lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111 1111111 11111111 22222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 222 11 2222 1 55555555555555555555555555 888888888888888 000000000000000000000000000000000000000000000000000000000000000000000000 000000000000000000000000000000000000000000 1 111111 222222222 2222222222 11 1111 222222 1111 11111 1 4 3333333 1 1 22 1 222 1 1 1 11 1111 1 11 33 11 11 1 1 00000000 1 444444 1 22 1 111 22222 444444444 1111111 33333333 3333333 1 22222222222222222222222222222 1 1 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 77 4 88 333 88 1111 0 44444444444444444444444444 22 1 555555555555555 8 6 2 6 000000000000000000000000000000000000000000000000000000000000000000000000 8 8 111111111111111111111111111111111111111111 0 888 777777 6 555555555 0000000000 33 4444 444444 4444 22222 5 6 3 6 6 4 4 4 0 2 0000000 1 6 7 11 5 111 6 2 7 3 5 33 6 8888 7 7 6 6 88 99 88 88 6 9 5 8 6 7 88 7 3 77777777 5 3 2 222222 0 33 5 777 555 11111 5 777777777 3333333 22222222 4444444 4 2 7 8 66666666666666666666666666666 77 0 5 3 3 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 6 3 4
lowQualScore : .. . .. ... .. .... . .......................... .. . ............... . . . . ........................................................................ . . .......................................... . ... ...... . ......... .......... .. .... ...... .... ..... . . . . . . . . . . ....... . . . .. . ... . . . . . .. . .... . . . . .. .. .. .. . . . . . . .. . . ........ . . . ...... . .. . ... ... ..... . ......... ....... ........ ....... . . . . ............................. .. . . . . . ........................................................................................................................... . . . .
lowQualScore : 55 0 33 333 33 2222 0 88888888888888888888888888 22 4 222222222222222 8 0 5 0 000000000000000000000000000000000000000000000000000000000000000000000000 0 0 222222222222222222222222222222222222222222 8 555 333333 7 333333333 5555555555 88 2222 888888 2222 44444 0 0 0 0 0 0 0 0 0 5 0000000 5 0 0 00 0 000 0 5 0 3 0 00 7 3333 0 0 0 0 33 77 33 33 0 7 0 3 0 7 33 3 3 55555555 5 0 5 222222 0 88 0 444 888 66666 0 111111111 0000000 33333333 3333333 8 2 0 8 00000000000000000000000000000 00 0 0 2 2 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0
consensus : ACTACTAANATATAATAA--TAAA---TAATTAAAACTAACT--GTAAT----AAATAACTGAATAAATA-ATTAAAA--N--NAT-AA-TAAGCATGAACAANTAACTGAATAAATAATTAGAC-T---TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----ACTACTGTAATA-AA-TTA---AAA-------AAATAATTAAAACTAACTGTA------ATAAATAACTGAATAAATA-ATTAAAA-----ATA-AATA-A-------ATAA--GC------ATGAACACTACTGAA----TAA----TTA----GACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATNTCACAACCATTGCATCNGTCNAACCC-ACGCTAAGANATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAGCACATGCCGGATANACCGCAATGGCCTATTGATACGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTACCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAA--GTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGNTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAA-TACTTTANTTAAAAATAAAATGATTNTTGTTNTTGTTG---T-TT-TTAGTATCGTAGATGTTGCCTTAACTGTGTAACACGAATTTTAC-GGGAAAATCGGGTGTATTGAATTTTTATAGCAGGAGGTAAATACTTAATTTTAGAGGACCACAGGGAAGA---TTGGA-NATTGTTCCAACTGTG---------TTT-------AAATAAAGACTTAA-TTATTATTATTATTACTATA---ATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTT-GAATT-ATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATANTTTTCGATTNATGTCAGAAATNAGAAATGGAAACCCTAGA
Reference ( gi|1 ) : ACTA--AAAATATAATAA--TAAA---TAATTAAAACTAACT--GTAAT----AAATAACTGAATAAATA-ATTAAAA--A--AAT-AA-TAATTATGGACAAATAACTGAATAAATAATTAAACGTAAATATAGACTCTATAAATAACTTATATGTTTCTTCTCCAACAGCCAACACTCAAATGAACGCCCTACATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA-----ACTACTGTAATA-AA-TTAAAAAAA-------AAAAAATTAAACTTAACTGTG------ATAAATAACTGAGTAAACA-ATTAAAA-----ATA-AATA-A-------ATAA--GC------ATGAACACTACTGAA----TAA----TTA----GACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACTGCCAACACTCAAATAAATTCCCTACGTTACACAAGACACAAAGTGGTTTTGCGCACGATTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCCCACGCTAAGAGA-------CAAGCCTAGTATGTGTCTTCATACTGTCTGCCATTTTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCTGGATACACCACAATGGCCTATTGATATGTCAGAGTTAAAACCTTT-ACGTGACCCCAGTATGTGTAGCGTCTGACGGATATGAACACAATAGCCCATTCATCAGCCCAAAGTTAATCTCCATAATGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGACACGGAA--GTTAAACAATG--GTGT--ATTCAAGTGTCAAACTTAGCGACTGGACATCTTAACAATAGATTAATGGGTCCTTTGTTGTAAATAGTCATGATTGGACTATATAACTCAAGCAAAGTTAGTTATATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAA-TACTT--------AATAAAATGATTTTTGTTGTTGTT----T-TT-TTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGCATTTTTATAGCAAGAGGTAAATATTTAATTTTAGAGCAACACAGGGAAGA---TTGGA-GATAGTTCCAGCTGTG---------TTT-------AAATAAAGTCTTAA-TTATTATTATTATTACTGTT---GTCATTATTATTGTTATTAAAGATGAAATATGTTCTTTTTAGTATCATAAATGTTACCTTATCTGTGTAACATGAATTTTACGGAA--------------A--------------TCCTAAAACTGGAAGTTGAAAA-TAATGGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACTAAAAATATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAATATTTTTCAATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|2 : ATTA--AATAAATAATAA--TAAA---TAATTAAAAGTATTTTTGTAATTCATAAATAACTGAATAAATA-ATTAAAA--ATAAAT-AAATAAGCATG-ACCACTA-CTGAATAAATAATTAGACTT---TGTA----TTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAAGGAATTCCATACGTT
gi|6 : actactgtaaaaaaACTACTAAAATATAATAA--TAAA---TAATTAAAACTAACT--GTAAT----AAATAACTGAATAAATA-ATTAAAA--C--TTT-AA-T------GAACAAGTTACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATA-AA-TT-----------------AAAT-----------------------AATAACTAA-TAAATG-ATTAAAA-----CTA-ATTGTA-------ATAA--AT------A--------ACTGAA----TAA----ATA----AAacacaagacacaaagtgattttacgcacgacttttctatttttagatatagcatatcacaaccattgcatcagtttaatccacgctaagagattagtgtcaagtctagcatgtgtctccttactgtctgctcttgtattgacacgatacataatctctaagcggattaggcagcaaccggatacaccgcaattgcctattgatatgtcagagttaatacctttatgtgaccgcagtatgtctagggtataccggataggaacacaatagccaaaaggtaatctctttaacgtcaccagtatgtctagcgtttgtttatttaggcacggaagtgtatcaatgatgtattaaagtctcaaacttaacgactggacgtcttaacaatagattaatgggtcctttgttgtacattgtcatgattggactatttaactcgagcaaagttaggtattggtataactgtccacggtgtgaatattggagttttatagcaagaggtaaattattttaaaataaaatgttgttgttttttttgtagtttttagtatcgtagatgttgccttaattgtataacacgaattttattgggaaaattggatgtattgaatttttatggcaggaggtaaatatttaattttagaggaccacagggaatattggagttccagctgtgttttttctttaaacaagaacttaattattataattattactataatcattattgttattattaatgatgaaatatgttctttttagtatcataaatgttgccttaactgtgtaacacgaattttacggaaaattaatgggttcgatcctaaaaccggaagttgaaaataattgtttcgaagtagggcaagttatattttttgaaaaggtatgaccgattacattacgaaaaatatggtt
gi|7 : tTGTAATAAATTAAAACATAATTAAAACTAACT--GTAAT----AAATAACAGAAAAAAAATATTAAAAATA--AATAAA-TAAGCATGAAC-ACTAA-TGAATAATTAATTAGACtaaaacaaagtaaatgaactataa
gi|7 : aataaattaaaaataaaaaactgaatcaataattaaaactataatgaacatataactgaataaataattaaatataaactctataaataacttaaatgtttcttctccaacggccaacactcaaatgaacgccctacgtttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactacAAT----AAAAAACTGAATCAATA-ATTAAAA--C--TAT-AA-T------GAACATATAACTGAATAAATAATTAAA------TATAAACTCTATAAATAACTTAAATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----ACTACTGTAATA-AA-TT----AAA-------ACATAATTAAAACTAACTGTA------ATAAATAACAGAAAAAAAATATTAAAA-----ATA-AATA-A-------ATAA--GC------ATGAACACTAATGAATAATTAA----TTA----GACTCTGTATTtctgtatt
gi|4 : aataaattaaaA-TAAGCATGAACA--CTACTGAATAATTAATTAGAC-TCTGTAT------TATAAATAACTTACATGTTTTTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTT
gi|2 : tactgtaataaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----ACTACTGTAAAA-AAATTAAATAAATAATAATAAATAATTAAAAGTATTTTTGTAATTCATAAATAACTGAATAAATA-ATTAAAA-----ATA-AATA-A-------ATAA--GC------ATGACCACTACTGAA----TAAATAATTA----GACTTTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAAGGAATTCCATACGTTACACAAGACACAAAGTGATTTTACGCACGACTTTTCTATTTTTAGATATAGCATATCACAACCATTGCATCAGTTTAATCC-ACGCTAAGAGATTAGTGTCAAGTCTAGCATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAGCA---ACCGGATACACCGCAATTGCCTATTGATATGTCAGAGTTAATACCTTT-ATGTGACCGCAGTATGTCTAGGGTATACCGGATAGGAACACAATAGCC--------A----AAAGGTAATCTCTTTAACGTCACCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAA--GTGTATCAATG--ATGT--ATTAAAGTCTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATTGTCATGATTGGACTATTTAACTCGAGCAAAGTTAGGTA---TTGGTATAAC--TGTCCACGGTGTGAATATTGGAGTTTTATAGCAAGAGGTAAATTATTTTAA-----AATAAAATG-TTGTTGTTTTTTTTGTAGT-TT-TTAGTATCGTAGATGTTGCCTTAATTGTATAACACGAATTTTATTGGGAAAATTGGATGTATTGAATTTTTATGGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAATA---TTGG-----AGTTCCAGCTGTGTTTTTTC--TTT-------AAACAAGAACTTAA-TTATTATAATTATTACTATA---ATCATTATTGTTATTATTAATGATGAAATATGTTCTTTTTAGTATCATAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTCGA--------------TCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATAT-TTTTTGAAAAGGTATGACCGATTACATTACGAAAAATATGGTTacacaagacacaaagtaattttgcgcacgacttttctatttttagatatagcatttcacaaccattgcatctgtcaaacccacgctaagatattagtgtcaaacctagaatgtgtctccttactgtctgctcttgtattggcacgatacataatccctaagcggattaggcaacacatgccggatagaccacaatggcctattgatatgtcagagttaatacctttacgtgaccccagtatgtctagcgtctaatggatatgaacacaatagcccattcatcagccaaaaggtaatctccttaacgtcgccagtatgtctagcgtttgtttatttaggcacggaagtgtaataatggtgtgtattcaagtgtcaaacttaacgactggacgtcttaacaatagattaatgggtcctttgttgtacatagtcatgattggactaaataactcgagcaaagttagttgtatttggtatatctgtgtccacggtgtgtgtattggagttttatagcaagaggtaaatact
gi|6 : -----ACTACTAAAATATAA-T-----AAT-------AAATAATTAAAACTAACTGTA------ATAAATAACTGAATAAATA-ATTAAAA-----CTTTAATG-A-------ACAA--GTTACTGAATAAATA--ATTAAA----TA------TA----GACTCT-----ATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTT
gi|4 : tTACTGTAATA-AA-TTANNNNNN-------NNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNN-NNNNNNN-----NNN-NNNN-NNNNNNNNATAA--GC------ATGAACACTACTGAA----TAA----TTAATTAGACTCTGTATTATAAATAACTTACATGTTTTTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTAATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCTGTCAAACCC-ACGCTAAGATATTAGTGTCAAACCTAGAATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAACACATGCCGGATAGACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTAATGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAA--GTGTAATAATGGTGTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAA-TACTtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactactgtaataaattaaataataactaataaatgattaaaactaattgtaataaataactgaataaataaataaaacaaagtaaatgaactataa
gi|7 : -------AATAAATTAAA---------A------ATAAAAAACTGAATCAATA-ATTAAAACTATAATG-AACA-T-------ATAACTGA------ATAAATA--ATTAAA----TA------TA----AACTCT-----ATAAATAACTTAAATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTT
gi|9 : ACCACAAGGGCCTATTGAAACGCCATAGTTAATACTTTTTACGTGATCCCCGTATGGCTAGCGTCTACCGGACATGAACACAATAtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactactgtaataaattaaaacataattaaaactaactgtaataaataacagaaaaaaaatattaaaaataaataaataagcatgaacactaatgaataattaattagactctgtatt
gi|3 : ATAGCCCATTCATCAGCCAAAAGTTAATCTCCTTAACGTCGCAAATATGTCTAGCGTTTGTTTATTTAGGCACGGGATAGT--AACAATG--GTGTGTATTCAAGTGTCAAACTTAACGACTGAACTTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGATGTATTTGGTATATCTGTGTTCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAA-TACTTTATTTAAAAATAAAATGATTTTTGTTGTGGTTG---TATT-TTAGTATCGTAGATGTTGCCTTAACTGTATAACAAGAATTTTATGGGGGAAATCGGGTGTATTGAATTTTTATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNN-NNNNNNNNNNNNNNNN---------NNN-------NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNTTAATCATAATAATTACTATTAAAGATGAAATCTGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACAAGAATTTTACGGAAAATTAATGGGTTAGA--------------TCCTAAAACTGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATAACTGAGTACATTACGAAAAATATCGTTTCa
gi|5 : TGTTC---T-TT-TTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTAC--GGAAAATcgccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaataattttcgattgatgttagaaataaaaaatggaaaccttaga
gi|8 : tcattattattattattaaagatgaaataTGTT----T-TTCTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTAC--GGAAAATtaatgggttcgatcctaaaaccggaagttaaaaaataattgtttcgaaatagggcaagttatatatttttgaaaaagtatgaccgagtacattacgaaaaatatggttccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaaatatttttcgatttatgtcagaaattagaaatgaaaactcta
gi|4 : cttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgaaataTGTATTGGAGTTTTATAGCAAGAGGTAAATACTttatgggttcgatcctaaaagttaaaaataattgtttcgaaatggcaagttatatatttttgaaaaggtatgactgagtacattacgacaaatatggt
gi|16 : tactgtaataaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagcatgaacactactgaataattaattagactctgtattataaataacttacatgttttttctccaacggccaacactcaaatgaattccctacgttacacaagacacaaagtaattttgcgcacgacttttctatttttagatatagcatttcacaaccattgcatctgtcaaacccacgctaagatattagtgtcaaacctagaatgtgtctccttactgtctgctcttgtattggcacgatacataatccctaagcggattaggcaacacatgccggatagaccacaatggcctattgatatgtcagagttaatacctttacgtgaccccagtatgtctagcgtctaatggatatgaacacaatagcccattcatcagccaaaaggtaatctccttaacgtcgccagtatgtctagcgtttgtttatttaggcacggaagtgtaataatggtgtgtattcaagtgtcaaacttaacgactggacgtcttaacaatagattaatgggtcctttgttgtacatagtcatgattggactaaataactcgagcaaagttagttgtatttggtatatctgtgtccacggtgtgTAAAGGACCACAGGGAAGA---TTGGACAAT-GTTCTAACTGTG---------TTT-------
gi|15 : tcaTAAAGGACCTCAGGGAAGA---TTGGACAAT-GTTCTAACTGTG---------TTT-------cct
gi|10 : aAGAGGACCACAGGGAAGA---TTGGA-GATTGTTCCAAATGTGTTTGCTCC-TTT-------AAATAAA----TAATTTATTATTGTTATcctcttt
gi|17 : CACAGGGAAGA---TTGGA-AATTGTTCCAACTGTG---------Taataa
gi|20 : CACAGGGAAGA---TTGGA-CATTGTTCCAACTATG---------Tatcctct
gi|12 : CACAGGGGAGA---CTAGA-CATTGTTCCAACTCTGTTTCCTA--TTT-------AAATAAAAAC---A-TTATTATT
gi|14 : CACAGAGAAGAGTGTTGGA-CACTGTTCTAACTGTG---------TTT-------
gi|11 : taagacCAGGAAAGA---TTGGA-CATTGTTCCAAAGGTGTTTTTCCTCTTT-------AAATAAAG----A---TATTATTATTtctctttcaa
gi|18 : gacccGAAGA---TTGGA-GACTGTTCCAACTGTG---------TTT-------
gi|13 : AGA---TTGGA-CATTGTTCCATGTGTG---------TTTCCTCTTTGAATAAAGACTTTA-TTATTATTATTcctctttaaa
gi|8 : CTTAA-TANNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNAAGATGAAATATGTTTTTCTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAA--------------AATTTATGGGTTCGATCCTAAAA------GTTAAAAA-TAATTGTTTCGAAAT--GGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACGACAAATATGGT
gi|5 : TCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAA--------------AATTAATGGGTTCGATCCTAAAACCGGAAGTTAAAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAAGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATATTTTTCGATTTATGTCAGAAATTAGAAATGAAAACTCTA
gi|3 : AATAATTTTCGATTGATGTTAGAAATAAAAAATGGAAACCTTAGA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TTTTAAATATTCATTTTTGTTAGCATGAATATAAT
Unaligned ( gi|21 ): GCAGAGGGGTAAATGTCCATATATCACATAA
Alignments
lowQualScore : 11111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 777777 666666 99999999999999999999999999999999999999999999999999999999999999999999999 33333333333 111111 11 22222222 1111 3333333333 2222 333333333 22 1 1 11 11 1 111111 333333 444 33333333333333333333 111 66666666666666666666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 88 1 22 111111 1 6 777777 3 99999999999999999999999999999999999999999999999999999999999999999999999 8 0 88888888888 888888 11 99999999 7777 1 8 5555555555 1111 333333333 11 1 1 1 3 1 7 1 0 0 0 6 1 2 2 0 2 2 2 33 33 0 4 0 3 3 3 777777 7 1 1 444444 6 666 0 4 555 4 33333333333333333333 8888 1 1 0 444 0 22222222222222222222 1 8 0 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 1 7 1 1 0 0 0
lowQualScore : .. . .. ...... . . ...... . ....................................................................... . . ........... ...... .. ........ .... . . .......... .... ......... .. . . . . . . . . . . . . . . . . . . .. .. . . . . . . ...... . . . ...... . ... . . ... . .................... .... . . . ... . .................... . . . . ....................................................................................................................... . . . . . . . .
