATCACTTTACTTCCTGATCGGAGCGT---TGA--TTTGCT-ACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAG----C--TGC--AACA---TTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGC-ATAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TT-ATTT--ATTT-ATCTACA--ATCTATAT-TTGAT-TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTTTTCAAATGGAGGGAGTATA-A-AAA-C--------AATAATTTAAT----------------CTCAGAATAGCTTCAA----CGTTAAAGCCATATATAGA------------TATAT-----------------AGTC-AAGGGTCACTTTACTTCCTGATCGGAACGT---TGC--TTTGCT-ACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGTTAGAA----CC--------------AGA------------TATAT-----------------AG------AATCACTTTACTTCCTGATCGGAACGT---AGA--TTTACT-ACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGACC--TTC--ACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA---T-AGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TT-A-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : gttcaaacTAGAGCGATACTTTTATTCTTC-GACATTTGT-CTAATGGCGGGAACATA-A-AAAAC--------AG-------ACAGTATCACTTAAAATTC--AGACTAGTTTAAA----TG-----------------------------TA-AG-----------------AGCC-AATGATCATTTTATTTCCTGATCGAAACGT---AGA--TTTGCT-ACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTTCGAATGGCGGGAGCAAA-A-AAA-C--------AACA-----ACAGA-------------C--AGGATGATTTGAAAC--TA--------------AGA---------------AT-----------------AGTTTAA-----ACGTTAGAGCAAGATC----TAT---AGACATGTGGTCAAGGAT-CACGTTACTGCCT---GATTAGAACGTAGAC--------TGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTA---ACCTTTACT-AAAA---TCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATA
gi|8 : ATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A--TAATG-------------------TATC--TG--CTGGATTAA-CC--A--T-AACTACA--ATCTACATATTGATGCTTT-CGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTACTGAAC----TTGTATAATGAAATTGTGCAATAGCGAGATACGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|15 ): AAACAAACAGGGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATAAATTATATAGTTTATTATCACTTTAC
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 7777777777777777777777777777777 33333333333333333333333333333333333333333333333333333333333333333 111 1111111 2222 111 11 2222222 11 11 11 4444444444444 66666666666 8888888888888888888888888888888888888888888888888888888888 11 111 11 1 111 2222222 11 11 4444444444
lowQualScore : 0 1 7 0 5 0 5 5 9999999999999999999999999999999 0 88888888888888888888888888888888888888888888888888888888888888888 555 0 7 0 0 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 555 0 77 55 1 1 4 0 1 1 1 6666666 11 11 1 00 33 2222222222222 33333333333 1 1 0 8888888888888888888888888888888888888888888888888888888888 0 3 33 444 33 0 111 9999999 88 7 44 7777777777
lowQualScore : . . . . . . . . ............................... . ................................................................. ... . . . . ....... . . . . . . . . .... . . .... . . ... . .. .. . . . . . . . ....... .. .. . .. .. ............. ........... . . . .......................................................... . . .. ... .. . ... ....... .. . .. ..........
