lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111
lowQualScore : 11 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 2222222 333 1 1 333 4444 111 2222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 555555555555555555555555555555555555555555555555555555555555555555555555 11 5555555555 11 00000
lowQualScore : 77 6 6 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 33 5 8888888 0 6 6 111 5 6 5 888 3 2222 888 2 2222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 8 0 22 555555555555555555555555555555555555555555555555555555555555555555555555 6 6 22 4 8888888888 6 6 22 6 00000 6 6
lowQualScore : .. . . .......................................................................................................... . .. . ....... . . . ... . . . ... . .... ... . .... ...................................................................................... . . . . .. ........................................................................ . . .. . .......... . . .. . ..... . .
lowQualScore : 00 7 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 00 2 4444444 6 0 0 555 0 0 0 555 0 0000 555 5 5555 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 0 0 88 999999999999999999999999999999999999999999999999999999999999999999999999 0 0 00 0 0000000000 0 0 00 0 00000 0 0
consensus : NATGCG-TATACTGTCGGCTCGG-----ACAATNCAGT-TGTTTTCT---GCACGAGTAATTTTCAAT-ACT-----------TG-A-TA-TATAAANCAACGN-GAACTATCAAG--CGT-N---TACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTTGNAAAATGCTGGATCGTTACCTTAGTGGTTCNACCTCTG-TTTNTATTNAGATANTGGCATGCTGTTCCATTGCATNTAGCTTCGCGTAATN--TAATTATATAAGTA-AGTTTNTGTGACNTA-T-----GCCNG----CGACTTAAACAATGTTGTGAT-CCTCGCGATGGCTT-C-NGG--ATATGAGTT------------ATAGATAGAATCACT-GTTA---TTACTTTT----T-TTA---TTTTTCCACCGAAAANAGCCAGTACGAGGTACCAGTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( gi|2 ) : TATGTG-TATAGTGTCAGCTAGG-----ACAATAAAA--------CT---GCACAAGTACTTTCCGGT-ACT-----------TAAA-TA-TATAAAGCAACTA-GAACTATCA----CAT-T---TACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCTGT--AATGCTGGATCGTCACATTAGT-A-TCTACCTTCGTTTTTTTTTCAAATACTCACAT----CTCCATGGCATATAACATTGTATA-TG--TAATTACATAAGTA-AGTTTCTATGACATA-T-----ACCAG----TAAATAAAACAATGTTGTGAT-CGTCATGATGGCTT-C-CGG--ATATGCGGT------------ATACATAGAATTACCCGTTACAATTACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTAATATTTTCATTCATGTC--C--ATTTTTTGTATA
gi|11 : ATGTGATATAGTGTTGGCTCGG-----ACAATACAATATATTTTCT---CAACGAGTAATTTTCAGT-TCT-----------CGTA-TA-TATAATGCAACAC-GAACT-TTA----AAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTAT
gi|1 : ATGTT-TATACTGACAGCTTGG-----A-AATGCAGTTTGTTTTCT---GCACTAGTAGTTTTCAATCACTATCTATTCATATAAAGTAGTATAAACCAAGAA-GAA--A--A----CA--------CCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAa
gi|4 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacTGCA-CATACTGTCAGCTTGGAGAACACAATTAAG--------TTTTGGCATGAGTAATTTCCAAT-ACC-----------T--A-TA-CAT-AAGCAATGT-GAACAATCAAGTGCGTGG---TA---ACATGGAGCCGTTCTAAATataaaaatgtctcgactgttatctgtgtttcaattcaaaattgatgtgtagtttgcattatcttaacttcatgtagcttcacataatgaataattatttaaatagattttgtgaccttcgaatttaaaaatgttgtgattcgactggtcactcctggggatatgagttataaatagaatcactagtttttatttttacaatgctgttttttcactgaaaatagaaaagtaccagtattcccattcatgccgactgactctttgtatgca
gi|6 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatA-CA-TATAAATCA-CTGTGAACTATCA----AGT-TGG-TTGCTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACAC
gi|15 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgtgcttgaacaaaaacaatttattttccgcatgagtaattctcaataaaaacatgtgttt-GAACTATGAAG--TGT-G---TACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTTGA--AATGttttcggcaagcttggtgtta
gi|9 : tcatatgaaatatatctatatataccATATCATCT--TTA-GTGTTTTGTAAATATTTGTAAAAT-CTGAATCGTTATCTTAGT-GTTCTACCTCTG-TTTGTATTAAAATATT
gi|8 : tTGGATCGTTACCTTAGTGA-TCGACCTCTG-TTTCTATTCAGATAATGGCATGCTGTTCCATTGCATTTA----TGTGTA-TC--T--TCACACAA-TACAGTCGTTAT--CATT-TAGGTGACCAAAACTTCAAC-AAACAATCTTGTAAT-CCTCACGATGGCTCAT-AAG--ATTTGAGTT------------ATACCTTGGATT----GTTA-----ACTTTA----T-TTA---gtcatgttgttctgtttgtatatcatcatttgtacacgttgttgtccttgacaaaattaatcaaatattgatgtaagtttagtgatcaatacgatcttgt
gi|1 : CATGTAGCTTCACATAATGAATAATTATTTAAATA-GATTT-TGTGACCT---------TCG------AATTTAAA-AATGTTGTGATTCGAC-TGGTCACTC-C-TGGGGATATGAGTT------------ATAAATAGAATCACTAGTT---TTTATTTTTACAATGCTG---TTTTTTCACTGAAAATAG------AAAAGTACCAGTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|7 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacatgtttatactgacagcttggaaatgcagtttgttttctgcactagtagttttcaatcactatctattcatataaagtagtataaaccaagaagaaaacacctacatgaacctgttctagatatcatcttttatgctttgtgtgcacaataaaaatgtctcgactgttatctgtgtttcaattcaaaattgatgtgtagtttgcattatcttaactt--TAATTATATAAGTT--GTTTATGTGGCCAA-T-----ACCTG----TGACTTTAACAATGTTGTGAT-CCTCGCGATGCTCT-T-AGT--GTATGAGATTTTTATTTTTAAATAAATACTAGTATTCTTTACAATTACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCCAGTACGAGGTATTgca
gi|12 : TATATAAG---ATTTTATGTGATAAA-T-----GCATG----TGACTTTAACAATGTTGTGAT-CCTCGCAATGGCTT-C-TGGT-ACAAGAGTT------------ATAGACAGAATCACcctatacatgctgacttttatacgacaaaatgccacttta
gi|13 : taATGAGTA---TTTTTGTGAC-TACT-----GCCAG----CAATTTAA-CAATG-----AT-CCTTGCCATGGCTT-CTCGT--ATGTGAGTT------------CTAGATAGAAtgcgatatgtatttttaagtaaatatacgttactataac
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TGTCCATTCTTTAGACTTTTTCCCCCTCCTTATCGTGGTCTATAGATCTCAGAAAAAAAATCTTTTAACTCAAAACCGACGTTTGATTTCAGTAAAGGTTCACTTTTAATATTATTCAAGTGTCTACACATAAACGAAACACGTACATAACATCTAATTTTATCGTCTATCTTGCAATATGTGCCAGTACTCAAACCGATAAGTTCAATGGTGAATAACAAAATATGAAGGCTCTATACGGACAGATTAGAACATACACTTTATTTTCCGCACAGGTAATTACAATTAATCTTATACTATATACATGTATAAAGCAATGTGAACTTCCAAGTGTATACAAACCTGTTCTTAATATAATATATCATGTTTTTTTACAGGTTTAGAAAGTCTGACCTGTTAT
Unaligned ( gi|5 ): TCATCTATTATGTTTTTGCAGACGTTTGAAAAGTCTTGAAAGTTATCTTAGTGGTGTAAATCTGTTTTCTATTCAAATACGAACAGGATGATGCTCTGTTGCCTATCTTTATTTACACAACGTACTTTCACAGAGTAAGTAGATATATGAGTATTTTTGTGTTCAATACTTGTTTATTTAATAATGATGGGATCTTTGCGACGGCTCCTGGGTTGTGAATTATAAAGATAATCAACACGATTTTCATTTTTCAGTAAATACTCG
Unaligned ( gi|10 ): CAGATAATGTCCATTATGCTCTGTGCACATGTTTGAAATGCCTGGGCCTTTATCTTTGTGATCGAACTTCCTTTGCATTCGAACAATACCGTTTTGTTCCGTTAAATGTCTTTACTTCCACACGCTGTGTACCTTCACATAAATGTACACAAGTAACTATGTAAGA
Unaligned ( gi|14 ): AAAGTGTGAATCGTTACCTTAGGGATCCAACTCTGATTCCATTCAAATATTGACATGATATTCTGTTTCATACTTTTACACGTTGTGTACTGTCGCGTAATACTATTATTATAT
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 111 3333333 1111 555555555555555555555555555555555555 11 22222 111 111 222222 999999999999999999999999999999999999999999999999999 111 22222 2222 222222222222 111 11111 1111 1111 555555555555555555555 1111 111 333333333333
lowQualScore : 000 1 2 4 6 77 7777777 4 4444 333333333333333333333333333333333333 22 777 0 00 11 222 0 11 5 3 4 4 0 77 1 00000 3 666 666 6 3 77 3 111 1 2 000000 6 6 333333333333333333333333333333333333333333333333333 8 444 11111 99 5 7777 6 111111111111 0 000 1 77 44444 666 2222 2222 4 5 888888888888888888888 2222 6 111 1 6 222222222222 6 99
lowQualScore : ... . . . . .. ....... . .... .................................... .. ... . .. .. ... . .. . . . . . .. . ..... . ... ... . . .. . ... . . ...... . . ................................................... . ... ..... .. . .... . ............ . ... . .. ..... ... .... .... . . ..................... .... . ... . . ............ . ..
