lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1 66666666666666666 1 1 1 1111 11111 111111 22222222 1 4444444444444444444444444 222 77777777 4444444444444444444444444444444444444444444444444444444 111111 1
lowQualScore : 0 3 3 22222222222222222 1 5 5 1 1 0 5 3 6 3 2 4444 9 66666 7 999999 0 0 99999999 0 0 4 0 2 5 0 5 66 5 4444444444444444444444444 111 0 55 5 00000000 0 77 0 2 3 0 2 4444444444444444444444444444444444444444444444444444444 0 33 2 444444 3 11 8888 8 1 7
lowQualScore : . . . ................. . . . . . . . . . . . .... . ..... . ...... . . ........ . . . . . . . . .. . ......................... ... . .. . ........ . .. . . . . . ....................................................... . .. . ...... . .. .... . . .
lowQualScore : 0 0 3 00000000000000000 4 4 0 4 0 6 0 5 7 3 5 2222 3 77777 3 222222 8 8 00000000 8 8 0 8 7 0 9 0 99 0 4444444444444444444444444 000 8 55 7 00000000 7 99 3 5 2 2 5 7777777777777777777777777777777777777777777777777777777 7 55 0 444444 6 99 8888 0 0 0
consensus : TTAAATTTTTATGCACTNATGCAAAGTC-AAAACG---A---AACTAT-AGATGTCTTNGTGTTTTCGTTTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACNCAA----CTTACAATGC-----TATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACGTTTTTGAATACAANTGCATCTAAATTCAAATATTGTATTAACAGTTTANATGTTTGG-AATATTTTCA--TCAGC-AA----------T-----------A--CTAAATTATGATTGCGAAATAT--GTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-T-ATTATATGACACTGAAATGAAG--AAAACAAGAACATAATAANTGTGTTTATGTGCGTGCCTGTTCATGTGCAAATGTGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Reference ( gi|1 ) : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAACGAAAA---AACTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACACTGC-----TATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTGTCA--TCAGC-AA----------T-----------A--CTAAATTATGATT--AAAATAT--GTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-T--------TATGACACTGAAATGAAG--AAAACAAGAACATAATAAGTGTGTTTATGTGCGTGCCTGTTCATGTGCAAATATGTGCGCGCGCGCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACAATTTAT
gi|2 : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAACG-------------------------TGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGC-----TATGTAACAAGTTTACATAATTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTTAATACAAATGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCA--TCAGC-AA----------T-----------A--CTAAATTATGATT--GAAATAT--GTCACCTTCTCCCCACAAATAAGACGAAAATTACGAAACAGTG-TTATGATTATATGACACTGAAATGAAG--AAAACAAGAACATGAT
gi|13 : TTATGCATTGATGCAAATTCGAAAAC----A---AACTATAAAATGTCTTAGTGATTTCGTTTTTAAAGCTTTTGAGAAAAGGAAAAATTAAATATTCAG-TTAAATACAA----CTTACACTTA-----TATGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatttagttgtacacacttcacatgtaattactgcaccatttgttgtatcaattgtaaatatgcatagtatgttgtatcctcatgggtcttatggcctattggaatttctgaataaacgata
gi|5 : aaaggcaacgtatttctaaacgtttagcTGCAAAGTA-AAAAAGAAAACAAAACTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGC-----TATGTTACAAGTTTACATAACTTATA------TGAAATATAAAAAGTTAAAAACAATAACAAAGAAAACTTTTTTGAATACAAATGCATCTTAATTCAATTATTGTATTAACAGTTTACATGTTTGG-AATATTTTCA--TCAGT-AA----------T-----------A--CTAAACTGTGATT--GAAATAT--GTCATCTTTTCCGAACAAATAAGACGAAAATTACGAAACAATG-TTTTGATTATATAACACTGAAATGAAG--AAAACAAGAACATTATAATTGTGTTTATGTGAGTGCCTGTTCATGTGCAAATGTGTGCGTGCGttc
gi|9 : GTTTTCGTGTTTTCGTTTTTTAACCTTATGAGAT-AAGGAAAAT--AATTTTCAGTTT-AACACAACTTGCTTGCAATGA-----TATGTTTCTAGTTTATAT-ACGTATATCACTTTGAAA-A-AAA--------AGCAACAGTTT---AAATG-TTTGGAATAC
gi|10 : GTTTTCGTGTTTTCGTTTATTAACCTTGTGAGAC-AAGGAAGAT-AAAT-TTCAG-TTCAACACAA----CTTGC-TTGCAATAATATGTTTCTAG-TTATAT-ACGTATA------Ttttcagcagcaaatggataaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|3 : ATATTCAG-TT-AACCCAA----CTTACAATGC-----TATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCA--TCAGC-TA----------T--------------CTAAATTATGATT--GAAATAT--GTCACCTTCTCCGCATAAATAAGACGAAAATTACGAAACAGTGATTA------TATGAAACTGAAATGAAG--AAAACAAGAACATAATAAcactttgaaaaaaaggcaaccgtttaaatgtttggaatactttcagcagcaaatggctaaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|4 : TATAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTACATGTTTGG-AATATTGTAA--TCAGC-AA----------T-----------A--CTAAAATATGATT--GAAATAT--GTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-T--------TATGACACTGAAATGAAG--AAAACAAGAACATAATAAGTGTGTTTATGTGCGTGCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcatgggtcttatggcctattagaatttctgaataaacgatatatgtatgtgatat
gi|8 : AAAAATTGCA---ACAGTTTATATATTTGA-AAAA-----AATTCAGA-AA----------C-----------A--CTAAATTATGATTGCAATATAT--GTCACCTTCTCCGCATAATTAa
gi|9 : caagAACAGTTTAAATGTTTGG-AATACTTTCA--GCAGCAAA----------TGGATAAAATAAA--CTAAATTATAATTGCAATATAT--ATCACCCTCTCCGTAAAAATtgttttgcgtgggtgtacatgtatgtgtgtgggtttgcatgcatgtgtgttagcgcgtatgtgtgttttatttatttgtacacattttcatataattattgcatcatttgttatataaattgtatcatgttgtatcctcaagggtcttatggcctatt
gi|10 : gttttcgtgttttcgttttttaaccttatgagataaggaaaataattttcagtttaacacaacttgcttgcaatgatatgtttctagtttatatacgtatatcactttgaaaaaaaagcAACCGTTTAAATGTTTGG-AATACTTTCA--GCAGC-AAATGGCTAAAAT-----------AAACTAAATTATAATTGCAATATAT--ATCACCCTCTCCGTAAAAATtaaa
gi|7 : gttttcgtgttttcgtttattaaccttgtgagacaaggaagataaatttcagttcaacacaacttgcttgcaataatatgtttctagttatatacgtatatcactttgaaaaaaaggcATATTTGGTAATATT-TCA--T-A---AA----------C-----------A--CTAAATTATGATT--GAAATATATGTCACCTTCTCTGCACAAAAAACAC-AAAATCATGAAATATTG-T--------TCTGA---TTATATGACATTGAAACAATGATATGATAATTGTGTT--TGTGTATGCGTGTACATGT----ATGTGTGTGtaaa