lowQualScore : 2 0 8 6 0 0 0 0 6666666666666666666666666666666 1 44444444444444444444444444444444444444444444444444444444444444444 666 1 6 3 6 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 555 2 00 88 0 0 2 8 0 0 0 0000000 00 00 0 55 88 3333333333333 33333333333 0 2 2 8888888888888888888888888888888888888888888888888888888888 8 5 88 555 88 0 000 0000000 33 3 33 3333333333
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-ATGAT----TTGAA-AC-TCAGAATAGTTTAAACGTTNG------------A-----------GN------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACT-AANATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-AT-AT----T--AA-A--TCAGAATAGTTTAAAC-TTCG------------A-----------GN------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTGTATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACT-AACATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-NTGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-ATGAT----TTGAA-AC-TCAGAATAGTTTAAACATTTGAGCCAGATATATA-----------GA------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTTT-CGAATGGCGGAAGCATA-AAAT-CA------T-------T-ATTG--T--AA-AC-TCAGAATAGTTTAAACGTTCG------------A-----------GT------CATA------TATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGG-------------GCAACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGC-AT-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TT-A-TCT-A-TTTAATTACAGTATTTACATAATGAT-GTT-AT----CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGActga
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTTT-TGAATAGTGGGAGCATACAAAG-TA------GACA-G-G--AT----T--At
gi|2 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-ATGAT----TTGAA-AC-TCAGAATAGTTTAAACATTTGAGCCAGATATATA-----------GA------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACctt
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTTT-CGAA-AGCGGGAGCATA-A----CA------AACA-G-AT-A-----------------GGATGATTT---------------------------------GT------TATA------T-----------------ATTCATGGATCACTTTACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAGC------TGC--AACATTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGC-ATAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TT-ATTT--ATTT-ATCTACA--ATCTATAT-TTGAT-TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTTTTCAAATGGAGGGAGTATA-AAAA-CA-------ATA---AT--T----T--AATC--TCAGAATAGCTTCAAC-GTTA------------AAGCCATATATAGA------TATA------T-----------------AGTCAAGGGTCACTTTACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGTTCAAACGTTAG------------AACCA-------GA------TATA------T-----------------AG-----AATCACTTTACTTCCTGATCGGAACGT---AGATTTACTACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGACCTTCACC-AGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA---T-AGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TT-A-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : TAGAGCGATACTTTTATTCTTC-GACATTTGT-CTAATGGCGGGAACATA-AAAAACA------GACA-G--T-ATCACTT--AA-AATTCAGACTAGTTTAAAT------------------------------G------TA-A------G-----------------AGCCAATGATCATTTTATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTTCGAATGGCGGGAGCAAA-AAAA-CAACAACAGACA-GGATGAT----TTGAA-AC-TAAGAATAGTTTAAACGTTAG------------A-----------GCAAGATCTATAGACATGT-----------------GGTCAAGGATCACGTTACTGCCTGATTAGAACGT---AGACT
gi|7 : AGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTA---ACCTTTACT-AAAATCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|8 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A--TAATG-------------------TATC--TG--CTGGATTAA-CC--A--T-AACTACA--ATCTACATATTGATGCTT-TCGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTACTGAAC-TTGTATAATGAAATTGTGCAATAGCGAGATACGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|15 ): AAACAAACAGGGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATAAATTATATAGTTTATTATCACTTTAC
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111 2222 111 2222222 11 11 11 4444444444444 66666666666 1 888888888888888888888888888888888888888888888888888888 11 111 11 1 3333333333 11 11 4444444444
lowQualScore : 0 1 7 0 5 0 5 4 888888888888888 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 5 0 0 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 555 0 7 1 1 1 4 0 1 1 1 6666666 11 11 1 00 33 2222222222222 33333333333 1 1 0 0 888888888888888888888888888888888888888888888888888888 0 3 33 444 33 0 7777777777 88 7 44 6666666666
lowQualScore : . . . . . . . . ............... . . .................................................................................. ... . . . . ....... . . . . . . . . .... . . .... . . ... . . . . . . . . . . ....... .. .. . .. .. ............. ........... . . . . ...................................................... . . .. ... .. . .......... .. . .. ..........
