lowQualScore : 1 1 2 1 1111 11 1 555555555555555 11111 33333333333333333 5555555555555555555555555555 1111111 11111 111 11111111 11 111111 11 4444444444444444444444444444 1111111 22 11 33333333333333333333333333 111111111111111 3333333333333333333333 1 3333333333333333333333333333 11111111 2222222 444444444444444444444444 3333333333333333333333333 111
lowQualScore : 6 7 2 3 0 1111 00 1 6 4 8 888888888888888 7777 3 22222 66 2 4 00000000000000000 88888 3 7 3 44 3 1111111111111111111111111111 3 4444444 2 66666 999 0 77777777 33 33 4 444 222222 33 555 6 88 33 7 1 2 444 2 2 1 6666666666666666666666666666 2 4 6666666 2 0 999 3 2 2 77 55 77 5 9999 0 66666666666666666666666666 3 2 999999999999999 2 0 9999999999999999999999 22 9 2 7777 6666666666666666666666666666 2 66 2 99999999 3 99999999 3 2222222 44 2 555555555555555555555555 0000000000000000000000000 3 333
lowQualScore : . . . . . .... .. . . . . ............... .... . ..... .. . . ................. ..... . . . .. . ............................ . ....... . ..... ... . ........ .. .. . ... ...... .. ... . .. .. . . . ... . . . ............................ . . ....... . . ... . . . .. .. .. . .... . .......................... . . ............... . . ...................... .. . . .... ............................ . .. . ........ . ........ . ....... .. . ........................ ......................... . ...
lowQualScore : 0 0 0 3 0 3333 33 2 6 0 9 777777777777777 7777 6 00000 11 0 7 11111111111111111 99999 1 2 0 11 0 2222222222222222222222222222 5 1111111 5 11111 444 3 55555555 44 66 9 777 222222 22 111 1 44 77 0 0 5 111 5 2 4 3333333333333333333333333333 4 4 7777777 4 4 222 1 9 1 99 77 77 2 8888 6 77777777777777777777777777 7 7 666666666666666 5 4 5555555555555555555555 66 4 4 4444 5555555555555555555555555555 4 33 7 77777777 1 55555555 2 8888888 88 0 555555555555555555555555 4444444444444444444444444 6 666
consensus : NNNNNNNNTGGCCTCTAGTGTGTTAA-CAAGC-TTTTCCTNTGATTTGACCTAGTGA-CCTAGTTTTTGACCCC---AC----GTG----AC-CCAG----NTT--CGAACTT-NA--CC-AAAG-----AT--C--A-TNAAGACAAACATTCTGACC-AAGTTTCATGAA-----GA--T--A-C-AN---G-TCA-AAAATGTGACCTCTAGAG-----TGT-TAACA-A-GCTTTTCCTATGATTTGACCTGGT----G-ACCTAGTT--TTTGACCCCANATGAC---CCAGNTTCGAACTTGATCNAGANTTC--ATNAAGACA---AACATTCTGACC-AAGTTTCATGAA-----GA--T--A-CA-N---G-TCA-AA-AATGTGACCTCTAGAG-----TGT-TAACAAGCT-TT-TTCTATGATTTGACCTAGTGACC-TAGTTTTTGACCCCACGTGACCCAGTT--TCGAACTTGACC----CCGAGA--T--C--ATNA-AGA-----CA----AACATTCTGACC-AAGTTTCATGAAGAT-----CA-G-TN----G--A--AAATGTGA-CCTCTAG-A----GTGTTAA-CAAGCT-TTN--TCTNTC----A----TTTGA-CCTGGTGACC-TAGTTTT--------TGA-CCCCA----CGTGACCCA-GAT---TC-GAACTTG-AC-CGAGA----NAT-T--ATNAAGACAAACATTCTGACCAAGTTTCAT-G--AAGATNCGGTCA----N---A-AATGTGAC-CNCTAGAGTGTTAACA
Reference ( gi|3 ) : TGTTACATTAGCCTCAAGGGTCTTAA-TAAGC-TTTTCCTTTGACTTGACCTACTGA-CTTAGTTTTTG----C---AC----ATG----AC-CCAG----ATT--CAAACTT-TA--CT-AAAA-----AT--C--A-TCAAGATAAACATTCTGACC-AAGTTTCATGAA-----GA--T--A-C-AT---G-TCA-TAAATGTGGCCTCTAGAA-----TGT-TAACA-A-GCTTTTCCTATGGTTTGACCTGGT----G-TCCTAGTT--TTTGACCGCACATGAC---CCAGATTCTAACTTAACCTAGAAGTC--ATCAAAATA---AACATTCTGACC-AAATTTCATGAA-----GA--T--A-CA-T---G-TCA-TA-AATGTGGCCTCTAGAA-----TGT-TAACAAGCT-TT-TCCTTTGATTTGACCAGGTGACA-TAGTTTTTGACCCCACATGACCCAGAT--TCAAACTTGACT----TTGAGA--T--C--ATTA-ATA-----TA----ATCATTCTGACC-AAGTTTCATGAAGAT----ACA-A-TA----A--A--AAATGTGA-CCTCAAG-A----GTGTTAA-AAAGCT-TTA--CCTTTC----A----TTTGA-CCTGGTGACC-TAGTTTT--------TGA-CCACA----CATGACCTA-TAT---TC-AAACTTG-AT-TAAGG----GAT-T--GTTGAGACAAACATTCTGACCAAGTTTCAC-A--AACATACAGTCA----T---A-AATGTGAC-CCCTAGAGTGTTAACA
gi|8 : TGGCCTCTAATGTGTTCA-CATTC-TTTTTCTAACATTTGACCTTGTGA-CATAGTTTTTGA---CCCAAC----ATG----AC-CCA
gi|15 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaaatctagatttcatagagatgaacattcacactaagtttcatgaagaatgggccaaaagtgCCTCTAGAGTGTTAA-CAAGC-TTTTCCTTTAACTTGACCTGGTGA-CCTAGTTTTTGACCAC---AC----ATG----AC-CCAG----ATT--CAAACTT-GA--CCGAGAA-----AT--T--G-TTAAAACAACTATTCTG
gi|2 : aaatgtgaCCTCTAGTGT--TAACTATGT-TTTTC-TAGGATTTGACCTAGTGA-CCTAGTTTTTGACCCC---AG----GTG----AT-CCAG----TAT--CGAACTTGTC--CG-AGAT-----TT--T--A-TTAAGACAGACATTCTAACC-AAG--TCAT---------A--TTAA-C-ATTGGG-CCA-ATATTGTGACCGCTAGAG-----TGT-CAACA-
gi|18 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgaAA-TAA---TTTTCCAA-GATTTGACCTAGTGACCCTAGTTTTTGAGCCC---AG----GTG----AC-CCAgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|7 : gacattgaaAGCATTTTTCTATGATTTGACCTAGTGA-CCTAGTTTT
gi|14 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccatgtgatctgctacaagttttaactcgtctgacaacatatccataatctataatctagatttcatatagacaaacattctggccaaatttcatgaatttcaggtagacaattaatcctctgg-TTTTCCTTTGACTTGACC---------TAGTTTTTG----T---TCTGGGGTG----AC-CTAG----TTT--TGAA-TT-CA--TTCAAGA-----ATA-C--A-TAGAGGCGAACATCGTGGCA-ATGTTTCATGAA-----GA--TC-C-C-AT-----TTA--AAATGTAGCCACTAGTG-----TGT-TCACA-A-GCaaac
gi|6 : TTTCTATGATTTGACCTAGTGA-CCTAGTTTT----------------A-A----ACTCCAG----ATTACCGAGTTT-TGGTCT-ACAT-----TT--C--A-TAAAAACAAACATTCTGACC-AGGTTTCATCAA-----TT--T----C-AG---G-TAA-AAAAAGGAGCCTCTAGAG-----TGT-CAACA-A-GGTTTTG-TATGATTTGACCTTAT----G-GTCTTTTT--TTTTACCCCATAAGAC---TCAGTTTCAAACTTGATCTAGATTTC--ATAAAGACA---AACATTCTGGCC-AAGTTTCGTGAA-----T---T--T-CA-G---G-T-A-GACAAT----CTTCTAGAG-----CGT-T----AGAT-TT-TTCTATGATTTGACCTAGTGACT-TAGTTTT
gi|13 : gccccaaggaaggggcagataCTTAAATTTGACCTGTTGA-CCTAGGTTTTGACCCC---AC----ATG----AC-CCAG----ATT--CGAACTT-TA--CC-GAGGG----AT--T--A-TCAAGACAAACATTCTGAAA-AAGTTTCATGAA-----GA--T--A-C--C---G-TCA-TAAATGTGACCTCTAGAG-----TGT-TAACA-A-aaa
gi|12 : TTTGACTTGACCTA---------GTTTTTG----A---TC----TTGGGTAAC-CAAG----TTT--CAAA-TG-CA--TC-CAAA-----AT--TTTA-TAGTGGTTAACACTGTGACC-AAGTTTCAAGAA-----GA--T--C-CAAT---G---A-AAAATGAAGCAT-----G-----TGT-TCACA-A----TGTCTCA----TTGAATTGA--------ACTAGTT--TTTGATCaaaattgttt
gi|1 : aGATTTGACCTAGTGA-CCTAGTTTTTGACCCT---AT----GTG----CT-CCAG----TAT--CGAACTC-GT--CC-GAGG-----TT--T--AATTAAAGCAGTCATTCTGACC-AAGTTATAT------------T--ATC-ATTGGG-CCA-AAATTGTGACCGCTAGAG-----TGT-CAACA-