lowQualScore : 00 0 00 777777 0 0 000000 7 33333333333333333333333333333333333333333333333333333333333333333333333 0 8 22222222222 000000 00 00000000 0000 2 0 0000000000 2222 555555555 00 0 0 0 3 0 3 0 7 7 7 7 0 0 0 0 5 5 5 88 88 2 0 8 2 2 2 777777 3 0 0 333333 0 000 7 3 444 0 11111111111111111111 0000 5 6 2 000 8 22222222222222222222 4 0 8 8 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 0 3 0 0 7 7 7
consensus : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTATTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTA-TGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTT-----ATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
Reference ( family-761 ) : ACTACTAANATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAANNATAATAAGCATGAACAANTAACTGAATAAATAATTAGAC-T---TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAATA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATNTCACAACCATTGCATCNGTCNAACCC-ACGCTAAGANATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAGCACATGCCGGATANACCGCAATGGCCTATTGATACGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTACCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGNTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTANTTAAAAATAAAATGATTNTTGTTNTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTGTAACACGAATTTTA-C-GGGAAAATCGGGTGTATTGAATTTTTATAGCAGGAGGTAAATACTTAATTTTAGAGGACCACAGGGAAGA---TTGGANATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTGAATTATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATANTTTTCGATTNATGTCAGAAATNAGAAATGGAAACCCTAGA
gi|1 : ACTA--AAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAAAAATAATAATTATGGACAAATAACTGAATAAATAATTAAACGTAAATATAGACTCTATAAATAACTTATATGTTTCTTCTCCAACAGCCAACACTCAAATGAACGCCCTACATTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTACTGTAATAAA-TTAAA-A---------AAAAAAAAAT--TAAA--CTTAA--------CTGTGAT----AAATAACTGAGTAAACA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACTGCCAACACTCAAATAAATTCCCTACGTTACACAAGACACAAAGTGGTTTTGCGCACGATTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCCCACGCTAAGAGA-------CAAGCCTAGTATGTGTCTTCATACTGTCTGCCATTTTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCTGGATACACCACAATGGCCTATTGATATGTCAGAGTTAAAACCTTT-ACGTGACCCCAGTATGTGTAGCGTCTGACGGATATGAACACAATAGCCCATTCATCAGCCCAAAGTTAATCTCCATAATGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGACACGGAAGTTAAACAATG--GTGT--ATTCAAGTGTCAAACTTAGCGACTGGACATCTTAACAATAGATTAATGGGTCCTTTGTTGTAAATAGTCATGATTGGACTATATAACTCAAGCAAAGTTAGTTATATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTT--------AATAAAATGATTTTTGTTGTTGTT----T-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTA-TGGGGAAAATCGGATGTATTGCATTTTTATAGCAAGAGGTAAATATTTAATTTTAGAGCAACACAGGGAAGA---TTGGAGATAGTTCCAGCTGTG--------TTT---------AAATAAAGTCTTAATTATTATTATTATTACTG---TTGTCATTATTATTGTTATTAAAGATGAAATATGTTCTTTTTAGTATCATAAATGTTACCTTATCTGTGTAACATGAATTTTACGGAA--------------------------ATCCTAAAACTGGAAGTTGAAAA-TAATGGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACTAAAAATATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAATATTTTTCAATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|10 : AGAGGACCACAGGGAAGA---TTGGAGATTGTTCCAAATGTGTTTGCTCCTTT---------AAATAAA----TAAT--TTATTATTGTTATAA---TAA
gi|11 : GACCCCAGGAAAGA---TTGGACATTGTTCCAAAGGTG--------TTTTTCCTCTTTAAATAAAGA------TATTATTATT
gi|12 : CACAGGGGAGA---CTAGACATTGTTCCAACTCTGTTTCCTA-TTT---------AAATAAAAAC---ATTATTATT
gi|13 : AGA---TTGGACATTGTTCCATGTGTG--------TTTCCTCTTT--GAATAAAGACTTTATTATTATTATT
gi|14 : AAGACCACAGAGAAGAGTGTTGGACACTGTTCTAACTGTG--------TTT---------
gi|15 : tTAAAGGACCTCAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------tctctttcaa
gi|16 : aTAAAGGACCACAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------cctcttt
gi|17 : tcaCACAGGGAAGA---TTGGAAATTGTTCCAACTGTG--------Tcct
gi|18 : GAAGA---TTGGAGACTGTTCCAACTGTG--------TTT---------atcctct
gi|2 : ACTACTGTAAAAAAATTAAA-T---------AAATAA---TAATAAATAATTAAAAGTATTTTTGTAATTCATAAATAACTGAATAAATA-ATTAAAAATAAATAA----------ATAAGCATGACCACTACTGAA----TAAATAAT----TAGACTTTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAAGGAATTCCATACGTTACACAAGACACAAAGTGATTTTACGCACGACTTTTCTATTTTTAGATATAGCATATCACAACCATTGCATCAGTTTAATCC-ACGCTAAGAGATTAGTGTCAAGTCTAGCATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAGCA---ACCGGATACACCGCAATTGCCTATTGATATGTCAGAGTTAATACCTTT-ATGTGACCGCAGTATGTCTAGGGTATACCGGATAGGAACACAATAGCC------------AAAAGGTAATCTCTTTAACGTCACCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTATCAATG--ATGT--ATTAAAGTCTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATTGTCATGATTGGACTATTTAACTCGAGCAAAGTTAG--GTA-TTGGTATAAC--TGTCCACGGTGTGAATATTGGAGTTTTATAGCAAGAGGTAAA----TTATTTTAAAATAAAATG-TTGTTGTTTTTTTTGTAGT-TTTTAGTATCGTAGATGTTGCCTTAATTGTATAACACGAATTTTATT-GGGAAAATTGGATGTATTGAATTTTTATGGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAATA---TTGGA----GTTCCAGCTGTGTTTTTTC-TTT---------AAACAAGAACTTAATTATTATAATTATTACTA---TAATCATTATTGTTATTATTAATGATGAAATATGTTCTTTTTAGTATCATAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTA------------ATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATAT-TTTTTGAAAAGGTATGACCGATTACATTACGAAAAATATGGTTcctctttaaa
gi|20 : CACAGGGAAGA---TTGGACATTGTTCCAACTATG--------T
gi|3 : ATAGCCCATTCATCAGCCAAAAGTTAATCTCCTTAACGTCGCAAATATGTCTAGCGTTTGTTTATTTAGGCACGGGATAGTAACAATG--GTGTGTATTCAAGTGTCAAACTTAACGACTGAACTTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGATGTATTTGGTATATCTGTGTTCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTATTTAAAAATAAAATGATTTTTGTTGTGGTT---GTATTTTAGTATCGTAGATGTTGCCTTAACTGTATAACAAGAATTTTA-TGGGGGAAATCGGGTGTATTGAATTTTTATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN--------NNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCATAATAATTACTATTAAAGATGAAATCTGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACAAGAATTTTACGGAAAATTAATGGGTTA------------GATCCTAAAACTGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATAACTGAGTACATTACGAAAAATATCGTTTC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATAA----TTTT-CGATTGATGTTAGAAATAAAAAATGGAAACCTTAGA
gi|4 : TACTGTAATAAA-TTANN-N---------NNNNNN---N--NNNN--NNNNN--------NNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNATAAGCATGAACACTACTGAA----TAA----TTAATTAGACTCTGTATTATAAATAACTTACATGTTTTTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTAATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCTGTCAAACCC-ACGCTAAGATATTAGTGTCAAACCTAGAATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAACACATGCCGGATAGACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTAATGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAATAATGGTGTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACT
gi|5 : TCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTT------------CGATCCTAAAACCGGAAGTTAAAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAAGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATATTTTTCGATTTATGTCAGAAATTAGAAATGAAAACTCTA
gi|6 : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTTTAAT------GAACAAGTTACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAATAATAACTAATAAATGA---T--TAAA--ACTAA--------TTGTAAT----AAATAACTGAATAAATA-AATAAAACAAAGTAA----------ATGAAC
gi|7 : tAATAAAAAACTGAATCAATAATTAAAACTATAAT------GAACATATAACTGAATAAATAATTAAA------TATAAACTCTATAAATAACTTAAATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TT-AA-A---------ACATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACAGAAAAAAAATATTAAAAATAAATAA----------ATAAGCATGAACACTAATGAATAATTAA----T----TAGACTCTGTATTtataa
gi|8 : aataaattaaaCTTAATANNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNAAGATGAAATATGTTTTTCTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATT------------TATGGGTTCGATCCTAAAA------GTTAAAAA-TAATTGTTTCGAAAT--GGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACGACAAATATGGT
gi|9 : ACCACAAGGGCCTATTGAAACGCCATAGTTAATACTTTTTACGTGATCCCCGTATGGCTAGCGTCTACCGGACATGAACACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTTAAATATTCATTTTTGTTAGCATGAATATAAT
Unaligned ( gi|21 ): GCAGAGGGGTAAATGTCCATATATCACATAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 333333 99999999999999999999999999999999999999999999999999999999999999999999999 33333333333 111111 11 22222222 1111 3333333333 2222 333333333 1 1 11 11 3333333 333333 33333333333333333333 111 8888888888888888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 88 888888 888888 1 99999999999999999999999999999999999999999999999999999999999999999999999 8 0 88888888888 888888 11 99999999 7777 1 8 5555555555 1111 333333333 3 7 1 6 0 1 2 1 33 33 0 1 9 3 3 3 0000000 7 444444 555 2 33333333333333333333 8888 1 1 0 444 0 0000000000000000 0 1 8 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7
lowQualScore : .. ...... ...... . ....................................................................... . . ........... ...... .. ........ .... . . .......... .... ......... . . . . . . . . .. .. . . . . . . ....... . ...... ... . .................... .... . . . ... . ................ . . . . . .................................................................................................................. .