lowQualScore : 2 0 8 6 0 0 0 4 888888888888888 7 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 666 1 7 3 6 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 555 2 0 0 0 0 2 8 0 0 0 0000000 00 00 0 55 88 3333333333333 33333333333 0 2 2 5 888888888888888888888888888888888888888888888888888888 8 5 88 555 88 0 8888888888 33 3 33 0000000000
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGCA-T-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TTA-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAANATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGCA-T-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TTA-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTTT-CGAATGGCGGAAGCATA-AAAT-C--------------A-TTATTGTAAACTCAGAATAGTTTAAACGTT-----------------CG------------A----G------T----------CATA------TATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGG-------------GCAACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGCA-T-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TTA-TCT-A-TTTAATTACAGTATTTACATAATGAT-GTT-AT----CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|15 : AAA-CA------AACA-G-GGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATA------------A----A------T----------TATA------T-----------------AGTTTATTATCACTTTACctga
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGA
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTTT-TGAATAGTGGGAGCATACAAAG-TA------GACA-G----GATTt
gi|2 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACactt
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTTT-CGAA-AGCGGGAGCATA-A----CA------AACA-G-A-T------------AGGATGATTT-------------------------------------------G------T----------TATA------T-----------------ATTCATGGATCACTTTACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAGC------TGC-AACATTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGCA-TAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TTATTT--ATTT-ATCTACA--ATCTATAT-TTGAT-TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTTTTCAAATGGAGGGAGTATA-AAAA-CA-------------A-TAATTT-AATCTCAGAATAGCTTCAACGTT-----------------AA------------A----G------CCATATATAGATATA------T-----------------AGTCAAGGGTCACTTTACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGTTCAAACGTT-----------------AG------------AACCAG------A----------TATA------T-----------------AG-----AATCACTTTACTTCCTGATCGGAACGT---AGATTTACTACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGACCTTCACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA---T-AGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TTA-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : TAGAGCGATACTTTTATTCTTC-GACATTTGT-CTAATGGCGGGAACATA-AAAAACA------GACA-GTA-TCACTTAAAATTCAGACTAGTTTAAATGTA-----------------AG------------A----G------C-----------------------------------------CAATGATCATTTTATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTTCGAATGGCGGGAGCAAA-AAAA-CAACAACAGACA-GGA-TGATTTGAAACTAAGAATAGTTTAAACGTT-----------------AG------------A----GCAAGATC----------TATAGACATGT-----------------GGTCAAGGATCACGTTACTGCCTGATTAGAACGT---AGACT
gi|7 : AGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTA---ACCTTTACTAAAATCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|8 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A-T-AATG-------------------TATC--TG--CTGGATTAACC--A-T--AACTACA--ATCTACATATTGATGCTT-TCGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTACTGAACTTGTATAATGAAATTGTGCAATAGCGAGATACGA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111 2222 111 2222222 11 11 11 4444444444444 66666666666 8888888888888888888888888888888888888888888888888888888888 11 111 11 1 111 2222222 11 11 4444444444
lowQualScore : 0 1 7 0 5 0 5 4 888888888888888 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 5 0 0 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 555 0 7 1 1 4 0 1 1 1 6666666 11 11 1 00 33 2222222222222 33333333333 1 1 0 8888888888888888888888888888888888888888888888888888888888 0 3 33 444 33 0 111 9999999 88 7 44 6666666666
lowQualScore : . . . . . . . . ............... . . .................................................................................. ... . . . . ....... . . . . . . . . .... . . .... . . ... . . . . . . . . . ....... .. .. . .. .. ............. ........... . . . .......................................................... . . .. ... .. . ... ....... .. . .. ..........