gi|8 : tttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaacattgtttttcaagAGGTTTCA----A---AC----TTG----AC-TAAGTTTCATT--TAAATTG-GA--CC-AAAATCTAGATTTC--A-TAGAGATGAACATTCACACT-AAGTTTCATGAA-----GA-----A-T-GG---G-CCA-AAAGTGTGGCCTCTAATG-----TGT-TCACA-T-TCTTTTTCTAACATTTGACCTTGT----G-ACATAGTT--TTTGACCCAACATGAC---CCAgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|4 : tataatcttta---AC----ATG----AC-CCAA----ATT--CCAACTT-GAT-CT-AGAG-----AT--C--C-TAAATATAAACATTCTGACC-AAGTTTCATTAT---------T--A-T-AA---G-TCA-TAAAAGTGA--TCTAAAG-----GGTGTAACA-A-GCTTT-CCTACAATTTGACCTGAT----G-ATCTAGAT--TTTGATCTCACATAAC---CCA-AT-----------------GTC--ATTACATTT---A-CATTCTGGCC-AAGTTTTATGGA-----GA--T--A--A-T---G-TCA-TA-AATGTAACCTCTAG-------TGT-TAACAAACT-TT-TCCCTTGATTTGACCCAATTACC-TAATTTGTGAGCCAATATGACCCAGAT--TCTAACATGGCC----TAGAGA--T--C--ATCA-ATA-----CA----AACATTCTGACC-AAGTTTCATGAAGAT----ACA-G-TT----G--T--AAATGTGA-CCTCTA--A----GTGTTAA-CAAGCT-TTT--CCTATT----A----TTTAAGCCAGATTACC-TAAT
gi|5 : ca-----AC--C--A-TAAAGACAAA-ATTCTGACTTGGGTGTCATGTA-----GA--T----C-AG---G-TAG-AAAATGTGG-CTCTGGAG-----TGC-TAACatcgaacttgtccaacatttaatt
gi|7 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactagtctgaataaaccagatgaccaatggcgatT--C--A-TATAGACAAACATTCTGGCC-AAATTTCATGAATTTCAGG--T--A-G-AC---A---A-TTAAT----CCTCTGGAG------------CA-----TTTTTCTATGATTTGACCTAGT----G-ACCTAGTT--TT
gi|16 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccatgtgatctgctacaagttttaactcgtctgacaacatatccataatctataatctagattT--C--A-TCAACACAAACATTCTGATC-AAGTATCATGTA-----AA--T----C-A----G-TTA-AAAATGTGAC----AAAATACAGTGT-TAAAA-A-GTTTTTTCTAGGATTTGATCaaac
gi|9 : tctagatcT--T--A-TCAAGACAAACATTTTGACA-AAATTTCATGAA-----GATTT--A---AT---GATTATTAGAGGTG---TC-AGAG-----TGT-TGACA-CTGTTATTCTTCT-CTTTGACC--GT----A-T-----TT--TTT-ATCCTAAATGAC---ACA-ATTTTAA-TTAACCaaaatttggtg
gi|2 : cccatttttgaccaatgataaacaagtctatcctggtcacgattAAAACAAATATTCTGACA-AAATTTCATAAA-----GA--T----C-AG---A-TAG-AAAATGTGACCTCTAG-------TGT-TAACT-A-TGTTTTTCTAGGATTTGACCTAGT----G-ACCTAGTT--TTTGACCCCAGGTGAT---CCAGTATCGAACTTGTCCGAGATTTT--ATTAAGACA---GACATTCTAACC-AAG--TCAT---------A--TTAA-CA-TTGGG-CCA-AT-ATTGTGACCGCTAGAG-----TGT-CAACActgatattat
gi|1 : atcttgtaAAAACAAATATTCTGACA-AAATTTCATAAA-----GA--T----C-AG---A-TAG-AAAATGTGACCTCTAG-------TGT-TAACA-T-TGTTTTTCAAGGATTTGACCTAGT----G-ACCTAGTT--TTTGACCCTATGTGCT---CCAGTATCGAACTCGTCC--GAGGTTTAATTAAAGCA---GTCATTCTGACC-AAGTTATAT------------T--ATCA-TTGGG-CCA-AA-ATTGTGACCGCTAGAG-----TGT-CAACAgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|15 : tttgtaAAATGTGACCTCTAGAG-----TGT-TAACA-A-GCTTTTCCTTTAACTTGACCTGGT----G-ACCTAGTT--TTTGACCACACATGAC---CCAGATTCAAACTTGACCGAGAAATT--GTTAAAACA---ACTATTCTGgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|7 : A-----TGG-CAACAGA-G--TGTCCCATG---TGATCTGCTACAAG-TTTTAACTCGTCTGACAACATAT------CCATAATCTA---TAATCTAGATTTC--ATATAGACA---AACATTCTGGCC-AAATTTCATGAATTTCAGG--T--A-GA-C---A---A-TT-AAT----CCTCTGGAG------------CA---T-TT-TTCTATGATTTGACCTAGTGACC-TAGTTTT
gi|14 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcTTTTCCT-----TTGACTTGA--------CCTAGTT--TTTGTTCTGGGGTGAC---CTAGTTTTGAATTCATTCAAGAATAC--ATAGAGGCG---AACATCGTGGCA-ATGTTTCATGAA-----GA--TC-C-CA-T-----TTA--A-AATGTAGCCACTAGTG-----TGT-TCACAAGCaaac
gi|18 : TTTTCCAA-GATTTGACCTAGT----GACCCTAGTT--TTTGAGCCCAGGTGAC---CCA
gi|6 : gacattgaaaataaTTTCTATGATTTGACCTAGT----G-ACCTAGTT--TTAAACTCCAGATTAC---CGAG-TT-----TTGGTCTACATTTC--ATAAAAACA---AACATTCTGACC-AGGTTTCATCAA-----TT--T----CA-G---G-TAA-AA-AAAGGAGCCTCTAGAG-----TGT-CAACAAGGT-TT-TG-TATGATTTGACCTTATGGTC-TTTTTTTTTACCCCATAAGACTCAGTT--TCAAACTTGATC----TAGATT--T--C--ATAA-AGA-----CA----AACATTCTGGCC-AAGTTTCGTGAAT-T----TCAGG-TA----G--A--CAAT-----CTTCTAG-A----GCGTTAG-A----T-TTT--TCTATG----A----TTTGA-CCTAGTGACT-TAGTTTT--------
gi|13 : gccccaaggaaggggcagataTTTGACCTGTT----G-ACCTAGGT--TTTGACCCCACATGAC---CCAGATTCGAACTTTACCGAGGGATT--ATCAAGACA---AACATTCTGAAA-AAGTTTCATGAA-----GA--T--A-C--C---G-TCA-TA-AATGTGACCTCTAGAG-----TGT-TAACAAaaa
gi|12 : cttaaaTTTGACTTGA--------CCTAGTT--TTTGATCTTGGGTAAC---CAAGTTTC-AAATGCATCCAAAATT----TTATAGTGGTTAACACTGTGACC-AAGTTTCAAGAA-----GA--T--C-CAAT---G---A-AA-AATGAAGCAT-----G-----TGT-TCACAA--T-GT-CTCATTGAATTGA-------AC--TAGTTTTTGATCaaaattgttt
gi|9 : aTT--TTTGACCA---ATGATAAACAAG--TCTATCCTGGTCACGATTTT--ATCAAGACA---AACATTTTGACA-AAATTTCATGAA-----GATTT--A--A-T---GATTATTA-GAGGTG---TC-AGAG-----TGT-TGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TTAA--TTAACC----CTGATA--T--T--AT
gi|4 : cccaACATGAC---CCAAATTCCAACTTGATCTAGAGATC--CTAAATATA---AACATTCTGACC-AAGTTTCATTAT---------T--A-TA-A---G-TCA-TA-AAAGTGA--TCTAAAG-----GGTGTAACAAGCT-TT--CCTACAATTTGACCTGATGATC-TAGATTTTGATCTCACATAACCCAA---------------------TG-----T--C--ATTACATT-----TA------CATTCTGGCC-AAGTTTTATGGAGAT----AAT-G-TC----A--T--AAATGTAA-CCTC--T-A----GTGTTAA-CAAACT-TTT--CCCTTG----A----TTTGA-CCCAATTACC-TAATTTG--------TGAGCCA-A----TATGACCCA-GAT---TC-TAACATG-GC-CTAGA----GAT-C--ATCAATACAAACATTCTGACCAAGTTTCAT-G--AAGATACAGTTG----T---A-AATGTGAC-CTCTA-AGTGTTAACA
gi|8 : caAATCTAGATTTC--ATAGAGATG---AACATTCACACT-AAGTTTCATGAA-----GA-----A-TG-G---G-CCA-AA-AGTGTGGCCTCTAATG-----TGT-TCACATTCT-TT-TTCTAACATTTGACCTTGTGACA-TAGTTTTTGACCCAACATGACCCAagcttttcctattatttaagccagattacctaatatcgaacttgtccaacatttaatt
gi|16 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaCTAGATCTC--ATCAACACA---AACATTCTGATC-AAGTATCATGTA-----AA--T----CA-----G-TTA-AA-AATGTGAC----AAAATACAGTGT-TAAAAAGTT-TT-TTCTAGGATTTGATCA
gi|5 : tC--ATAAAGACA---AA-ATTCTGACTTGGGTGTCATGTA-----GA--T----CA-G---G-TAG-AA-AATGTGG-CTCTGGAG-----TGC-TAACaaatttggtg
gi|2 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactagtctgaataaaccagatgaccaatggcgatacAAAACA---AATATTCTGACA-AAATTTCATAAA-----GA--T----CA-G---A-TAG-AA-AATGTGACCTCTAG-------TGT-TAACTATGT-TT-TTCTAGGATTTGACCTAGTGACC-TAGTTTTTGACCCCAGGTGATCCAGTA--TCGAACTTG--T----CCGAGATTT--T--ATTA-AGA-----CA----GACATTCTAACC-AAGTCATATTAACATTGGGCCA-A-T------------ATTGTGA-CCGCTAG-A----GTGTCAA-