lowQualScore : 00 333333 333333 0 33333333333333333333333333333333333333333333333333333333333333333333333 0 8 22222222222 000000 00 00000000 0000 0 0 0000000000 2222 555555555 3 3 0 7 0 0 5 0 88 88 2 0 8 2 2 2 0000000 3 333333 444 4 11111111111111111111 0000 5 6 2 000 8 0000000000000000 8 4 0 8 8 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3
consensus : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
Reference ( family-761 ) : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|1 : ACTA--AAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAAAAATAATAATTATGGACAAATAACTGAATAAATAATTAAACGTAAATATAGACTCTATAAATAACTTATATGTTTCTTCTCCAACAGCCAACACTCAAATGAACGCCCTACATTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTACTGTAATAAA-TTAAA-A---------AAAAAAAAAT--TAAA--CTTAA--------CTGTGAT----AAATAACTGAGTAAACA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACTGCCAACACTCAAATAAATTCCCTACGTTACACAAGACACAAAGTGGTTTTGCGCACGATTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCCCACGCTAAGAGA-------CAAGCCTAGTATGTGTCTTCATACTGTCTGCCATTTTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCTGGATACACCACAATGGCCTATTGATATGTCAGAGTTAAAACCTTT-ACGTGACCCCAGTATGTGTAGCGTCTGACGGATATGAACACAATAGCCCATTCATCAGCCCAAAGTTAATCTCCATAATGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGACACGGAAGTTAAACAATG--GTGT--ATTCAAGTGTCAAACTTAGCGACTGGACATCTTAACAATAGATTAATGGGTCCTTTGTTGTAAATAGTCATGATTGGACTATATAACTCAAGCAAAGTTAGTTATATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTT---------AATAAAATGATTTTTGTTGTTGTT----T-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGCATTTTTATAGCAAGAGGTAAATATTTAATTTTAGAGCAACACAGGGAAGA---TTGGAGATAGTTCCAGCTGTG--------TTT---------AAATAAAGTCTTAATTATTATTATTATTACTG---TTGTCATTATTATTGTTATTAAAGATGAAATATGTTCTTTTTAGTATCATAAATGTTACCTTATCTGTGTAACATGAATTTTACGGAA---------------------ATCCTAAAACTGGAAGTTGAAAA-TAATGGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACTAAAAATATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAATATTTTTCAATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|10 : AGAGGACCACAGGGAAGA---TTGGAGATTGTTCCAAATGTGTTTGCTCCTTT---------AAATAAA----TAAT--TTATTATTGTTATAA---TAA
gi|11 : GACCCCAGGAAAGA---TTGGACATTGTTCCAAAGGTG--------TTTTTCCTCTTTAAATAAAGA------TATTATTATT
gi|12 : CACAGGGGAGA---CTAGACATTGTTCCAACTCTGTTTCCTA-TTT---------AAATAAAAAC---ATTATTATT
gi|13 : AGA---TTGGACATTGTTCCATGTGTG--------TTTCCTCTTT--GAATAAAGACTTTATTATTATTATT
gi|14 : AAGACCACAGAGAAGAGTGTTGGACACTGTTCTAACTGTG--------TTT---------
gi|15 : tTAAAGGACCTCAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------tctctttcaa
gi|16 : aTAAAGGACCACAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------cctcttt
gi|17 : tcaCACAGGGAAGA---TTGGAAATTGTTCCAACTGTG--------Tcct
gi|18 : GAAGA---TTGGAGACTGTTCCAACTGTG--------TTT---------atcctct
gi|2 : ACTACTGTAAAAAAATTAAA-T---------AAATAA---TAATAAATAATTAAAAGTATTTTTGTAATTCATAAATAACTGAATAAATA-ATTAAAAATAAATAA----------ATAAGCATGACCACTACTGAA----TAAATAAT----TAGACTTTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAAGGAATTCCATACGTTACACAAGACACAAAGTGATTTTACGCACGACTTTTCTATTTTTAGATATAGCATATCACAACCATTGCATCAGTTTAATCC-ACGCTAAGAGATTAGTGTCAAGTCTAGCATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAGCA---ACCGGATACACCGCAATTGCCTATTGATATGTCAGAGTTAATACCTTT-ATGTGACCGCAGTATGTCTAGGGTATACCGGATAGGAACACAATAGCC------------AAAAGGTAATCTCTTTAACGTCACCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTATCAATG--ATGT--ATTAAAGTCTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATTGTCATGATTGGACTATTTAACTCGAGCAAAGTTAG--GTA-TTGGTATAAC--TGTCCACGGTGTGAATATTGGAGTTTTATAGCAAGAGGTAAA----TTATTTT-AAAATAAAATG-TTGTTGTTTTTTTTGTAGT-TTTTAGTATCGTAGATGTTGCCTTAATTGTATAACACGAATTTTATTGGGAAAATTGGATGTATTGAATTTTTATGGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAATA---TTGGA----GTTCCAGCTGTGTTTTTTC-TTT---------AAACAAGAACTTAATTATTATAATTATTACTA---TAATCATTATTGTTATTATTAATGATGAAATATGTTCTTTTTAGTATCATAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTA-------ATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATAT-TTTTTGAAAAGGTATGACCGATTACATTACGAAAAATATGGTTcctctttaaa
gi|20 : CACAGGGAAGA---TTGGACATTGTTCCAACTATG--------T
gi|3 : ATAGCCCATTCATCAGCCAAAAGTTAATCTCCTTAACGTCGCAAATATGTCTAGCGTTTGTTTATTTAGGCACGGGATAGTAACAATG--GTGTGTATTCAAGTGTCAAACTTAACGACTGAACTTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGATGTATTTGGTATATCTGTGTTCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTTAAAAATAAAATGATTTTTGTTGTGGTT---GTATTTTAGTATCGTAGATGTTGCCTTAACTGTATAACAAGAATTTTATGGGGGAAATCGGGTGTATTGAATTTTTATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN--------NNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCATAATAATTACTATTAAAGATGAAATCTGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACAAGAATTTTACGGAAAATTAATGGGTTA-------GATCCTAAAACTGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATAACTGAGTACATTACGAAAAATATCGTTTC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATAA-----TTTTCGATTGATGTTAGAAATAAAAAATGGAAACCTTAGA
gi|4 : TACTGTAATAAA-TTANN-N---------NNNNNN---N--NNNN--NNNNN--------NNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNATAAGCATGAACACTACTGAA----TAA----TTAATTAGACTCTGTATTATAAATAACTTACATGTTTTTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTAATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCTGTCAAACCC-ACGCTAAGATATTAGTGTCAAACCTAGAATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAACACATGCCGGATAGACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTAATGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAATAATGGTGTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACT
gi|5 : TCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTT-------CGATCCTAAAACCGGAAGTTAAAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAAGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATATTTTTCGATTTATGTCAGAAATTAGAAATGAAAACTCTA
