lowQualScore : 111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1 444 222222222222222222222222222222222 11 111 11 4444444444444 222222222 1111 1111 44444444444444444444444444444444 555555555555555555555 22222222222222222222 111 22 999999999999999999999999 111 1 33333 44 1 1 1 1 22 3333 444 7777777777 11 11 1 1 33333 22222 222222222222222222222222222222222222 1 555555555555555 111 1 999999999999 1 1 1 2222 3333 1
lowQualScore : 0 000 0 222222222222222222222222222222222 4 2 33 777 6 33 3333333333333 8 6 666666666 2222 77 0 5 5 2222 5 55555555555555555555555555555555 66 555555555555555555555 4 1 22 88888888888888888888 111 3 33 6 6 4 7 4 1 000000000000000000000000 888 8 6 7 3 7 4 8 11111 6 66 7 5 5 6 5 66 1111 777 4 3333333333 44 6 33 7 5 0 0 55555 44444 3 888888888888888888888888888888888888 5 2 0 4 999999999999999 777 0 4 6 888888888888 3 5 1 5 0 0 0 4444 1 77 3333 3 5 1
lowQualScore : . ... . ................................. . . .. ... . .. ............. . . ......... .... .. . . . .... . ................................ .. ..................... . . .. .................... ... . .. . . . . . . ........................ ... . . . . . . . ..... . .. . . . . . .. .... ... . .......... .. . .. . . . . ..... ..... . .................................... . . . . ............... ... . . . ............ . . . . . . . .... . .. .... . . .
lowQualScore : 0 888 2 888888888888888888888888888888888 0 2 88 555 5 88 4444444444444 0 0 666666666 1111 99 6 7 7 1111 7 99999999999999999999999999999999 33 000000000000000000000 3 9 00 00000000000000000000 222 7 00 0 0 0 3 7 0 777777777777777777777777 333 3 0 3 7 0 7 3 77777 0 00 0 0 0 0 0 00 0000 000 0 5555555555 33 7 00 8 0 5 0 00000 00000 2 555555555555555555555555555555555555 0 5 0 0 888888888888888 555 0 0 5 999999999999 2 4 0 0 5 8 8 0000 7 44 2222 9 3 6
consensus : TATT-ACAA--GTAACGTT------T---NTACG-TC-T----GCTCAT-TTGTNACTT--TGTTT---TGTTGTAT--ATTACAGTAATTTTCT------TA-CCTCATGTAA-------CTGTA----A--TAAAATCACCTT-ATTA-CA----CAGA-A-----------ATGT------AG---------AGTTGANCGGAAAT---ACTCGGG----TCGC--NTGTANGTAATTAAGGTT-------AA---T-------TAACACG-ANATAAAACATCCCAGTCTNCTGATATTTCCTACTGATTATATCAGAGGTGTGACTNTAATTAAATACAGTTTCCTGTCATTTNTTGAAATGTGACGCGTTAATTATTCCTTC----TT---AGAATGA-TAAC-CGGAAACTGACCACTATATAATATG-CACAAACCATGTCCAGTTATATCCAACATNTGATAACAACATTGTTATGTNCTTGTAA--AGCATGCTCTGCAAC-AGAGTAGGGACTCTTAAGTCGAGGTATGAAATNGTGTTTCTGACTTTTCTGTTATTTCTGTNACTATTAC-TTTTTTCATATCATAACTTTACGNGGATCAGNATATGGGTATTTG-TCC----AATTAATTCAANC---GAATGAAATTGAAATGTA-AT--AGCA--TTCTTAGGT--TA------------ATCAGCATAAGGTCACTGTT-ANTA------A--------AAA---GTA-AANTACGTTTCTATTCAATAT-G-A----TTTACAGGCGTATATTGACTNCTTTGCACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( gi|2 ) : TATT-ATAA-AGTAACGTT------T---GTACAATCGTA---GTTTATTTGGTAATTT--TGTTT---TGTTGTAT--ATTACAGTAACGATCT------TA-CTTCACGTTA-------CTGTA----A--TAAAATCACCTT-ATTA-CA----CAGA-A-----------ATGT------AC---------AGTTGATCGGAAAT---TATTGGG----TTAT--CTGTAGGTAATTAAGGTT-------AA---T-------TAACACG-AGATAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTCTTTGTTAGAAGAATGAGTAACCTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAA--TGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTGTAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTG-TC-----AATTAATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTT-ATTA------A--------AAA---ATA-AATTACGTTTCTATTCAATATAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|5 : TATTGATAA--GTAATCTT------TTTTATACAATCTTT---GATTATTTTGTAACTT--TGTTT---TTTTATATAAATTGTAGTAAAGTTCTTTGGTGTATTTTTGTGTTATAGTTGCCTGTATCTTACCTCATATAACTTT-ATTATTATCTCCTGATA-----------AT-T------AC-----------CTG----GAAAT---ACTTGGG----TCAC--ATGTATGTAAATAAGGTA-------AA---TTAACAAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC-------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTG--TGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTAT--TTTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTC-----AATTAATTCAAT-----A--------GAAATGTC-AT--AACA--TTC-TAGGT--AA------------ATCAGCATATGGTCACTGTA-AATA------G--------AAATGGATAGAATTA------TATTCAATAT--------TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGATA
gi|10 : atTATT-ACA---GTAACGTT------T---TTAC-----------CTCAT---GTTACTT--TGTTT---TGTTGTAT--ATTACAGTAATTTTTT------TA-CCTCATGCAA-------CTGTA----A--TAAATTCATCTC-GTTA-CA----CAGA-A-----------ATGT------AG---------AGTTGATCGGAAAT---ACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTT-------AA---T-------TAAacatggaatactttaataaggtaaca
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTATT-ACA---GTAACGTT------T---TTAC-----------CTCAT---GTTACTT--TGTTT---TGTTGTAT--ATTACAGTAATTTTTT------TA-CCTCATGCAA-------CTGTA----A--TAAATTCATCTC-GTTA-CA----CAGA-A-----------ATGT------AG---------AGTTGATCGGAAAT---ACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTT-------AA---T-------TA
gi|1 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgta-ATAACAGTAACATTCTTTGGT---GTATGTTTGTGTATGTTTGTGTTATAGTTTCCTGTTTACCTGTT-------TTACTGTT----TCC------GA-CTTCATATAA-------CTTTG----A--TAAAATCACCTT-ATTA-CA----CAGA-A-----------ATGA------AG---------AGTTGGCCGAAAAT---ACTTGGG----TCAC--ATGTAGATCATTAAGATTAATTAAAAA---T-------TAACACG-ATATGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTAT--TAAAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTC----TTAGAAGAATGATTAACATGGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTAT-----ACATATGATAACAACATTGATATGTCCTAGTAA--AGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTTA-TTTTGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTG-TCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA-----TTAGGTAATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAGA--------AAA---GTA-AAACATGTTTCTGTTCAATATTGAA--------CAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|7 : taaaatattataataatattatttagtaagtttgtaatgttatataaCT------TA-CCTCATATCA-------CTTTA----A--TAAAATCACCTT-ATTA-CA----CAGA-AATGAAGAAATCACGTCTCTCAACGCAGAAATGAGTTGGTCGGAAATACCTAT---A----TCAC--ATGTACGCAATTAA--TT-------AACAAT-------TAACACG-ATATAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTTGTT---AGAATGAGTAACCCGGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAA--ACCATGCTCTGCccttataacgattttactgttttaaagtagtctttactt
gi|9 : aattacagtaacattctttggtgtatttttgtgttatagtttcctatttacctgttttactatagA----A--TAAGGTCATTTT-A----------CAGC-A-----------GTGT------AT---------AGTTGAACGGAAAT---ACTCCTG----TCAC--CTATATGCAATTAA
gi|8 : aatcattaggtttcttatatcaataattttagatatatagtttcaagtttttaaaaacctttttttttatttatttgacaaaatagtttataaatgaatttttgaactgtaggtcacaatggaattgagaaatatacgatgcgctaatcatatgacataatggcaaagtagcaaactttgatattcagatcactgacagctttgttttgaggatttggactaaggtattatgtgtcagcattgtttttattatactaaaatggtgtcatataaacatgA----A--CAAGAATACGTTCATTT-TA----CATC-A-----------ATGA------AG---------AGTTGAACGGAAAT---ACTCGTG----TAAT--TTGTATGTAATTAAATGC-------AA---T-------T--TAAG-GGGCAATATATCCCatgcacttaccgggaaatatatcccgatactataatttacgtt
gi|16 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacggtgtcatataAAACTTTACGTTGATCAGAATATGAGTTTTTG-TC-----AATTAATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTT-ATTA------A--------AAA---ATA-AATTACGTTTCTATTCAATATAGTATATATTgattagataatttac
gi|12 : TTCACGAGGATCAGTTTATGGGTATTTG-TCC----AAATAATCCAAAC---GAATGAAATTGAAATGTA-G----------------------------------ATCAGCATAAGGTAA----T-AAAA------AGGAAAAGAAAA---GAA-AAATACGTTTCTATTCAATAT--------TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|14 : aaCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAccttaaaacgacttttatttttatgaagaattatttactt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGcnnnnnnnnnnnnn
gi|17 : cataagATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAA
gi|4 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAgattataactgttatcaagtattacttact
gi|3 : aACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : aACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TATTAACTTTAGTTATATTATCGGATGCACTTTGATGTTCTGTGTTAACATTGGTAATATTTTTAATGACGTCATACAAGCATGGATATGGTCATTATACAGCAGTGTAGAGTTGTACAAATATACTCGTTTCACTTATATGTAATTAAATGCAGTTAACGAAAGAACATATCCTGGTTATATAATTTACGTT
Unaligned ( gi|15 ): CGTATGGCAAGAATAAGGTTATTTTATAGCAGTTTAAAAAACTAGAGTGAAAAACTCGTGTAATCCGTTTGTAATTAAATGCAATTTACGGGGAAATATATCCAGATAAGAGAATCTACATTAAAGAGAATTTATCAGGATTTTTTCTAACTT
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG
Alignments
lowQualScore : 33 55555555555555555555 11 111 111111 1111 1111 1 33333333333333333333333333 22222222222 2222222 2222222 999999999999999999999999999999 333 1 1 11111111 1111 111 777777777777777777777777777777777777 4444444444444444 4444444444 1 111 2222
lowQualScore : 77 1 88888888888888888888 1 888 11 222 8 7 3 444444 9999 7777 3333 2 555 3 0 7 44 44 22 4 0 5 77777777777777777777777777 1 3 00000000000 1 11 5555555 1 1111111 1 6 1 1 1 3 1 999999999999999999999999999999 666 4 3 1 1 4 2 3 0 0 88 0 8888 7 2 1 88888888 2 1 1 1 1 3 7777 0 3 444 444444444444444444444444444444444444 1 1 9999999999999999 6 8 8 4444444444 0 0 3 3 0 77 111 0 33 5555 1
lowQualScore : .. . .................... . ... .. ... . . . ...... .... .... .... . ... . . . .. .. .. . . . .......................... . . ........... . .. ....... . ....... . . . . . . . .............................. ... . . . . . . . . . .. . .... . . . ........ . . . . . . .... . . ... .................................... . . ................ . . . .......... . . . . . .. ... . .. .... .