lowQualScore : 2 0 8 6 0 0 0 4 888888888888888 7 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 666 1 7 3 6 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 555 2 0 0 0 2 8 0 0 0 0000000 00 00 0 55 88 3333333333333 33333333333 0 2 2 8888888888888888888888888888888888888888888888888888888888 8 5 88 555 88 0 000 0000000 33 3 33 0000000000
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTTT-CGAATGGCGGAAGCATA-AAAT-C--------------A-TTATTGTAAACTCAGAATAGTTTAAACGTT-----------------CG------------A----G------T----------CATA------TATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGG-------------GCAACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGC-AT-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TT-A-TCT-A-TTTAATTACAGTATTTACATAATGAT-GTT-AT----CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|15 : AAA-CA------AACA-G-GGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATA------------A----A------T----------TATA------T-----------------AGTTTATTATCACTTTACctga
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGA
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTTT-TGAATAGTGGGAGCATACAAAG-TA------GACA-G----GATTt
gi|2 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACactt
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTTT-CGAA-AGCGGGAGCATA-A----CA------AACA-G-A-T------------AGGATGATTT-------------------------------------------G------T----------TATA------T-----------------ATTCATGGATCACTTTACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAGC------TGC-AACATTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGC-ATAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TT-ATTT--ATTT-ATCTACA--ATCTATAT-TTGAT-TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTTTTCAAATGGAGGGAGTATA-AAAA-CA-------------A-TAATTT-AATCTCAGAATAGCTTCAACGTT-----------------AA------------A----G------CCATATATAGATATA------T-----------------AGTCAAGGGTCACTTTACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGTTCAAACGTT-----------------AG------------AACCAG------A----------TATA------T-----------------AG-----AATCACTTTACTTCCTGATCGGAACGT---AGATTTACTACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGACCTTCACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA---T-AGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TT-A-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : TAGAGCGATACTTTTATTCTTC-GACATTTGT-CTAATGGCGGGAACATA-AAAAACA------GACA-GTA-TCACTTAAAATTCAGACTAGTTTAAATGTA-----------------AG------------A----G------C-----------------------------------------CAATGATCATTTTATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTTCGAATGGCGGGAGCAAA-AAAA-CAACAACAGACA-GGA-TGATTTGAAACTAAGAATAGTTTAAACGTT-----------------AG------------A----GCAAGATC----------TATAGACATGT-----------------GGTCAAGGATCACGTTACTGCCTGATTAGAACGT---AGACT
gi|7 : AGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTA---ACCTTTACTAAAATCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|8 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A--TAATG-------------------TATC--TG--CTGGATTAA-CC--A--T-AACTACA--ATCTACATATTGATGCTT-TCGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTACTGAACTTGTATAATGAAATTGTGCAATAGCGAGATACGA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111 2222 111 2222222 11 11 11 4444444444444 66666666666 8888888888888888888888888888888888888888888888888888888888 11 111 11 1 111 2222222 11 11 4444444444
lowQualScore : 0 1 7 0 5 0 5 4 888888888888888 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 5 0 0 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 555 0 7 1 1 4 0 1 1 1 6666666 11 11 1 00 33 2222222222222 33333333333 1 1 0 8888888888888888888888888888888888888888888888888888888888 0 3 33 444 33 0 111 9999999 88 7 44 6666666666
lowQualScore : . . . . . . . . ............... . . .................................................................................. ... . . . . ....... . . . . . . . . .... . . .... . . ... . . . . . . . . . ....... .. .. . .. .. ............. ........... . . . .......................................................... . . .. ... .. . ... ....... .. . .. ..........
lowQualScore : 2 0 8 6 0 0 0 4 888888888888888 7 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 666 1 7 3 6 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 555 2 0 0 0 2 8 0 0 0 0000000 00 00 0 55 88 3333333333333 33333333333 0 2 2 8888888888888888888888888888888888888888888888888888888888 8 5 88 555 88 0 000 0000000 33 3 33 0000000000