lowQualScore : 222 4 8 8 7 77 0000000 2 2222 111111111111111111111111111111111111 77 444 7 77 33 000 3 00 0 1 5 3 4 99 0 99999 4 000 888 7 3 77 3 777 0 2 333333 7 7 444444444444444444444444444444444444444444444444444 0 000 66666 22 7 1111 6 777777777777 4 000 7 99 99999 777 1111 1111 0 7 999999999999999999999 1111 7 777 0 7 333333333333 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAAT-TT-ATTTTCCGCACGAGTAATT----TTCA----AT-A----C-----TT--A-T------A----TATAAAGCAACGTGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCTG-TTTCTATTC-AAAT---ANTGACATG-----CTGTTC-CG-T-----TG---------C-----------------A-----TGTA-G-----CT-TCGC---GTAAT--GTA--ATTA-TATAAGTA--TTTNTGTGACCNA-TGCCTGCGACTTA---AACAATGTTGTGATCCTCG--CGATGGCTC-C--NGG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAGT--GANGCACCAGTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCGGCTCGGACAATN-CAGT-T--GTTTTCTGCACGAGTAATT----TTCA----AT-A----C-----TTG-A-T------A----TATAAANCAACGNGAACTATCAAG-CGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAATG-CTGGATCGTTACCTTAGTGGTTCNACCTCTG-TTTNTATTN-AGAT---ANTGGCATG-----CTGTTC-CA-T-----TG---------C-----------------A-----TNTA-G-----CT-TCGC---GTAAT--NTA--ATTA-TATAAGTAAGTTTNTGTGACNTA-TGCCNGCGACTTA---AACAATGTTGTGATCCTCG--CGATGGCTT-C--NGG-A-TATGAG----TTA----TAGATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCACCGAAAANAGCCAGTACGAGGTACCAGTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGT-TT-GTTTTCTGCACTAGTAGTT----TTCA----ATCA----C-----T---A-TCTATTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAAT----AAAAATGTCTCGACTGTTATCT--GTGTTTCA-------------ATTC-AAA----ATTGATGTG-----TAGTTTGCA-T-----TATCTTAACTTC-----------------A-----TGTA-G-----CT-TCAC---ATAATGAATA--ATTA-TTTAAATAGATTT-TGTGACCTT-CG-----AATTTA---AA-AATGTTGTGAT--TCGACTGGTCACTC-CTGGGG-A-TATGAG----TTA----TAAATAGA-ATCA-CTAGT--T-------TT-TATTTTTACAATGCTG---TTTTTTCACTGAAAATAG--A----AAAGTACCAGTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|11 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacATGTGATATAGTGTTGGCTCGGACAATA-CAATAT--ATTTTCTCAACGAGTAATT----TTCA----GT-T----C-----TCGTA-T------A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTATgca
gi|12 : TA-TATAAG--ATTTTATGTGATAAA-TGCATGTGACTTT---AACAATGTTGTGATCCTCG--CAATGGCTT-C--TGGTA-CAAGAG----TTA----TAGACAGA-ATCA-CT-GCGAT-------ATGTATTTTT----a
gi|13 : taATGAGTA--TTTTTGTGAC-TACTGCCAGCAATTTA---A-CAATG-----ATCCTTG--CCATGGCTT-CT-CGT-A-TGTGAG----TTC----TAGATAGA-AATG-CT-G----------------CGGCT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTG--TGAATCGTTACCTTAG-GGATCCAACTCTG-ATTCCATTC-AAAT---ATTGACATGATATTCTGTTT-CA-TACTTTTA---------C-----------------ACGTTGTGTA-------CTGTCGC---GTAATA-CTATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : -T------A----TATATACC-----GAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTT--GAAA
gi|2 : tcatatgaaatatatcATGTG-TATAGTGTCAGCTAGGACAATA-AAA----------CTGCACAAGTACTT----TCCG----GT-A----C-----TTA-AAT------A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCT--GTAA--TG-CTGGATCGTCACATTAGTA--TCTACCTTCG-TTTTTTTTTCAAAT---ACTCACAT---------CTC-CA-T-----GG---------C-----------------A-----TATA-A-----CA-TTGT---ATA-T--GTA--ATTA-CATAAGTAAGTTTCTATGACATA-TACCAGTAAATAA---AACAATGTTGTGATCGTCA--TGATGGCTT-C--CGG-A-TATGCG----GTA----TACATAGA-ATTACCC-GT--TACA----AT-TACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTAATATTTTCATTCATGTC--C--ATTTTTTGTATtg
gi|3 : t-TATACGGACAGATTAGAACATA-CACT-TT-ATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----C-----TAT-A-T------ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TCATGTTTT-TTTACAGGTTT--AGAAAGT--CTGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAAT-TAAGTTTTG-GCATGAGTAATT----TCCA----AT-A----C-----CT--A-T------A----CATAA-GCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TTATGTTTT-TGCAGACGTTT--GAAAAGT--CTTGAAAGTTATCTTAGTGGTGTAA-ATCTGTTTTCTATTC-AAATACGAACAGGATG-----ATGCTC-TG-T-----TG---------CCTATCTTTATTTACACAA-----CGTA-C-----TT-TCACAGAGTAA---GTA--GATA-TATGAGTA--TTTTTGTGTTCAA-TACTTG---TTTATTTAATAATGATGGGATCTTTG--CGACGGCTC-C--TGG-GTTGTGAA----TTA----TAAAGATA-ATCA----------------A--CACGATT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAAT-TT-ATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTTT-A-C------A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACACTTTTCGGCAA---G-CTTGGT-GTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgtTA--ATTA-TATAAGTT-GTTTATGTGGCCAA-TACCTGTGACTTT---AACAATGTTGTGATCCTCG--CGATGCTCT-T--AGT-G-TATGAGATTTTTATTTTTAAATAAATACTA-GT-AT--TCTTTACAAT-TACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCCAGTACGAG------GTATTCCTATACATGCTGACT
gi|8 : TGGATCGTTACCTTAGTGAT-CGACCTCTG-TTTCTATTC-AGAT---AATGGCATG-----CTGTTC-CA-T-----TG---------C-----------------A-----TTTATGTGTATCT-TCAC---ACAAT--ACA--GTCGTTATCA-----TTTAGGTGACCAA-AACTT-CAAC--A---AACAATCTTGTAATCCTCA--CGATGGCTCAT--AAG-A-TTTGAG----TTA----TACCTTGG-AT----T-GT--T-------A---ACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TAGTGTTTTGT--AAATATTT--GTAAAAT--CTGAATCGTTATCTTAGTG-TTCTACCTCTG-TTTGTATTA-AAAT---ATTGTCATG-----TTGTTC-TGTT-----TG---------T-----------------A-----TAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAGATAATGTCCATTATGCTCTGTGCACATGTTTGAAATGCCTGGGCCTTTATCTTTGTGATCGAACTTCCTTTGCATTCGAACAATACCGTTTTGTTCCGTTAAATGTCTTTACTTCCACACGCTGTGTACCTTCACATAAATGTACACAAGTAACTATGTAAGA
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111 1111 1111 33333333333333333 1111 2222222 22222 111 11111111111111111111111111111111111111111111 1 111 11 111111 1111 2222 1111 1111 555555555555555555555 1111 111 444444444 1
lowQualScore : 000 1 6 6 2 4444 2222 88888888888888888 88888 2222 5 0 5 11 222 0 4 3 2 2 66 1 1111111 1 1 00000 33 5 5 0 1 0 000 88 5 11111111111111111111111111111111111111111111 3 8 444 0 0 55 99 5 2 000000 1 6 2 55555 1 9999 77 0 5 5 1 0000 2222 2222 1 5 888888888888888888888 2222 6 111 0 6 888888888 3 3 6 99
lowQualScore : ... . . . . .... .... ................. ..... .... . . . .. ... . . . . . .. . ....... . . ..... .. . . . . . ... .. . ............................................ . . ... . . .. .. . . ...... . . . ..... . .... .. . . . . .... .... .... . . ..................... .... . ... . . ......... . . . ..