lowQualScore : 88 0 99999999999999999999 0 888 00 777 2 3 6 111111 3333 7777 1111 5 444 6 9 3 00 55 88 1 6 0 77777777777777777777777777 0 6 55555555555 0 66 0000000 4 7777777 0 7 7 0 0 2 0 000000000000000000000000000000 888 0 2 0 0 0 5 3 7 7 33 7 0000 3 0 0 33333333 5 0 0 4 4 2 0000 8 8 000 222222222222222222222222222222222222 4 0 0000000000000000 4 8 0 8888888888 8 8 3 7 8 88 777 2 22 4444 0
consensus : TATTACA--GTAACGTTTTTACG-T--T-GTTTAT-TTGGTNAC---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAATNTTCTTA----CCT----CATGTNACTNT-A-ATAA-AATCACCTC-ATTACACAGNAATGNAGA--------------------------GTTGANCGGAAATACTCGTG----TCAC--CTGTATGTAATTAAGGTT-------AATTAACA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTC----TT-G-----AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTGTTATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCAATA-TA------ATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( family-7673 ) : TATTACAA-GTAACGTTTNTACG-TC-T-GCTCAT-TTG-TNAC---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAATTTTCTTA----CCT----CATGTAACTGT-A-ATAA-AATCACCTT-ATTACACAGAAATGTAGA--------------------------GTTGANCGGAAATACTCGGG----TCGC--NTGTANGTAATTAAGGTT-------AATTAACA-------CGANA-TAAAACATCCCAGTCTNCTGATATTTCCTACTGATTATATCAGAGGTGTGACTNTAATTAAATACAGTTTCCTGTCATTTNTTGAAATGTGACGCGTTAATTATTCCTTC----TT-------AGAATGA-TAA-C-C-GGAAACTGACCACTATATAATATG-CACAAACCATGTCCAGTTATATCCAACATNTGATAACAACATTGTTATGTNCTTGTAAAGCATGCTCTGCAAC-AGAGTAGGGACTCTTAAGTCGAGGTATGAAATNGTGTTTCTGACTTTTCTGTTATTTCTGTNACTATTAC-TTTTTTCATATCATAACTTTACGNGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--AGCA--TTCTTAGGT--TA------------ATCAGCATAAGGTCACTGTTANT-------A--------AAAAGTAAANTACGTTTCTATTCAATA-TG------ATTTACAGGCGTATATTGACTNCTTTGCACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
gi|1 : ATGTTTGT--G-TA-T-GTTTGTGTTA-TAGT---TTCCTGTTTACCTGTT-------TTA-CT---GT----TTCCGA----CTT----CATATAACTTT-G-ATAA-AATCACCTT-ATTACACAGAAATGAAGA--------------------------GTTGGCCGAAAATACTTGGG----TCAC--ATGTAGATCATTAAGATTAATTAAAAATTAACA-------CGATA-TGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTAT--TAAAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTC----TTAGA----AGAATGATTAA-CAT-GGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTAT-----ACATATGATAACAACATTGATATGTCCTAGTAAAGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTTATTT-TGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTGTCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA-----TTAGGTAATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAG--------AAAAGTAAAACATGTTTCTGTTCAATATTG------A---ACAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|10 : taaaatattataataatattatttagtaagtttgtaatgttatataaataacagtaacattctttggtgtTTAT-TTGGTAAC---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAACGTTTTTA----CCT----CATGTTACTccttataacgattttactgttttaaagtagtctttactt
gi|10 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC--------CTCAT---G-TTAC---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAATTTTTTTA----CCT----CATGCAACTGT-A-ATAA-ATTCATCTC-GTTACACAGAAATGTAGA--------------------------GTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTT-------AATTAAttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaattaa
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTAT-TTGGTAAC---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAACGTTTTTA----CCT----CATGTTACT
gi|11 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC--------CTCAT---G-TTAC---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAATTTTTTTA----CCT----CATGCAACTGT-A-ATAA-ATTCATCTC-GTTACACAGAAATGTAGA--------------------------GTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTT-------AATTAttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaatta
gi|12 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTCACGAGGATCAGTTTATGGGTATTTGTCCAAATA----ATCCAAAC---GAATGAAATTGAAATGTA-G----------------------------------ATCAGCATAAGGTAA----TAAA-------AAGGAAAAGAAAAGAAAAATACGTTTCTATTCAATA-T--------TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|13 : aaAC---TT--TGAT-----GTTCTGT-G-TTAACATTGGTAATATTTTTAATGACGT----CATACAAGCAT-GGATAT-GGTCA------TTATACAGCAGTGTAGA--------------------------GTTGTACAAATATACTCGTT----TCAC--TTATATGTAATTAAATGC-------AGTTA--A-------CGAAA-GAACATATCCTGGTccttaaaacgacttttatttttatgaagaattatttactt
gi|14 : tattaactttagttatattatcggatgcCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAtatataatttacgtt
gi|16 : AACTTTACGTTGATCAGAATATGAGTTTTTGTC-AATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCAATA-TA------GTATATAcnnnnnnnnnnnnn
gi|17 : aATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAAtt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGgattataactgttatcaagtattacttact
gi|2 : cataagTATTATAAAGTAACGTTTGTACAATCGTAGTTTAT-TTGGTAAT---TT--TGTTT---TGTTGTAT-A-TTA-CA---GTAACGATCTTA----CTT----CACGTTACTGT-A-ATAA-AATCACCTT-ATTACACAGAAATGTACA--------------------------GTTGATCGGAAATTATTGGG----TTAT--CTGTAGGTAATTAAGGTT-------AATTAACA-------CGAGA-TAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTC----TTTGTTAGAAGAATGAGTAA-C-CTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAATGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTGTAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTGT-CAATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCAATA-TAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|3 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAA
gi|3 : a--TGTTC---TGTTTTACCA-TTG------GTA-TTATCATA----CTTGAATCGCGTCA-TAT-ACACAAGAATTAGGTC-ATTTTACATCATTGAAGA--------------------------GTTGAACGGAAATACTCGTG----TAAT--CCATATGTAATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : a--TGTTC---TGTTTTACCA-TTG------GTA-TTATCATA----CTTGAATCGCGTCA-TAT-ACACAAGAATTAGGTC-ATTTTACATCATTGAAGA--------------------------GTTGAACGGAAATACTCGTG----TAAT--CCATATGTAATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|5 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaTTT---TGTGTTAT-AGTTG-CCT--GTA----TCTTA----CCT----CATATAACTTT-A-TTAT-TATCTCCTG-AT---------------A--------------------------ATTACCTGGAAATACTTGGG----TCAC--ATGTATGTAAATAAGGTA-------AATTAACAAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC-------------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTGTGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTATT--TTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTCAATTA----ATTC-------------AATAGAAATGTC-AT--AACA--TTC-TAGGT--AA------------ATCAGCATATGGTCACTGTAAAT-------A--------GAAA-TGGA-TAGAATTATATTCAATA-T--------TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGAT-AACATatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : attattgataagtaatcttttttatacaatctttgattattttgtaactttgtttttttatataaattgtagtaaagttctttggtgtatACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAggaatactttaataaggtaaca
gi|7 : actaacagtacctcATTACA--GTAACATTCTTTGG-TG-T-ATTTTT-GTG-TTATAGTTTCCTATTTACCTGTT-T-T-A-CTA-TA---G-------CTTA----CCT----CATATCACTTT-A-ATAA-AATCACCTT-ATTACACAGAAATGAAGAAATCACGTCTCTCAACGCAGAAATGAGTTGGTCGGAAATACCTATA----TCAC--ATGTACGCAATTAA--TTAAC----AATTAACA-------CGATA-TAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTTGTT-------AGAATGAGTAACC-C-GGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAAACCATGCTCTGCccttaaaacgacttttatttttatgaagaattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcactagttttgttatatcaatagttttagaaataaagttttaaaatcaaaattcgttttttatttgatataatagtttactaatgaatttctgaactgtatgccacgatgaaagttaaaaatatataatgcactaatcgtatggca
gi|8 : aT----CATATAA-------ACAA-GAATACGTTCATTTTACATCAATGAAGA--------------------------GTTGAACGGAAATACTCGTG----TAAT--TTGTATGTAATTAA
gi|9 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacggtgT----CATATAAACATGA-ATAA-GGTCATTTT-A-----CAGCAGTGTATA--------------------------GTTGAACGGAAATACTCCTG----TCAC--CTATATGCAATTAAATGC-------ACTTACCG-------GGAAA-T---ATATCCCatgcaatttaaggggcaatatatcccgattagataatttac
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CGTATGGCAAGAATAAGGTTATTTTATAGCAGTTTAAAAAACTAGAGTGAAAAACTCGTGTAATCCGTTTGTAATTAAATGCAATTTACGGGGAAATATATCCAGATAAGAGAATCTACATTAAAGAGAATTTATCAGGATTTTTTCTAACTT
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG
Alignments
lowQualScore : 4444444444444444444444444444444444444444 1111111 2222222222222222222 111111 111 11111 222222222222 1111 22222222222222222 777777777777 222222 11 11 1 1 11111111 1111 111 666666666666666666666666666666666666 44444444444444444 55555555 1 111 2222
lowQualScore : 99 1 9999999999999999999999999999999999999999 0 1111111 5555555555555555555 555555 555 222 2 2 1 8 4 00000 333333333333 2 2 0 5 1 1 3 1 99 4444 11 888 99999999999999999 1 6 1 0 0 3 1 000000000000 2 999999 666 1 3 0 1 1 1 2 44 0 11 7777 6 2 88888888 0 2 1 1 1 1 3 7777 0 3 444 666666666666666666666666666666666666 1 1 33333333333333333 6 8 11111111 1 0 0 3 1 0 77 111 0 33 5555 1