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTTT-CGAATGGCGGAAGCATA-AAAT-C--------------A-TTATTGTAAACTCAGAATAGTTTAAACGTT-----------------CG------------A----G------T----------CATA------TATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGG-------------GCAACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGC-AT-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TT-A-TCT-A-TTTAATTACAGTATTTACATAATGAT-GTT-AT----CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|15 : AAA-CA------AACA-G-GGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATA------------A----A------T----------TATA------T-----------------AGTTTATTATCACTTTACctga
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGA
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTTT-TGAATAGTGGGAGCATACAAAG-TA------GACA-G----GATTt
gi|2 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACactt
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTTT-CGAA-AGCGGGAGCATA-A----CA------AACA-G-A-T------------AGGATGATTT-------------------------------------------G------T----------TATA------T-----------------ATTCATGGATCACTTTACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAGC------TGC-AACATTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGC-ATAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TT-ATTT--ATTT-ATCTACA--ATCTATAT-TTGAT-TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTTTTCAAATGGAGGGAGTATA-AAAA-CA-------------A-TAATTT-AATCTCAGAATAGCTTCAACGTT-----------------AA------------A----G------CCATATATAGATATA------T-----------------AGTCAAGGGTCACTTTACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGTTCAAACGTT-----------------AG------------AACCAG------A----------TATA------T-----------------AG-----AATCACTTTACTTCCTGATCGGAACGT---AGATTTACTACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGACCTTCACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA---T-AGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TT-A-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : TAGAGCGATACTTTTATTCTTC-GACATTTGT-CTAATGGCGGGAACATA-AAAAACA------GACA-GTA-TCACTTAAAATTCAGACTAGTTTAAATGTA-----------------AG------------A----G------C-----------------------------------------CAATGATCATTTTATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTTCGAATGGCGGGAGCAAA-AAAA-CAACAACAGACA-GGA-TGATTTGAAACTAAGAATAGTTTAAACGTT-----------------AG------------A----GCAAGATC----------TATAGACATGT-----------------GGTCAAGGATCACGTTACTGCCTGATTAGAACGT---AGACT
gi|7 : AGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTA---ACCTTTACTAAAATCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|8 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A--TAATG-------------------TATC--TG--CTGGATTAA-CC--A--T-AACTACA--ATCTACATATTGATGCTT-TCGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTACTGAACTTGTATAATGAAATTGTGCAATAGCGAGATACGA
blockSeqs : C A C T C A ACAACAGACAGGA T T CGAGTCATATATATAGGTAATCTATAA AAA A ATGATAA A A . C G AGAA C A TATC T GCG C C G C C T A . AA GT A AA TCGACAAACAATT TTGATGAGCTT C A TGCATAATGATGTTATCGTCAAAGGATAAACGTCAATTAATGCTTAATC T TA ATT . A AT GAATT . A GC GATGTAACAT
blockSeqs : A T . T . . AACAGGG A G ATATTCAGATATAAAGATAAATTATAT . A T T T . C G AAAA C C . T ACA T T T A G T C . . . A . ACAAAT . T T TTACCGCGGATAAGCGTCATTTTATACCTATTA T . A . . AA ATTT . . T TCGTA
blockSeqs : C T . . . . GACAGGA G G TGAGCCAGATATATAGATATAT . G T G A . . . . . A . T . T G G T T A G . . . T . C TGCAATTTATACTAAATACGTAATAATG . . C . . A AT
blockSeqs : A . . . . GACAGTA G A AGAGCAAGATCTATAGACATGT . A T G A . . . . . C
blockSeqs : . . . . . AACAGA A G AAAGCCATATATAGATATAT . . T G
blockSeqs : . . . . GACAG C . AGAACCAGATATAT . .
blockSeqs : . . . . A G . GTTATAT .
blockSeqs : . A . AGAGC .
blockSeqCons : *** *******
originalCons : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
finalCons : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111 2222 111 2222222 11 11 11 4444444444444 66666666666 8888888888888888888888888888888888888888888888888888888888 11 111 11 1 111 2222222 11 11 4444444444
lowQualScore : 0 1 7 0 5 0 5 4 888888888888888 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 5 0 0 4444444 1 1 0 8 0 5 8 0 4444 2 1 1111 3 0 555 0 7 1 1 4 0 1 1 1 6666666 11 11 1 00 33 2222222222222 33333333333 1 1 0 8888888888888888888888888888888888888888888888888888888888 0 3 33 444 33 0 111 9999999 88 7 44 6666666666
lowQualScore : . . . . . . . . ............... . . .................................................................................. ... . . . . ....... . . . . . . . . .... . . .... . . ... . . . . . . . . . ....... .. .. . .. .. ............. ........... . . . .......................................................... . . .. ... .. . ... ....... .. . .. ..........