gi|15 : ATAT--GTCACCGCCTCCGCACAAATAATACGATAACTATAAAACATTG-TTGTAATTATATGACACTGAAAAGACG--AAAggtttgtatacatatatgttagcgcgtatgtgcgttttatttatttgtacacattttcatgtaattattggatcatttgttatataaactgtatcatcttgtatcctcaagggtcttatggcctattggaattttctgaataaacaaac
gi|6 : agttcatatgtatgtgtttatccatggtgcagtccttgatatTAT--GTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-T--------TATGACACTGAAATGAAG--AAAACAAGAACATAATAAGTGTGTTTATGTGCGTGCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATAACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAAC
gi|14 : --AGTACGTCTGTGCGTTGTATTTAGTTGTACGCATTTCATATATAATTACTGTGCCATTT------GTTGTATCAATTGTAAATATGTA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTTTGAATAAAg
gi|12 : --AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTAACCTGTAATTACTGCATCATTT------GTTGTATCAACTGTAAATATGGA-TACTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGTA-TTTCGGAATAA
gi|7 : aatgtgtgtgagtgtatt--AGCGCGTATGTGCGTTTTATTTATTTGTACACATTTT-CATGTAATTATTGGATCATTT------GTTATATAAACTGTA----T-CA-TC-----TTGTATCCTCAAGGGTCTTATGGCCTATTGGAATTTTCTGAATAAACAA
gi|8 : atatttggtaatatttcataaacactaaattatgattgaaatatatgtcaccttctctgcacaaaaaacacaaaatcatgaaatattgttctgattatatgacattgaaacaatgatatgataattgtgtttgtgtatgcgtgtacatgtatgtgtgtgggtttgtatacatatatgtt--AGCGCGTATGTGTGTTTTATTTATTTGTACACATTTT-CATATAATTATTGCATCATTT------GTTATATAAATTGTA----------T-CATGTTGTATCCTCAAGGGTCTTATGGCCTATTac
gi|11 : caagaaaaattgcaacagtttatatatttgaaaaaaattcagaaacactaaattatgattgcaatatatgtcaccttctccgcataattatgttttgcgtgggtgtacatgtatgtgtgtgggtttgcatgcatgtgtgttGCGTATGTGCATTGCACTCATTTGTACCTCTTTAACATATTATTACTGCACCATATGTAACAGTTGTATTAATTGTAATTA--CA--TGTATG-TATATCATATTGGTTCTGATGGCGTATTGGAA-GTTCTGAATAAACGAT
gi|2 : gtgtgtgttgtgtgtgttttatcTTGTATTTAGTTGTACACACTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGAT
gi|16 : ttaaatttttagcacttatgcaaagtcaaaacgtgttttcgtgtttaaagcttttgaaataaagaaaaatgaaatattcagttaacccaacttacaatgctatgtaacaagtttacataatttatatgaaatataaaaacaataacatagaaaacattttttaatacaaatgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagcaatactaaattatgattgaaatatgtcaccttctccccacaaataagacgaaaattacgaaacagtgttatgattatatgacactgaaatgaagaaaacaagaacatgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATTGTGGATCCGCCCTTGTAT-TTGTATCCTTACGGGGTATATAGCTCATTGGAA-TTT-TGAAGAAAAAATa
gi|17 : ATGTTGTATCCTCATGGGTCTTATGGCCTA-TGGAATTTTCCGAATAAAatgcataatataga
gi|3 : cCCTCATGGGTCTTATGGCCTATTAGAA-TTTCTGAATAAACGATATATact
Alignments
lowQualScore : 2 1 55555555555555555555555 1 1 2222 111111 22222222 4444444444444444444444444 222 44444 111 9999999999999999999999999999999999999999999999999999999 111111
lowQualScore : 3 1 0 77777777777777777777777 3 3 7 0 1 5 1 1 4444 0 5 666666 44444444 4 1 1 5 5 2222222222222222222222222 888 0 66666 66 5 1 111 6 1 0 7777777777777777777777777777777777777777777777777777777 1 222222 2 5555 7
lowQualScore : . . . ....................... . . . . . . . . .... . . ...... ........ . . . . . ......................... ... . ..... .. . . ... . . . ....................................................... . ...... . .... .
lowQualScore : 7 0 0 88888888888888888888888 3 0 3 8 7 7 4 0 3333 7 0 444444 22222222 8 0 0 0 0 5555555555555555555555555 000 8 00000 99 0 0 777 7 0 7 3333333333333333333333333333333333333333333333333333333 9 888888 3 1111 3
consensus : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGA-TGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTANATGTTTGG-AATATTTTCATCAGC-AA----------T-----------A--CTAAATTATGATTG-GAAATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT----ATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGNGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Reference ( family-857 ) : TTAAATTTTTATGCACTNATGCAAAGTC-AAAA------CGAAA---CTAT-AGA-TGTCTTNGTGTTTTCGTTTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACNCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACGTTTTTGAATACAANTGCATCTAAATTCAAATATTGTATTAACAGTTTANATGTTTGG-AATATTTTCATCAGC-AA----------T-----------A--CTAAATTATGATTGCGAAATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT-T--ATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATGTGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
gi|1 : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAAAAACTATTAGA-TGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACACTGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTGTCATCAGC-AA----------T-----------A--CTAAATTATGATTA--AAATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACAATTTAT
gi|10 : GTTTTCGTGTTTTCGTTTATTAACCTTGTGAGAC-AAGGAAGAT-AAAT-TTCAG-TTCAACACAACTTGCTTGCAATAATATGTTTCTAG-TTATAT-ACGTATA------T
gi|10 : AACCGTTTAAATGTTTGG-AATACTTTCAGCAGC-AAATGGCTAAAAT-----------AAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATcactttgaaaaaaaggcaaccgtttaaatgtttggaatactttcagcagcaaatggctaaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|11 : gttttcgtgttttcgtttattaaccttgtgagacaaggaagataaatttcagttcaacacaacttgcttgcaataatatgtttctagttatatacgtatatcactttgaaaaaaaggcGCGTATGTGCATTGCACTCATTTGTACCTCTTTAACATATTATTACTGCACCATATGTAACAGTTGTATTAATTGTAATTA--CA--TGTATG-TATATCATATTGGTTCTGATGGCGTATTGGAA-GTTCTGAATAAACGATtaaa