lowQualScore : .. . ........................................ . ....... ................... ...... ... ... . . . . . ..... ............ . . . . . . . . .. .... .. ... ................. . . . . . . . ............ . ...... ... . . . . . . . .. . .. .... . . ........ . . . . . . . .... . . ... .................................... . . ................. . . ........ . . . . . . .. ... . .. .... .
lowQualScore : 22 7 0000000000000000000000000000000000000000 4 8888888 5555555555555555555 000000 444 777 2 5 0 0 0 11111 444444444444 6 3 6 8 0 0 8 6 22 2222 66 888 33333333333333333 0 7 7 2 8 2 2 888888888888 5 000000 888 0 2 2 2 0 0 0 00 7 00 7777 0 0 00000000 7 5 4 0 4 4 2 0000 8 8 000 000000000000000000000000000000000000 4 4 00000000000000000 4 8 88888888 0 8 8 0 0 8 88 777 2 22 4444 0
consensus : TATTACA--GTAACGTTCTTAC----GTTGT-TTATTTG-GTN-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGTA-A-TAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTC-TT------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTGT-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------AA--------AAAGTAAANTACGTTTCTATTCAATATA-------TTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( family-7673 ) : TATTACA--GTAACGTTTTTAC----GTTGT-TTATTTG-GTN-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATNTT---CTTACCTCATGTNACTNTA-A-TAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTCACCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTC-TT------G--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTGTTATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------AA--------AAAGTAAANTACGTTTCTATTCAATATA------ATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
gi|1 : ATAACA--GTAACATTCTT-T----GGTGT-ATGTTTGTGTA-T-------GT------TTGTGTTATAGTTTCCTGTT----------T-ACCTGTTTTA-CT---GT----TT---CCGACTTCATATAACTTTG-A-TAA-A---ATCAC----C-------TTATTACACAGAAATGAAGAGTTGGCCGAAAATACTTGGGTCACATGTA--GATC----ATTAAGATTAA---TTAAAAATTAACA-------CGATA-TGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATTA--AAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTC-TT------AGAAGAATGATTAA-CAT-GGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTATA-----CATATGATAACAACATTGATATGTCCTAGTAAAGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTTATTT-TGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTGTCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA-----TTAGGTAATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAGA--------AAAGTAAAACATGTTTCTGTTCAATAT--------TGAACAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|10 : taaaatattataataatattatttagtaagtttgtaatgttatataa-TTATTTG-GTA-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACTTTccttataacgattttactgttttaaagtagtctttactt
gi|10 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC--------C-TCAT----GTT-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGTA-A-TAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAA-------gttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaattaa
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgta-TTATTTG-GTA-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACTTT
gi|11 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC--------C-TCAT----GTT-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGTA-A-TAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaatta
gi|12 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTCACGAGGATCAGTTTATGGGTATTTGTCCAAATA----ATCCAAAC---GAATGAAATTGAAATGTA-G----------------------------------ATCAGCATAAGGTAA----TAAA-------AAGGAAAAGAAAAGAAAAATACGTTTCTATTCAATAT--------TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|13 : aaTAAC---TTTA-----GTTATATTATCGG-ATGCA-------CT------TTGAT--GT-------TCTG----------T-G------TTAACATTGGTAATATT---TTTA----ATG--AC-GTC-A-TAC-A---AGCAT----GGATATGGTCATTATACAGCAGTGTAGAGTTGTACAAATATACTCGTTTCACTTATA--TGTA----ATTAAATGCAG---TTA---------A-------CGAAA-GAACATATCCTGGTccttaaaacgacttttatttttatgaagaattatttactt
gi|14 : tatCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAtatataatttacgtt
gi|15 : GAAAAACTCGTGTAATCCGTT--TGTA----ATTAAcnnnnnnnnnnnnn
gi|16 : cgtatggcaagaataaggttattttatagcagtttaaaaaactagagtAACTTTACGTTGATCAGAATATGAGTTTTTGTC-AATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------AA--------AAAATAAATTACGTTTCTATTCAATATA------GTATATAatgcaatttacggggaaatatatccagataagagaatctacattaaagagaatttatcaggattttttctaactt
gi|17 : aATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAAtt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGgattataactgttatcaagtattacttact
gi|2 : cataagTATTATAAAGTAACGTTTGTACAATCGTAGT-TTATTTG-GTA-A-------TT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGAT---CTTACTTCACGTTACTGTA-A-TAA-A---ATCAC----C-------TTATTACACAGAAATGTACAGTTGATCGGAAATTATTGGGTTATCTGTA--GGTA----ATTAAGGTTAA---TTAA-------CA-------CGAGA-TAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTC-TTTGTTAGA--AGAATGAGTAA-C-CTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAATGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTGTAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTGT-CAATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------AA--------AAAATAAATTACGTTTCTATTCAATATAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|3 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAA
gi|3 : aTGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TATACA-CAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aTGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TATACA-CAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|5 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaATTGTA--GTAAAGTTCTT-------TGGT-GTATTT----------------------TTGT---GT-------TATA------------G------TTG-CCT--GTA----T---CTTACCTCATATAACTTTA-T-TAT-T---ATCTC----C-------TGAT---------------AATTACCTGGAAATACTTGGGTCACATGTA--TGTA----AATAAGGTAAA---TTAA-------CAAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC------------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTGTGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTAT--TTTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTCAATTA----ATTC-------------AATAGAAATGTC-AT--AACA--TTC-TAGGT--AA------------ATCAGCATATGGTCACTGTAAAT-------AG--------AAA-TGGA-TAGAATTATATTCAATAT--------TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGAT-AACATatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : attattgataagtaatcttttttatacaatctttgattattttgtaactttgtttttttatataaACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAggaatactttaataaggtaaca
gi|7 : actaacagtacctcATTACA--GTAACATTCTT-T----GGTGT-ATTTTTGTGTT-ATAGTTTCCTATTTACCTGTTTTAC-------TATAGCTTACCTCAT-A------TCA-CT---TTAATAAA---ATCACCTTATTACACAGAA-A-TGA-AGAAATCACGTCTC-------TCA--ACGCAGAAATG---AGTTGGTCGGAAATACCTATATCACATGTA--CGCA----ATTAA--TTAACAATTAA-------CA-------CGATA-TAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTT------GTTAGAATGAGTAACC-C-GGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAAACCATGCTCTGCccttaaaacgacttttatttttatgaagaattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcactagttttgttatatcaatagttttagaaataaagttttaaaatcaaaattcgttttttatttgatataatagtttactaatgaatttctgaactgtatgccacgatgaaagttaaaaatatataatgcactaatcgtatggca
gi|8 : aTGTCA-TATA-AACAA-G---AATACG---T-------TCATTTTACATCAATGAAGAGTTGAACGGAAATACTCGTGTAATTTGTA--TGTA----ATTAA
gi|9 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacgg-------TCATTTTACAGCAGTGTATAGTTGAACGGAAATACTCCTGTCACCTATA--TGCA----ATTAAATGCAC---TTAC-------CG-------GGAAA-T---ATATCCCatgcaatttaaggggcaatatatcccgattagataatttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG
Alignments
lowQualScore : 4444444444444444444444444444444444444444 1111111 2222222222222222222 111111 111111111 11111 2222222222222 1111 22222222222222222 66666666666666 222222 11 11 2222 1 11111111 1111 111 666666666666666666666666666666666666 44444444444444444 2222222 2 1 111 2222
lowQualScore : 99 7777777777777777777777777777777777777777 0000000 3 1111111111111111111 444444 444444444 11 2 0 4 8 00000 5555555555555 2 2 0 5 1 1 1 1 99 4444 11 888 99999999999999999 1 6 1 0 0 3 1 33333333333333 2 999999 666 1 3 0 1 1 1 2 44 0 11 7777 5555 2 88888888 0 2 1 1 1 1 3 7777 0 3 444 666666666666666666666666666666666666 1 1 33333333333333333 6 8 6666666 0 3 0 3 1 0 77 111 0 33 5555 1
lowQualScore : .. ........................................ ....... . ................... ...... ......... .. . . . . ..... ............. . . . . . . . . .. .... .. ... ................. . . . . . . . .............. . ...... ... . . . . . . . .. . .. .... .... . ........ . . . . . . . .... . . ... .................................... . . ................. . . ....... . . . . . . .. ... . .. .... .