lowQualScore : 2 0 8 6 0 0 0 4 888888888888888 7 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 666 1 7 3 6 3333333 0 0 8 0 8 0 8 2 8888 5 0 2222 2 2 555 2 0 0 0 2 8 0 0 0 0000000 00 00 0 55 88 3333333333333 33333333333 0 2 2 8888888888888888888888888888888888888888888888888888888888 8 5 88 555 88 0 000 0000000 33 3 33 0000000000
consensus : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
Reference ( family-866 ) : TACAGGGATANTTTTTATCTTC-ATCATTTTT-CGAATGGCGGGAGCATA-AAAA-CA------GACA-G-A-TGATTTGAAACTCAGAATAGTTTAAACGTT-----------------NG------------A----G------N----------TATA------T-----------------AGTCAAGGATCACTTTACTTCCTGATCGGAACGT---AGATTTGCTACTGATGCAGGTTACTATATAGTGACCAGGAAATAGACAGCAAGGCTGTGATTTAATTCGTGAATCGGAAATTGTTATGAATGTTTGTACGCTGCT----T--CGATAAAACACGTTTATCTTATCCTT-CCCATGCAAACGTTTAAAATGGTAGAAAAAAGCCGANATA----TACACAGCTGCAGCGACCTTTACTAAAATCNTGTAATGAAATTNTGCAATAGCGAGAAGCGATATAGTATATATCGTGACCCCGATTTGCAACNTTNGGCACTACNATTAGT-------TAATGCTG--CTTAA--TAACACTGCAT--TGATATTC-ACAAA---TCGGTTATCTGTACGTCGTGTGTA-----------GGNACATTTGTATTACTGCGCGCTGCGC-AT-------T-------TATCGTCGAA--AT--ACGTC-A-TTAATGCCTAATACATTTTTAAT--TATA--TA--CTAG-TT-A-TC--A-TT-AACTACA--ATCTACATATTGAT-NTT-ATGT-ACA-TTAAAAGCCACGAAACTACGTTTTGT
gi|1 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGAC
gi|10 : caagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTACTTCCTTATCT-AATGT---AGATGTGTTACTGATGCAGGTTCTTATATAGTATCCAGGAAACAGACAGCAAGGCTTTAATTTAATTCGTGAATCGGAAATTATTATGAATGTTTGCACGCTGCT----T--CCACAAAAC--------CTTATCCTTCCCCATGCAAACGTTT
gi|11 : CTTT-ATCATTTTT-CGAATGGCGGAAGCATA-AAAT-C--------------A-TTATTGTAAACTCAGAATAGTTTAAACGTT-----------------CG------------A----G------T----------CATA------TATATAGGTAATCTATAAAGTCAAGCTTCCCTTTACTTCCTGGTCGGG-------------GCAACTGATTCAGGTTAATATAAAG
gi|12 : CACTTGTATTACTTTGCTCTACGC-AT-------TATGATGTTATCTTTGAA--GT-----------TGA-----AACACACTTTAAAT--TATG--TAAACTAA-TT-A-TCT-A-TTTAATTACAGTATTTACATAATGAT-GTT-AT----CA-TTAAAAGCCACAGAGCAACGTTTTGT
gi|15 : AAA-CA------AACA-G-GGCAATTTGAAACTCAGAATATTTTAGACGTTATATTCAGATATAAAGATA------------A----A------T----------TATA------T-----------------AGTTTATTATCACTTTACctga
gi|16 : TATCGTGACCCTGACTTGCAACGTTATGCACTACCATTAGTTACATTGTAATGCTG--CTTAA--TAATACTGAAT--TGA
gi|17 : TAATATACATTGTGACCACGATTTGTAACCTTTGACATTACAATTAGT-------TGATGCTG--CTTAGGTTAGCACT
gi|18 : gTACAGGGGTAATTTTACCCGTC-ATCATGTTT-TGAATAGTGGGAGCATACAAAG-TA------GACA-G----GATTt