gi|12 : gtgtgtgttgtgtgtgttttatc------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTAACCTGTAATTACTGCATCATTT------GTTGTATCAACTGTAAATATGGA-TACTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGTA-TTTCGGAATAA
gi|13 : aatgtgtgtgagtgtattTTATGCATTGATGCAAATTCGAAAA------C-AAA---CTAT-AAAATGTCTTAGTGATTTCGTTTTTAAAGCTTTTGAGAAAAGGAAAAATTAAATATTCAG-TTAAATACAA----CTTACACTTATATGCT
gi|14 : aaaggcaacgtatttctaaacgtttagc------------AGTACGTCTGTGCGTTGTATTTAGTTGTACGCATTTCATATATAATTACTGTGCCATTT------GTTGTATCAATTGTAAATATGTA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTTTGAATAAAttc
gi|15 : ATATGTCACCGCCTCCGCACAAATAATACGATAACTATAAAACATTGTTGTA-ATTATATGACACTGAAAAGACGAAA
gi|16 : agttcatatgtatgtgtttatccatggtgcagtccttgatatATTGTGGATCCGCCCTTGTAT-TTGTATCCTTACGGGGTATATAGCTCATTGGAA-TTT-TGAAGAAAAAATAT
gi|17 : ATGTTGTATCCTCATGGGTCTTATGGCCTA-TGGAATTTTCCGAATAAAgcataatataga
gi|2 : cTTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------C-----------------------GTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTAACAAGTTTACATAATTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTTAATACAAATGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATCAGC-AA----------T-----------A--CTAAATTATGATT--GAAATATGTCACCTTCTCCCCACAAATAAGACGAAAATTACGAAACAGTGTTATG-ATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TGATact
gi|2 : TTGTATTTAGTTGTACACACTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatttagttgtacacacttcacatgtaattactgcaccatttgttgtatcaattgtaaatatgcatagtatgttgtatcctcatgggtcttatggcctattggaatttctgaataaacgata
gi|3 : ttaaatttttagcacttatgcaaagtcaaaacgtgttttcgtgtttaaagcttttgaaataaagaaaaatgaaatattcagttaacccaacttacaatgctatgtaacaagtttacataatttatatgaaatataaaaacaataacatagaaaacattttttaatacaaatgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagcaatactaaattatgattgaaatatgtcaccttctccccacaaataagacgaaaattacgaaacagtgttatgattatatgacactgaaatgaagaaaacaagaacatgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATCAGC-TA----------T--------------CTAAATTATGATT--GAAATATGTCACCTTCTCCGCATAAATAAGACGAAAATTACGAAACAGTG------ATTATATGAAACTGAAATGAAGAAAA--CAAGAACA-TAATAA
gi|3 : CCTCATGGGTCTTATGGCCTATTAGAA-TTTCTGAATAAACGATATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcatgggtcttatggcctattagaatttctgaataaacgatatatgtatgtgatat
gi|4 : atattcagttaacccaacttacaatgctatgttacaagtttacataacttatatgaaatataaaaacaataacatagaaaacatttttgaatacaattgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagctatctaaattatgattgaaatatgtcaccttctccgcataaataagacgaaaattacgaaacagtgattatatgaaactgaaatgaagaaaacaagaacataataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGTTTACATAACTTATA------TGAAATATAAA--------AACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTACATGTTTGG-AATATTGTAATCAGC-AA----------T-----------A--CTAAAATATGATTG--AAATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATATgtatgtgatat
gi|5 : TGCAAAGTA-AAAAAGAAAACAAAA---CTATTAGA-TGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAAAAGTTAAAAACAATAACAAAGAAAACTTTTTTGAATACAAATGCATCTTAATTCAATTATTGTATTAACAGTTTACATGTTTGG-AATATTTTCATCAGT-AA----------T-----------A--CTAAACTGTGATT--GAAATATGTCATCTTTTCCGAACAAATAAGACGAAAATTACGAAACAATGTT-TTGATTATATAACACTGAAATGAAGAAAA--CAAGAACA-TTATAATTGTGTTT---ATGTGAGT-GCCTGTTCATGTGCAAATGTGTGCGTGCGa
gi|6 : TATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATAACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACG
gi|7 : ATATTTGGTAATATTT-CAT-A---AA----------C-----------A--CTAAATTATGATTGAAATATATGTCACCTTCTCTGCACAAAAAACAC-AAAATCATGAAATATTGTT-CTGATTATATGACATTG---------AAA--CAATGATA-TGATAATTGTGTT-----TGTGTAT-GCGTGTACATGT----ATGTGTGTG
gi|7 : ------------AGCGCGTATGTGCGTTTTATTTATTTGTACACATTTT-CATGTAATTATTGGATCATTT------GTTATATAAACTGTA----T-CA-TC-----TTGTATCCTCAAGGGTCTTATGGCCTATTGGAATTTTCTGAATAAACAAggtttgtatacatatatgttagcgcgtatgtgcgttttatttatttgtacacattttcatgtaattattggatcatttgttatataaactgtatcatcttgtatcctcaagggtcttatggcctattggaattttctgaataaacaaac
gi|8 : atatttggtaatatttcataaacactaaattatgattgaaatatatgtcaccttctctgcacaaaaaacacaaaatcatgaaatattgttctgattatatgacattgaaacaatgatatgataattgtgtttgtgtatgcgtgtacatgtatgtgtgtgggtttgtatacatatatgttAAGA--AAAATTGC--AACAGT--------TTATAT---ATT----TGAAAAAAATTCAGAAACACTAA--ATTATGATTGCAATATATGTCACCTTCTC-CGCATAATTATGTTT---TGCGTGGGTGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTATGTGTGTTTTATTTATTTGTACACATTTT-CATATAATTATTGCATCATTT------GTTATATAAATTGTA----------T-CATGTTGTATCCTCAAGGGTCTTATGGCCTATTac
gi|9 : cGTTTTCGTGTTTTCGTTTTTTAACCTTATGAGAT-AAGGAAAAT--AATTTTCAGTTT-AACACAACTTGCTTGCAATGATATGTTTCTAGTTTATAT-ACGTATATCACTTTGAAA-A-AAA--------AGCAACAGTTT---AAATG-TTTGGAATAC
gi|9 : AACAGTTTAAATGTTTGG-AATACTTTCAGCAGCAAA----------TGGATAAAATAAA--CTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATtttcagcagcaaatggataaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
Alignments
lowQualScore : 1 1 44444444444444 1 1 2222 111111 22222222 44444444444 22 1 333 111 444444444444 111111
lowQualScore : 3 0 66666666666666 3 0 3 1 7 0 1 5 1 0 4444 0 5 666666 44444444 1 1 4 4 9999 8 22222222222 22 3 111 7 66 5 1 111 1 6 3 1 33 333 0 3 6 3 0 777777777777 1 222222 2 55 555 7
lowQualScore : . . .............. . . . . . . . . . . .... . . ...... ........ . . . . .... . ........... .. . ... . .. . . ... . . . . .. ... . . . . . ............ . ...... . .. ... .