lowQualScore : 22 8888888888888888888888888888888888888888 8888888 1 9999999999999999999 333333 777777777 44 2 4 0 0 11111 1111111111111 6 3 6 8 0 0 0 6 22 2222 66 888 33333333333333333 0 7 7 2 8 2 2 88888888888888 5 000000 888 0 2 2 2 0 0 0 00 7 00 7777 0000 0 00000000 7 5 4 0 4 4 2 0000 8 8 000 000000000000000000000000000000000000 4 4 00000000000000000 4 8 0000000 4 2 8 0 0 8 88 777 2 22 4444 0
consensus : TATTACA--GTAACGTTCTTAC----GTTGT-TTATTTG-GTA-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------AA--------AAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( family-7673 ) : TATTACA--GTAACGTTCTTAC----GTTGT-TTATTTG-GTN-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------AA--------AAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
gi|1 : ATAACA--GTAACATTCTT-T----GGTGT-ATGTTTGTGTA-T-------GT------TTGTGTTATAGTTTCCTGTT----------T-ACCTGTTTTA-CT---GT----TT---CCGACTTCATATAACTTT-G-ATAA-A---ATCAC----C-------TTATTACACAGAAATGAAGAGTTGGCCGAAAATACTTGGGTCACATGTA--GATC----ATTAAGATTAA---TTAAAAATTAACA-------CGATA-TGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATTA--AAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTCT---T------AGAAGAATGATTAA-CAT-GGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTATA-----CATATGATAACAACATTGATATGTCCTAGTAAAGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTT-ATTT-TGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTGTCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA-----TTAGGTAATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAGA--------AAAGTAAAACATGTTTCTGTTCA-------ATAT-TGAACAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|10 : taaaatattataataatattatttagtaagtttgtaatgttatataa-TTATTTG-GTA-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACTccttataacgattttactgttttaaagtagtctttactt
gi|10 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC--------C-TCAT----GTT-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGT-A-ATAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAA-------ttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaattaa
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgta-TTATTTG-GTA-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACT
gi|11 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC--------C-TCAT----GTT-A-------CT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGT-A-ATAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaatta
gi|12 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTCACGAGGATCAGTTTATGGGTATTTGTCCAAATA----ATCCAAAC---GAATGAAATTGAAATGTA-G----------------------------------ATCAGCATAAGGTAA----TAAA-------AAGGAAAAGAAAAGAAAAATACGTTTCTATTCA-------ATAT-TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|13 : aaTTA-----GTTATATTATCGG-ATGCA-------CT------TTGAT--GT-------TCTG----------T-G------TTAACATTGGTAATATT---TTTA----ATG--AC-GT-C-ATAC-A---AGCAT----GGATATGGTCATTATACAGCAGTGTAGAGTTGTACAAATATACTCGTTTCACTTATA--TGTA----ATTAAATGCAG---TTA---------A-------CGAAA-GAACATATCCTGGTccttaaaacgacttttatttttatgaagaattatttactt
gi|14 : tattaactCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAtatataatttacgtt
gi|15 : GAAAAACTCGTGTAATCCGTT--TGTA----ATTAAcnnnnnnnnnnnnn
gi|16 : cgtatggcaagaataaggttattttatagcagtttaaaaaactagagtAACTTTACGTTGATCAGAATATGAGTTTTTGTC-AATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------AA--------AAAATAAATTACGTTTCTATTCA-------ATATAatgcaatttacggggaaatatatccagataagagaatctacattaaagagaatttatcaggattttttctaactt
gi|17 : aATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAAgtatatatt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGgattataactgttatcaagtattacttact
gi|2 : cataagTATTATAAAGTAACGTTTGTACAATCGTAGT-TTATTTG-GTA-A-------TT------TTGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGAT---CTTACTTCACGTTACTGT-A-ATAA-A---ATCAC----C-------TTATTACACAGAAATGTACAGTTGATCGGAAATTATTGGGTTATCTGTA--GGTA----ATTAAGGTTAA---TTAA-------CA-------CGAGA-TAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTCT---TTGTTAGA--AGAATGAGTAA-C-CTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAATGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTG-TAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTGT-CAATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------AA--------AAAATAAATTACGTTTCTATTCAATATAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|3 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAA
gi|3 : aTGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TAT-ACACAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aTGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TAT-ACACAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|5 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaATTGTA--GTAAAGTTCTT-------TGGT-GTATTT----------------------TTGT---GT-------TATA------------G------TTG-CCT--GTA----T---CTTACCTCATATAACTTT-A-TTAT-T---ATCTC----C-------TGAT---------------AATTACCTGGAAATACTTGGGTCACATGTA--TGTA----AATAAGGTAAA---TTAA-------CAAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC--------------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTGTGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTA-T--TTTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTCAATTA----ATTC-------------AATAGAAATGTC-AT--AACA--TTC-TAGGT--AA------------ATCAGCATATGGTCACTGTAAAT-------AG--------AAA-TGGA-TAGAATTATATTCA-------ATAT-TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGAT-AACATatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : attattgataagtaatcttttttatacaatctttgattattttgtaactttgtttttttatataaACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAggaatactttaataaggtaaca
gi|7 : actaacagtacctcATTACA--GTAACATTCTT-T----GGTGT-ATTTTTGTGTT-ATAGTTTCCTATTTACCTGTTTTAC-------TATAGCTTACCTCAT-A------TCA-CT---TTAATAAA---ATCACCTTATTACACAGA-A-ATGA-AGAAATCACGTCTC-------TCA--ACGCAGAAATG---AGTTGGTCGGAAATACCTATATCACATGTA--CGCA----ATTAA--TTAACAATTAA-------CA-------CGATA-TAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTTGT------T--AGAATGAGTAACC-C-GGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAAACCATGCTCTGCccttaaaacgacttttatttttatgaagaattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcactagttttgttatatcaatagttttagaaataaagttttaaaatcaaaattcgttttttatttgatataatagtttactaatgaatttctgaactgtatgccacgatgaaagttaaaaatatataatgcactaatcgtatggca
gi|8 : a-------TCATTTTACATCAATGAAGAGTTGAACGGAAATACTCGTGTAATTTGTA--TGTA----ATTAA
gi|9 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacggtgtcatataaacaagaatacgt-TTATGTG-TCA-G-------CA------TTGTTTTTA-------T-TA----------T-A------CTA-AA---ATGGTGT-----------CATATAAACATGA-ATAA-G---GTCA----------------TTTTACAGCAGTGTATAGTTGAACGGAAATACTCCTGTCACCTATA--TGCA----ATTAAATGCAC---TTAC-------CG-------GGAAA-T---ATATCCCatgcaatttaaggggcaatatatcccgattagataatttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG
Alignments
lowQualScore : 44444444444 2222222222222222 1111111 2222222222222222222 111111 111111111 11111 2222222222222 1111 22222222222222222 66666666666666 222222 11 11 2222 1 11111111 1111 111 666666666666666666666666666666666666 4444444444444444 2222222 2 1 111 2222
lowQualScore : 99 99999999999 4 3333333333333333 555 0000000 3 1111111111111111111 444444 444444444 11 2 0 4 8 00000 5555555555555 2 2 0 5 1 1 1 1 99 4444 11 888 99999999999999999 1 6 1 0 0 3 1 33333333333333 2 999999 666 1 3 0 1 1 1 2 44 0 11 7777 5555 2 88888888 0 2 1 1 1 1 3 7777 0 3 444 666666666666666666666666666666666666 1 1 9999999999999999 6 8 6666666 0 3 0 3 1 0 77 111 0 33 5555 1
lowQualScore : .. ........... . ................ ... ....... . ................... ...... ......... .. . . . . ..... ............. . . . . . . . . .. .... .. ... ................. . . . . . . . .............. . ...... ... . . . . . . . .. . .. .... .... . ........ . . . . . . . .... . . ... .................................... . . ................ . . ....... . . . . . . .. ... . .. .... .