lowQualScore : 222 4 7 7 2 2222 1111 99999999999999999 99999 1111 3 7 7 33 000 3 4 4 9 5 99 0 2222222 9 4 00000 77 7 7 1 0 3 000 33 7 99999999999999999999999999999999999999999999 2 0 000 8 8 88 22 7 3 666666 0 6 7 33333 7 1111 99 7 7 7 0 3333 1111 1111 0 7 999999999999999999999 1111 7 777 7 7 000000000 7 3 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-C-TGGATCGTTACCTTAGTGGTTCNACCTCCG-TTT-CTATTCAAATANTGAC---GTGNTGTTC-CGTTG---------C-----------------A---------------TGTANCT-TCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGACTTN---AACAATGTTGTGATCCTCG--CGATGGC-TC-CCGG--A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAAT---A-GCACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGTGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-C-TGGATCGTTACCTTAGTGGTTCNACCTCTG-TTT-CTATTCAAATANTGAC---ATGCTGTTC-CGTTG---------C-----------------A---------------TGTAGCT-TCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCNATGCCTGCGACTTA---AACAATGTTGTGATCCTCG--CGATGGC-TC-CNGG--A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAGT--GANGCACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGTTTGTTTTCTGCACTAGTAGTT----TTCA----ATCA----------CTATCTA--TTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAAT----AAAAATGTC-TCGACTGTTATCT-----GT---------G-TTT-CAATTCAAA-ATTGAT---GTGTAGTTTGCATTATCTTAACTTC-----------------A---------------TGTAGCT-TCAC---ATAATGAATA--ATTA-TTTAAAT-A--GATTTTGTGACC------TTCGAATTT---AAAAATGTTGTGAT--TCGACTGGTCAC-TC-CTGGGGA-TATGAG----TTA----TAAATAGA-ATCA-CTAGT--T-------TT-TATTTTTACAATGCTG---TTTTTTCACTGAAAATAG--AA----AAGTACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|10 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacAGATAATGTCCA-TTATGCTCTGTGCACATGTTT--GAAA--TG-CCTGGGCCTTTATCTTTGTGATCGAACTTCC--TTT-GCATTCGAACAATACC---GTTTTGTTC-CGTTA---------A-----------------A---------------TGTgca
gi|11 : cATGTGATATAGTGTTGGCTCGGACAATA-CAATATATTTTCTCAACGAGTAATT----TTCA----GT-T----------CTCG-TA--T--A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTATctttacttccacacgctgtgtaccttcacataaatgtacacaagtaactatgtaaga
gi|12 : TA-TATAAGA-T--T-TTATGTGATAAATGCATGTGACTTT---AACAATGTTGTGATCCTCG--CAATGGC-TT-CTGGT-A-CAAGAG----TTA----TAGACAGA-ATCA-CT-GCGAT-------ATGTATTTTT----a
gi|13 : taATGAGT-A--T-TTTTGTGACTACTGCCAGCAATTT----AACAA-----TGATCCTTG--CCATGGCTTC-TCGT--A-TGTGAG----TTC----TAGATAGA-AATG-CT-G----------------CGGCT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTG---TGAATCGTTACCTTAG-GGATCCAACTCTG-ATT-CCATTCAAATATTGAC---ATGATATTC-TGTTT---------C-----------------ATACTTTTACACGTTGTGTA-CTGTCGC---GTAATAC-TATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : ----AT-A----------TC---TA--T--A----TATA------C-CGAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTT--GAAA
gi|2 : tcatatgaaatATGTG-TATAGTGTCAGCTAGGACAATA-AAA--------CTGCACAAGTACTT----TCCG----GT-A----------CT---TAAAT--A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCT--GTAA--TG-C-TGGATCGTCACATTAGTA--TCTACCTTCGTTTT-TTTTTCAAATACTCAC---AT----CTC-CATGG---------C-----------------A---------------TATAACA-TTGT---AT-ATG--TA--ATTA-CATAAGT-AAGT-TTCTATGACATATACCAGTAAATAA---AACAATGTTGTGATCGTCA--TGATGGC-TT-CCGG--A-TATGCG----GTA----TACATAGA-ATTACCC-GT--TACA----AT-TACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTA-ATATTTTCATTCATGTC--C--ATTTTTTGTATtg
gi|3 : t-TATACGGACAGATTAGAACATA-CACTTTATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----------CTA--TA--T--ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TCATGTTTT-TTTACAGGTTT--AGAAAGT--C-TGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAATTAAGTTTTGGCATGAGTAATT----TCCA----AT-A----------CC---TA--T--A----CAT-AAGCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TTATGTTTT-TGCAGACGTTT--GAAAAGT--C-TTGAAAGTTATCTTAGTGGTGTAAA-TCTG-TTTTCTATTCAAATACGAACAGGATGATGCTC-TGTTG---------CCTATCTTTATTTACACAA---------------CGTACTT-TCACAGAGTAA-G--TA--GATA-TATGAGT-A--T-TTTTGTGTTCAATACTTG---TTTATTTAATAATGATGGGATCTTTG--CGACGGC-TC-CTGG--GTTGTGAA----TTA----TAAAGATA-ATCA----------------A--CACGATT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAATTTATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTT---TA--C--A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACACTTTTCGGCAA---G-C-TTGGT-GTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgt--TA--ATTA-TATAAGTTG--T-TTATGTGGCCAATACCTGTGACTTT---AACAATGTTGTGATCCTCG--CGAT-GC-TC-TTAGT-G-TATGAGATTTTTATTTTTAAATAAATACTA-GT-AT--TCTTTACAAT-TACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCCAGT-------ACGAGGTATTCCTATACATGCTGACT
gi|8 : -TGGATCGTTACCTTAGTGAT-CGACCTCTG-TTT-CTATTCAGATAATGGC---ATGCTGTTC-CATTG---------C-----------------ATTTATG---------TGTATCT-TCAC---ACAATA--CA--GTCGTTAT---C-A--T-TTAGGTGACCAAAACTT-CAAC--A---AACAATCTTGTAATCCTCA--CGATGGC-TCATAAG--A-TTTGAG----TTA----TACCTTGG-AT----T-GT--T-------A---ACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TAGTGTTTTGT--AAATATTT--GTAAAAT--C-TGAATCGTTATCTTAGTG-TTCTACCTCTG-TTT-GTATTAAAATATTGTC---ATGTTGTTC-TGTT--------------------------------------------TGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111 1111 1111 33333333333333333 1111 2222222 22222 1111 11111111111111111111111111111111111111111111 111 11 111111 1111111111 1111 1111 555555555555555555555 1111 111 4444444444 1
lowQualScore : 000 1 6 6 2 4444 2222 88888888888888888 88888 2222 88 0 5 11 222 0 4 3 2 2 66 1 1111111 1 33333 33 2 5 5 0 1 0 1111 33 5 11111111111111111111111111111111111111111111 1 1 444 0 0 55 99 5 2 000000 1 555 0 0 7 1 77 0 5 3333333333 2222 2222 1 5 888888888888888888888 2222 6 111 0 6666666666 0 1 3 6 99
lowQualScore : ... . . . . .... .... ................. ..... .... .. . . .. ... . . . . . .. . ....... . ..... .. . . . . . . .... .. . ............................................ . . ... . . .. .. . . ...... . ... . . . . .. . . .......... .... .... . . ..................... .... . ... . .......... . . . . ..