lowQualScore : 3 0 22222222222222 5 2 0 0 3 8 7 7 4 7 3333 7 0 444444 22222222 4 0 4 4 4444 9 22222222222 44 3 111 3 99 0 0 777 0 7 2 0 55 000 8 8 5 8 6 555555555555 9 888888 3 44 000 3
consensus : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Reference ( family-857 ) : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTANATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---ATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGNGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
gi|1 : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAAAAACTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACACTGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTGTCATC-A----GC-AAT-----------ACTAAATTATGATTA-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---AT-----GACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACAATTTAT
gi|10 : GTTTTCGTGTTTTCGTTTATTAACCTTGTGAGAC-AAGGAAGAT-AAAT-TTCAG-TTCAACACAACTTGCTTGCAATAATATGTTTCTAG-TTATAT-ACGTATA------T
gi|10 : AACCGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGCTAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATcactttgaaaaaaaggcaaccgtttaaatgtttggaatactttcagcagcaaatggctaaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|11 : gttttcgtgttttcgtttattaaccttgtgagacaaggaagataaatttcagttcaacacaacttgcttgcaataatatgtttctagttatatacgtatatcactttgaaaaaaaggcGTGTGTG---TTG--TG--TGTGTTTT------------ATCGCGTATGTGCATTGCACTCATTTGTACCTCTTTAACATATTATTACTGCACCATATGTAACAGTTGTATTAATTGTAATTA--CA--TGTATG-TATATCATATTGGTTCTGATGGCGTATTGGAA-GTTCTGAATAAACGATtaaa
gi|12 : GTGTATT------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTAACCTGTAATTACTGCATCATTT------GTTGTATCAACTGTAAATATGGA-TACTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGTA-TTTCGGAATAA
gi|13 : aatgtgtgtgaTTATGCATTGATGCAAATTCGAAAA------C-AAA---CTATAAAATGTCTTAGTGATTTCGTTTTTAAAGCTTTTGAGAAAAGGAAAAATTAAATATTCAG-TTAAATACAA----CTTACACTTATATGCT
gi|14 : aaaggcaacgtatttctaaacgtttagc------------AGTACGTCTGTGCGTTGTATTTAGTTGTACGCATTTCATATATAATTACTGTGCCATTT------GTTGTATCAATTGTAAATATGTA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTTTGAATAAAttc
gi|15 : AGTTCATATGT------ATGTGTTTATCCATGGTGC-AGT-----------CCT------TGAT---AT-ATATGTCACCGCCTCCGCACAAATAATACGATAACTATAAAACATTGTTGTAATTATATGACACTGAAAAGACGAAA
gi|16 : ATTGTGGATCCGCCCTTGTAT-TTGTATCCTTACGGGGTATATAGCTCATTGGAA-TTT-TGAAGAAAAAATAT
gi|17 : ATGTTGTATCCTCATGGGTCTTATGGCCTA-TGGAATTTTCCGAATAAAgcataatataga
gi|2 : cTTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------C----------------------GTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTAACAAGTTTACATAATTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTTAATACAAATGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATT-GAA-ATATGTCACCTTCTCCCCACAAATAAGACGAAAATTACGAAACAGTGTTATGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TGATact
gi|2 : TTGTATTTAGTTGTACACACTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatttagttgtacacacttcacatgtaattactgcaccatttgttgtatcaattgtaaatatgcatagtatgttgtatcctcatgggtcttatggcctattggaatttctgaataaacgata
gi|3 : ttaaatttttagcacttatgcaaagtcaaaacgtgttttcgtgtttaaagcttttgaaataaagaaaaatgaaatattcagttaacccaacttacaatgctatgtaacaagtttacataatttatatgaaatataaaaacaataacatagaaaacattttttaatacaaatgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagcaatactaaattatgattgaaatatgtcaccttctccccacaaataagacgaaaattacgaaacagtgttatgattatatgacactgaaatgaagaaaacaagaacatgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-TAT------------CTAAATTATGATT-GAA-ATATGTCACCTTCTCCGCATAAATAAGACGAAAATTACGAAACAGTG-----ATTATATGAAACTGAAATGAAGAAAA--CAAGAACA-TAATAA
gi|3 : CCTCATGGGTCTTATGGCCTATTAGAA-TTTCTGAATAAACGATATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcatgggtcttatggcctattagaatttctgaataaacgatatatgtatgtgatat
gi|4 : atattcagttaacccaacttacaatgctatgttacaagtttacataacttatatgaaatataaaaacaataacatagaaaacatttttgaatacaattgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagctatctaaattatgattgaaatatgtcaccttctccgcataaataagacgaaaattacgaaacagtgattatatgaaactgaaatgaagaaaacaagaacataataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTACATGTTTGG-AATATTGTAATC-A----GC-AAT-----------ACTAAAATATGATTG-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---AT-----GACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATATgtatgtgatat
gi|5 : TGCAAAGTA-AAAAAGAAAACAAAA---CTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAAAAGTTAAAAACAATAACAAAGAAAACTTTTTTGAATACAAATGCATCTTAATTCAATTATTGTATTAACAGTTTACATGTTTGG-AATATTTTCATC-A----GT-AAT-----------ACTAAACTGTGATT-GAA-ATATGTCATCTTTTCCGAACAAATAAGACGAAAATTACGAAACAATGTTTTGATTATATAACACTGAAATGAAGAAAA--CAAGAACA-TTATAATTGTGTTT---ATGTGAGT-GCCTGTTCATGTGCAAATGTGTGCGTGCGa
gi|6 : TATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTGTT---AT-----GACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATAACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACG
gi|7 : ATATTTGGTAATATTT-CAT--A-------AAC-----------ACTAAATTATGATTGAAATATATGTCACCTTCTCTGCACAAAAAACAC-AAAATCATGAAATATTGTTCTGATTATATGACATTGAAA-----------CAATGATA-TGATAATTG--------------------TGTT--TGTG----TATG------------CGTGTACATGTATGTGTGTGGGTTTGTATACATATATGTT------------AGCGCGTATGTGCGTTTTATTTATTTGTACACATTTT-CATGTAATTATTGGATCATTT------GTTATATAAACTGT--AT---CA-TC-----TTGTATCCTCAAGGGTCTTATGGCCTATTGGAATTTTCTGAATAAACAA
gi|8 : AAGA--AAAATTGC--AACAGT-------TTATAT---ATT----TGAAAAAAATTCAGAAACACTAA--ATTATGATTGCAATATATGTCACCTTCTC-CGCATAATTATGTTT---TGCGTGGGTGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTATGTGTGTTTTATTTATTTGTACACATTTT-CATATAATTATTGCATCATTT------GTTATATAAATTGT--AT---------CATGTTGTATCCTCAAGGGTCTTATGGCCTATTac
gi|9 : cGTTTTCGTGTTTTCGTTTTTTAACCTTATGAGAT-AAGGAAAAT--AATTTTCAGTTT-AACACAACTTGCTTGCAATGATATGTTTCTAGTTTATAT-ACGTATATCACTTTGAAA-A---------AAAAGCAACAGTTT---AAATG-TTTGGAATAC
gi|9 : AACAGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGATAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATtttcagcagcaaatggataaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
Alignments
lowQualScore : 1 1 44444444444444 1 1 2222 111111 22222222 44444444444 22 1 2222 111 444444444444 111111
lowQualScore : 3 0 66666666666666 3 0 3 1 7 0 1 5 1 0 4444 0 5 666666 44444444 1 1 4 4 9999 8 22222222222 22 3 4 7777 66 5 1 111 1 6 3 1 33 444 0 3 6 3 0 777777777777 1 222222 2 55 555 7
lowQualScore : . . .............. . . . . . . . . . . .... . . ...... ........ . . . . .... . ........... .. . . .... .. . . ... . . . . .. ... . . . . . ............ . ...... . .. ... .