lowQualScore : 22 00000000000 0 4444444444444444 888 8888888 1 9999999999999999999 222222 777777777 44 2 4 0 0 11111 1111111111111 6 3 6 8 0 0 0 6 22 2222 66 888 33333333333333333 0 7 7 2 8 2 2 88888888888888 5 000000 888 0 2 2 2 0 0 0 00 7 00 7777 0000 0 00000000 7 5 4 0 4 4 2 0000 8 8 000 000000000000000000000000000000000000 4 4 0000000000000000 4 8 0000000 4 2 8 0 0 8 88 777 2 22 4444 0
consensus : TATTACA--GTAACGTTCTTAC----GT-TGT-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( family-7673 ) : TATTACA--GTAACGTTCTTAC----GT-TGT-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
gi|1 : ATAACA--GTAACATTCTT-T----GG-TGT-ATGTTTGTGTA---------TGTT---TGTGTTATAGTTTCCTGTT----------T-ACCTGTTTTA-CT---GT----TT---CCGACTTCATATAACTTT-G-ATAA-A---ATCAC----C-------TTATTACACAGAAATGAAGAGTTGGCCGAAAATACTTGGGTCACATGTA--GATC----ATTAAGATTAA---TTAAAAATTAACA-------CGATA-TGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATTA--AAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTCT---T------AGAAGAATGATTAA-CAT-GGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTATA-----CATATGATAACAACATTGATATGTCCTAGTAAAGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTT-ATTT-TGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTGTCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA-----TTAGGTAATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAG--------AAAAGTAAAACATGTTTCTGTTCA-------ATAT-TGAACAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|10 : taaaatattataataatattatttagtaagtttgtaatgttatataa-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACTccttataacgattttactgttttaaagtagtctttactt
gi|10 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC---------C-TCAT----GTT---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGT-A-ATAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAA-------ttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaattaa
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgta-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACT
gi|11 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC---------C-TCAT----GTT---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGT-A-ATAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaatta
gi|12 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTCACGAGGATCAGTTTATGGGTATTTGTCCAAATA----ATCCAAAC---GAATGAAATTGAAATGTA-G----------------------------------ATCAGCATAAGGTAA----TAAA-------AAGGAAAAGAAAAGAAAAATACGTTTCTATTCA-------ATAT-TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|13 : aaTTA-----GT-TATATTATCGG-ATGC--------ACTT---TGAT--GT-------TCTG----------T-G------TTAACATTGGTAATATT---TTTA----ATG--AC-GT-C-ATAC-A---AGCAT----GGATATGGTCATTATACAGCAGTGTAGAGTTGTACAAATATACTCGTTTCACTTATA--TGTA----ATTAAATGCAG---TTA---------A-------CGAAA-GAACATATCCTGGTccttaaaacgacttttatttttatgaagaattatttactt
gi|14 : tattaactCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAtatataatttacgtt
gi|15 : GAAAAACTCGTGTAATCCGTT--TGTA----ATTAAcnnnnnnnnnnnnn
gi|16 : cgtatggcaagaataaggttattttatagcagtttaaaaaactagagtAACTTTACGTTGATCAGAATATGAGTTTTTGTC-AATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCA-------ATATAatgcaatttacggggaaatatatccagataagagaatctacattaaagagaatttatcaggattttttctaactt
gi|17 : aATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAAgtatatatt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGgattataactgttatcaagtattacttact
gi|2 : cataagTATTATAAAGTAACGTTTGTACAATCGT-AGT-TTATTTG-GTA---------ATTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGAT---CTTACTTCACGTTACTGT-A-ATAA-A---ATCAC----C-------TTATTACACAGAAATGTACAGTTGATCGGAAATTATTGGGTTATCTGTA--GGTA----ATTAAGGTTAA---TTAA-------CA-------CGAGA-TAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTCT---TTGTTAGA--AGAATGAGTAA-C-CTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAATGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTG-TAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTGT-CAATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCAATATAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|3 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAA
gi|3 : a---TGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TAT-ACACAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : a---TGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TAT-ACACAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|5 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaATTGTA--GTAAAGTTCTT-------T-GGT-GTATTT-----------------T---TGT---GT-------TATA------------G------TTG-CCT--GTA----T---CTTACCTCATATAACTTT-A-TTAT-T---ATCTC----C-------TGAT---------------AATTACCTGGAAATACTTGGGTCACATGTA--TGTA----AATAAGGTAAA---TTAA-------CAAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC--------------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTGTGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTA-T--TTTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTCAATTA----ATTC-------------AATAGAAATGTC-AT--AACA--TTC-TAGGT--AA------------ATCAGCATATGGTCACTGTAAAT-------A--------GAAA-TGGA-TAGAATTATATTCA-------ATAT-TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGAT-AACATatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : attattgataagtaatcttttttatacaatctttgattattttgtaactttgtttttttatataaACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAggaatactttaataaggtaaca
gi|7 : actaacagtacctcATTACA--GTAACATTCTTTG----GTGTAT-TTTTGTG-TTATAGTTTCCTATTTACCTGTTTTAC-------TATAGCTTACCTCAT-A------TCA-CT---TTAATAAA---ATCACCTTATTACACAGA-A-ATGA-AGAAATCACGTCTC-------TCA--ACGCAGAAATG---AGTTGGTCGGAAATACCTATATCACATGTA--CGCA----ATTAA--TTAACAATTAA-------CA-------CGATA-TAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTTGT------T--AGAATGAGTAACC-C-GGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAAACCATGCTCTGCccttaaaacgacttttatttttatgaagaattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcactagttttgttatatcaatagttttagaaataaagttttaaaatcaaaattcgttttttatttgatataatagtttactaatgaatttctgaactgtatgccacgatgaaagttaaaaatatataatgcactaatcgtatggca
gi|8 : a-------TCATTTTACATCAATGAAGAGTTGAACGGAAATACTCGTGTAATTTGTA--TGTA----ATTAA
gi|9 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacggtgtcatataaacaagaatacgt-TTATGTG-TCA---------GCAT---TGTTTTTA-------T-TA----------T-A------CTA-AA---ATGGTGT-----------CATATAAACATGA-ATAA-G---GTCA----------------TTTTACAGCAGTGTATAGTTGAACGGAAATACTCCTGTCACCTATA--TGCA----ATTAAATGCAC---TTAC-------CG-------GGAAA-T---ATATCCCatgcaatttaaggggcaatatatcccgattagataatttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG
Alignments
lowQualScore : 44444444444 2222222222222222 1111111 2222222222222222222 111111 111111111 11111 2222222222222 1111 22222222222222222 66666666666666 222222 11 11 2222 1 11111111 1111 111 666666666666666666666666666666666666 4444444444444444 2222222 2 1 111 2222
lowQualScore : 99 99999999999 4 3333333333333333 555 0000000 3 1111111111111111111 444444 444444444 11 2 0 4 8 00000 5555555555555 2 2 0 5 1 1 1 1 99 4444 11 888 99999999999999999 1 6 1 0 0 3 1 33333333333333 2 999999 666 1 3 0 1 1 1 2 44 0 11 7777 5555 2 88888888 0 2 1 1 1 1 3 7777 0 3 444 666666666666666666666666666666666666 1 1 9999999999999999 6 8 6666666 0 3 0 3 1 0 77 111 0 33 5555 1
lowQualScore : .. ........... . ................ ... ....... . ................... ...... ......... .. . . . . ..... ............. . . . . . . . . .. .... .. ... ................. . . . . . . . .............. . ...... ... . . . . . . . .. . .. .... .... . ........ . . . . . . . .... . . ... .................................... . . ................ . . ....... . . . . . . .. ... . .. .... .