gi|1 : atcttgtaAAAACA---AATATTCTGACA-AAATTTCATAAA-----GA--T----CA-G---A-TAG-AA-AATGTGACCTCTAG-------TGT-TAACATTGT-TT-TTCAAGGATTTGACCTAGTGACC-TAGTTTTTGACCCTATGTGCTCCAGTA--TCGAACTCG--T----CCGAGG--T--TTAATTA-AAG-----CA----GTCATTCTGACC-AAGTTATATTATCAT----TGG-G-CC----A--A--AATTGTGA-CCGCTAG-A----GTGTCAA-cagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|15 : tttgtaA-AATGTGACCTCTAGAG-----TGT-TAACAAGCT-TT-TCCTTTAACTTGACCTGGTGACC-TAGTTTTTGACCACACATGACCCAGAT--TCAAACTTGACC----GAGAAA--T--T--GTTA-AAA-----CA----ACTATTCTGcagtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|14 : T-TT-TCCTTTGACTTGACC---------TAGTTTTTGTTCTGGGGTGACCTAGTT--TTGAA-TTCA-T----TCAAGAA-TA-C--ATAG-AGG-----CG----AACATCGTGGCA-ATGTTTCATGAAGAT----CCC-A-TT----T--A--AAATGTAG-CCACTAG-T----GTGTTCA-CAAGC
gi|6 : T-TTCTATGATTTGACCTAGTGACC-TAGTTTTAAACTCCAGATTACCGAGTT--TTGGTCT--ACA----TT------T--C--ATAA-AAA-----CA----AACATTCTGACC-AGGTTTCATCAATTT-----CA-GGTA----A--A--AAAAGGAG-CCTCTAG-A----GTGTCAACAAGGTT-TTG----TATG----A----TTTGA-CCTTATGGTC-TTTTTTT--------TTA-CCCCA----TAAGACTCA-GTT---TC-AAACTTG-ATCTA-------GAT-TTCATAAAGACAAACATTCTGGCCAAGTTTCGT-G--AAT-TTCAGGTA----G---ACAAT----C-TTCTAGAGCGTTA
gi|13 : gccccaaggaaggggcagataCTTAAATTTGACCTGTTGACC-TAGGTTTTGACCCCACATGACCCAGAT--TCGAACTTTACC----GAGGGA--T--T--ATCA-AGA-----CA----AACATTCTGAAA-AAGTTTCATGAAGAT----ACC-G-TC----A--T--AAATGTGA-CCTCTAG-A----GTGTTAA-CAAgatttttctatgatttgacctagtgacttagttttaaa
gi|18 : GATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCAaaaattgttt
gi|12 : gacattgaaaataattttccaaATTTGACT---TGACC-TAGTTTTTGATCTTGGGTAACCAAGTT--TCAAA--TGCAT----CCAAAA--T------TTT-ATAGTGGTTA----A-CACTGTGACC-AAGTTTCAAGAAGAT----CCA-A-TG----A--A--AAATG--------AAGCAT---GTGTTCA-CAA-----TG--TC--TC----A----TTGAA-T----TGAAC-TAGTTTT--------TGA-TC
gi|5 : ATAAACCAGATGACCAA---TGGC-------GATA--C--C--ATAA-AGA-----CA----A-AATTCTGACTTGGGTGTCATGTAGAT-----CA-GGTA----G--A--AAATGTGG--CTCTGG-A----GTGCTAA-
gi|8 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactagtctgaAT--TTAAATTGGACCAAAATCTAGA--TTTC--ATAG-AGA-----TG----AACATTCACACT-AAGTTTCATGAAG--------A-A-TGGGCCA--A--AAGTGTGG-CCTCTAA-T----GTGTTCA-CATTCT-TTT--TCTAAC----A----TTTGA-CCTTGTGACA-TAGTTTT--------TGA-CCCAA----CATGACCCA-c
gi|7 : tataatctttaaggtttcaaacttgactaagtttcAGA--T------TTC-ATA-----TAGACAAACATTCTGGCC-AAATTTCATGAATTT-----CA-GGTA----G--A--CAAT-TAATCCTCTGG-A----GCATT--------T-TT----CTATG----A----TTTGA-CCTAGTGACC-TAGTTTT--------
gi|16 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccatgtgatctgctacaagttttaactcgtctgacaacatatccataatctataatct--T--C--ATCA-ACA-----CA----AACATTCTGATC-AAGTATCATGTAAAT-----CA-G-TT----A--A--AAATGTGA-C---AAA-ATACAGTGTTAA-AAAGTT-TTT--TCTAGG----A----TTTGA-TCaaac
gi|9 : tctagatc--T--T--ATCA-AGA-----CA----AACATTTTGACA-AAATTTCATGAAGAT----TTA-A-TG----ATTATTAGAGGTG----TC-AG-A----GTGTTGA-CA--CTGTTATTCTTCTC---------TTTGA-CCaaaatttggtg
gi|2 : cccatttttgaccaatgataaacaagtctatcctggtcacgattA----AT-ATTCTGACA-AAATTTCATAAAGAT-----CAGA-TA----G--A--AAATGTGA-CCTC--T-A----GTGTTAA-----CT-ATG--TTTTTCTAGGA----TTTGA-CCTAGTGACC-TAGTTTT--------TGA-CCCCA----GGTGATCCAGTA----TC-GAACTTG-TC-CGAGA----TTT-T--ATTAAGACAGACATTCTAACCAAG--TCAT-ATTAACATTGGGCCA----A---T-ATTGTGAC-CGCTAGAGTGTCAACAgtattttttatcctaaatgacacaattttaattaaccctgatattat
gi|1 : atcttgtaaaaacaA----AT-ATTCTGACA-AAATTTCATAAAGAT-----CAGA-TA----G--A--AAATGTGA-CCTC--T-A----GTGTTAA-CA-----TTG--TTTTTC----AAGGATTTGA-CCTAGTGACC-TAGTTTT--------TGA-CCCTA----TGTGCTCCAGTA----TC-GAACTCG-TC-CGAGG----TTT-A--ATTAAAGCAGTCATTCTGACCAAGTTATAT-T--ATCATTGGGCCA----A---A-ATTGTGAC-CGCTAGAGTGTCAACAgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|15 : tttgtaaaaaca--AAATGTGA-CCTCTAG-A----GTGTTAA-CAAGCT-TTT--CCTTTA----A----CTTGA-CCTGGTGACC-TAGTTTT--------TGA-CCACA----CATGACCCA-GAT---TC-AAACTTG-AC-CGAGA----AAT-T--GTTAAAACAACTATTCTGgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|18 : TTGA-AAA-----TA--ATTTTCCAAGA----TTTGA-CCTAGTGACCCTAGTTTT--------TGA-GCCCA----GGTGACCCA-
gi|14 : gacaTTTC----C----TTTGA-CTTG---ACC-TAGTTTT--------TGT-TCTGG----GGTGACCTA-GTT---TT-GAA-TTC-AT-TCAAG----AATAC--ATAGAGGCGAACATCGTGGCAATGTTTCAT-G--AAGATCC---CA----TTTAA-AATGTAGC-CACTAGTGTGTTCACA
gi|7 : tC----A----TGTGA-TCTGCTA--C-AAGTTTTAACTCGTCTGA-CAACATATCCATAATCTA-TAA---TCTAGATTTC-AT-----------AT--------AGACAAACATTCTGGCCAAATTTCAT-G--AAagc
gi|13 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcc----A----TTTGA-CCTGTTGACC-TAGGTTT--------TGA-CCCCA----CATGACCCA-GAT---TC-GAACTTT-AC-CGAGG----GAT-T--ATCAAGACAAACATTCTGAAAAAGTTTCAT-G--AAGATACCGTCA----T---A-AATGTGAC-CTCTAGAGTGTTAACAtttcaggtagacaattaatcctctggagcatttttctatgatttgacctagtgacctagttttaaac
gi|12 : cttaa----A----TTTGA-CTTG---ACC-TAGTTTT--------TGA-TCTTG----GGTAACCAA-GTT---TC-AAA--TGCATCCAAAA----TTT-T--ATAGTGGTTAACACTGTGACCAAGTTTCAA-G--AAGATCCAATGA----A---A-AATGaaaaattgttt
gi|9 : TTTT--------TGA-CCA-------ATGA--TA-AACAAGTC-TATCCTG-GT-CACGA----TTT-T--ATCAAGACAAACATTTTGACAAAATTTCAT-G--AAGATTTAATGATTATT---A-GAGGTGTC-----AGAGTGTTGACAaagcatgtgttcacaatgtctcattgaattgaactagtttttgatc
gi|8 : cccaAT---TT-AAATTGG-AC-CAAAATCTAGAT-TTCATAGAGATGAACATTCACACTAAGTTTCATGA--AGAATG-GGCCA----A---A-AGTGTGGC-CTCTAATGTGTTCACActgttattcttctctttgaccgtattttttatcctaaatgacacaattttaattaaccctgatattat
gi|16 : tataatctttaaggtttcaaacttgactaagtttcACAAACATTCTGATCAAGTATCAT-G--TAAAT-CAGTTA----A---A-AATGTGACAAAATACAGTGTTAAttctttttctaacatttgaccttgtgacatagtttttgacccaacatgaccca
gi|15 : tctagatctcatcaac---A-AATGTGAC-CTCTAGAGTGTTAACAaaagttttttctaggatttgatcaaaatttggtg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Unaligned ( gi|17 ): TCCTGAATAAACCAGATGACCCATATAGATCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGATC
Alignments
lowQualScore : 1 1 1 333333 2222222 22 1 1 111 22222222222 333333333 111 111 11 1111111 1111 1111 1
lowQualScore : 6 7 5 5 6 1 2 333333 6 1 3 1 8888888 1 3 0 6 22 7 1 8 8 77 3 3 2 5555 0 1 7 1 111 44444444444 2 1 2 000000000 2 2 333 5 0 3 8 77 5 5 33 77 66 3 3 55 4 8 555 0 1 3 11 1 3 3 77 6666666 1 99 99 1 6 0000 5 1 7 5 2222 5 5 5 66 1 1 3 0 66 1 8 1 8 1
lowQualScore : . . . . . . . ...... . . . . ....... . . . . .. . . . . .. . . . .... . . . . ... ........... . . . ......... . . ... . . . . .. . . .. .. .. . . .. . . ... . . . .. . . . .. ....... . .. .. . . .... . . . . .... . . . .. . . . . .. . . . . .