gi|2 : TAACTTT-ATCATTTTT-CGAATGGCCGGAACATA-AAAA-CA------GACAGG-A-TGATTTGAAACTCAGAATAGTTTAAACATT-----------------TGAGCCAGATATATA----G------A----------TATA------T-----------------AGTCAAGGATCACTTTATTTCCTGATCAGAATGTAAAAAATTCGCTACTGATGCAGGTTACTGTATAGTGACactt
gi|3 : aagaggacaattaccagtttttgtaatacatagtacaaaatgacatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacacaaaacaacagaaaatgtgtctgtcattacgaatgcccctacgattgcccatgaaccaaaaattttaccaagattttatgtaaaaaaaggtcataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaTATAGGGATACTTTTTATCTTC-ATCATTTTT-CGAA-AGCGGGAGCATA-A----CA------AACA-G-A-T------------AGGATGATTT-------------------------------------------G------T----------TATA------T-----------------ATTCATGGATCACTTTACTTCCTGATCGGAGCGT---TGATTTGCTACTGACGCAGATTACTATATAATGACCAGGAAACAGACAGCAAGGCGGTGATTTAATTCGTGAATTGGAAAATGTT-------TTTTTATGCTGCT----T--CAACAAAAAACGTTTATCGTG-CCTT-CCCATGCAAA-GTTTAATATTGTAGATAATAGTCGACATA----TACACAGC-ACAGC------TGC-AACATTATGTTATCAAATTCTGCAATAGCGAGAAGAGATATAGTATATAACGCGACCCAGAGTTGCAACGTATGACACTACCATTAGT-------TAACGCTG--CTTAA--TAACACTTCAT--TGATATTT-AT------TCGGTTATCTGTATGTCTTGTGTA-----------GGAACATTTGTATAACTGCGCGCTGTGC-ATAATGATGT-------TATCGTCAAAGGATAAACGTCAA-TTAATGCTTAATCCATTTTTAATTATATA--TA--CTAA-TT-ATTT--ATTT-ATCTACA--ATCTATAT-TTGAT-TTTGATGTAACATTTCAAAGCCACGAAACTACGTTTTGT
gi|4 : TACATGAATAATTTT-ATCCTCCATCCTTTTTTCAAATGGAGGGAGTATA-AAAA-CA-------------A-TAATTT-AATCTCAGAATAGCTTCAACGTT-----------------AA------------A----G------CCATATATAGATATA------T-----------------AGTCAAGGGTCACTTTACTTCCTGATCGGAACGT---TGCTTTGCTACTGATGTAGGTTACT-TATAGAGGACAGGAAATAGA---CAAGACTGTGATTTAAATCATGAATTGGAAAATGTTATGAATGTGTGTACGCTGCT----T--CTATAAAATACGTt
gi|5 : caacacaaaagctagaaatatgtatgtcgatacgaatgcccacgcgatcggaaacaattttttatcgaggatttttggtccaaaatggctataactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGTTCAAACGTT-----------------AG------------AACCAG------A----------TATA------T-----------------AG-----AATCACTTTACTTCCTGATCGGAACGT---AGATTTACTACTGA--CA------------------AGGAAATAGACCGCAAAACTGTGATTTGATTCGTGAATCGGAAATTGTTATAAATGTTTGTACGCTGCTATGATAACGATAAAACACTTTTTTCTCATCCTT-CCGATGTAAACGTTTAAAATGGTAAAAGAAAAC-GAAATA----TACACAGCTGCAGCGACCTTCACCAGAATCCTGTAATGGAATTGTGGAAAAGCGAGAAGCGATATAGTTTATATCGTGACCCTTATTTGCAACTTTAGGCACTAAGCTTTGT-------TAATGCAG--CTTAA--TTACACTATAT--TGATAT---ACAAA---T-AGTTATGTGAACTTCGTGTGTA-----------CGCACATTTGTATTACTGCGCGCTG-------------T-------TACCGCGGAT--AA--GCGTC-ATTTTATACCTATTACATTTTTAAT--TATATTTA--TTAG-TT-A-TCGAA-TT-AACTACaagaccgatttcctaatccgtaataaatgttt