lowQualScore : 22 00000000000 0 4444444444444444 888 8888888 1 9999999999999999999 222222 777777777 44 2 4 0 0 11111 1111111111111 6 3 6 8 0 0 0 6 22 2222 66 888 33333333333333333 0 7 7 2 8 2 2 88888888888888 5 000000 888 0 2 2 2 0 0 0 00 7 00 7777 0000 0 00000000 7 5 4 0 4 4 2 0000 8 8 000 000000000000000000000000000000000000 4 4 0000000000000000 4 8 0000000 4 2 8 0 0 8 88 777 2 22 4444 0
consensus : TATTACA--GTAACGTTCTTAC----GT-TGT-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( family-7673 ) : TATTACA--GTAACGTTCTTAC----GT-TGT-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
gi|1 : ATAACA--GTAACATTCTT-T----GG-TGT-ATGTTTGTGTA---------TGTT---TGTGTTATAGTTTCCTGTT----------T-ACCTGTTTTA-CT---GT----TT---CCGACTTCATATAACTTT-G-ATAA-A---ATCAC----C-------TTATTACACAGAAATGAAGAGTTGGCCGAAAATACTTGGGTCACATGTA--GATC----ATTAAGATTAA---TTAAAAATTAACA-------CGATA-TGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATTA--AAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTCT---T------AGAAGAATGATTAA-CAT-GGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTATA-----CATATGATAACAACATTGATATGTCCTAGTAAAGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTT-ATTT-TGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTGTCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA-----TTAGGTAATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAG--------AAAAGTAAAACATGTTTCTGTTCA-------ATAT-TGAACAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|10 : taaaatattataataatattatttagtaagtttgtaatgttatataa-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACTccttataacgattttactgttttaaagtagtctttactt
gi|10 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC---------C-TCAT----GTT---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGT-A-ATAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAA-------ttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaattaa
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgta-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGTT---TTTACCTCATGTTACT
gi|11 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTTTTTAC---------C-TCAT----GTT---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATTTT---TTTACCTCATGCAACTGT-A-ATAA-A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaatta
gi|12 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTCACGAGGATCAGTTTATGGGTATTTGTCCAAATA----ATCCAAAC---GAATGAAATTGAAATGTA-G----------------------------------ATCAGCATAAGGTAA----TAAA-------AAGGAAAAGAAAAGAAAAATACGTTTCTATTCA-------ATAT-TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|13 : aaTTA-----GT-TATATTATCGG-ATGC--------ACTT---TGAT--GT-------TCTG----------T-G------TTAACATTGGTAATATT---TTTA----ATG--AC-GT-C-ATAC-A---AGCAT----GGATATGGTCATTATACAGCAGTGTAGAGTTGTACAAATATACTCGTTTCACTTATA--TGTA----ATTAAATGCAG---TTA---------A-------CGAAA-GAACATATCCTGGTccttaaaacgacttttatttttatgaagaattatttactt
gi|14 : tattaactCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAtatataatttacgtt
gi|15 : GAAAAACTCGTGTAATCCGTT--TGTA----ATTAAcnnnnnnnnnnnnn
gi|16 : cgtatggcaagaataaggttattttatagcagtttaaaaaactagagtAACTTTACGTTGATCAGAATATGAGTTTTTGTC-AATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCA-------ATATAatgcaatttacggggaaatatatccagataagagaatctacattaaagagaatttatcaggattttttctaactt
gi|17 : aATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAAgtatatatt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGgattataactgttatcaagtattacttact
gi|2 : cataagTATTATAAAGTAACGTTTGTACAATCGT-AGT-TTATTTG-GTA---------ATTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAACGAT---CTTACTTCACGTTACTGT-A-ATAA-A---ATCAC----C-------TTATTACACAGAAATGTACAGTTGATCGGAAATTATTGGGTTATCTGTA--GGTA----ATTAAGGTTAA---TTAA-------CA-------CGAGA-TAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTCT---TTGTTAGA--AGAATGAGTAA-C-CTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAATGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTG-TAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTGT-CAATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGT--TA------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCAATATAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|3 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAA
gi|3 : a---TGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TAT-ACACAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : a---TGTTCTGT-------TTTA----------CCA------TTG------GTATTATCATACTTGAATCGCGTCA-TAT-ACACAAGA---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|5 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagaATTGTA--GTAAAGTTCTT-------T-GGT-GTATTT-----------------T---TGT---GT-------TATA------------G------TTG-CCT--GTA----T---CTTACCTCATATAACTTT-A-TTAT-T---ATCTC----C-------TGAT---------------AATTACCTGGAAATACTTGGGTCACATGTA--TGTA----AATAAGGTAAA---TTAA-------CAAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC--------------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTGTGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTA-T--TTTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTCAATTA----ATTC-------------AATAGAAATGTC-AT--AACA--TTC-TAGGT--AA------------ATCAGCATATGGTCACTGTAAAT-------A--------GAAA-TGGA-TAGAATTATATTCA-------ATAT-TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGAT-AACATatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : attattgataagtaatcttttttatacaatctttgattattttgtaactttgtttttttatataaACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAggaatactttaataaggtaaca
gi|7 : actaacagtacctcATTACA--GTAACATTCTTTG----GTGTAT-TTTTGTG-TTATAGTTTCCTATTTACCTGTTTTAC-------TATAGCTTACCTCAT-A------TCA-CT---TTAATAAA---ATCACCTTATTACACAGA-A-ATGA-AGAAATCACGTCTC-------TCA--ACGCAGAAATG---AGTTGGTCGGAAATACCTATATCACATGTA--CGCA----ATTAA--TTAACAATTAA-------CA-------CGATA-TAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTTGT------T--AGAATGAGTAACC-C-GGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAAACCATGCTCTGCccttaaaacgacttttatttttatgaagaattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcactagttttgttatatcaatagttttagaaataaagttttaaaatcaaaattcgttttttatttgatataatagtttactaatgaatttctgaactgtatgccacgatgaaagttaaaaatatataatgcactaatcgtatggca
gi|8 : a-------TCATTTTACATCAATGAAGAGTTGAACGGAAATACTCGTGTAATTTGTA--TGTA----ATTAA
gi|9 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacggtgtcatataaacaagaatacgt-TTATGTG-TCA---------GCAT---TGTTTTTA-------T-TA----------T-A------CTA-AA---ATGGTGT-----------CATATAAACATGA-ATAA-G---GTCA----------------TTTTACAGCAGTGTATAGTTGAACGGAAATACTCCTGTCACCTATA--TGCA----ATTAAATGCAC---TTAC-------CG-------GGAAA-T---ATATCCCatgcaatttaaggggcaatatatcccgattagataatttac
blockSeqs : AA ACAATCGTAG A GTGTTATAGTTTCCT ACC . G GCTTACCTCATA ACATTG TTATCATAC CC T G C AGAA TGGATATGG A A T T G A T GT GGTT GG CAA ACAAATAACA A A A T A TTTGTTAGA G CCTT GAT T T T A G A GG TT GACC TAA T CTATTGCT C A T G A C . A . ATGGCAATTTCTTCGGTTA A A AAGGAAAAG G A ATATAGT A A T C T GA TAA TA CAAA T
blockSeqs : . TGGTGTA . CGGATGC . . G CCA CCT TTATCATAC CC A . C GA CGTCTC A A T T G A T GT GGTT GG . ACA G . A T G TTTGTT G CCCG GAT A T A T C G A G . T C . C T A A T C . T . ATGGCAATTTCTTCGGTTA T T A A T . A A T A G AG . TT CAAA C
blockSeqs : . AGTTA . TTGGTA . . G CCA CA ACGTTT CC T . . GA TC A C T A T C T . . AT . ACA A . A T A . . . GTC A T T T C A C T A A T T . T . ATAACATTCTAGGTAA T T A A T . . . G C G AG . TA CAAA C
blockSeqs : . TGG . TTGGTA . . G TA CA ATTTTT CC A . . A TC A A T T T A C . . GG . CCG T . A T G G A . . . . G C A A . . . . T A G G . TA CAAA C
blockSeqs : . AC . TTGGTA . . C TA CA ACGTTT CT T . . A CC T C A A G T C . . GG . A A . . G T . A . AT AA A
blockSeqs : AC . GTGTCA . . G TA CA ATTTTT AA C . . A GG T C A A T A C . . AT . AT . A
blockSeqs : . GTT . . T TA CA ATATTT AA C . . A GG A A A C T A C . . . . . . T
blockSeqs : . GTT . . T TG CT ACGATC CC A . . T CC T C T T G C A . . .
blockSeqs : . TT . . A TA AA ATAAAA CC C . . G . T C . A T C A . .
blockSeqs : . . A TA . GTGT . A . . . A T A T . .
blockSeqs : . . . G . TC . . T C C . .