lowQualScore : 0 0 0 0 0 0 5 000000 0 0 7 0 7777777 0 7 7 7 77 3 0 3 3 77 3 2 5 0000 5 2 8 0 777 88888888888 6 0 6 444444444 2 5 000 0 5 6 0 99 0 0 11 55 44 7 7 88 0 2 555 8 4 2 00 0 7 7 77 3333333 0 11 22 0 6 6666 0 4 6 7 1111 7 7 7 66 0 4 2 0 00 0 0 4 0 0
consensus : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTNTGACTTGACCTANTGACCTAGTTTTNGACTCCACATGACCCAGATTCGAACTTNATT-AGAGATCATAAANATAAACATTCTGACCAAGTTTCATNAA--TACANGTCATAAAAGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGATGACCTAGTTTTTGACCCCANATGAC---CCAGTTTC-AACTTAATCTAGATTTCATAAAGACGAACATTCTGGCCAAGTTTCATGAAGAT-CAN-----GTCGAAAATGTGG-C-CTCTAGAGTGTTAACAAGCT-TT-TTCTANGATTTGACCTAGTGACC-TAGTTTTTGANCCNANATGACCCAGNTTCAAACTTGACCCCGANATC--ATAAANACAAACATTCTGAC-CAAGTTTCATGAAGAT-C-A-G-TAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTNCCTNTCA----TTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACC-CAGA----TTCG-AA-CT-TGACCGAGGTNTTATTAAGACAAACATTCTGACCAAGTTTCATNAACATNNGGTCANA-AATGTGA-CCNCTAGAGTGTTAACA
Reference ( family-78 ) : NNNNNNNNTGGCCTCTAGTGTGTTAACAAGCTTTTCCTNTGATTTGACCTAGTGACCTAGTTTTTGACCCCACGTGACCCAGNTTCGAACTTNACC-AAAGATCATNAAGACAAACATTCTGACCAAGTTTCATGAAGATACANGTCAAAAATGTGACCTCTAGAGTGT-TAACAAGCTTTTCCTATGATTTGACCTGGTGACCTAGTTTTTGACCCCANATGAC---CCAGNTTCGAACTTGATCNAGANTTCATNAAGACAAACATTCTGACCAAGTTTCATGAAGATACAN-----GTCAAAAATGTGA-C-CTCTAGAGTGTTAACAAGCT-TT-TTCTATGATTTGACCTAGTGACC-TAGTTTTTGACCCCACGTGACCCAGTTTCGAACTTGACCCCGAGATC--ATNAAGACAAACATTCTGAC-CAAGTTTCATGAAGAT-C-A-G-TNGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTNTCTNTCA----TTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACC-CAGA----TTCG-AA-CT-TGACCGAGANATTATNAAGACAAACATTCTGACCAAGTTTCATGAAGATNCGGTCANA-AATGTGA-CCNCTAGAGTGTTAACA
gi|1 : TAAAAACAAATATTCTGAC-AAAATTTCATAAAGAT-C-A-GATAGAAAATGTGACCTCTAG--TGTTAACA----TTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTC-CAGT----ATCG-AA-CT-CGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAA-ATTGTGA-CCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTT---GACC-TAGTTTTTGATCTTGGGTAACCAAGTTTCAAA--TGCATCCAAAATTTTATAGTGGTTAACACTGTGAC-CAAGTTTCAAGAAGAT-CCA-A-TGAAAAATGAAGCAT-----GTGTTCACAA----TGTCT--CA----TTGAA-T----TGAACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : A----TTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACC-CAGA----TTCG-AA-CT-TTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATA-AATGTGA-CCTCTAGAGTGTTAACA
gi|14 : cttaaTTTTCCT-----TTGACTTG---ACCTAGTTTTTGTTCTGGGGTGAC---CTAGTTTTGAATTCATTCAAGAATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCC-----ATTTAAAATGTAG-C-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAA----CTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACC-CAGA----TTCA-AA-CT-TGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGATCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA------GTTAAAAATGTGA-CAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCAGATGAC---CCATAT-------------AGATCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGATaaaatttggtg
gi|18 : tcctgaataaa-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCAc
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGAC-AAAATTTCATAAAGAT-C-A-GATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGA----TTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATC-CAGT----ATCG-AA-CT-TGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAAT-ATTGTGA-CCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACC-TAGACCATTTCG-AA-CT-TGACAGGAATCTTATGGAGgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTCAAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTACTGACTTAGTTTTTG----CACATGACCCAGATTCAAACTTTACT-AAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGTGTCCTAGTTTTTGACCGCACATGAC---CCAGATTCTAACTTAACCTAGAAGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACAT-----GTCATAAATGTGG-C-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGACA-TAGTTTTTGACCCCACATGACCCAGATTCAAACTTGACTTTGAGATC--ATTAATATAATCATTCTGAC-CAAGTTTCATGAAGATAC-A-A-TAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCA----TTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACC-TATA----TTCA-AA-CT-TGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATA-AATGTGA-CCCCTAGAGTGTTAACAggt
gi|4 : tgttacatACATGACCCAAATTCCAACTTGATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTAT--TATAAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGATGATCTAGATTTTGATCTCACATAAC---CCAATGTC-------AT-TACATTT-----------ACATTCTGGCCAAGTTTTATGGAGATA-AT-----GTCATAAATGTAA-C-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTACC-TAATTTGTGAGCCAATATGACCCAGATTCTAACATGGCCTAGAGATC--ATCAATACAAACATTCTGAC-CAAGTTTCATGAAGATAC-A-G-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTA----TTTAAGCCAGATTACCTAAT
gi|5 : caCGATACC--ATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-C-AGG-TAGAAAATGTGG-CTCTGGAGTGCTAACatcgaacttgtccaacatttaatt
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactagtctgaataaaccagatgaccaatggTTTCTATGATTTGACCTAGTGACCTAGTTTTAAACTCCAGATTACCGAGTTTTGGTCTACATT------TCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTTG-TATGATTTGACCTTATGGTCTTTTTTTTTACCCCATAAGAC---TCAGTTTCAAACTTGATCTAGATTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAAT-TTCAG-----GTAGACAAT-----C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGACT-TAGTTTT
gi|7 : gccccaaggaaggggcagataTCCCA----TGTGA-TCTGCTA--CAAGTTTT--AACTCGTCTGACAACATA----TCCATAATCTATAATCTAGATTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTTCAGGT-AGACAAT-TAATCCTCTGGAGCATTaaa
gi|7 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgTAATCTAGATTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAG-----GTAGACAAT-TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGACC-TAGTTTTtttctatgatttgacctagtgacctagttttaaac
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccatgtgatctgctacaagttttaactcgtctgacaacatatccataatctaATCTAGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGA-ATGG-----GCCAAAAGTGTGG-C-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGACA-TAGTTTTTGACCCAACATGACCCAaaac
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaaTTTTTGACC---AATGATAAACAAG--TCTATCCTGGTCACGATTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGATTTAATGATTATTAGAGGTGT--------CAGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATTTTAA--TTAACCCTGATATT--AT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 11 555555555555 1 111 2222222 22222 11 11111 111 111 222222222 111 11 1 111 1111 1111
lowQualScore : 1 11 1 7 444444444444 0 8 0 111 1 1111111 1 1 88888 1 8 3 22 33333 3 2 44 55 111 7 1 000 444444444 4 11 3 4 66 99 6666 44 4 8 000 4 4 444 5 5 1 1 1 1 1 7 44 1 1 1 6 11 6 777 7 0 1 1 3 4444 6 6 4444 44 1 4 1 222 1 4 1
lowQualScore : . .. . . ............ . . . ... . ....... . . ..... . . . .. ..... . . .. .. ... . . ... ......... . .. . . .. .. .... .. . . ... . . ... . . . . . . . . .. . . . . .. . ... . . . . . .... . . .... .. . . . ... . . .
lowQualScore : 0 00 0 3 333333333333 0 8 2 000 0 5555555 0 0 88888 0 8 5 55 22222 2 5 00 44 555 6 0 000 999999999 0 11 0 0 22 11 8888 66 9 8 666 4 4 444 2 0 4 0 0 0 0 3 99 0 0 0 4 22 0 222 3 8 0 0 2 2222 7 3 2222 33 0 0 0 222 0 0 0
consensus : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTATGACTTGACCTACTGACCTAGTTTTAGACTC------CA-CATGACCCAGATTCNAACTTNATCTAGANATCATAAAGACAAACATTCTGACCAAGTTTCATNAA--TNTCAGGTCANAAAAGTGG-CCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGATG-CCTAGTTTTTGACCTCGNATGAC---CCAGTTTC-AACTTAATCT-AGATTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCNANATGACCCAGATTCAAACTTGACCTCGANATCATAAANACAAACATTCTGACN-AAGTTTCATGAAGATACA-GATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTNA----TTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNNTTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTNTGACTTGACCTANTGACCTAGTTTTNGACTC------CA-CATGACCCAGATTCGAACTTNAT-TAGAGATCATAAANATAAACATTCTGACCAAGTTTCATNAA--TA-CANGTCATAAAAGTGG-CCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGATGACCTAGTTTTTGACCCCANATGAC---CCAGTTTC-AACTTAATCT-AGATTTCATAAAGACGAACATTCTGGCCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTAACAAGCT-TT-TTCTANGATTTGACCTAGTGA-CCTAGTTTTTGANCCNANATGACCCAGNTTCAAACTTGACCCCGANATCATAAANACAAACATTCTGACC-AAGTTTCATGAAGAT-CA-G-TAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTNCCTNTCA----TTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGTNTTATTAAGACAAACATTCTGACCAAGTTTCATNAACATNNGGTCANAAATGTGACCNCTAGAGTGTTAACA
gi|1 : TAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CA-GATAGAAAATGTGACCTCTAG--TGTTAACA----TTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGT----ATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA---CCTAGTTTTTGATCTTGGGTAAC---CAAGTTTC-AAATGCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGA-ACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : A----TTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGA----TTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : cttaaTTTTCCT-----TTGACTTGA---CCTAGTTTTTGTTCTGGGGTGAC---CTAGTTTTGAATTCATTCA-AGAATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAA----CTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGA----TTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCT-AGATCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCAGATGAC---CCA----------TA---T-AGATCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Caaaatttggtg
gi|18 : tcctgaataaa-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CA-GATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGA----TTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGT----ATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACCTAGACCATTTCGAACTTGACAGGAATCTTATgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTCAAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTACTGACTTAGTTTTTG----------CA-CATGACCCAGATTCAAACTTTAC-TAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATA-CATGTCATAAATGTGG-CCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGTGTCCTAGTTTTTGACCGCACATGAC---CCAGATTCTAACTTAACCT-AGAAGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGA-CATAGTTTTTGACCCCACATGACCCAGATTCAAACTTGACTTTGAGATCATTAATATAATCATTCTGACC-AAGTTTCATGAAGATACA-A-TAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCA----TTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATA----TTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACAggagggt
gi|4 : tgttacatA-CATGACCCAAATTCCAACTTGATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTAT--TA-TAAGTCATAAAAGTGA---TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGATGATCTAGATTTTGATCTCACATAAC---CCAATGTC-A-------TT-ACATTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTA-CCTAATTTGTGAGCCAATATGACCCAGATTCTAACATGGCCTAGAGATCATCAATACAAACATTCTGACC-AAGTTTCATGAAGATACA-G-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTA----TTTAAGCCAGATTACCTAAT
gi|5 : caCGATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGG-TAGAAAATGTGG-CTCTGGAGTGCTAACatcgaacttgtccaacatttaatt
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactagtctgaataaaccagatgaccaatggTTTCTATGATTTGACCTAGTGACCTAGTTTTAAACTC------CA-GATTACCGAGTTTTGGTCTACAT-T-----TCATAAAAACAAACATTCTGACCAGGTTTCATCAA--TTTCAGGTAAAAAAAGGAG-CCTCTAGAGTGT-CAACAAGGTTTT-GTATGATTTGACCTTATGGTCTTTTTTTTTACCCCATAAGAC---TCAGTTTCAAACTTGATCT-AGATTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGA-CTTAGTTTT
gi|7 : gccccaaggaaggggcagataTCCCATG---TGATCTGCTA--CAAGTTTTA-ACTCGTCTGACAACAT-ATCCATAATCTA---TAATCTAGATTTCATATAGACAAACATTCTGGCCAAATTTCATGAA--TTTCAGGT-AGACAATTAATCCTCTGGAG-------CA---TTTTTCTATGATTTGACCTAGTGACCTAGTTTTaaa
gi|7 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgTAATCT-AGATTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGA-CCTAGTTTTaaac
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccatgtgatctgctacaagttttaactcgtctgacaacatatccataatctaAATCT-AGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGA-CATAGTTTTTGACCCAACATGACCCAaaac
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAACAAGTCT--ATCCTGGTCA-CGATTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATTTTAA--TTAACCCTGATATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 3333 11 22 1 2222 2222222 22 111 44444444444444444444 2
lowQualScore : 4 2 1111 2 7 22 1 7 3 1 3 0 1 1 00 3 1 6 3 55 777 8888 0 4444 8888888 00 777777 4 11 3 4 66 99 6666 44 4 6 000 4 4 333 5 66 1 1 1 22222222222222222222 1 1 6 77 0 3 7 888 6 22 1 22 1 1 1 333 1 1 1
lowQualScore : . . .... . . .. . . . . . . . . .. . . . . .. ... .... . .... ....... .. ...... . .. . . .. .. .... .. . . ... . . ... . .. . . . .................... . . . .. . . . ... . .. . .. . . . ... . . .