lowQualScore : 3 0 22222222222222 5 2 0 0 3 8 7 7 4 7 3333 7 0 444444 22222222 4 2 4 4 4444 9 22222222222 44 3 4 9999 99 0 0 777 0 7 2 0 55 666 8 8 5 8 6 555555555555 9 888888 3 44 000 3
consensus : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Reference ( family-857 ) : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
gi|1 : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAAAAACTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACACTGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTGTCATC-A----GC-AAT-----------ACTAAATTATGATTA-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACAATTTAT
gi|10 : GTTTTCGTGTTTTCGTTTATTAACCTTGTGAGAC-AAGGAAGAT-AAAT-TTCAG-TTCAACACAACTTGCTTGCAATAATATGTTTCTAG-TTATAT-ACGTATA------T
gi|10 : AACCGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGCTAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATcactttgaaaaaaaggcaaccgtttaaatgtttggaatactttcagcagcaaatggctaaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|11 : gttttcgtgttttcgtttattaaccttgtgagacaaggaagataaatttcagttcaacacaacttgcttgcaataatatgtttctagttatatacgtatatcactttgaaaaaaaggcGTGTGTG---TTG--TG--TGTGTTTT------------ATCGCGTATGTGCATTGCACTCATTTGTACCTCTTTAACATATTATTACTGCACCATATGTAACAGTTGTATTAATTGTAATTA--CA--TGTATG-TATATCATATTGGTTCTGATGGCGTATTGGAA-GTTCTGAATAAACGATtaaa
gi|12 : GTGTATT------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTAACCTGTAATTACTGCATCATTT------GTTGTATCAACTGTAAATATGGA-TACTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGTA-TTTCGGAATAA
gi|13 : aatgtgtgtgaTTATGCATTGATGCAAATTCGAAAA------C-AAA---CTATAAAATGTCTTAGTGATTTCGTTTTTAAAGCTTTTGAGAAAAGGAAAAATTAAATATTCAG-TTAAATACAA----CTTACACTTATATGCT
gi|14 : aaaggcaacgtatttctaaacgtttagc------------AGTACGTCTGTGCGTTGTATTTAGTTGTACGCATTTCATATATAATTACTGTGCCATTT------GTTGTATCAATTGTAAATATGTA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTTTGAATAAAttc
gi|15 : AGTTCATATGT------ATGTGTTTATCCATGGTGC-AGT-----------CCT------TGAT---AT-ATATGTCACCGCCTCCGCACAAATAATACGATAACTATAAAACATTG-TTGTAATTATATGACACTGAAAAGACGAAA
gi|16 : ATTGTGGATCCGCCCTTGTAT-TTGTATCCTTACGGGGTATATAGCTCATTGGAA-TTT-TGAAGAAAAAATAT
gi|17 : ATGTTGTATCCTCATGGGTCTTATGGCCTA-TGGAATTTTCCGAATAAAgcataatataga
gi|2 : cTTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------C----------------------GTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTAACAAGTTTACATAATTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTTAATACAAATGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATT-GAA-ATATGTCACCTTCTCCCCACAAATAAGACGAAAATTACGAAACAGTG-TTATGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TGATact
gi|2 : TTGTATTTAGTTGTACACACTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatttagttgtacacacttcacatgtaattactgcaccatttgttgtatcaattgtaaatatgcatagtatgttgtatcctcatgggtcttatggcctattggaatttctgaataaacgata
gi|3 : ttaaatttttagcacttatgcaaagtcaaaacgtgttttcgtgtttaaagcttttgaaataaagaaaaatgaaatattcagttaacccaacttacaatgctatgtaacaagtttacataatttatatgaaatataaaaacaataacatagaaaacattttttaatacaaatgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagcaatactaaattatgattgaaatatgtcaccttctccccacaaataagacgaaaattacgaaacagtgttatgattatatgacactgaaatgaagaaaacaagaacatgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-TAT------------CTAAATTATGATT-GAA-ATATGTCACCTTCTCCGCATAAATAAGACGAAAATTACGAAACAG------TGATTATATGAAACTGAAATGAAGAAAA--CAAGAACA-TAATAA
gi|3 : CCTCATGGGTCTTATGGCCTATTAGAA-TTTCTGAATAAACGATATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcatgggtcttatggcctattagaatttctgaataaacgatatatgtatgtgatat
gi|4 : atattcagttaacccaacttacaatgctatgttacaagtttacataacttatatgaaatataaaaacaataacatagaaaacatttttgaatacaattgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagctatctaaattatgattgaaatatgtcaccttctccgcataaataagacgaaaattacgaaacagtgattatatgaaactgaaatgaagaaaacaagaacataataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTACATGTTTGG-AATATTGTAATC-A----GC-AAT-----------ACTAAAATATGATTG-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATATgtatgtgatat
gi|5 : TGCAAAGTA-AAAAAGAAAACAAAA---CTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAAAAGTTAAAAACAATAACAAAGAAAACTTTTTTGAATACAAATGCATCTTAATTCAATTATTGTATTAACAGTTTACATGTTTGG-AATATTTTCATC-A----GT-AAT-----------ACTAAACTGTGATT-GAA-ATATGTCATCTTTTCCGAACAAATAAGACGAAAATTACGAAACAATGTTT-TGATTATATAACACTGAAATGAAGAAAA--CAAGAACA-TTATAATTGTGTTT---ATGTGAGT-GCCTGTTCATGTGCAAATGTGTGCGTGCGa
gi|6 : TATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATAACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACG
gi|7 : ATATTTGGTAATATTT-CAT--A-------AAC-----------ACTAAATTATGATTGAAATATATGTCACCTTCTCTGCACAAAAAACAC-AAAATCATGAAATATTG-TTCTGATTATATGACATTGAAA-----------CAATGATA-TGATAATTG--------------------TGTT--TGTG----TATG------------CGTGTACATGTATGTGTGTGGGTTTGTATACATATATGTT------------AGCGCGTATGTGCGTTTTATTTATTTGTACACATTTT-CATGTAATTATTGGATCATTT------GTTATATAAACTGT--AT---CA-TC-----TTGTATCCTCAAGGGTCTTATGGCCTATTGGAATTTTCTGAATAAACAA