blockSeqCons : TAN******** TTGGTA********** ******* TA***************** ACGTTT*** ACG************** **** *** ATGGCATTCTGGTA********************** A*************** CAAA
originalCons : TATTACA--GTAACGTTCTTAC----GT-TGT-TTATTTG-GTA---------ACTT---TGTTTTGT-------TGTA----------T-A------TTA-CA---GTAATGTT---CTTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------CA-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTNGGT--TA------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
finalCons : TATTACA--GTAACGTTCTTTAN--------T-TTATTTGGTA----------ACTT---TGTTTTGT-------TGTATA-----------------TTA-CA---GTAACGTTT---TTACCTCATGTNACTGT-A-ATAA-A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAACG--------------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTAATGGCATTCTGGTA----------------------ATCAGCATAAGGTCACTGTTAATA---------------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 1111111 3333333333333333333333 1111111111111 11111111111 1111111111 11111111 11111 2222222222222 1111 333333333333333333 66666666666666 222222 11 11 2222 1 11111111 1111 111 00000000000000000000000000000000000000 4444444444444444 2222222 2 1 111 2222
lowQualScore : 99 0 8888888 1 3333333333333333333333 777 5555555555555 777 33333333333 8888888888 888 44444444 8888 00000 33 55 777 2222222222222 2 2 0 5 1 1 1 1 99 4444 9999 666 777777777777777777 1 4 0 0 3 1 33333333333333 2 999999 666 1 3 0 1 1 1 2 44 0 11 7777 5555 2 88888888 0 2 1 1 1 1 3 7777 0 3 444 99999999999999999999999999999999999999 1 1 9999999999999999 6 8 6666666 0 3 0 3 1 0 77 111 0 33 5555 1
lowQualScore : .. . ....... . ...................... ... ............. ... ........... .......... ... ........ .... ..... .. .. ... ............. . . . . . . . . .. .... .... ... .................. . . . . . . .............. . ...... ... . . . . . . . .. . .. .... .... . ........ . . . . . . . .... . . ... ...................................... . . ................ . . ....... . . . . . . .. ... . .. .... .
lowQualScore : 22 1 6666666 0 6666666666666666666666 000 5555555555555 000 22222222222 9999999999 111 55555555 5555 00000 99 55 000 6666666666666 6 3 6 8 0 0 0 6 22 2222 0000 444 333333333333333333 0 4 2 8 2 2 88888888888888 5 000000 888 0 2 2 2 0 0 0 00 7 00 7777 0000 0 00000000 7 5 4 0 4 4 2 0000 8 8 000 00000000000000000000000000000000000000 4 4 0000000000000000 4 8 0000000 4 2 8 0 0 8 88 777 2 22 4444 0
consensus : TATTACA--GTAACGTTCTT-------TGGTTTAT--TT----G-GTA---------ACTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAACGTTTT--------TAC----CTCA-----TGTNACTGTAATAA--A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGNTCAA---TTAA-------C-G-------CGAAA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGG-T-A---------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
Reference ( family-7673 ) : TATTACA--GTAACGTTCTT-------TANTTTAT--TT----G-GTA---------ACTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAACGTTTT--------TAC----CTCA-----TGTNACTGTAATAA--A---ATCAC----C-------TCATTACACAGNAATGNAGAGTTGANCGGAAATACTCGTGTNATCTGTA--TGTA----ATTAAGGTTAA---TTAA-------C-G-------CGANA-TAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCT---T------A--AGAATGAGTAA-C-C-GGAAACTGACCACTATATAATATGATACAANCCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTTCTNGTAAANCGTGCTCTGCAAC-GGAGTAGGGACTCTTAAATCGAGGTATGAAATCGTGTTTTTGACCTTTCTG-T-ATTTCTGTTACTATTGC-TTTTTTCATATCGTAACTTTACGTGGATCAGNATATGGGTATTTGTCCAATTA----ATTCAANC---GAATGAAATTGAAATGTA-AT--GGCA--TTCT--GG-T-A---------------ATCAGCATAAGGTCACTGTTAAT-------A--------AAAAGTAAANTACGTTTCTATTCA-------ATATATTTACAGGCGTATATTGACTTCTTTGNACTCCTTGTTGATGAATATAAATGTCGTGGGTTAAA---AACTGACAGCAGCTCACAAAGTCTNAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACACATATNTAGTTTCAGTATGCTATGTAA
gi|1 : ATAACA--GTAACATTCTT-------TGGTGTATGTTT----GTGTA---------TGTT---TGTGTTA-----TAGTTTCCTG---TT---TACCTGTTTTA-----CT---GT----TTCC--------GAC----TTCA-----TATAACTTTGATAA--A---ATCAC----C-------TTATTACACAGAAATGAAGAGTTGGCCGAAAATACTTGGGTCACATGTA--GATC----ATTAAGATTAA---TTAAAAATTAAC-A-------CGATA-TGAAATATTCCAGTCTTCTGATATTTCCTACTGATTATATCAGAGGTGTGACTATTA--AAATACAGTTTCCTGTCATTTTTTGAAATGTGACGCGTTATTTTTTCCTTCT---T------AGAAGAATGATTAA-CAT-GGAGACTGACTACTATATAATAT------ATCCATGTCCAGTTATA-----CATATGATAACAACATTGATATGTCCTAGTAAAGCATGCTCTGCAAC-AAAGTAGGGACTCTTAAATCGAGATATGAAATCGTGTTTCTGACTTTTCTGTT-ATTT-TGTTACTATTAC-TTTTTTCATATCATAA-TTTACGAGGATCAGTATATGTGTATTTGTCCAATTAATTGATTCAAACGGAGAATGAAATTGAAAGGTAGATCAAGCA--TTA---GG-T-AATATAAAACGAAAAGATCCGCATAAGTTCACTGTTAATTAAAACAG--------AAAAGTAAAACATGTTTCTGTTCA-------ATAT-TGAACAGGCAAAT---------TTTGTACTCCTC-TTGATGAATATAAATGTCATGTGTTAAA---AACTAACAGCAGCTCACAAAGTCTAAGCGAAC----TTGAAATGTGGACATCCGTGTGCAGTGGACACATATATAGTTTCAGTATGCGATGTAA
gi|10 : taaaatattataataatattatttagtaagtttgtaatgttatataaTTAT--TT----G-GTA---------ACTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAACGTTTT--------TAC----CTCA-----TGTTACTccttataacgattttactgttttaaagtagtctttactt
gi|10 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTT-TT-------TACCTCAT----------GTT---------ACTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAATTTTTT--------TAC----CTCA-----TGCAACTGTAATAA--A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAA-------ttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaattaa
gi|11 : acttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTAT--TT----G-GTA---------ACTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAACGTTTT--------TAC----CTCA-----TGTTACT
gi|11 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagaTATTACA--GTAACGTT-TT-------TACCTCAT----------GTT---------ACTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAATTTTTT--------TAC----CTCA-----TGCAACTGTAATAA--A---TTCAT----C-------TCGTTACACAGAAATGTAGAGTTGATCGGAAATACTTGGGGAATTTGTAGTTGTAGGTTATTAAGGTTAA---TTAttgttttgttgtatattacagtaatttttttacctcatgcaactgtaataaattcatctcgttacacagaaatgtagagttgatcggaaatacttggggaatttgtagttgtaggttattaaggttaatta
gi|12 : aacttatgctgctactagtacattgttatcaaattcattattatgaatatataaatatatttgatatgttgacatgtattatatccatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacaatgaattattacaaaatagattatttggtaactttgttttgttgtaTTCACGAGGATCAGTTTATGGGTATTTGTCCAAATA----ATCCAAAC---GAATGAAATTGAAATGTA----------------------G---------------ATCAGCATAAGGTAA----TAAA-------AAGGAAAAGAAAAGAAAAATACGTTTCTATTCA-------ATAT-TTTACAGGCGTATATTGACTTCTTTGCACTCCTTTTTGATGAATATAAATGCCATGTGTTAAA---AACTAACAGTACCTC---------------ACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAA
gi|13 : aaTAACTTTAGT-------TATATTAT--CG----G-ATGC--------ACTT---TGAT--G-----T-------TC---TG---TG------TTAA----CATTGGTAATATTTT--------TA--------A-----TG--AC-GTCATAC--A---AGCAT----GGATATGGTCATTATACAGCAGTGTAGAGTTGTACAAATATACTCGTTTCACTTATA--TGTA----ATTAAATGCAG---TTAA-----------------CGAAA-GAACATATCCTGGTccttaaaacgacttttatttttatgaagaattatttactt
gi|14 : tatCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAAtatataatttacgtt
gi|15 : GAAAAACTCGTGTAATCCGTT--TGTA----ATTAAATGCAA---TTTA-------CGG-------GGAAA-TAcnnnnnnnnnnnnn
gi|16 : cgtatggcaagaataaggttattttatagcagtttaaaaaactagagtAACTTTACGTTGATCAGAATATGAGTTTTTGTC-AATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGG-TTA---------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCA-------ATATAtatccagataagagaatctacattaaagagaatttatcaggattttttctaactt
gi|17 : aATATAAATGTCATGGGT-AAA---AACTGACAGCAGTTTACAAAGTCTTAGCAAA----ATTAAAATGTGGACATCTGTGGGCAGTGGACACATATCTAGTTTCAGTATGCTATGTAAgtatatatt
gi|18 : TTGATTGATTTGCACTCCTT-TT-ATG--TATAA---TTGAAGATTAAATAAAACCGACTACTGCTTACAAAGTATAAGCAAA-AA---TGAGCTGAGTACACCCGTGCACTGTGgattataactgttatcaagtattacttact
gi|2 : cataagTATTATAAAGTAACGTTTGTACAATCGTAGTTTAT--TT----G-GTA---------ATTT---TGTTTTG-----T-------TG---TA---TA------TTA-----CA---GTAACGATCT--------TAC----TTCA-----CGTTACTGTAATAA--A---ATCAC----C-------TTATTACACAGAAATGTACAGTTGATCGGAAATTATTGGGTTATCTGTA--GGTA----ATTAAGGTTAA---TTAA-------C-A-------CGAGA-TAAAACATCCCAGTCTGCTGACTTTTCCTACTGATTATATCAAAGGTGTGATTATAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACACGTTAATTATTCCTTCT---TTGTTAGA--AGAATGAGTAA-C-CTTGAAACTGACCACTATATAATATGATACAATCCGTGTCCAGTTATATCCAACATGTGATAACAACATTGTTTTGTTCTAGTAATGCATGCTCTACAACGGGAGAAGTGAATTTTCAATCAAGGTATGAAATTGTGTTTTTGACCTTTCTG-TAATTTTTGTTACTATTGCTTTTTTTCATATCGAAACTTTACGTTGATCAGAATATGAGTTTTTGT-CAATTA----ATTCAATC---GAATGAAATTGAAATGTA-AT--GGCAATTTCTTCGGTT-A---------------ATCAGCATAAGGTTACTGTTATT-------A--------AAAAATAAATTACGTTTCTATTCAATATAGTATATATTT-CAGGCGTATATTGACTTCTTTGAACTCCTTGTTGATAGATATAAATGTCGTGGGTTAAC---AACTGACAGCAGCTCACAAAGTCTAAGCAAACAAAATTGAAATGTGGACATCCGTGTGCAGTGGACATATATCTAGTTTCAGTATTCTATGTAA
gi|3 : ACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAA
gi|3 : aAG--A---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAATGCAA---TTTA-------CGG-------GGAAA-TAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaACAGCAGCTAACAAAGTCATAGCAAA----ATTGAAATGTGGACATACGTGTGCAGTGGACACACATATAGTTTCAGTATGATATGTAAtatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|4 : aAG--A---ATTAG----G-------TCATTTTACATCATTGAAGAGTTGAACGGAAATACTCGTGTAATCCATA--TGTA----ATTAAATGCAA---TTTA-------CGG-------GGAAA-TAacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaagaattaggtcattttacatcattgaagagttgaacggaaatactcgtgtaatccatatgtaattaaatgcaatttacggggaaatatatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|5 : aacagcagctaacaaagtcatagcaaaattgaaatgtggacatacgtgtgcagtggacacacatatagtttcagtatgatatgtaaacgtataacgatttttattgttattaagtattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaatcaccaagtttcttatattaatagttttagatatatagtttaaagtttttaaaatcataactctttttttatttgacataatagtttacaaataaatttctgaactgtaggccacggtgaaacttataaatttataatgcactaatcatatggcaattcgggcaaagttgtaaactgttatattcagatcaatggtaaaacatcagctttgttttaagaattcggagaactaagcactaagatgttctgttttaccattggtattatcatacttgaatcgcgtcatatacacaATTGTA--GTAAAGTTCTT-------TGGTGTAT--TT---------------------T---TGT---G-----T-------TA---TA----G------TTG-----CCT--GTA----TCT--------TAC----CTCA-----TATAACTTTATTAT--T---ATCTC----C-------TGAT---------------AATTACCTGGAAATACTTGGGTCACATGTA--TGTA----AATAAGGTAAA---TTAA-------C-AAATAACACGAAAATAAAACATCCCAGTCTGCTGATATTTCCTACTGATTATATCAGAGGTGTGACTGTAATTAAATACAGTTTCCTGTCATTTGTTGAAATTTGACACGTTAATTATTCCTGC--------------------------------AAACTGACCACTATATAATATGATACAAACCATGTCCAGTTATATCCAACATGTGATAACAACATTGTTATGTACTTGTAAACTGTGATGTGTAAT-AGAGTAGGGACTCTTAAGTCAAGGTATGAAA-GGTATTTTT----TTTTTA-T--TTTCTGTAA----------TTTTTATATTATAACTTTACGTGGATCCGGATATGGGTATTTGTTCAATTA----ATTC-------------AATAGAAATGTC-AT--AACA--TTCTA-GG-TAA---------------ATCAGCATATGGTCACTGTAAAT-------A--------GAAA-TGGA-TAGAATTATATTCA-------ATAT-TTTACAGGCGTTTATTGACTGCTTTGTACTCTTTGTTGAT-AACATtatccagattagatcatttacgttcaagggaatttatcagatttttttcaaactt
gi|6 : attattgataagtaatcttttttatacaatctttgattattttgtaactttgtttttttatataaACAAAATTGAAATGTGGATATCCGTATGCAGTGGACACATATTTAGTTTCAGTATGCTATGTAAggaatactttaataaggtaaca
gi|7 : actaacagtacctcATTACA--GTAACATTCTT-------TGGTGTAT--TTTTGTG-TTATAGTTTCCTATTTACCTGTTTTA-----C-------TA---TA---GC------TTA-----CCTC-ATATCACTTTAATAAAATCAC----CTTA-----TTACACAGAAATGA--AGAAATCACGTCTC-------TCA--ACGCAGAAATG---AGTTGGTCGGAAATACCTATATCACATGTA--CGCA----ATTAA--TTAACAATTAA-------C-A-------CGATA-TAAAACATCCCAATCTACTGATATTTCCTACTGATTATGTCAGAGGTGTGACTCTAATTAAATACAGTTTCCTGTCATTTATTGAAATGTGACGCGTTAATTATTCCTTCTTTGT------T--AGAATGAGTAACC-C-GGAAACTGACCACTATATAAAATGTCACAAACCATGTCCAGCTATATCCAACATCTGATTACACCATTGTTATGTTCTTGTAAACCATGCTCTGCccttaaaacgacttttatttttatgaagaattatttacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcactagttttgttatatcaatagttttagaaataaagttttaaaatcaaaattcgttttttatttgatataatagtttactaatgaatttctgaactgtatgccacgatgaaagttaaaaatatataatgcactaatcgtatggca
gi|8 : a-------TCATTTTACATCAATGAAGAGTTGAACGGAAATACTCGTGTAATTTGTA--TGTA----ATTAA
gi|9 : ccagtcactgggtttcttatattattatttttagatatatttaaagtttttaaattattattctttttttatttgacataatagtttacaaaggaatttatgaactgtaggccacgattaaacttataaatatataatgcacttatcataaagcatttctgtcaaagtagtgaaattcagaccaatggcatgaactcaaatttgttataagtatttggattaagcactaaggtgttcttttcaccattggtattattatacttgaacggtgtcatataaacaagaatacgtT----G-ACA---------GCTT---TGTTTTGAGGATT-------TGGACTAAGGTA------TTATGTGTCA---GCATTGTTTT--------TATTATACTAAAATGGTGTCA-TATAAACATGA---ATAAG----G-------TCATTTTACAGCAGTGTATAGTTGAACGGAAATACTCCTGTCACCTATA--TGCA----ATTAAATGCAC---TTAC-------C-G-------GGAAA-T---ATATCCCatgcaatttaaggggcaatatatcccgattagataatttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCGGATTACTGTATTCTATAGTTATGTTATCTGATGCACTCAGGTGTTATGTGTTAGCAATGGTTTTTATTATCAATGGTGCCATATAGACATTATACAGCAG
Unaligned ( gi|20 ): AGTGTCACCTGTATTCTATAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGTTAGCAATGGTATTATTATTAAATGGCGTCATATAGACATTATACAGCAG
Unaligned ( gi|21 ): TTATACTATAGTTATGTTATTTGATGCACTAAGGTGTTCTGTGTTCGCAATAGTATTATTATAAATGGTGTAAAATGACATTATACAGCAGTAGGG
Unaligned ( gi|22 ): TATTCTCTAGTTATGTTATCTGATGCACTAAGGTGTTCTGTGCTAGCAATGGTATTATTATAAATGGTGTCATATAGACATTATACAGCAG
Unaligned ( gi|23 ): TATTCTATAGTTATGTTATCTGATGCTCCAAAGTGTTCTGTGTAAGCAATGATATTATTATAATTGGCGTCATATAGACATTATACAGCAG