gi|6 : TAGAGCGATACTTTTATTCTTC-GACATTTGT-CTAATGGCGGGAACATA-AAAAACA------GACA-GTA-TCACTTAAAATTCAGACTAGTTTAAATGTA-----------------AG------------A----G------C-----------------------------------------CAATGATCATTTTATTTCCTGATCGAAACGT---AGATTTGCTACT
gi|7 : attataaaaagtaaaataccaaagtgctcttctgcctagaacattcaatttccagcttgtagaaaaaaaacaacacttgaaatgtgtcgaaacgaacgctcccgcgattgataggaaaccaatatttaccaacaatattaagtacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC-ATCGTTTTTTCGAATGGCGGGAGCAAA-AAAA-CAACAACAGACA-GGA-TGATTTGAAACTAAGAATAGTTTAAACGTT-----------------AG------------A----GCAAGATC----------TATAGACATGT-----------------GGTCAAGGATCACGTTACTGCCTGATTAGAACGT---AGACT
gi|7 : AGACTGTGATTTAATTCGTAAATCGGAAATTGTTATGAATTTTTGTACGCTGCT----T--CGATAGAACACGATTATCTTATCATT-CCCATGCAAACGCTTAAAATGGTAGAAAAAAGTCGACATATATCTACACAGCTGTA---ACCTTTACTAAAATCTTGTAATGAAATTTTGCGATAGCGAGAAGCTTTAGAGTAAATAgtgatttaattcgtaaatcggaaattgttatgaatttttgtacgctgcttcgatagaacacgattatcttatcattcccatgcaaacgcttaaaatggtagaaaaaagtcgacatatatctacacagctgtaacctttactaaaatcttgtaatgaaattttgcgatagcgagaagctttagagtaaata
gi|8 : attttcatcgttttttcgaatggcgggagcaaaaaaacaacaacagacaggatgatttgaaactaagaatagtttaaacgttagagcaagatctatagacatgtggtcaaggatcacgttactgcctgattagaacgtATCAGA-------TAATGCTGAATTCAA--TCACAATGCACAATAATATTCGACAAACAATTGACTATCTGTACGTCGTGTGTATTGATGAGCTTGGTACATTTGTATCACTATGCGCTATGCAAT-------T-------TATA--CTAA--AT--ACGTA-A--TAATG-------------------TATC--TG--CTGGATTAA-CC--A--T-AACTACA--ATCTACATATTGATGCTT-TCGT-A-----AGAAGCCACGAAAATACATTTT
gi|9 : TACAGTGACCAGGAAATAGACAGCAAGGCTGTAATTTAATTCACGAATAGGAAATTGTTATGAATGTGTGTAGGCTGAT----T--CGATAAAACACGTTTATCTTATCCTT-CCCGTGC--------AAAAT----------AGCCGAAATA----TACACAGCTGGAACAATCTTTACTGAACTTGTATAATGAAATTGTGCAATAGCGAGATACGA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTATAAAATGTAAAATACCAAAGTGCTCTTCTGCCTAGCACATTTAATTTCCAGCTTGTAGAAAAAAAACACAAACACGTGAAATGTGCCGAATCGAATGCTGTCGCGATTGATAGGAAACCAATATTT
Unaligned ( gi|14 ): ACATTCACTTTCCATCTTGTTGAAAAAAACACAAAAACTGGAAATGCGTCTGTCGATATAAACGCGATTATTCGGAAACCAACTTTTTATTAAA
Unaligned ( gi|19 ): ATTGAACTAGAAATGTGTATGTAGACACGAATGGCCCACAACTGATTGGAAAACA
Unaligned ( gi|20 ): GACTAGAAATGTGTTTGTCGACACGAATGTCTCAACTATTAATCAGAAACCAATT
Unaligned ( gi|21 ): AAACTGGAAATGTGTCTGTCGATAAGAATGCCCCCGC