gi|6 : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTTTAAT------GAACAAGTTACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAATAATAACTAATAAATGA---T--TAAA--ACTAA--------TTGTAAT----AAATAACTGAATAAATA-AATAAAACAAAGTAA----------ATGAAC
gi|7 : tAATAAAAAACTGAATCAATAATTAAAACTATAAT------GAACATATAACTGAATAAATAATTAAA------TATAAACTCTATAAATAACTTAAATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TT-AA-A---------ACATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACAGAAAAAAAATATTAAAAATAAATAA----------ATAAGCATGAACACTAATGAATAATTAA----T----TAGACTCTGTATTtataa
gi|8 : aataaattaaaCTTAATANNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNAAGATGAAATATGTTTTTCTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAAT-------TTATGGGTTCGATCCTAA------AAGTTAAAAA-TAATTGTTTCGAAAT--GGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACGACAAATATGGT
gi|9 : ACCACAAGGGCCTATTGAAACGCCATAGTTAATACTTTTTACGTGATCCCCGTATGGCTAGCGTCTACCGGACATGAACACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTTAAATATTCATTTTTGTTAGCATGAATATAAT
Unaligned ( gi|21 ): GCAGAGGGGTAAATGTCCATATATCACATAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 333333 99999999999999999999999999999999999999999999999999999999999999999999999 33333333333 111111 11 22222222 1111 3333333333 2222 333333333 1 1 11 11 3333333 333333 33333333333333333333 111 8888888888888888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 88 888888 888888 1 99999999999999999999999999999999999999999999999999999999999999999999999 8 0 88888888888 888888 11 99999999 7777 1 8 5555555555 1111 333333333 3 7 1 6 0 1 2 1 33 33 0 1 9 3 3 3 0000000 7 444444 555 2 33333333333333333333 8888 1 1 0 444 0 0000000000000000 0 1 8 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7
lowQualScore : .. ...... ...... . ....................................................................... . . ........... ...... .. ........ .... . . .......... .... ......... . . . . . . . . .. .. . . . . . . ....... . ...... ... . .................... .... . . . ... . ................ . . . . . .................................................................................................................. .
lowQualScore : 00 333333 333333 0 33333333333333333333333333333333333333333333333333333333333333333333333 0 8 22222222222 000000 00 00000000 0000 0 0 0000000000 2222 555555555 3 3 0 7 0 0 5 0 88 88 2 0 8 2 2 2 0000000 3 333333 444 4 11111111111111111111 0000 5 6 2 000 8 0000000000000000 8 4 0 8 8 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3
consensus : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
Reference ( family-761 ) : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|1 : ACTA--AAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAAAAATAATAATTATGGACAAATAACTGAATAAATAATTAAACGTAAATATAGACTCTATAAATAACTTATATGTTTCTTCTCCAACAGCCAACACTCAAATGAACGCCCTACATTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTACTGTAATAAA-TTAAA-A---------AAAAAAAAAT--TAAA--CTTAA--------CTGTGAT----AAATAACTGAGTAAACA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACTGCCAACACTCAAATAAATTCCCTACGTTACACAAGACACAAAGTGGTTTTGCGCACGATTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCCCACGCTAAGAGA-------CAAGCCTAGTATGTGTCTTCATACTGTCTGCCATTTTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCTGGATACACCACAATGGCCTATTGATATGTCAGAGTTAAAACCTTT-ACGTGACCCCAGTATGTGTAGCGTCTGACGGATATGAACACAATAGCCCATTCATCAGCCCAAAGTTAATCTCCATAATGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGACACGGAAGTTAAACAATG--GTGT--ATTCAAGTGTCAAACTTAGCGACTGGACATCTTAACAATAGATTAATGGGTCCTTTGTTGTAAATAGTCATGATTGGACTATATAACTCAAGCAAAGTTAGTTATATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTT---------AATAAAATGATTTTTGTTGTTGTT----T-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGCATTTTTATAGCAAGAGGTAAATATTTAATTTTAGAGCAACACAGGGAAGA---TTGGAGATAGTTCCAGCTGTG--------TTT---------AAATAAAGTCTTAATTATTATTATTATTACTG---TTGTCATTATTATTGTTATTAAAGATGAAATATGTTCTTTTTAGTATCATAAATGTTACCTTATCTGTGTAACATGAATTTTACGGAA---------------------ATCCTAAAACTGGAAGTTGAAAA-TAATGGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACTAAAAATATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAATATTTTTCAATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|10 : AGAGGACCACAGGGAAGA---TTGGAGATTGTTCCAAATGTGTTTGCTCCTTT---------AAATAAA----TAAT--TTATTATTGTTATAA---TAA
gi|11 : GACCCCAGGAAAGA---TTGGACATTGTTCCAAAGGTG--------TTTTTCCTCTTTAAATAAAGA------TATTATTATT
gi|12 : CACAGGGGAGA---CTAGACATTGTTCCAACTCTGTTTCCTA-TTT---------AAATAAAAAC---ATTATTATT
gi|13 : AGA---TTGGACATTGTTCCATGTGTG--------TTTCCTCTTT--GAATAAAGACTTTATTATTATTATT
gi|14 : AAGACCACAGAGAAGAGTGTTGGACACTGTTCTAACTGTG--------TTT---------
gi|15 : tTAAAGGACCTCAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------tctctttcaa
gi|16 : aTAAAGGACCACAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------cctcttt
gi|17 : tcaCACAGGGAAGA---TTGGAAATTGTTCCAACTGTG--------Tcct
gi|18 : GAAGA---TTGGAGACTGTTCCAACTGTG--------TTT---------atcctct
gi|2 : ACTACTGTAAAAAAATTAAA-T---------AAATAA---TAATAAATAATTAAAAGTATTTTTGTAATTCATAAATAACTGAATAAATA-ATTAAAAATAAATAA----------ATAAGCATGACCACTACTGAA----TAAATAAT----TAGACTTTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAAGGAATTCCATACGTTACACAAGACACAAAGTGATTTTACGCACGACTTTTCTATTTTTAGATATAGCATATCACAACCATTGCATCAGTTTAATCC-ACGCTAAGAGATTAGTGTCAAGTCTAGCATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAGCA---ACCGGATACACCGCAATTGCCTATTGATATGTCAGAGTTAATACCTTT-ATGTGACCGCAGTATGTCTAGGGTATACCGGATAGGAACACAATAGCC------------AAAAGGTAATCTCTTTAACGTCACCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTATCAATG--ATGT--ATTAAAGTCTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATTGTCATGATTGGACTATTTAACTCGAGCAAAGTTAG--GTA-TTGGTATAAC--TGTCCACGGTGTGAATATTGGAGTTTTATAGCAAGAGGTAAA----TTATTTT-AAAATAAAATG-TTGTTGTTTTTTTTGTAGT-TTTTAGTATCGTAGATGTTGCCTTAATTGTATAACACGAATTTTATTGGGAAAATTGGATGTATTGAATTTTTATGGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAATA---TTGGA----GTTCCAGCTGTGTTTTTTC-TTT---------AAACAAGAACTTAATTATTATAATTATTACTA---TAATCATTATTGTTATTATTAATGATGAAATATGTTCTTTTTAGTATCATAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTA-------ATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATAT-TTTTTGAAAAGGTATGACCGATTACATTACGAAAAATATGGTTcctctttaaa