lowQualScore : 222 4 7 7 2 2222 1111 99999999999999999 99999 1111 00 7 7 33 000 3 4 4 9 5 99 0 2222222 9 44444 77 7 7 7 1 0 3 4444 77 7 99999999999999999999999999999999999999999999 0 0 000 8 8 88 22 7 3 666666 0 000 7 4 9 0 99 7 7 7777777777 1111 1111 0 7 999999999999999999999 1111 7 777 7 7777777777 7 0 3 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-C-TGGATCGTTACCTTAGTGGTTCNACCTCCG-TTT-CTATTCAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGANTTTAACAATGTTGTGATCCTCG--CGATGGC-TC-CC--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-C-TGGATCGTTACCTTAGTGGTTCNACCTCCG-TTT-CTATTCAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGACTTNAACAATGTTGTGATCCTCG--CGATGGC-TC-CC--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA-TA---GCACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGTTTGTTTTCTGCACTAGTAGTT----TTCA----ATCA----------CTATCTA--TTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAAT----AAAAATGTC-TCGACTGTTATCT--GT------------G-TTT-CAATTCAAA-ATTGATG---TGTAGTTTGCATTATCTTAACTTC-----------------A---------------TGTAGCTTCAC---ATAATGAATA--ATTA-TTTAAAT-A--GATTTTGTG------ACCTTCGAATTTAAAAATGTTGTGAT--TCGACTGGTCAC-TC-CTGGGG-A-TATGAG----TTA----TAAATAGA-ATCA-CTAGT--T-------TT-TATTTTTACAATGCTG---TTTTTTCACTGAAAATAG--AA-AA---GTACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|10 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacAGATAATGTCCA-TTATGCTCTGTGCACATGTTT--GAAA--TG-CCTGGGCCTTTATCTTTGTGATCGAACTTCC--TTT-GCATTCGAACAATACCG---TTTTGTTC-CGTTA---------A-----------------A---------------TGTgca
gi|11 : cATGTGATATAGTGTTGGCTCGGACAATA-CAATATATTTTCTCAACGAGTAATT----TTCA----GT-T----------CTCG-TA--T--A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTATctttacttccacacgctgtgtaccttcacataaatgtacacaagtaactatgtaaga
gi|12 : TA-TATAAGA-T--T-TTATGTGATAAATGCATGTGACTTTAACAATGTTGTGATCCTCG--CAATGGC-TT-CT--GGTA-CAAGAG----TTA----TAGACAGA-ATCA-CT-GCGAT-------ATGTATTTTT----a
gi|13 : taATGAGT-A--T-TTTTGTGACTACTGCCAGCAA-TTTAACAA-----TGATCCTTG--CCATGGCTTC-TC--GT-A-TGTGAG----TTC----TAGATAGA-AATG-CT-G----------------CGGCT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTG---TGAATCGTTACCTTAG-GGATCCAACTCTG-ATT-CCATTCAAATATTGACA---TGATATTC-TGTTT---------C-----------------ATACTTTTACACGTTGTGTACTGTCGC---GTAATAC-TATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : ----AT-A----------TC---TA--T--A----TATA------C-CGAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTT--GAAA
gi|2 : tcatatgaaatATGTG-TATAGTGTCAGCTAGGACAATA-AAA--------CTGCACAAGTACTT----TCCG----GT-A----------CT---TAAAT--A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCT--GTAA--TG-C-TGGATCGTCACATTAGTA--TCTACCTTCGTTTT-TTTTTCAAATACTCACA---T----CTC-CATGG---------C-----------------A---------------TATAACATTGT---AT-ATG--TA--ATTA-CATAAGT-AAGT-TTCTATGACATATACCAGTAAATAAAACAATGTTGTGATCGTCA--TGATGGC-TT-CC--GG-A-TATGCG----GTA----TACATAGA-ATTACCC-GT--TACA----AT-TACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTA-ATATTTTCATTCATGTC--C--ATTTTTTGTATtg
gi|3 : t-TATACGGACAGATTAGAACATA-CACTTTATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----------CTA--TA--T--ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TCATGTTTT-TTTACAGGTTT--AGAAAGT--C-TGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAATTAAGTTTTGGCATGAGTAATT----TCCA----AT-A----------CC---TA--T--A----CAT-AAGCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TTATGTTTT-TGCAGACGTTT--GAAAAGT--C-TTGAAAGTTATCTTAGTGGTGTAAA-TCTG-TTTTCTATTCAAATACGAACAGGATGATGCTC-TGTTG---------CCTATCTTTATTTACACAA---------------CGTACTTTCACAGAGTAA-G--TA--GATA-TATGAGT-A--T-TTTTGTGTTCAATACTTGTTTATTTAATAATGATGGGATCTTTG--CGACGGC-TC-CT--GG-GTTGTGAA----TTA----TAAAGATA-ATCA----------------A--CACGATT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAATTTATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTT---TA--C--A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACACTTTTCGGCAA---G-C-TTGGT-GTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgt--TA--ATTA-TATAAGTTG--T-TTATGTGGCCAATACCTGTGACTTTAACAATGTTGTGATCCTCG--CGAT-GC-TC-TT--AGTG-TATGAGATTTTTATTTTTAAATAAATACTA-GT-AT--TCTTTACAAT-TACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCC----A---GTACGAGGTATTCCTATACATGCTGACT
gi|8 : -TGGATCGTTACCTTAGTGAT-CGACCTCTG-TTT-CTATTCAGATAATGGCA---TGCTGTTC-CATTG---------C-----------------ATTTATG---------TGTATCTTCAC---ACAATA--CA--GTCGTTAT---C-A--T-TTAGGTGACCAAAACTT-CAAC--AAACAATCTTGTAATCCTCA--CGATGGC-TCATA--AG-A-TTTGAG----TTA----TACCTTGG-AT----T-GT--T-------A---ACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TAGTGTTTTGT--AAATATTT--GTAAAAT--C-TGAATCGTTATCTTAGTG-TTCTACCTCTG-TTT-GTATTAAAATATTGTCA---TGTTGTTC-TGTT--------------------------------------------TGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111 1111 1111 33333333333333333 1111 22222 22222 1111 11111111111111111111111111111111111111111111 111 11 111111 11111111111 1111 1111 555555555555555555555 1111 111 4444444444 1
lowQualScore : 000 1 6 6 2 4444 2222 88888888888888888 88888 2222 88 0 5 11 222 0 4 3 2 2 66 1 55555 1 33333 33 2 5 5 0 1 0 1111 33 5 11111111111111111111111111111111111111111111 1 1 444 0 0 55 99 5 2 000000 1 555 0 5 1 1 77 0 77777777777 2222 2222 1 5 888888888888888888888 2222 6 111 0 4444444444 1 3 6 99
lowQualScore : ... . . . . .... .... ................. ..... .... .. . . .. ... . . . . . .. . ..... . ..... .. . . . . . . .... .. . ............................................ . . ... . . .. .. . . ...... . ... . . . . .. . ........... .... .... . . ..................... .... . ... . .......... . . . ..