gi|8 : AAGA--AAAATTGC--AACAGT--------TTATAT---ATT----TGAAAAAAATTCAGAAACACTAA--ATTATGATTGCAATATATGTCACCTTCTC-CGCATAATTATGTTT---TGCGTGGGTGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTATGTGTGTTTTATTTATTTGTACACATTTT-CATATAATTATTGCATCATTT------GTTATATAAATTGT--AT---------CATGTTGTATCCTCAAGGGTCTTATGGCCTATTac
gi|9 : cGTTTTCGTGTTTTCGTTTTTTAACCTTATGAGAT-AAGGAAAAT--AATTTTCAGTTT-AACACAACTTGCTTGCAATGATATGTTTCTAGTTTATAT-ACGTATATCACTTTGAAA-A---------AAAAGCAACAGTTT---AAATG-TTTGGAATAC
gi|9 : AACAGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGATAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATtttcagcagcaaatggataaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
Alignments
lowQualScore : 1 1 44444444444444 1 1 2222 111111 22222222 44444444444 22 1 2222 111 444444444444 111111
lowQualScore : 3 0 66666666666666 3 0 3 1 7 0 1 5 1 0 4444 0 5 666666 44444444 1 1 4 4 9999 8 22222222222 22 3 4 7777 66 5 1 111 1 6 3 1 33 444 0 3 6 3 0 777777777777 1 222222 2 55 555 7
lowQualScore : . . .............. . . . . . . . . . . .... . . ...... ........ . . . . .... . ........... .. . . .... .. . . ... . . . . .. ... . . . . . ............ . ...... . .. ... .
lowQualScore : 3 0 22222222222222 5 2 0 0 3 8 7 7 4 7 3333 7 0 444444 22222222 4 2 4 4 4444 9 22222222222 44 3 4 9999 99 0 0 777 0 7 2 0 55 666 8 8 5 8 6 555555555555 9 888888 3 44 000 3
consensus : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Reference ( family-857 ) : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
gi|1 : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAAAAACTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACACTGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTGTCATC-A----GC-AAT-----------ACTAAATTATGATTA-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACAATTTAT
gi|10 : GTTTTCGTGTTTTCGTTTATTAACCTTGTGAGAC-AAGGAAGAT-AAAT-TTCAG-TTCAACACAACTTGCTTGCAATAATATGTTTCTAG-TTATAT-ACGTATA------T
gi|10 : AACCGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGCTAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATcactttgaaaaaaaggcaaccgtttaaatgtttggaatactttcagcagcaaatggctaaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|11 : gttttcgtgttttcgtttattaaccttgtgagacaaggaagataaatttcagttcaacacaacttgcttgcaataatatgtttctagttatatacgtatatcactttgaaaaaaaggcGTGTGTG---TTG--TG--TGTGTTTT------------ATCGCGTATGTGCATTGCACTCATTTGTACCTCTTTAACATATTATTACTGCACCATATGTAACAGTTGTATTAATTGTAATTA--CA--TGTATG-TATATCATATTGGTTCTGATGGCGTATTGGAA-GTTCTGAATAAACGATtaaa
gi|12 : GTGTATT------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTAACCTGTAATTACTGCATCATTT------GTTGTATCAACTGTAAATATGGA-TACTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGTA-TTTCGGAATAA
gi|13 : aatgtgtgtgaTTATGCATTGATGCAAATTCGAAAA------C-AAA---CTATAAAATGTCTTAGTGATTTCGTTTTTAAAGCTTTTGAGAAAAGGAAAAATTAAATATTCAG-TTAAATACAA----CTTACACTTATATGCT
gi|14 : aaaggcaacgtatttctaaacgtttagc------------AGTACGTCTGTGCGTTGTATTTAGTTGTACGCATTTCATATATAATTACTGTGCCATTT------GTTGTATCAATTGTAAATATGTA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTTTGAATAAAttc
gi|15 : AGTTCATATGT------ATGTGTTTATCCATGGTGC-AGT-----------CCT------TGAT---AT-ATATGTCACCGCCTCCGCACAAATAATACGATAACTATAAAACATTG-TTGTAATTATATGACACTGAAAAGACGAAA
gi|16 : ATTGTGGATCCGCCCTTGTAT-TTGTATCCTTACGGGGTATATAGCTCATTGGAA-TTT-TGAAGAAAAAATAT
gi|17 : ATGTTGTATCCTCATGGGTCTTATGGCCTA-TGGAATTTTCCGAATAAAgcataatataga
gi|2 : cTTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------C----------------------GTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTAACAAGTTTACATAATTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTTAATACAAATGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATT-GAA-ATATGTCACCTTCTCCCCACAAATAAGACGAAAATTACGAAACAGTG-TTATGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TGATact
gi|2 : TTGTATTTAGTTGTACACACTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatttagttgtacacacttcacatgtaattactgcaccatttgttgtatcaattgtaaatatgcatagtatgttgtatcctcatgggtcttatggcctattggaatttctgaataaacgata
gi|3 : ttaaatttttagcacttatgcaaagtcaaaacgtgttttcgtgtttaaagcttttgaaataaagaaaaatgaaatattcagttaacccaacttacaatgctatgtaacaagtttacataatttatatgaaatataaaaacaataacatagaaaacattttttaatacaaatgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagcaatactaaattatgattgaaatatgtcaccttctccccacaaataagacgaaaattacgaaacagtgttatgattatatgacactgaaatgaagaaaacaagaacatgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-TAT------------CTAAATTATGATT-GAA-ATATGTCACCTTCTCCGCATAAATAAGACGAAAATTACGAAACAG------TGATTATATGAAACTGAAATGAAGAAAA--CAAGAACA-TAATAA
gi|3 : CCTCATGGGTCTTATGGCCTATTAGAA-TTTCTGAATAAACGATATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcatgggtcttatggcctattagaatttctgaataaacgatatatgtatgtgatat
gi|4 : atattcagttaacccaacttacaatgctatgttacaagtttacataacttatatgaaatataaaaacaataacatagaaaacatttttgaatacaattgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagctatctaaattatgattgaaatatgtcaccttctccgcataaataagacgaaaattacgaaacagtgattatatgaaactgaaatgaagaaaacaagaacataataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTACATGTTTGG-AATATTGTAATC-A----GC-AAT-----------ACTAAAATATGATTG-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATATgtatgtgatat
gi|5 : TGCAAAGTA-AAAAAGAAAACAAAA---CTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAAAAGTTAAAAACAATAACAAAGAAAACTTTTTTGAATACAAATGCATCTTAATTCAATTATTGTATTAACAGTTTACATGTTTGG-AATATTTTCATC-A----GT-AAT-----------ACTAAACTGTGATT-GAA-ATATGTCATCTTTTCCGAACAAATAAGACGAAAATTACGAAACAATGTTT-TGATTATATAACACTGAAATGAAGAAAA--CAAGAACA-TTATAATTGTGTTT---ATGTGAGT-GCCTGTTCATGTGCAAATGTGTGCGTGCGa
gi|6 : TATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATAACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACG
gi|7 : ATATTTGGTAATATTT-CAT--A-------AAC-----------ACTAAATTATGATTGAAATATATGTCACCTTCTCTGCACAAAAAACAC-AAAATCATGAAATATTG-TTCTGATTATATGACATTGAAA-----------CAATGATA-TGATAATTG--------------------TGTT--TGTG----TATG------------CGTGTACATGTATGTGTGTGGGTTTGTATACATATATGTT------------AGCGCGTATGTGCGTTTTATTTATTTGTACACATTTT-CATGTAATTATTGGATCATTT------GTTATATAAACTGT--AT---CA-TC-----TTGTATCCTCAAGGGTCTTATGGCCTATTGGAATTTTCTGAATAAACAA
gi|8 : AAGA--AAAATTGC--AACAGT--------TTATAT---ATT----TGAAAAAAATTCAGAAACACTAA--ATTATGATTGCAATATATGTCACCTTCTC-CGCATAATTATGTTT---TGCGTGGGTGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTATGTGTGTTTTATTTATTTGTACACATTTT-CATATAATTATTGCATCATTT------GTTATATAAATTGT--AT---------CATGTTGTATCCTCAAGGGTCTTATGGCCTATTac
gi|9 : cGTTTTCGTGTTTTCGTTTTTTAACCTTATGAGAT-AAGGAAAAT--AATTTTCAGTTT-AACACAACTTGCTTGCAATGATATGTTTCTAGTTTATAT-ACGTATATCACTTTGAAA-A---------AAAAGCAACAGTTT---AAATG-TTTGGAATAC
gi|9 : AACAGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGATAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATtttcagcagcaaatggataaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
blockSeqs : T G AGAAAACAAAA A C T A T A T C CTTG A TCACTT TAAAAAGT A A T C TGGT A GGCTAAAATAA GC T T GTAA TT C G GCA C C A C GC NNN N N N NNNNNNNNNNNN A GTAACA A AT CTT T
blockSeqs : . . CAAA T A T A G A . A CTTG A . . T T . . . A GGATAAAATAA GA T . ATGA . . T . A . A C GT NNN N N N . A . A AT TA T
blockSeqs : . C . A G A G A . . . A . . T T . . . . . GC T . CTGA . . G . C . A C GC TGG G T C . A . A CC TA .
blockSeqs : C G . . A . . . A . . A T . . . . . G . . TGA . . T . T . . T . C G C C . A . G AT TA .
blockSeqs : . T . . T . . . . . . C . . . . . G . . TGA . . T . . . . . . . . . . A . A AT TT .
blockSeqs : . . . . . . C . . . . . G . . . . . . A . A AT TT .
blockSeqs : A . . . . . G . . . . . . . . A A TC .
blockSeqs : . . . . . . . . . . . . . T .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : TGA* ************
originalCons : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
finalCons : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TTTGA-TTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Alignments
lowQualScore : 1 1 44444444444444 1 1 2222 111111 22222222 44444444444 22 1 2222 111 444444444444 111111
lowQualScore : 3 0 66666666666666 3 0 3 1 7 0 1 5 1 0 4444 0 5 666666 44444444 1 1 4 4 9999 8 22222222222 22 3 4 7777 66 5 1 111 1 6 3 1 33 444 0 3 6 3 0 777777777777 1 222222 2 55 555 7
lowQualScore : . . .............. . . . . . . . . . . .... . . ...... ........ . . . . .... . ........... .. . . .... .. . . ... . . . . .. ... . . . . . ............ . ...... . .. ... .
lowQualScore : 3 0 22222222222222 5 2 0 0 3 8 7 7 4 7 3333 7 0 444444 22222222 4 2 4 4 4444 9 22222222222 44 3 4 9999 99 0 0 777 0 7 2 0 55 666 8 8 5 8 6 555555555555 9 888888 3 44 000 3
consensus : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
Reference ( family-857 ) : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAA---CTATTAGATGTCTTAGTGTTTTCGTNTTTAAAGCTTTTGAGATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATTGGAA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT-TGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAANTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGCGCGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATAT
gi|1 : TTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------CGAAAAAACTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACACTGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTGTCATC-A----GC-AAT-----------ACTAAATTATGATTA-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCGCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGTGCGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACAATTTAT
gi|10 : GTTTTCGTGTTTTCGTTTATTAACCTTGTGAGAC-AAGGAAGAT-AAAT-TTCAG-TTCAACACAACTTGCTTGCAATAATATGTTTCTAG-TTATAT-ACGTATA------T
gi|10 : AACCGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGCTAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATcactttgaaaaaaaggcaaccgtttaaatgtttggaatactttcagcagcaaatggctaaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa
gi|11 : gttttcgtgttttcgtttattaaccttgtgagacaaggaagataaatttcagttcaacacaacttgcttgcaataatatgtttctagttatatacgtatatcactttgaaaaaaaggcGTGTGTG---TTG--TG--TGTGTTTT------------ATCGCGTATGTGCATTGCACTCATTTGTACCTCTTTAACATATTATTACTGCACCATATGTAACAGTTGTATTAATTGTAATTA--CA--TGTATG-TATATCATATTGGTTCTGATGGCGTATTGGAA-GTTCTGAATAAACGATtaaa