gi|20 : CACAGGGAAGA---TTGGACATTGTTCCAACTATG--------T
gi|3 : ATAGCCCATTCATCAGCCAAAAGTTAATCTCCTTAACGTCGCAAATATGTCTAGCGTTTGTTTATTTAGGCACGGGATAGTAACAATG--GTGTGTATTCAAGTGTCAAACTTAACGACTGAACTTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGATGTATTTGGTATATCTGTGTTCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTTAAAAATAAAATGATTTTTGTTGTGGTT---GTATTTTAGTATCGTAGATGTTGCCTTAACTGTATAACAAGAATTTTATGGGGGAAATCGGGTGTATTGAATTTTTATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN--------NNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCATAATAATTACTATTAAAGATGAAATCTGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACAAGAATTTTACGGAAAATTAATGGGTTA-------GATCCTAAAACTGGAAGTTGAAAA-TAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATAACTGAGTACATTACGAAAAATATCGTTTC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATAA-----TTTTCGATTGATGTTAGAAATAAAAAATGGAAACCTTAGA
gi|4 : TACTGTAATAAA-TTANN-N---------NNNNNN---N--NNNN--NNNNN--------NNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNATAAGCATGAACACTACTGAA----TAA----TTAATTAGACTCTGTATTATAAATAACTTACATGTTTTTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTAATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCTGTCAAACCC-ACGCTAAGATATTAGTGTCAAACCTAGAATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAACACATGCCGGATAGACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTAATGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAATAATGGTGTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACT
gi|5 : TCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTT-------CGATCCTAAAACCGGAAGTTAAAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAAGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATATTTTTCGATTTATGTCAGAAATTAGAAATGAAAACTCTA
gi|6 : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTTTAAT------GAACAAGTTACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAATAATAACTAATAAATGA---T--TAAA--ACTAA--------TTGTAAT----AAATAACTGAATAAATA-AATAAAACAAAGTAA----------ATGAAC
gi|7 : tAATAAAAAACTGAATCAATAATTAAAACTATAAT------GAACATATAACTGAATAAATAATTAAA------TATAAACTCTATAAATAACTTAAATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TT-AA-A---------ACATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACAGAAAAAAAATATTAAAAATAAATAA----------ATAAGCATGAACACTAATGAATAATTAA----T----TAGACTCTGTATTtataa
gi|8 : aataaattaaaCTTAATANNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNAAGATGAAATATGTTTTTCTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAAT-------TTATGGGTTCGATCCTAA------AAGTTAAAAA-TAATTGTTTCGAAAT--GGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACGACAAATATGGT
gi|9 : ACCACAAGGGCCTATTGAAACGCCATAGTTAATACTTTTTACGTGATCCCCGTATGGCTAGCGTCTACCGGACATGAACACAATA
blockSeqs : CT . . C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A TAATAACTAAT TAA TA AAGTATTT TCAT T T NNNNNNNNNN TAAT ATAAT . T C C T C C G GT GT T A T T T TATTTT A GTAGT GTG G TTTTTCCTCTTT GACT A T NNT TAATGGGTTA C A CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A
blockSeqs : . . A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . T N . . . N . . . TTAAT . T A . . A C T . . A T T T T TATTTA . GTA . C TTTGCTCCTTT AACT T T . TAATGGGTT T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .
blockSeqs : . N T . . . T . . . T . C . G . . A . . . . . C TTTCCTATTT NNNN A T . TAATGGGTT C .
blockSeqs : . A T . . . A . . . C TTTCCTCTTT AAC N T . TTATGGGTT . .
blockSeqs : . C TTTTTTCTTT GA A N
blockSeqs : . C TTT . . A
blockSeqs : . C TTT . .
blockSeqs : . A TTT
blockSeqs : . G TTT
blockSeqs : . C NNN
blockSeqs : . N
blockSeqs : . .
blockSeqCons : T***** TAATGGGTT*******
originalCons : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTATGGGTTCGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
finalCons : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAAT-----TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTA-TTT-AAAATAAAATGATTTTTGTTGTTGTT---GT-TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTT-------CGATCCTAAAACCGGAAGTTGAAAA-TAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTTAAATATTCATTTTTGTTAGCATGAATATAAT
Unaligned ( gi|21 ): GCAGAGGGGTAAATGTCCATATATCACATAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 333333 99999999999999999999999999999999999999999999999999999999999999999999999 33333333333 111111 11 22222222 1111 3333333333 2222 333333333 1 1 11 11 333333 333 22222222 333333333 111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 88 888888 888888 1 99999999999999999999999999999999999999999999999999999999999999999999999 8 0 88888888888 888888 11 99999999 7777 1 8 5555555555 1111 333333333 3 7 1 6 0 1 2 1 33 33 0 1 9 3 2 3 000000 7 6 666 555 2 11111111 888888888 8888 1 1 0 444 0 1 0 1 8 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7
lowQualScore : .. ...... ...... . ....................................................................... . . ........... ...... .. ........ .... . . .......... .... ......... . . . . . . . . .. .. . . . . . . ...... . . ... ... . ........ ......... .... . . . ... . . . . . . . .................................................................................................................. .