lowQualScore : 222 4 7 7 2 2222 1111 99999999999999999 99999 1111 00 7 7 33 000 3 4 4 9 5 99 0 55555 9 44444 77 7 7 7 1 0 3 4444 77 7 99999999999999999999999999999999999999999999 0 0 000 8 8 88 22 7 3 666666 0 000 7 3 0 7 99 7 11111111111 1111 1111 0 7 999999999999999999999 1111 7 777 7 0000000000 0 3 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCG-TTT-CTATTCAAATANTGAC---GTGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGAATTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCG-TTT-CTATTCAAATANTGAC---GTGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGANTTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGTTTGTTTTCTGCACTAGTAGTT----TTCA----ATCA----------CTATCTA--TTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAAT----AAAAATGTCTCGACTGTTATCT--GT------------G-TTT-CAATTCAAA-ATTGAT---GTGTAGTTTGCATTATCTTAACTTC-----------------A---------------TGTAGCTTCAC---ATAATGAATA--ATTA-TTTAAAT-A--GATTTTGTG------ACCTTCGAATTTAAAAATGTTGTGAT--TCGACTGGTCACTC-C-TGGGG-A-TATGAG----TTA----TAAATAGA-ATCA-CTAGT--T-------TT-TATTTTTACAATGCTG---TTTTTTCACTGAAAATAG-AAA--A---GTACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|10 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacAGATAATGTCCA-TTATGCTCTGTGCACATGTTT--GAAA--TGCCTGGGCCTTTATCTTTGTGATCGAACTTCC--TTT-GCATTCGAACAATACC---GTTTTGTTC-CGTTA---------A-----------------A---------------TGTgca
gi|11 : cATGTGATATAGTGTTGGCTCGGACAATA-CAATATATTTTCTCAACGAGTAATT----TTCA----GT-T----------CTCG-TA--T--A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTATctttacttccacacgctgtgtaccttcacataaatgtacacaagtaactatgtaaga
gi|12 : TA-TATAAGA-T--T-TTATGTGATAAATGCATGTGACTTTAACAATGTTGTGATCCTCG--CAATGGCTT-C-T--GGTA-CAAGAG----TTA----TAGACAGA-ATCA-CT-GCGAT-------ATGTATTTTT----a
gi|13 : taATGAGT-A--T-TTTTGTGACTACTGCCAGC-AATTTAACAATG-----ATCCTTG--CCATGGCTT-CTC--GT-A-TGTGAG----TTC----TAGATAGA-AATG-CT-G----------------CGGCT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTG--TGAATCGTTACCTTAG-GGATCCAACTCTG-ATT-CCATTCAAATATTGAC---ATGATATTC-TGTTT---------C-----------------ATACTTTTACACGTTGTGTACTGTCGC---GTAATAC-TATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : ----AT-A----------TC---TA--T--A----TATA------C-CGAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTT--GAAA
gi|2 : tcatatgaaatATGTG-TATAGTGTCAGCTAGGACAATA-AAA--------CTGCACAAGTACTT----TCCG----GT-A----------CT---TAAAT--A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCT--GTAA--TG-CTGGATCGTCACATTAGTA--TCTACCTTCGTTTT-TTTTTCAAATACTCAC---AT----CTC-CATGG---------C-----------------A---------------TATAACATTGT---AT-ATG--TA--ATTA-CATAAGT-AAGT-TTCTATGACATATACCAGTAAATAAAACAATGTTGTGATCGTCA--TGATGGCTT-C-C--GG-A-TATGCG----GTA----TACATAGA-ATTACCC-GT--TACA----AT-TACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTA-ATATTTTCATTCATGTC--C--ATTTTTTGTATtg
gi|3 : t-TATACGGACAGATTAGAACATA-CACTTTATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----------CTA--TA--T--ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TCATGTTTT-TTTACAGGTTT--AGAAAGT--CTGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAATTAAGTTTTGGCATGAGTAATT----TCCA----AT-A----------CC---TA--T--A----CAT-AAGCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TTATGTTTT-TGCAGACGTTT--GAAAAGT--CTTGAAAGTTATCTTAGTGGTGTAAA-TCTG-TTTTCTATTCAAATACGAACAGGATGATGCTC-TGTTG---------CCTATCTTTATTTACACAA---------------CGTACTTTCACAGAGTAA-G--TA--GATA-TATGAGT-A--T-TTTTGTGTTCAATACTTGTTTATTTAATAATGATGGGATCTTTG--CGACGGCTC-C-T--GG-GTTGTGAA----TTA----TAAAGATA-ATCA----------------A--CACGATT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAATTTATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTT---TA--C--A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACACTTTTCGGCAA---G-CTTGGT-GTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgt--TA--ATTA-TATAAGTTG--T-TTATGTGGCCAATACCTGTGACTTTAACAATGTTGTGATCCTCG--CGAT-GCTC-T-T--AGTG-TATGAGATTTTTATTTTTAAATAAATACTA-GT-AT--TCTTTACAAT-TACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCC----A---GTACGAGGTATTCCTATACATGCTGACT
gi|8 : TGGATCGTTACCTTAGTGAT-CGACCTCTG-TTT-CTATTCAGATAATGGC---ATGCTGTTC-CATTG---------C-----------------ATTTATG---------TGTATCTTCAC---ACAATA--CA--GTCGTTAT---C-A--T-TTAGGTGACCAAAACTT-CAAC--AAACAATCTTGTAATCCTCA--CGATGGCTCAT-A--AG-A-TTTGAG----TTA----TACCTTGG-AT----T-GT--T-------A---ACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TAGTGTTTTGT--AAATATTT--GTAAAAT--CTGAATCGTTATCTTAGTG-TTCTACCTCTG-TTT-GTATTAAAATATTGTC---ATGTTGTTC-TGTT--------------------------------------------TGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111 1111 1111 33333333333333333 1111 22222 22222 1111 11111111111111111111111111111111111111111111 111 11 111111 11111111111 1111 1111 555555555555555555555 1111 111 4444444444 1
lowQualScore : 000 1 6 6 2 4444 2222 88888888888888888 88888 2222 88 0 5 11 222 0 4 3 2 2 66 1 55555 1 33333 33 2 5 5 0 1 0 1111 33 5 11111111111111111111111111111111111111111111 1 1 444 11 55 99 5 2 000000 1 555 0 5 5 1 77 0 77777777777 2222 2222 1 5 888888888888888888888 2222 6 111 0 4444444444 1 3 6 99
lowQualScore : ... . . . . .... .... ................. ..... .... .. . . .. ... . . . . . .. . ..... . ..... .. . . . . . . .... .. . ............................................ . . ... .. .. .. . . ...... . ... . . . . .. . ........... .... .... . . ..................... .... . ... . .......... . . . ..