lowQualScore : 0 5 5555 5 3 33 0 3 7 0 7 7 0 0 00 7 0 7 3 88 888 3333 4 4444 6666666 11 999999 0 11 0 0 22 11 8888 66 9 9 666 4 4 111 2 44 0 0 0 44444444444444444444 0 0 3 77 4 8 3 333 7 88 4 00 0 0 0 888 0 0 0
consensus : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTNTGACTTGACCTANTGACCTAGTTTTAAACTNCACATGACCCAGATTC-AACTTGATCTANANATCATAAANATAAACATTCTGACCAAGTTTCATNAATAT-CANGTCATAAAAGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGACC-TAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGATTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTATGACTTGACCTACTGACCTAGTTTTAGACTCCACATGACCCAGATTCNAACTTNATCTAGANATCATAAAGACAAACATTCTGACCAAGTTTCATNAATNT-CAGGTCANAAAAGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGACC-TAGTTTTTGANCCNANATGACCCAGAT--TCAAACTTGACC----TCGANATCATAAANACAAACATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGATTCGAACTTGACCGAGGNNTTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
gi|1 : TAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACATTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGTATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA----CCTAGTTTTTGATCTTGGGTAAC-------CAAGTTTC-AAAT-GCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGAAC-TAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : CTTAAATTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGATTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : TTTTCCT-----TTGACTTGA----CCTAGTTTTTGTTCTGGGGTGAC-------CTAGTTTTGAATT-CATTCAAGA-ATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAACTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGATTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGA-TCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCTGAATAAACCAGAT----------GACCCATATAGATCCCATAAAGACGAGTATTCTGATT-ATGTTGCATGTAGATaaaatttggtg
gi|17 : tATATAGA-TCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Cc
gi|18 : tcctgaataaaccagatgaccc-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGTATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|3 : atcttgTAGCCTCAAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTACTGACTTAGTTTT----TGCACATGACCCAGATTCAAACTTTA-CTAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGT-GTCCTAGTTTTTGACCGCACATGAC-------CCAGATTCTAACT-TAACCTAGA-AGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGACA-TAGTTTTTGACCCCACATGACCCAGAT--TCAAACTTGACT----TTGAGATCATTAATATAATCATTCTGACC-AAGTTTCATGAAGATACA-ATAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCATTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATATTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACAgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|4 : tgttacatACATGACCCAAATTCCAACTTGATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTATTAT--AAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGAT-GATCTAGATTTTGATCTCACATAAC-------CCAATGTC-A--------TTACA-TTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTACC-TAATTTGTGAGCCAATATGACCCAGAT--TCTAACATGGCC----TAGAGATCATCAATACAAACATTCTGACC-AAGTTTCATGAAGATACAG-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAAT
gi|5 : caAGTCTGAATAAACCAGATGACCAA---TGGC-------GATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGGTAGAAAATGTGG-CTCTGGAGTGCTAACatcgaacttgtccaacatttaatt
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactTTTCTATGATTTGACCTAGTGACCTAGTTTTAAACTCCAGATTACCGAG-TT-----TTGGTCTACATTTCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTT-GTATGATTTGACCTTATGG-TCTTTTTTTTTACCCCATAAGAC-------TCAGTTTCAAACT-TGATCTAGA-TTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGACT-TAGTTTT
gi|7 : gccccaaggaaggggcagataATGTGATCTGCT-A-CA-AGTTTT--AACTCGTCTGACAACATATCCA---TA-ATCTATAATCTAGA-TTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGACC-TAGTTTTaaa
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccAATCTAGA-TTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGACA-TAGTTTTTGACCCAACATGACCCAaaac
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAA----CAAGTCT--ATCC-TGGTCACGA-TTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TTAA--TTAACC----CTGATATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 1 44444444444444444444444 11 1 111 2222 2222222 22 111 333333333 2222222 2 1111
lowQualScore : 1 1 7 4 2 2 00000000000000000000000 3 1 55 1 1 3 66 1 4 4 2 0 44 000 7777 7777 5555555 00 777777 4 11 3 4 66 99 6666 44 4 6 000 4 4 333 5 5 1 1 666 666666666 2222222 0 1 4 77 0 3 7 333 6 6 4444 1 1 1 1 1 333 1 1 1
lowQualScore : . . . . . . ....................... . . .. . . . .. . . . . . .. ... .... .... ....... .. ...... . .. . . .. .. .... .. . . ... . . ... . . . . ... ......... ....... . . . .. . . . ... . . .... . . . . . ... . . .
lowQualScore : 0 0 3 0 5 5 22222222222222222222222 2 0 00 0 0 0 55 0 0 0 5 0 00 444 3333 4444 0000000 11 999999 0 11 0 0 22 11 8888 66 9 9 666 4 4 111 2 0 4 0 444 000000000 8888888 6 0 2 77 4 8 3 000 7 3 2222 0 0 0 0 0 888 0 0 0
consensus : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTNTGACTTGACCTANTGACCTAGTTTTAAACT-CACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTCAAGGGTCTTAATAAGCTTTTCCTNTGACTTGACCTANTGACCTAGTTTTAAACTNCACATGACCCAG----ATTC-AA-CTTG-------ATCTANANATCATAAANATAAACATTCTGACCAAGTTTCATNAATAT-CANGTCATAAAAGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
gi|1 : TAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACATTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGT----ATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA----CCTAGTTTTTGATCTTGGGTAAC-------CAAGTTTC-AAAT-GCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGA-ACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : CTTAAATTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGA----TTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : TTTTCCT-----TTGACTTGA----CCTAGTTTTTGTTCTGGGGTGAC-------CTAGTTTTGAATT-CATTCAAGA-ATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAACTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGA----TTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGA-TCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCTGAATAAACCAGAT----------GACCCATATAGATCCCATAAAGACGAGTATTCTGATT-ATGTTGCATGTAGATaaaatttggtg
gi|17 : tATATAGA-TCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Cc
gi|18 : tcctgaataaaccagatgaccc-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGT----ATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACCTAGACCATTTCGAACTTGAC--AGGAATgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTCAAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTACTGACTTAGTTTT----TGCACATGACCCAG----ATTC-AAACTTT-------A-CTAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGT-GTCCTAGTTTTTGACCGCACATGAC-------CCAGATTCTAACT-TAACCTAGA-AGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGA-CATAGTTTTTGACCCCACATGACCCAGAT--TCAAACTTGACT----TTGAGATCATTAATATAATCATTCTGACC-AAGTTTCATGAAGATACA-ATAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCATTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATA----TTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACActtatggagggt
gi|4 : tgttacatACATGACCCAA----ATTCCAA-CTTG-------ATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTATTAT--AAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGAT-GATCTAGATTTTGATCTCACATAAC-------CCAATGTC-A--------TTACA-TTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTA-CCTAATTTGTGAGCCAATATGACCCAGAT--TCTAACATGGCC----TAGAGATCATCAATACAAACATTCTGACC-AAGTTTCATGAAGATACAG-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAAT
gi|5 : caAGTCTGAATAAACCAGATGACCAA---TGGC-------GATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGGTAGAAAATGTGG-CTCTGGAGTGCTAACatcgaacttgtccaacatttaatt
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactTTTCTATGATTTGACCTAGTGACCTAGTTTTAAACTCCAGATTACCGAG-----TT------TTG-------GTCTACATTTCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTT-GTATGATTTGACCTTATGG-TCTTTTTTTTTACCCCATAAGAC-------TCAGTTTCAAACT-TGATCTAGA-TTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGA-CTTAGTTTT
gi|7 : gccccaaggaaggggcagataATGTGATCTGCT-A-CA-AGTTTT--AACTCGTCTGACAACATATCCA---TA-ATCTATAATCTAGA-TTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGA-CCTAGTTTTaaa
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccGTTTCAAACT-----TGACTAAGTTTCATTT-AA-ATTGGACCAAAATCTAGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGTGTGGCCTCTAATGTGT-TCACATTCTTTTTCTAACATTTGACCTTGT-GACATAGTTTTTGACCCAACATGAC-------CCAaaac
gi|8 : tataatctttaagAATCTAGA-TTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGA-CATAGTTTTTGACCCAACATGACCCA
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAA----CAAGTCT--ATCC-TGGTCACGA-TTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TTAA--TTAACC----CTGATATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 2 11 11 333333 11111 111111 3333333 11 1 111 2222 2222222 22 111 333333333 2222222 2 1111
lowQualScore : 0 2 88 1 0 44 7 999999 1 77777 777777 2222222 3 0 22 0 1 1 66 0 1 1 2 0 44 000 7777 7777 5555555 00 777777 4 11 3 4 66 99 6666 44 4 6 000 4 4 333 5 5 1 1 666 666666666 2222222 0 1 4 77 0 3 7 333 6 6 4444 1 1 1 1 1 333 1 1 1
lowQualScore : . . .. . . .. . ...... . ..... ...... ....... . . .. . . . .. . . . . . .. ... .... .... ....... .. ...... . .. . . .. .. .... .. . . ... . . ... . . . . ... ......... ....... . . . .. . . . ... . . .... . . . . . ... . . .