gi|12 : GTGTATT------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTAACCTGTAATTACTGCATCATTT------GTTGTATCAACTGTAAATATGGA-TACTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGTA-TTTCGGAATAA
gi|13 : aatgtgtgtgaTTATGCATTGATGCAAATTCGAAAA------C-AAA---CTATAAAATGTCTTAGTGATTTCGTTTTTAAAGCTTTTGAGAAAAGGAAAAATTAAATATTCAG-TTAAATACAA----CTTACACTTATATGCT
gi|14 : aaaggcaacgtatttctaaacgtttagc------------AGTACGTCTGTGCGTTGTATTTAGTTGTACGCATTTCATATATAATTACTGTGCCATTT------GTTGTATCAATTGTAAATATGTA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTTTGAATAAAttc
gi|15 : AGTTCATATGT------ATGTGTTTATCCATGGTGC-AGT-----------CCT------TGAT---AT-ATATGTCACCGCCTCCGCACAAATAATACGATAACTATAAAACATTG-TTGTAATTATATGACACTGAAAAGACGAAA
gi|16 : ATTGTGGATCCGCCCTTGTAT-TTGTATCCTTACGGGGTATATAGCTCATTGGAA-TTT-TGAAGAAAAAATAT
gi|17 : ATGTTGTATCCTCATGGGTCTTATGGCCTA-TGGAATTTTCCGAATAAAgcataatataga
gi|2 : cTTAAATTTTTA-GCACTTATGCAAAGTC-AAAA------C----------------------GTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTAACAAGTTTACATAATTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTTAATACAAATGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-AAT-----------ACTAAATTATGATT-GAA-ATATGTCACCTTCTCCCCACAAATAAGACGAAAATTACGAAACAGTG-TTATGATTATATGACACTGAAATGAAGAAAA--CAAGAACA-TGATact
gi|2 : TTGTATTTAGTTGTACACACTTCACATGTAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TAGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatttagttgtacacacttcacatgtaattactgcaccatttgttgtatcaattgtaaatatgcatagtatgttgtatcctcatgggtcttatggcctattggaatttctgaataaacgata
gi|3 : ttaaatttttagcacttatgcaaagtcaaaacgtgttttcgtgtttaaagcttttgaaataaagaaaaatgaaatattcagttaacccaacttacaatgctatgtaacaagtttacataatttatatgaaatataaaaacaataacatagaaaacattttttaatacaaatgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagcaatactaaattatgattgaaatatgtcaccttctccccacaaataagacgaaaattacgaaacagtgttatgattatatgacactgaaatgaagaaaacaagaacatgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTATATGTTTGG-AATATTTTCATC-A----GC-TAT------------CTAAATTATGATT-GAA-ATATGTCACCTTCTCCGCATAAATAAGACGAAAATTACGAAACAG------TGATTATATGAAACTGAAATGAAGAAAA--CAAGAACA-TAATAA
gi|3 : CCTCATGGGTCTTATGGCCTATTAGAA-TTTCTGAATAAACGATATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcatgggtcttatggcctattagaatttctgaataaacgatatatgtatgtgatat
gi|4 : atattcagttaacccaacttacaatgctatgttacaagtttacataacttatatgaaatataaaaacaataacatagaaaacatttttgaatacaattgcatctaaattcaaatattgtattaacagtttatatgtttggaatattttcatcagctatctaaattatgattgaaatatgtcaccttctccgcataaataagacgaaaattacgaaacagtgattatatgaaactgaaatgaagaaaacaagaacataataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGTTTACATAACTTATA------TGAAATA--------TAAAAACAATAACATAGAAAACATTTTTGAATACAATTGCATCTAAATTCAAATATTGTATTAACAGTTTACATGTTTGG-AATATTGTAATC-A----GC-AAT-----------ACTAAAATATGATTG-AA-ATATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------AGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATTACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACGATATATgtatgtgatat
gi|5 : TGCAAAGTA-AAAAAGAAAACAAAA---CTATTAGATGTCTTAGTGTTTTCGTGTTTAAAGCTTTTGAAATAAAGAAAAATGAAATATTCAG-TT-AACCCAA----CTTACAATGCTATGTTACAAGTTTACATAACTTATA------TGAAATATAAAAAGTTAAAAACAATAACAAAGAAAACTTTTTTGAATACAAATGCATCTTAATTCAATTATTGTATTAACAGTTTACATGTTTGG-AATATTTTCATC-A----GT-AAT-----------ACTAAACTGTGATT-GAA-ATATGTCATCTTTTCCGAACAAATAAGACGAAAATTACGAAACAATGTTT-TGATTATATAACACTGAAATGAAGAAAA--CAAGAACA-TTATAATTGTGTTT---ATGTGAGT-GCCTGTTCATGTGCAAATGTGTGCGTGCGa
gi|6 : TATGTCACCTTCTCCGCACAAATAAGACGAAAATTACGAAACAGTG-TT--------ATGACACTGAAATGAAGAAAA--CAAGAACA-TAATAAGTGTGTTT---ATGTGCGT-GCCTGTTCATGTGCAAATATGTGCGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACGTCTGTGCGTTGTATTTAGTTGTACACATTTCACATGCAATAACTGCACCATTT------GTTGTATCAATTGTAAATATGCA-TTGTATGTTGTATCCTCATGGGTCTTATGGCCTATTGGAA-TTTCTGAATAAACG
gi|7 : ATATTTGGTAATATTT-CAT--A-------AAC-----------ACTAAATTATGATTGAAATATATGTCACCTTCTCTGCACAAAAAACAC-AAAATCATGAAATATTG-TTCTGATTATATGACATTGAAA-----------CAATGATA-TGATAATTG--------------------TGTT--TGTG----TATG------------CGTGTACATGTATGTGTGTGGGTTTGTATACATATATGTT------------AGCGCGTATGTGCGTTTTATTTATTTGTACACATTTT-CATGTAATTATTGGATCATTT------GTTATATAAACTGT--AT---CA-TC-----TTGTATCCTCAAGGGTCTTATGGCCTATTGGAATTTTCTGAATAAACAA
gi|8 : AAGA--AAAATTGC--AACAGT--------TTATAT---ATT----TGAAAAAAATTCAGAAACACTAA--ATTATGATTGCAATATATGTCACCTTCTC-CGCATAATTATGTTT---TGCGTGGGTGTACATGTATGTGTGTGGGTTTGCATGCATGTGTGTT------------AGCGCGTATGTGTGTTTTATTTATTTGTACACATTTT-CATATAATTATTGCATCATTT------GTTATATAAATTGT--AT---------CATGTTGTATCCTCAAGGGTCTTATGGCCTATTac
gi|9 : cGTTTTCGTGTTTTCGTTTTTTAACCTTATGAGAT-AAGGAAAAT--AATTTTCAGTTT-AACACAACTTGCTTGCAATGATATGTTTCTAGTTTATAT-ACGTATATCACTTTGAAA-A---------AAAAGCAACAGTTT---AAATG-TTTGGAATAC
gi|9 : AACAGTTTAAATGTTTGG-AATACTTTCAGC-A----GCAAATGGATAAAATAAACTAAATTATAATTGCAATATATATCACCCTCTCCGTAAAAATtttcagcagcaaatggataaaataaactaaattataattgcaatatatatcaccctctccgtaaaaattaaa