lowQualScore : 222 4 7 7 2 2222 1111 99999999999999999 99999 1111 00 7 7 33 000 3 4 4 9 5 99 0 55555 9 44444 77 7 7 7 1 0 3 4444 77 7 99999999999999999999999999999999999999999999 0 0 000 66 88 22 7 3 666666 0 000 7 3 7 7 99 7 11111111111 1111 1111 0 7 999999999999999999999 1111 7 777 7 0000000000 0 3 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCGTTT-CTATT-CAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCGTTT-CTATT-CAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGTTTGTTTTCTGCACTAGTAGTT----TTCA----ATCA----------CTATCTA--TTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAAT----AAAAATGTCTCGACTGTTATCT--GT------------GTTT-CAATT-CAAA-ATTGATG---TGTAGTTTGCATTATCTTAACTTC-----------------A---------------TGTAGCTTCAC---ATAATGAATA--ATTA-TTTAAAT-A--GATTTTGTG------ACCTTCGA-ATTTAAAAATGTTGTGAT--TCGACTGGTCACTC-C-TGGGG-A-TATGAG----TTA----TAAATAGA-ATCA-CTAGT--T-------TT-TATTTTTACAATGCTG---TTTTTTCACTGAAAATAG-AAA--A---GTACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|10 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacAGATAATGTCCA-TTATGCTCTGTGCACATGTTT--GAAA--TGCCTGGGCCTTTATCTTTGTGATCGAACTTCC-TTT-GCATT-CGAACAATACCG---TTTTGTTC-CGTTA---------A-----------------A---------------TGTgca
gi|11 : cATGTGATATAGTGTTGGCTCGGACAATA-CAATATATTTTCTCAACGAGTAATT----TTCA----GT-T----------CTCG-TA--T--A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTATctttacttccacacgctgtgtaccttcacataaatgtacacaagtaactatgtaaga
gi|12 : TA-TATAAGA-T--T-TTATGTGATAAATGCATGTGA-CTTTAACAATGTTGTGATCCTCG--CAATGGCTT-C-T--GGTA-CAAGAG----TTA----TAGACAGA-ATCA-CT-GCGAT-------ATGTATTTTT----a
gi|13 : taATGAGT-A--T-TTTTGTGACTACTGCCAGC-A-ATTTAACAATG-----ATCCTTG--CCATGGCTT-CTC--GT-A-TGTGAG----TTC----TAGATAGA-AATG-CT-G----------------CGGCT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTG--TGAATCGTTACCTTAG-GGATCCAACTCTGATT-CCATT-CAAATATTGACA---TGATATTC-TGTTT---------C-----------------ATACTTTTACACGTTGTGTACTGTCGC---GTAATAC-TATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : ----AT-A----------TC---TA--T--A----TATA------C-CGAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTT--GAAA
gi|2 : tcatatgaaatATGTG-TATAGTGTCAGCTAGGACAATA-AAA--------CTGCACAAGTACTT----TCCG----GT-A----------CT---TAAAT--A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCT--GTAA--TG-CTGGATCGTCACATTAGTA--TCTACCTTCGTTT-TTTTTTCAAATACTCACA---T----CTC-CATGG---------C-----------------A---------------TATAACATTGT---ATA-TG--TA--ATTA-CATAAGT-AAGT-TTCTATGACATATACCAGTAA-ATAAAACAATGTTGTGATCGTCA--TGATGGCTT-C-C--GG-A-TATGCG----GTA----TACATAGA-ATTACCC-GT--TACA----AT-TACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTA-ATATTTTCATTCATGTC--C--ATTTTTTGTATtg
gi|3 : t-TATACGGACAGATTAGAACATA-CACTTTATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----------CTA--TA--T--ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TCATGTTTT-TTTACAGGTTT--AGAAAGT--CTGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAATTAAGTTTTGGCATGAGTAATT----TCCA----AT-A----------CC---TA--T--A----CAT-AAGCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TTATGTTTT-TGCAGACGTTT--GAAAAGT--CTTGAAAGTTATCTTAGTGGTGTAAA-TCTGTTTTCTATT-CAAATACGAACAGGATGATGCTC-TGTTG---------CCTATCTTTATTTACACAA---------------CGTACTTTCACAGAGTAA-G--TA--GATA-TATGAGT-A--T-TTTTGTGTTCAATACTTGTTT-ATTTAATAATGATGGGATCTTTG--CGACGGCTC-C-T--GG-GTTGTGAA----TTA----TAAAGATA-ATCA----------------A--CACGATT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAATTTATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTT---TA--C--A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACACTTTTCGGCAA---G-CTTGGT-GTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgt--TA--ATTA-TATAAGTTG--T-TTATGTGGCCAATACCTGTGA-CTTTAACAATGTTGTGATCCTCG--CGAT-GCTC-T-T--AGTG-TATGAGATTTTTATTTTTAAATAAATACTA-GT-AT--TCTTTACAAT-TACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCC----A---GTACGAGGTATTCCTATACATGCTGACT
gi|8 : TGGATCGTTACCTTAGTGAT-CGACCTCTGTTT-CTATT-CAGATAATGGCA---TGCTGTTC-CATTG---------C-----------------ATTTATG---------TGTATCTTCAC---ACAATA--CA--GTCGTTAT---C-A--T-TTAGGTGACCAAAACTT-CAACA---AACAATCTTGTAATCCTCA--CGATGGCTCAT-A--AG-A-TTTGAG----TTA----TACCTTGG-AT----T-GT--T-------A---ACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TAGTGTTTTGT--AAATATTT--GTAAAAT--CTGAATCGTTATCTTAGTG-TTCTACCTCTGTTT-GTATT-AAAATATTGTCA---TGTTGTTC-TGTT--------------------------------------------TGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111 1111 1111 33333333333333333 1111 22222 22222 1111 11111111111111111111111111111111111111111111 111 11 111111 11111111111 1111 1111 555555555555555555555 1111 111 4444444444 1
lowQualScore : 000 1 6 6 2 4444 2222 88888888888888888 88888 2222 88 0 5 11 222 0 4 3 2 2 66 1 55555 1 33333 33 2 5 5 0 1 0 1111 33 5 11111111111111111111111111111111111111111111 1 1 444 11 55 99 5 2 000000 1 555 0 5 5 1 77 0 77777777777 2222 2222 1 5 888888888888888888888 2222 6 111 0 4444444444 1 3 6 99
lowQualScore : ... . . . . .... .... ................. ..... .... .. . . .. ... . . . . . .. . ..... . ..... .. . . . . . . .... .. . ............................................ . . ... .. .. .. . . ...... . ... . . . . .. . ........... .... .... . . ..................... .... . ... . .......... . . . ..
lowQualScore : 222 4 7 7 2 2222 1111 99999999999999999 99999 1111 00 7 7 33 000 3 4 4 9 5 99 0 55555 9 44444 77 7 7 7 1 0 3 4444 77 7 99999999999999999999999999999999999999999999 0 0 000 66 88 22 7 3 666666 0 000 7 3 7 7 99 7 11111111111 1111 1111 0 7 999999999999999999999 1111 7 777 7 0000000000 0 3 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCGTTT-CTATT-CAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCGTTT-CTATT-CAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGTTTGTTTTCTGCACTAGTAGTT----TTCA----ATCA----------CTATCTA--TTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TTATGCTTTGTGTGCACAAT----AAAAATGTCTCGACTGTTATCT--GT------------GTTT-CAATT-CAAA-ATTGATG---TGTAGTTTGCATTATCTTAACTTC-----------------A---------------TGTAGCTTCAC---ATAATGAATA--ATTA-TTTAAAT-A--GATTTTGTG------ACCTTCGA-ATTTAAAAATGTTGTGAT--TCGACTGGTCACTC-C-TGGGG-A-TATGAG----TTA----TAAATAGA-ATCA-CTAGT--T-------TT-TATTTTTACAATGCTG---TTTTTTCACTGAAAATAG-AAA--A---GTACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|10 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacAGATAATGTCCA-TTATGCTCTGTGCACATGTTT--GAAA--TGCCTGGGCCTTTATCTTTGTGATCGAACTTCC-TTT-GCATT-CGAACAATACCG---TTTTGTTC-CGTTA---------A-----------------A---------------TGTgca
gi|11 : cATGTGATATAGTGTTGGCTCGGACAATA-CAATATATTTTCTCAACGAGTAATT----TTCA----GT-T----------CTCG-TA--T--A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TTGAGTTTTATctttacttccacacgctgtgtaccttcacataaatgtacacaagtaactatgtaaga
gi|12 : TA-TATAAGA-T--T-TTATGTGATAAATGCATGTGA-CTTTAACAATGTTGTGATCCTCG--CAATGGCTT-C-T--GGTA-CAAGAG----TTA----TAGACAGA-ATCA-CT-GCGAT-------ATGTATTTTT----a
gi|13 : taATGAGT-A--T-TTTTGTGACTACTGCCAGC-A-ATTTAACAATG-----ATCCTTG--CCATGGCTT-CTC--GT-A-TGTGAG----TTC----TAGATAGA-AATG-CT-G----------------CGGCT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTG--TGAATCGTTACCTTAG-GGATCCAACTCTGATT-CCATT-CAAATATTGACA---TGATATTC-TGTTT---------C-----------------ATACTTTTACACGTTGTGTACTGTCGC---GTAATAC-TATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : ----AT-A----------TC---TA--T--A----TATA------C-CGAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTCGC----TGTGTACACGTTT--GAAA
gi|2 : tcatatgaaatATGTG-TATAGTGTCAGCTAGGACAATA-AAA--------CTGCACAAGTACTT----TCCG----GT-A----------CT---TAAAT--A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TTACATTTTGTGTACGCATCT--GTAA--TG-CTGGATCGTCACATTAGTA--TCTACCTTCGTTT-TTTTTTCAAATACTCACA---T----CTC-CATGG---------C-----------------A---------------TATAACATTGT---ATA-TG--TA--ATTA-CATAAGT-AAGT-TTCTATGACATATACCAGTAA-ATAAAACAATGTTGTGATCGTCA--TGATGGCTT-C-C--GG-A-TATGCG----GTA----TACATAGA-ATTACCC-GT--TACA----AT-TACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTA-ATATTTTCATTCATGTC--C--ATTTTTTGTATtg
gi|3 : t-TATACGGACAGATTAGAACATA-CACTTTATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----------CTA--TA--T--ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TCATGTTTT-TTTACAGGTTT--AGAAAGT--CTGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAATTAAGTTTTGGCATGAGTAATT----TCCA----AT-A----------CC---TA--T--A----CAT-AAGCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TTATGTTTT-TGCAGACGTTT--GAAAAGT--CTTGAAAGTTATCTTAGTGGTGTAAA-TCTGTTTTCTATT-CAAATACGAACAGGATGATGCTC-TGTTG---------CCTATCTTTATTTACACAA---------------CGTACTTTCACAGAGTAA-G--TA--GATA-TATGAGT-A--T-TTTTGTGTTCAATACTTGTTT-ATTTAATAATGATGGGATCTTTG--CGACGGCTC-C-T--GG-GTTGTGAA----TTA----TAAAGATA-ATCA----------------A--CACGATT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAATTTATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTT---TA--C--A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-ATGTGTTTTGTCTACACTTTTCGGCAA---G-CTTGGT-GTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgt--TA--ATTA-TATAAGTTG--T-TTATGTGGCCAATACCTGTGA-CTTTAACAATGTTGTGATCCTCG--CGAT-GCTC-T-T--AGTG-TATGAGATTTTTATTTTTAAATAAATACTA-GT-AT--TCTTTACAAT-TACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCC----A---GTACGAGGTATTCCTATACATGCTGACT
gi|8 : TGGATCGTTACCTTAGTGAT-CGACCTCTGTTT-CTATT-CAGATAATGGCA---TGCTGTTC-CATTG---------C-----------------ATTTATG---------TGTATCTTCAC---ACAATA--CA--GTCGTTAT---C-A--T-TTAGGTGACCAAAACTT-CAACA---AACAATCTTGTAATCCTCA--CGATGGCTCAT-A--AG-A-TTTGAG----TTA----TACCTTGG-AT----T-GT--T-------A---ACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TAGTGTTTTGT--AAATATTT--GTAAAAT--CTGAATCGTTATCTTAGTG-TTCTACCTCTGTTT-GTATT-AAAATATTGTCA---TGTTGTTC-TGTT--------------------------------------------TGTA
blockSeqs : TGA T C A T ACAA TCTT AAAAACATGTGTT AAT CATG AC T TA CCA G T G G CG A AGTG C ATCGA CT C T T A AGGA TT . GCCTATCTTTATTTACACAA C G AGA AT C TT T A AAGT A ATA G C T . CTGGTA ATTT TTTT G T TAGTATTCTTTACAAT . . ATC CCAATTAGAT T G G .