lowQualScore : 0 5 00 0 7 33 0 222222 0 88888 222222 5555555 2 2 00 2 0 0 55 2 0 0 5 0 00 444 3333 4444 0000000 11 999999 0 11 0 0 22 11 8888 66 9 9 666 4 4 111 2 0 4 0 444 000000000 8888888 6 0 2 77 4 8 3 000 7 3 2222 0 0 0 0 0 888 0 0 0
consensus : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTCGAACT-C-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTC-AAGGGTCTTAATAAGCTTTTCCTNTGACTTGACCTA-NTGACCTAGTTTTAAACT-C-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
gi|1 : TAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACATTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGT----ATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA----CCTAGTTTTTGATCTTGGGTAAC-------CAAGTTTC-AAAT-GCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGA-ACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : CTTAAATTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGA----TTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : TTTTCCT-----TTGACTTGA----CCTAGTTTTTGTTCTGGGGTGAC-------CTAGTTTTGAATT-CATTCAAGA-ATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAACTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGA----TTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGA-TCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCTGAATAAACCAGAT----------GACCCATATAGATCCCATAAAGACGAGTATTCTGATT-ATGTTGCATGTAGATaaaatttggtg
gi|17 : tATATAGA-TCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Cc
gi|18 : tcctgaataaaccagatgaccc-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGT----ATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACCTAGACCATTTCGAACTTGAC--AGGAATgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTC-AAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTA-CTGACTTAGTTTT----TGC-ACATGACCCAG----ATTC-AAACTTT-------A-CTAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGT-GTCCTAGTTTTTGACCGCACATGAC-------CCAGATTCTAACT-TAACCTAGA-AGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGA-CATAGTTTTTGACCCCACATGACCCAGAT--TCAAACTTGACT----TTGAGATCATTAATATAATCATTCTGACC-AAGTTTCATGAAGATACA-ATAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCATTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATA----TTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACActtatggagggt
gi|4 : tgttacat-ACATGACCCAA----ATTCCAA-CTTG-------ATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTATTAT--AAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGAT-GATCTAGATTTTGATCTCACATAAC-------CCAATGTC-A--------TTACA-TTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTA-CCTAATTTGTGAGCCAATATGACCCAGAT--TCTAACATGGCC----TAGAGATCATCAATACAAACATTCTGACC-AAGTTTCATGAAGATACAG-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAAT
gi|4 : caCCTCTAAGTGT--TAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAATATCGAACT------TGTCCAAC----ATTT-AA-TTatcgaacttgtccaacatttaatt
gi|5 : caacatgacccaaattccaacttgatctagagatcctaaatataaacattctgaccaagtttcattattataagtcataaaagtgatctaaagggtgtaacaagctttcctacaatttgacctgatgatctagattttgatctcacataacccaatgtcattacatttacattctggccaagttttatggagataatgtcataaatgtaacctctagtgttaacaaacttttcccttgatttgacccaattacctaatttgtgagccaatatgacccagattctaacatggcctagagatcatcaatacaaacattctgaccaagtttcatgaagatacagttgtaaatgtgaAGTCTGAATAAACCAGATGACCAA---TGGC-------GATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGGTAGAAAATGTGG-CTCTGGAGTGCTAAC
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactTTTCTATGATTTGACCTA-GTGACCTAGTTTTAAACT-CCAGATTACCGAG-----TT------TTG-------GTCTACATTTCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTT-GTATGATTTGACCTTATGG-TCTTTTTTTTTACCCCATAAGAC-------TCAGTTTCAAACT-TGATCTAGA-TTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGA-CTTAGTTTT
gi|7 : gccccaaggaaggggcagataATGTGATCTGCT-A-CA-AGTTTT--AACTCGTCTGACAACATATCCA---TA-ATCTATAATCTAGA-TTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGA-CCTAGTTTTaaa
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccGTTTCAAACT------TGACTAAGTTTCATTT-AA-ATTGGACCAAAATCTAGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGTGTGGCCTCTAATGTGT-TCACATTCTTTTTCTAACATTTGACCTTGT-GACATAGTTTTTGACCCAACATGAC-------CCAaaac
gi|8 : tataatctttaagAATCTAGA-TTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGA-CATAGTTTTTGACCCAACATGACCCA
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAA----CAAGTCT--ATCC-TGGTCACGA-TTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TTAA--TTAACC----CTGATATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 1 11 11 33333333333 11111 111111 3333333 11 1 111 2222 2222222 22 111 333333333 2222222 2 1111
lowQualScore : 5 1 88 44 00000000000 1 77777 777777 2222222 3 0 22 0 1 1 66 0 1 1 2 0 44 000 7777 7777 5555555 00 777777 4 11 3 4 66 99 6666 44 4 6 000 4 4 333 5 5 1 1 666 666666666 2222222 0 1 4 77 0 3 7 333 6 6 4444 1 1 1 1 1 333 1 1 1
lowQualScore : . . .. .. ........... . ..... ...... ....... . . .. . . . .. . . . . . .. ... .... .... ....... .. ...... . .. . . .. .. .... .. . . ... . . ... . . . . ... ......... ....... . . . .. . . . ... . . .... . . . . . ... . . .
lowQualScore : 5 0 00 33 77777777777 0 88888 222222 5555555 2 2 00 2 0 0 55 2 0 0 5 0 00 444 3333 4444 0000000 11 999999 0 11 0 0 22 11 8888 66 9 9 666 4 4 111 2 0 4 0 444 000000000 8888888 6 0 2 77 4 8 3 000 7 3 2222 0 0 0 0 0 888 0 0 0
consensus : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
gi|1 : TAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACATTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGT----ATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA----CCTAGTTTTTGATCTTGGGTAAC-------CAAGTTTC-AAAT-GCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGA-ACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : CTTAAATTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGA----TTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : TTTTCCT-----TTGACTTGA----CCTAGTTTTTGTTCTGGGGTGAC-------CTAGTTTTGAATT-CATTCAAGA-ATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAACTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGA----TTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGA-TCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCTGAATAAACCAGAT----------GACCCATATAGATCCCATAAAGACGAGTATTCTGATT-ATGTTGCATGTAGATaaaatttggtg
gi|17 : tATATAGA-TCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Cc
gi|18 : tcctgaataaaccagatgaccc-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGT----ATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACCTAGACCATTTCGAACTTGAC--AGGAATgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTC-AAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTA-CTGACTTAGTTTTTG----C-ACATGACCCAG----ATTC-AAACTTT-------A-CTAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGT-GTCCTAGTTTTTGACCGCACATGAC-------CCAGATTCTAACT-TAACCTAGA-AGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGA-CATAGTTTTTGACCCCACATGACCCAGAT--TCAAACTTGACT----TTGAGATCATTAATATAATCATTCTGACC-AAGTTTCATGAAGATACA-ATAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCATTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATA----TTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACActtatggagggt
gi|4 : tgttacat-ACATGACCCAA----ATTCCAA-CTTG-------ATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTATTAT--AAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGAT-GATCTAGATTTTGATCTCACATAAC-------CCAATGTC-A--------TTACA-TTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTA-CCTAATTTGTGAGCCAATATGACCCAGAT--TCTAACATGGCC----TAGAGATCATCAATACAAACATTCTGACC-AAGTTTCATGAAGATACAG-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAAT
gi|4 : caCCTCTAAGTGT--TAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAATATC-GAACT-----TGTCCAAC----ATTT-AA-TTatcgaacttgtccaacatttaatt
gi|5 : caacatgacccaaattccaacttgatctagagatcctaaatataaacattctgaccaagtttcattattataagtcataaaagtgatctaaagggtgtaacaagctttcctacaatttgacctgatgatctagattttgatctcacataacccaatgtcattacatttacattctggccaagttttatggagataatgtcataaatgtaacctctagtgttaacaaacttttcccttgatttgacccaattacctaatttgtgagccaatatgacccagattctaacatggcctagagatcatcaatacaaacattctgaccaagtttcatgaagatacagttgtaaatgtgaAGTCTGAATAAACCAGATGACCAA---TGGC-------GATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGGTAGAAAATGTGG-CTCTGGAGTGCTAAC
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactTTTCTATGATTTGACCTA-GTGACCTAGTTTT-AAACTCCAGATTACCGAG-----TT------TTG-------GTCTACATTTCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTT-GTATGATTTGACCTTATGG-TCTTTTTTTTTACCCCATAAGAC-------TCAGTTTCAAACT-TGATCTAGA-TTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGA-CTTAGTTTT
gi|7 : gccccaaggaaggggcagataATGTGATCTGCT-A-CA-AGTTTT--AACTCGTCTGACAACATATCCA---TA-ATCTATAATCTAGA-TTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGA-CCTAGTTTTaaa
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccGTTTC-AAACT-----TGACTAAGTTTCATTT-AA-ATTGGACCAAAATCTAGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGTGTGGCCTCTAATGTGT-TCACATTCTTTTTCTAACATTTGACCTTGT-GACATAGTTTTTGACCCAACATGAC-------CCAaaac
gi|8 : tataatctttaagAATCTAGA-TTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGA-CATAGTTTTTGACCCAACATGACCCA
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAA----CAAGTCT--ATCC-TGGTCACGA-TTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TTAA--TTAACC----CTGATATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 1 11 11 33333333333 11111 111111 3333333 11 1 111 2222 2222222 22 111 333333333 2222222 2 1111
lowQualScore : 5 1 88 44 00000000000 1 77777 777777 2222222 3 0 22 0 1 1 66 0 1 1 2 0 44 000 7777 7777 5555555 00 777777 4 11 3 4 66 99 6666 44 4 6 000 4 4 333 5 5 1 1 666 666666666 2222222 0 1 4 77 0 3 7 333 6 6 4444 1 1 1 1 1 333 1 1 1
lowQualScore : . . .. .. ........... . ..... ...... ....... . . .. . . . .. . . . . . .. ... .... .... ....... .. ...... . .. . . .. .. .... .. . . ... . . ... . . . . ... ......... ....... . . . .. . . . ... . . .... . . . . . ... . . .