blockSeqs : TG T C . T . . TCTCG T . TA . TG CCT . A A G . A TGC C GATCC AC T . . T G GA . TCATACTTTTACACGTTG A A . AT . . . G TGT T ACT A . T . CTCGTA . . G . TACCCGTTACAAT . . . CCA G . .
blockSeqs : CA A A . C . . ACTA T . GT . TT CCT . C G G . T AGT C GTGTA CC C . . C A GA . GCATTTATG C T . T . . . A TT C ACA T . A . CTGGGT . . C . CACTGCGATATG . . .
blockSeqs : T G . G . . ATC T . GT . TA GTA . C G T . G AGT T ATCG CC T . . C A GC . AAA T T . A . . . G AT T TTC G . T . TTAGTG . . A . TGCTG . . .
blockSeqs : C . C . . ACT T . GT . CG CT . T G G . A AAT A TTCT CC T . . A A GT . GCA . . . A AT A GCC A . T . ATAAGA . . A . TGTTA . . .
blockSeqs : . ACC C . C . GT C . T G C . C TG C TCT A T . . T A . . . . . AT A ACC . . . . CCGGA . . C . CAA .
blockSeqs : . T . . . T G C
blockSeqs : . T . .
blockSeqCons : ACT************** T**** AGT** ATCN* CC GCATTTA************************************* ** AT**** ACC ** CTGGTA***** TACTTGCGAT*********** ****
originalCons : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGTG-CTGGATCGTTACCTTAGTGGTTCNACCTCCGTTT-CTATT-CAAATANTGACG---TGNTGTTC-CGTTG---------C-----------------A---------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTC-C-C--GG-A-TATGAG----TTA----TANATAGA-ATCA-CT-GT--T-------AT-TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
finalCons : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----ATACT--------------TAT----A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TTGCGTTTTGTGTACACGTTT--GNAAAGT--CTGGATCGTTACCTTAGTGATCN-ACCTCCGTTT-CTATT-CAAATANTGACG---TGNTGTTC-CGTTGCATTTA-------------------------------------TGTANCTTCGC---GTAATG--TA--ATTA-TATAAGTAT----TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTCCTGGTA-----TATGAG----TTA----TANATAGA-ATTACTTGCGAT-----------TACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|17 ): TATTAGTATGTTGTGTGCACATGTAATGTTACCTTTGTGACCTGCCTCTTTTTCGTAAATTCAATAGTAACAAGGCGTTGC
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 1111 33333333333333333 1111 111111 1111 1111 22222222222222222222222222222222222222222222222222222 111111 111111 111111 1111 1111 4444444444444444444444444444444 1111 111 4444444444 1
lowQualScore : 000 1 6 6 2 4444 2222 88888888888888888 88888 2222 88 0 5 11 222 0 4 555 1 1 4 1 5 2 55 0 2 2 2 3 5 333333 1 0000 2 0 2222 55555555555555555555555555555555555555555555555555555 1 0 222222 666666 5 0 000000 1 333 0 5 5 1 77 0 5 8 2222 2222 1 6666666666666666666666666666666 1 2222 6 111 0 4444444444 1 3 6 99
lowQualScore : ... . . . . .... .... ................. ..... .... .. . . .. ... . . ... . . . . . . .. . . . . . . ...... . .... . . .... ..................................................... . . ...... ...... . . ...... . ... . . . . .. . . . .... .... . ............................... . .... . ... . .......... . . . ..
lowQualScore : 222 4 7 7 2 2222 1111 99999999999999999 99999 1111 00 7 7 33 000 3 0 777 6 1 4 0 1 4 11 5 5 8 5 1 0 111111 0 8888 8 4 1111 22222222222222222222222222222222222222222222222222222 0 7 555555 000000 0 9 222222 0 444 7 3 7 7 99 7 7 3 1111 1111 0 4444444444444444444444444444444 7 1111 7 777 7 0000000000 0 3 7 88
consensus : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TT-GTGTTTTGTGTACACGTTT-GNAAAGTCTGGACCGTTACCTTAGTGATCTACCTCCG-TTT-C-T--ATTCAAATANTGACA---TGNTGTTCCGT----TGC--------A----------T-----------TTA-------------T-----GTACCTTCGC---GT-AATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTCCT-GGNATATGAG----TTA----TANATAGA-------ATC-AC---TTGCGAT---T----ACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
Reference ( family-7852 ) : NATGCG-TATACTGTCAGCTTGGACAATA-CAATTTATTTTCCGCACGAGTAATT----TTCA----AT-A----------CT---TA--T--A----TATAAAGCAACGCGAACTATCAAG-TGTNTACCTACATGGACCTGTTCTAGATATCATCTA-TT-GCGTTTTGTGTACACGTTT-GNAAAGTCTGGATCGTTACCTTAGTGATCNACCTCCG-TTT-C-T--ATTCAAATANTGACG---TGNTGTTCCGT----TGC--------A----------T-----------TTA-------------T-----GTANCTTCGC---GT-AATG--TA--ATTA-TATAAGT-A--T-TTNTGTGACCAATACCTGCGA-ATTTAACAATGTTGTGATCCTCG--CGATGGCTCCT-GGTATATGAG----TTA----TANATAGA-------ATT-AC---TTGCGAT---T----ACTTTT----T-TTA---TTTTTCCGCCGAAAATAGCCAA--A---GTACNA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|1 : ATGTT-TATACTGACAGCTTGGA-AATG-CAGTTTGTTTTCTGCACTAGTAGTT----TTCA----ATCA----------CTATCTA--TTCA----TATAAAGTAGTATAAACCAAGAAG-AAAACACCTACATGAACCTGTTCTAGATATCATCTT-TT-ATGCTTTGTGTGCACAATA-AAAATGTCTCGACTGTTATCT--GT-----------G-TTT-C-A--ATTCAAA-ATTGATG---TGTAGT----T----TGC--------ATTATCTTAACT-----------TCA-------------T-----GTAGCTTCAC---AT-AATGAATA--ATTA-TTTAAAT-A--GATTTTGTG------ACCTTCGA-ATTTAAAAATGTTGTGAT--TCGACTGGTCACTCCTGGGGATATGAG----TTA----TAAATAGA-------ATC-AC---TAGTTTT---T----ATTTTTACAATGCTG---TTTTTTCACTGAAAATAG-AAA--A---GTACCA-GTATTCCCATTCATGCCGACTGACTCTTTGTAT
gi|10 : caagtatccacacctaagtgcattttacataatttctcttgcaatatatatacacactagtatttacactggttgctttgatattaaaaccatacAGATAATGTCCA-TT-ATGCTCTGTGCACATGTTT-GAAATGCCTGGGCCTTTATCTTTGTGATCGAACTTCC-TTT-G-C--ATTCGAACAATACCG---TTTTGTTCCGTTAAATGT--------C----------T-----------TTACTTCCACACGCTGT-----GTACCTTCAC---ATAAATG--------TA-CACAAGT-A--A-CTATGTAAgca
gi|11 : cATGTGATATAGTGTTGGCTCGGACAATA-CAATATATTTTCTCAACGAGTAATT----TTCA----GT-T----------CTCG-TA--T--A----TATAATGCAACACGAACTTTAAAG-TCTATACCAATAAGGACCTGTTCTTTATATCATCAA-TT-GAGTTTTATga
gi|12 : TA-TATAAGA-T--T-TTATGTGATAAATGCATGTGA-CTTTAACAATGTTGTGATCCTCG--CAATGGCTTCT-GGTACAAGAG----TTA----TAGACAGA-------ATC-AC----TGCGATATGT----ATTTTT----a
gi|13 : taATGAGT-A--T-TTTTGTGACTACTGCCAGC-A-ATTTAACAATG-----ATCCTTG--CCATGGCTTCT-CGTATGTGAG----TTC----TAGATAGA-------AAT-GC----TGCGG-------------CT----T-TTA---TTTTTaagtaaatatacgttactataac
gi|14 : AAAGTGTGAATCGTTACCTTAGGGATCCAACTCTG-ATT-C-C--ATTCAAATATTGACA---TGATATTCTGT----TTC--------A----------TACTTTTACACGTTG-------------T-----GTACTGTCGC---GT-AATAC-TATTATTA-TATaagtaaatgcttgatactactgttcctttac
gi|15 : ----AT-A----------TC---TA--T--A----TATA------C-CGAACTATGAAG-TGTGTACCTACATGGACCTGTTCTAGATAGTATCTAGTC-GC----TGTGTACACGTTT-GAAA
gi|17 : tcatatgaaatTA-TTAGTATGTTGTGTGCACAT---GTAA---------TGTTACCTTTGTGACCTGCCTCTT-TTT-CGTAAATTC-AATAGTAACA---AGGCGTTtg
gi|2 : ATGTG-TATAGTGTCAGCTAGGACAATA-AAA--------CTGCACAAGTACTT----TCCG----GT-A----------CT---TAAAT--A----TATAAAGCAACTAGAACTATCA---CATTTACCTACATGGACCTAATCTAAATATCATCTA-TT-ACATTTTGTGTACGCATCT-GTAATG-CTGGATCGTCACATTAGT-ATCTACCTTCGTTTT-T-T--TTTCAAATACTCACA---T----CTCCAT----GGC---------------------------------A-------------T-----ATAACATTGT---AT--ATG--TA--ATTA-CATAAGT-AAGT-TTCTATGACATATACCAGTAA-ATAAAACAATGTTGTGATCGTCA--TGATGGCTTCC-GG-ATATGCG----GTA----TACATAGA-------ATT-ACCCGTTACAAT---T----ACTTTC----T-TTA---TTTTCCCGCCAGAAATAGCCAATTAGATGCATTA-ATATTTTCATTCATGTC--C--ATTTTTTGTATgc
gi|3 : t-TATACGGACAGATTAGAACATA-CACTTTATTTTCCGCACAGGTAATTACAATTAATCTTAT-A----------CTA--TA--T--ACATGTATAAAGCAATGTGAACTTCCAAG-TGTATAC------AAACCTGTTCTTAATATAATATA-TC-ATGTTTT-TTTACAGGTTT-AGAAAGTCTGACCTGTTAa
gi|4 : tgtccattctttagactttttccccctccttatcgtggtctatagatctcagaaaaaaaatcttttaactcaaaaccgacgtttgatttcagtaaaggttcacttttaatattattcaagtgtctacacataaacgaaacacgtacataacatctaattttatcgtctatcttgcaatatgtgccagtactcaaaccgataagttcaatggtgaataacaaaatatgaaggctcTGCA-CATACTGTCAGCTTGGAGAACA-CAATTAAGTTTTGGCATGAGTAATT----TCCA----AT-A----------CC---TA--T--A----CAT-AAGCAATGTGAACAATCAAG-TGCGTGGTAACATGGAGCCGTTCTAAATt
gi|5 : actgatgtacgttcttaatcgagggaagtgttcacttgtcgagtatttatatgtcaagaaataaaaacgcaatacataacatcatctgattttgccatttctcgttcaatatgtaacggtagttacactgattaattctgttaaattaatagtccaacagtgaaattaatTCATCTA-TT-ATGTTTT-TGCAGACGTTT-GAAAAGTCTTGAAAGTTATCTTAGTGGTGTAAATCTG-TTTTC-T--ATTCAAATACGAACAGGATGATGCTCTGT----TGCCTATCTTTA----------T-----------TTA-------------CACAACGTACTTTCACAGAGT-AA-G--TA--GATA-TATGAGT-A--T-TTTTGTGTTCAATACTTGTTT-ATTTAATAATGATGGGATCTTTG--CGACGGCTCCT-GGGTTGTGAA----TTA----TAAAGATA-------ATCAAC-----ACGA-------------TT----T-TCA---TTTTTC
gi|6 : GCTTGAACAAAAACAATTTATTTTCCGCATGAGTAATT----CTCA----AT-AAAAACATGTGTT---TA--C--A----TATAAATCACTGTGAACTATCAAGTTGGTTG-CTACACTGACCTGTTCTGGATACCATTTA-AT-GTGTTTTGTCTACACTTTTCGGCAAGCTTGG--TGTTAagtaaatactcg
gi|7 : acaaatgtgtttgaacaaagcaatgacatatacttttatcttgcaatatgtaacagttacggtatttaaactggttagttctattctgaatacaaatgt--TA--ATTA-TATAAGTTG--T-TTATGTGGCCAATACCTGTGA-CTTTAACAATGTTGTGATCCTCG--CGAT-GCTCTT-AGTGTATGAGATTTTTATTTTTAAATAAATACTAGTATT-CT---TTACAAT---T----ACTTTT----T-TCAATCTTTTTCCACCGAAAAAAGCC----A---GTACGAGGTATTCCTATACATGCTGACT
gi|8 : TGGATCGTTACCTTAGTGATCGACCTCTG-TTT-C-T--ATTCAGATAATGGCA---TGCTGTTCCAT----TGC--------A----------T-----------TTATG-----------T-----GTATCTTCAC---AC-AATA--CA--GTCGTTAT---C-A--T-TTAGGTGACCAAAACTT-CAACA---AACAATCTTGTAATCCTCA--CGATGGCTCAT-AAGATTTGAG----TTA----TAC-----------------C---TTG-GAT---TGTTAACTTTA----T-TTA---tttatacgacaaaatgccacttta
gi|9 : ATATCATCTT-TA-GTGTTTTGT--AAATATTT-GTAAAATCTGAATCGTTATCTTAGTGTTCTACCTCTG-TTT-G-T--ATTAAAATATTGTCA---TGTTGTTCTGT----T
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTCGCTTAAAAAATAAGATGGTTTTGACTAGGTAATTTTTAATAATTACACATATATACACCAATATGGACAATAAAGTGTGT
Unaligned ( gi|18 ): AATGCTCTTTGACATATATTAGTTTTCCAACCGTAAGAAGTATCAATTTTCCCAGTGATCTCGACTTTTTTGCGATGTTAT
Unaligned ( gi|19 ): AACATTCCCATTCATGCAGACTTATTATGCGATGAAATGCCACTTCAAAC
Unaligned ( gi|20 ): GTCCTTTTTATTTTAATGTCAAATATAGTCTATAAGAAATATCAGTT