lowQualScore : 5 0 00 33 77777777777 0 88888 222222 5555555 2 2 00 2 0 0 55 2 0 0 5 0 00 444 3333 4444 0000000 11 999999 0 11 0 0 22 11 8888 66 9 9 666 4 4 111 2 0 4 0 444 000000000 8888888 6 0 2 77 4 8 3 000 7 3 2222 0 0 0 0 0 888 0 0 0
consensus : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
gi|1 : TAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACATTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGT----ATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA----CCTAGTTTTTGATCTTGGGTAAC-------CAAGTTTC-AAAT-GCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGA-ACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : CTTAAATTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGA----TTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : TTTTCCT-----TTGACTTGA----CCTAGTTTTTGTTCTGGGGTGAC-------CTAGTTTTGAATT-CATTCAAGA-ATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAACTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGA----TTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGA-TCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCTGAATAAACCAGAT----------GACCCATATAGATCCCATAAAGACGAGTATTCTGATT-ATGTTGCATGTAGATaaaatttggtg
gi|17 : tATATAGA-TCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Cc
gi|18 : tcctgaataaaccagatgaccc-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGACA-AAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGT----ATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACCTAGACCATTTCGAACTTGAC--AGGAATgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTC-AAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTA-CTGACTTAGTTTTTG----C-ACATGACCCAG----ATTC-AAACTTT-------A-CTAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGT-GTCCTAGTTTTTGACCGCACATGAC-------CCAGATTCTAACT-TAACCTAGA-AGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGA-CATAGTTTTTGACCCCACATGACCCAGAT--TCAAACTTGACT----TTGAGATCATTAATATAATCATTCTGACC-AAGTTTCATGAAGATACA-ATAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCATTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATA----TTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACActtatggagggt
gi|4 : tgttacat-ACATGACCCAA----ATTCCAA-CTTG-------ATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTATTAT--AAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGAT-GATCTAGATTTTGATCTCACATAAC-------CCAATGTC-A--------TTACA-TTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTA-CCTAATTTGTGAGCCAATATGACCCAGAT--TCTAACATGGCC----TAGAGATCATCAATACAAACATTCTGACC-AAGTTTCATGAAGATACAG-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAAT
gi|4 : caCCTCTAAGTGT--TAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAATATC-GAACT-----TGTCCAAC----ATTT-AA-TTatcgaacttgtccaacatttaatt
gi|5 : caacatgacccaaattccaacttgatctagagatcctaaatataaacattctgaccaagtttcattattataagtcataaaagtgatctaaagggtgtaacaagctttcctacaatttgacctgatgatctagattttgatctcacataacccaatgtcattacatttacattctggccaagttttatggagataatgtcataaatgtaacctctagtgttaacaaacttttcccttgatttgacccaattacctaatttgtgagccaatatgacccagattctaacatggcctagagatcatcaatacaaacattctgaccaagtttcatgaagatacagttgtaaatgtgaAGTCTGAATAAACCAGATGACCAA---TGGC-------GATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGGTAGAAAATGTGG-CTCTGGAGTGCTAAC
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactTTTCTATGATTTGACCTA-GTGACCTAGTTTT-AAACTCCAGATTACCGAG-----TT------TTG-------GTCTACATTTCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTT-GTATGATTTGACCTTATGG-TCTTTTTTTTTACCCCATAAGAC-------TCAGTTTCAAACT-TGATCTAGA-TTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGA-CTTAGTTTT
gi|7 : gccccaaggaaggggcagataATGTGATCTGCT-A-CA-AGTTTT--AACTCGTCTGACAACATATCCA---TA-ATCTATAATCTAGA-TTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGA-CCTAGTTTTaaa
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccGTTTC-AAACT-----TGACTAAGTTTCATTT-AA-ATTGGACCAAAATCTAGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGTGTGGCCTCTAATGTGT-TCACATTCTTTTTCTAACATTTGACCTTGT-GACATAGTTTTTGACCCAACATGAC-------CCAaaac
gi|8 : tataatctttaagAATCTAGA-TTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGA-CATAGTTTTTGACCCAACATGACCCA
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAA----CAAGTCT--ATCC-TGGTCACGA-TTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TTAA--TTAACC----CTGATATTAT
blockSeqs : T T . GA AAACTCCAGA C TTTCA CCAAC GACCAAA T GA T T C T A C G TC ATG TGT TGGG AACATAT TG TCTATA . AG G A CC TT TAGA AA T C AGC G A AGG T C C G CAG TCAAACT TTT G T TT A A A TAA G A CCAT C G A T G ACC T A T
blockSeqs : G GAACT A A TAAT . T TT C T T A A C . TT ACA TGA GCAC AAA CT ATTCA . CA A . AT TA GT C A A AGT . . AAG A . A C CAC TCTAACA CTA A T T A A A TTA . A . C A C A T TGG A T G
blockSeqs : AAACT G A TAAA . T TT G G . A T . . C ATG TGG TCAC . CA ACTTA . AA G . AT CA GT C A A AGC . . TTG C . C G AAT GACCAA CCT T C A . G A AGG . G . C T A T A ACA T A C
blockSeqs : A . . T AAC TGA CCAT . C ACTTG . CA A . AG CA GT C A A AAC . . TTG T . T G TGA TTAAT . T C C . . A TTC . A . T A A
blockSeqs : TA TCGT . A TCCTG . AA A . AG AG GT T A C AGA . . ATG T . C C AAC G . C . ATT . . . . G
blockSeqs : . CAAC . . . . AT A . GG AG TA C T G TTC . . ATG T . A T TAA
blockSeqs : A . . AG G . TA CA GT C A . C . . AAC . . .
blockSeqs : . CA A . A G . G . . . . . TCT
blockSeqs : . . . .
blockSeqCons : CAA*** TC ACG TGA* C* AGC ANG TCAA***** CTT****
originalCons : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAG----ATTC-AA-CTTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGAT-G-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TCAAACTTGACC----TNGATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
finalCons : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAG----ATTCAA---TTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGATGA-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AACT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTANGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGATTCAA-----TGACCTT----GATATCATAAANACAAATATTCTGACN-AAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA
Alignments
lowQualScore : 1 11 11 33333333333 555555555555555555555 11 1 111 111 2222222 1111111111 111 44444444444444444444444 2 1111
lowQualScore : 5 1 88 44 00000000000 1 6 222222222222222222222 3 0 22 0 1 1 66 0 1 1 2 0 0 000 555 7777 5555555 9999999999 4 11 3 4 66 99 6666 44 4 6 000 4 4 444 5 5 1 1 666 66666666666666666666666 0 1 4 77 0 3 7 333 6 6 4444 1 1 1 1 1 333 1 1 1
lowQualScore : . . .. .. ........... . . ..................... . . .. . . . .. . . . . . . ... ... .... ....... .......... . .. . . .. .. .... .. . . ... . . ... . . . . ... ....................... . . . .. . . . ... . . .... . . . . . ... . . .
lowQualScore : 5 0 00 33 77777777777 0 0 666666666666666666666 2 2 00 2 0 0 55 2 0 0 5 0 8 444 111 4444 0000000 0000000000 0 11 0 0 22 11 8888 66 9 9 666 4 4 444 2 0 4 0 444 88888888888888888888888 6 0 2 77 4 8 3 000 7 3 2222 0 0 0 0 0 888 0 0 0
consensus : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAGATTC-A-----A--TTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGATG-CCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AA-CT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTNNGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TC-A--A---TGACC----TNGATATCATAAANACAAATATTCTGAC-NAAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
Reference ( family-78 ) : NNNNNNNNTAGCCTCTAAGNGTCTTAACAAGCTTTTCCTATGATTTGACCTA-NTGACCTAGTTTC-GAACTC-ACATGACCNAGATTC-A-----A--TTG-------ATCTAGANNTCATAAAGATAAACATTCTGACCAAGTTTCATNAANAT-CAGGTCANAAANGTGGCCTCTAGAGTGT-TAACAAGCTTTTCCTACGATTTGACCTGATGACCTAGTTTTTGACCTCGNATGAC-------CCAGTTTC-AA-CT-TAATCTAGA-TTTCATAAAGACGAACATTCTGACCAAGTTTCATGAAGAT-CANGTCGAAAAT--GTGGC-CTCTAGAGTGTTNACAAGCT-TT-TTCTANGATTTGACCTAGTGA-CCTAGTTTTTGANCCCGNATGACCCAGAT--TC-A--A---TGACC----TTGATATCATAAANACAAATATTCTGAC-NAAGTTTCATGAAGATACAGATAGAAAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTNNNATTTGA-CCTGGTGACCTAGTTTTTGACCCCACGTGACCCAGA----TTCGAACTTGACCGAGGNATTATTAAGACAAACATTCTGACCAAGTTNCATNAACATNCGGCCANAANTGTGACCNCTAGAGTGTCAACA
gi|1 : TAAAAACAAATATTCTGAC-AAAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACATTGTTTTTCAAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCTATGTGCTCCAGT----ATCGAACTCGTCCGAGGTTTAATTAAAGCAGTCATTCTGACCAAGTTATATTATCATTGGGCCAAAATTGTGACCGCTAGAGTGTCAACA
gi|12 : tttgATTTGACTTGA---CCTAGTTTTTGATCTTGGGTAAC-------CAAGTTTC-AA-AT-GCATCCAAAATTTTATAGTGGTTAACACTGTGACCAAGTTTCAAGAAGAT-CCAATGAAAAAT--GAAGC-AT-----GTGTTCACAA-----T-GTCTCA---TTGA---ATTGA-ACTAGTTTTTGATCgtaaaattgttgacgaagacaggcacagggcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtaacactttaaatggtggcggcataaatatatatatatatatatatatattaaaaagaaatacaaaactccatgttttttggcatttcctagcaagtgtggttacctgtcagtggtatcaagaattatagttaatacgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggcggcataaaaatatgtatatatttaaaagaaatgcaaaattcagtgttttttttgcatttcctagcaagtgtggttacctgtcagtggtatcaagcgttgatatgcttggtaaatttgttggctccaaagtatcttcctggttccctaacatacagggcctatgttgtagctgtggttttatgatctcttcatcagattcgtgatcggaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataaaatgacagaaaactcatgtagataaaactgataaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgtattgcatcactactatttaccgactccaaggacaagccattttattgaactttcacaaatttgttaccatgacaaccacatttacgaggatcatccacataaaagagaaggagcacaactagaccaacatgtcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccatatgtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagttattgtgtagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcactgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcactttttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgagaacctggctgaaatttattacaagagggccatcatgccccagaatagttcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttctcacctgacaggaatcttatggaggg
gi|13 : CTTAAATTTGA-CCTGTTGACCTAGGTTTTGACCCCACATGACCCAGA----TTCGAACTTTACCGAGGGATTATCAAGACAAACATTCTGAAAAAGTTTCATGAAGATACCGTCATAAATGTGACCTCTAGAGTGTTAACA
gi|14 : TTTTCCT-----TTGACTTGA---CCTAGTTTTTGTTCTGGGGTGAC-------CTAGTTTTGAA-TT-CATTCAAGA-ATACATAGAGGCGAACATCGTGGCAATGTTTCATGAAGAT-CCCATTTAAAAT--GTAGC-CACTAGTGTGTTCACAAGCaaaaattgttt
gi|15 : AAATGTGACCTCTAGAGTGTTAACAAGCTTTTCCTTTAACTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCCAGA----TTCAAACTTGACCGAGAAATTGTTAAAACAACTATTCTG
gi|16 : TCTAGA-TCTCATCAACACAAACATTCTGATCAAGTATCATGTAAAT-CA-GTTAAAAAT--GTGACAAAATACAGTGTTAAAAAGTT-TT-TTCTAGGATTTGATC
gi|17 : CCTGAATAAACCAGAT-------------GACCCATATAGATCCCATAAAGACGAGTATTCTGAT-TATGTTGCATGTAGATaaaatttggtg
gi|17 : tATATAGA-TCCCATAAAGACGAGTATTCTGATTATGTTGCATGTAGAT-Cc
gi|18 : tcctgaataaaccagatgaccc-TT-TTCCAAGATTTGACCTAGTGACCCTAGTTTTTGAGCCCAGGTGACCCA
gi|2 : gacattgaaaataaTAAAAACAAATATTCTGAC-AAAATTTCATAAAGAT-CAGATAGAAAATGTGACCTCTAG--TGTTAACTATGTTTTTCTAGGATTTGA-CCTAGTGACCTAGTTTTTGACCCCAGGTGATCCAGT----ATCGAACTTGTCCGAGATTTTATTAAGACAGACATTCTAACCAAGTCATATTAACATTGGGCCAATATTGTGACCGCTAGAGTGTCAACA
gi|2 : atcttgTAACTCAAC-TGACCTAGACCATTTCGAACTTGAC--AGGAATgtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcataactcaactgacctagaccatttcgaacttgacaggaatcttatggagggt
gi|3 : atcttgtaaaaacaaatattctgacaaaatttcataaagatcagatagaaaatgtgacctctagtgttaactatgtttttctaggatttgacctagtgacctagtttttgaccccaggtgatccagtatcgaacttgtccgagattttattaagacagacattctaaccaagtcatattaacattgggccaatattgtgaccgctagagtgtcaacagtaaaattattgacgaagacaggcacagagcaatcacaatagctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtcacactttaaatggtggcggtataaaaatatgtatatatattaaaaagaaatacaaaactccgtgtttttttgacatttcctagcaagtgtggttacctgtcagtggtatcaagaattacagttactgcgcatatactgtgtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgccccataaccattctttaaatggtggtggcataaaaatatgtatatttttaaaagaaatgcaaaactcagtgattacctgtcagtggtatcaagctttgatatgctttgtaaatttgttggctccaaagtatcttcctggttccccaacatacagggcctatgttgtagctgtggttttatgatctcttcatcggattcgtgatcgtaactatcaaagctacctgcaagttttgtttgtaaatattaaaacataagatgacagaaaacacatgtagataaaactgatgaagatcatttacttattttcattttctggggcatttgtgttgaccatcatcattgaatggaaacatcactactatttaccgactccaaggacaagccattttattgaactttcaaaaatttgttaccatgacaaccacattaacgaggatcatccacatagaagagaaggagcacaactagaccaacatatcaagggtttagtgcaaaactgttctatatccttctttattcatatacacagtttagccataagtcttcgatatgaactttccagccaatgttaaagtttgtagtgccagctgtatttcagtaatagtgcagacaagaaatattttgtccaaaagatatgtggtgatgtgcaaatgaaatgcattgaaataattagtctgtatccaaataacgaaatattagctgagtaattgataactggtgaattttgagcatttaatttagtgttgcaattcttgatgataaattaattaaacattatttgtctcaaatcattaacaactcacaagacaggaaaatagggttttgataacctggctgaaatttattacaagagggccatcatgccccagaatagctcaccagattatttattgactgtaacttgcattcactctaggtgcatttttacaacttttgataatttaagggaacataagtcaagcaTAGCCTC-AAGGGTCTTAATAAGCTTTTCCTTTGACTTGACCTA-CTGACTTAGTTTTTG----C-ACATGACCCAGATTC-A-----AACTTT-------A-CTAAAAATCATCAAGATAAACATTCTGACCAAGTTTCATGAAGATACATGTCATAAATGTGGCCTCTAGAATGT-TAACAAGCTTTTCCTATGGTTTGACCTGGTGTCCTAGTTTTTGACCGCACATGAC-------CCAGATTCTAA-CT-TAACCTAGA-AGTCATCAAAATAAACATTCTGACCAAATTTCATGAAGATACATGTCATAAAT--GTGGC-CTCTAGAATGTTAACAAGCT-TT-TCCTTTGATTTGACCAGGTGA-CATAGTTTTTGACCCCACATGACCCAGAT--TC-A--AACTTGACT----TTGAGATCATTAATATAATCATTCTGAC-CAAGTTTCATGAAGATACA-ATAAAAAATGTGACCTCAAGAGTGTTAAAAAGCTTTACCTTTCATTTGA-CCTGGTGACCTAGTTTTTGACCACACATGACCTATA----TTCAAACTTGATTAAGGGATTGTTGAGACAAACATTCTGACCAAGTTTCACAAACATACAGTCATAAATGTGACCCCTAGAGTGTTAACActtatggagggt
gi|4 : tgttacat-ACATGACCCAAATTCCA-----AC-TTG-------ATCTAGAGATCCTAAATATAAACATTCTGACCAAGTTTCATTATTAT--AAGTCATAAAAGTGA--TCTAAAGGGTGTAACAAGCTTT-CCTACAATTTGACCTGATGATCTAGATTTTGATCTCACATAAC-------CCAATGTC-A---------TTACA-TTT-----------ACATTCTGGCCAAGTTTTATGGAGAT-AATGTCATAAAT--GTAAC-CTCTAG--TGTTAACAAACT-TT-TCCCTTGATTTGACCCAATTA-CCTAATTTGTGAGCCAATATGACCCAGAT--TCTAACA---TGGCC----TAGAGATCATCAATACAAACATTCTGAC-CAAGTTTCATGAAGATACAG-TTGTAAATGTGACCTCTA-AGTGTTAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAAT
gi|4 : caCCTCTAAGTGT--TAACAAGCTTTTCCTATTATTTAAGCCAGATTACCTAATATC-GAACT-----TGTCCAACATTT-A-----A--TTatcgaacttgtccaacatttaatt
gi|5 : caacatgacccaaattccaacttgatctagagatcctaaatataaacattctgaccaagtttcattattataagtcataaaagtgatctaaagggtgtaacaagctttcctacaatttgacctgatgatctagattttgatctcacataacccaatgtcattacatttacattctggccaagttttatggagataatgtcataaatgtaacctctagtgttaacaaacttttcccttgatttgacccaattacctaatttgtgagccaatatgacccagattctaacatggcctagagatcatcaatacaaacattctgaccaagtttcatgaagatacagttgtaaatgtgaAGTCTGAATAAACCAGATGACC-A--A---TGGC-------GATACCATAAAGACAAA-ATTCTGACTTGGGTGTCATGTAGAT-CAGGTAGAAAATGTGG-CTCTGGAGTGCTAAC
gi|6 : tgtaatatgtagttgtccgaaaatccattaaacggtttcagagatatgtatccggaccggcggacatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatacagaaaatgatttgcaacaacatagtattagcctggtgcacatcagttaaatatagtatacatttacttacaattatagttactgtgaataacctgggtattaattcaggagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcactTTTCTATGATTTGACCTA-GTGACCTAGTTTT-AAACTCCAGATTACCGAG-TT-----------TTG-------GTCTACATTTCATAAAAACAAACATTCTGACCAGGTTTCATCAATTT-CAGGTAAAAAAAGGAGCCTCTAGAGTGT-CAACAAGGTTTTG-TATGATTTGACCTTATGGTCTTTTTTTTTACCCCATAAGAC-------TCAGTTTC-AAACT-TGATCTAGA-TTTCATAAAGACAAACATTCTGGCCAAGTTTCGTGAATTT-CAGGTAGACAAT------C-TTCTAGAGCGTT----AGAT-TT-TTCTATGATTTGACCTAGTGA-CTTAGTTTT
gi|7 : gccccaaggaaggggcagataATGTGATCTGCTA--CAAGTTTT--AACTCGTCTGACAACATATCCA---TA-AT-CTATAATCTAGA-TTTCATATAGACAAACATTCTGGCCAAATTTCATGAATTT-CAGGTAGACAAT--TAATC-CTCTGGAG------CA---T-TT-TTCTATGATTTGACCTAGTGA-CCTAGTTTTaaa
gi|8 : acaaaggctcttgcaactttcgtcctttcaagcactgaactctgtggagtcgatagatttaagtgtgcatggcaacagagtgtcccGTTTC-AAACT-----TGACTAAGTTTC-ATTTAAA--TTGGACCAAAATCTAGATTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGTGTGGCCTCTAATGTGT-TCACATTCTTTTTCTAACATTTGACCTTGTGACATAGTTTTTGACCCAACATGAC-------CCAaaac
gi|8 : tataatctttaagAATCTAGA-TTTCATAGAGATGAACATTCACACTAAGTTTCATGAAGAA-TGGGCCAAAAGT--GTGGC-CTCTAATGTGTTCACATTCT-TT-TTCTAACATTTGACCTTGTGA-CATAGTTTTTGACCCAACATGACCCA
gi|9 : tataatctttaaggtttcaaacttgactaagtttcatttaaattggaccaaTTTTTGACC---AATGATAAA----CAAGTCT--AT-CC-TGGTCACGA-TTTTATCAAGACAAACATTTTGACAAAATTTCATGAAGAT-TTAAT-GATTATTAGAGGT-GTC-AGAGTGTTGACA--CTGTTATTCTTCTCTTTGACC--GT-------ATTTTTTATCCTAAATGACACAATT--TT-A--AT--TAACC----CTGATATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTCCTCTGAAATCGTTCAATTCTCCATTTTCCAAGATCACAAGGGCTCTTGCAACTTTGGTCCTTTCAAGCACTGAACTCTGGAGTCGATAGATTTCAGTGTGCATGGCAACAGTGTCCCATGTGATCTGCTACAAGTTTTAACTCGTCTGATGACATATCCATAATCTGTAA
Unaligned ( gi|11 ): ATTTTCCCTGCAGTTTGCCCAGTTTTCCATTTTGGGCTACTTTTGTTCTTTCAAGTAAAGACGACTGCAACTTGTAGACATTTGTATGAATTTCTACTGAATGGCCCATATGGTCCGCAACCAGCTTCAACTCATCGCTGGTCATATCCATGACCTA