lowQualScore : 00 333333 333333 0 33333333333333333333333333333333333333333333333333333333333333333333333 0 8 22222222222 000000 00 00000000 0000 0 0 0000000000 2222 555555555 3 3 0 7 0 0 5 0 88 88 2 0 8 2 5 2 000000 3 7 777 444 4 22222222 222222222 0000 5 6 2 000 8 0 8 4 0 8 8 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3
consensus : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTATTT-AAAATAAAATGATTTTTGTTGTTGTTGTA--TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTCGATCCTAAAACCGGAAGTT-GAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
Reference ( family-761 ) : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTATAAT------GAACAAATAACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTANATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAA-A---------AAATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACTGAATAAANA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTGATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCC-ACGCTAAGAGATTAGTGTCAAGCCTAGNATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCCGGATACACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTANCGGATATGAACACAATAGCCCATTCATCAGCCAAAAGNTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAACAATG--GTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTANATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTATTT-AAAATAAAATGATTTTTGTTGTTGTTGT---TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGAATTTTTATAGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAAGA---TTGGACATTGTTCCAACTGTG--------TTT---------AAATAAAGACTTAATTATTATTATTATTACTA---TAATCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTCGATCCTAAAACCGGAAGTT-GAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACCGAGTACATTACGAAAAATATGGTTCC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAACTAAAATATTTTTCGATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|1 : ACTA--AAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAAAAATAATAATTATGGACAAATAACTGAATAAATAATTAAACGTAAATATAGACTCTATAAATAACTTATATGTTTCTTCTCCAACAGCCAACACTCAAATGAACGCCCTACATTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTACTGTAATAAA-TTAAA-A---------AAAAAAAAAT--TAAA--CTTAA--------CTGTGAT----AAATAACTGAGTAAACA-ATTAAAAATAAATAA----------ATAAGCATGAACACTACTGAA----TAA----T----TAGACTCTGTATTATAAATAACTTACATGTTTCTTCTCCAACTGCCAACACTCAAATAAATTCCCTACGTTACACAAGACACAAAGTGGTTTTGCGCACGATTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCAGTCAAACCCCACGCTAAGAGA-------CAAGCCTAGTATGTGTCTTCATACTGTCTGCCATTTTATTGACACGATACATAATCTCTAAGCGGATTAGGCAACACATGCTGGATACACCACAATGGCCTATTGATATGTCAGAGTTAAAACCTTT-ACGTGACCCCAGTATGTGTAGCGTCTGACGGATATGAACACAATAGCCCATTCATCAGCCCAAAGTTAATCTCCATAATGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGACACGGAAGTTAAACAATG--GTGT--ATTCAAGTGTCAAACTTAGCGACTGGACATCTTAACAATAGATTAATGGGTCCTTTGTTGTAAATAGTCATGATTGGACTATATAACTCAAGCAAAGTTAGTTATATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTT--------AATAAAATGATTTTTGTTGTTGTT-T---TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACACGAATTTTATGGGGAAAATCGGATGTATTGCATTTTTATAGCAAGAGGTAAATATTTAATTTTAGAGCAACACAGGGAAGA---TTGGAGATAGTTCCAGCTGTG--------TTT---------AAATAAAGTCTTAATTATTATTATTATTACTG---TTGTCATTATTATTGTTATTAAAGATGAAATATGTTCTTTTTAGTATCATAAATGTTACCTTATCTGTGTAACATGAATTTTACGGAA--------------ATCCTAAAACTGGAAGTT-GAAAATAATGGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACTAAAAATATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAATATTTTTCAATTTATGTCAGAAATAAAAAATGAAAACCTTAGA
gi|10 : AGAGGACCACAGGGAAGA---TTGGAGATTGTTCCAAATGTGTTTGCTCCTTT---------AAATAAA----TAAT--TTATTATTGTTATAA---TAA
gi|11 : GACCCCAGGAAAGA---TTGGACATTGTTCCAAAGGTG--------TTTTTCCTCTTTAAATAAAGA------TATTATTATT
gi|12 : CACAGGGGAGA---CTAGACATTGTTCCAACTCTGTTTCCTA-TTT---------AAATAAAAAC---ATTATTATT
gi|13 : AGA---TTGGACATTGTTCCATGTGTG--------TTTCCTCTTT--GAATAAAGACTTTATTATTATTATT
gi|14 : AAGACCACAGAGAAGAGTGTTGGACACTGTTCTAACTGTG--------TTT---------
gi|15 : tTAAAGGACCTCAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------tctctttcaa
gi|16 : aTAAAGGACCACAGGGAAGA---TTGGACAATGTTCTAACTGTG--------TTT---------cctcttt
gi|17 : tcaCACAGGGAAGA---TTGGAAATTGTTCCAACTGTG--------Tcct
gi|18 : GAAGA---TTGGAGACTGTTCCAACTGTG--------TTT---------atcctct
gi|2 : ACTACTGTAAAAAAATTAAA-T---------AAATAA---TAATAAATAATTAAAAGTATTTTTGTAATTCATAAATAACTGAATAAATA-ATTAAAAATAAATAA----------ATAAGCATGACCACTACTGAA----TAAATAAT----TAGACTTTGTATTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAAGGAATTCCATACGTTACACAAGACACAAAGTGATTTTACGCACGACTTTTCTATTTTTAGATATAGCATATCACAACCATTGCATCAGTTTAATCC-ACGCTAAGAGATTAGTGTCAAGTCTAGCATGTGTCTCCTTACTGTCTGCTCTTGTATTGACACGATACATAATCTCTAAGCGGATTAGGCAGCA---ACCGGATACACCGCAATTGCCTATTGATATGTCAGAGTTAATACCTTT-ATGTGACCGCAGTATGTCTAGGGTATACCGGATAGGAACACAATAGCC------------AAAAGGTAATCTCTTTAACGTCACCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTATCAATG--ATGT--ATTAAAGTCTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATTGTCATGATTGGACTATTTAACTCGAGCAAAGTTAG--GTATT-GGTATAACTGT--CCACGGTGTGAATATTGGAGTTTTATAGCAAGAGGTAAAT----TATTTTAAAATAAAATG-TTGTTGTTTTTTTTGTAGTTTTTAGTATCGTAGATGTTGCCTTAATTGTATAACACGAATTTTATTGGGAAAATTGGATGTATTGAATTTTTATGGCAGGAGGTAAATATTTAATTTTAGAGGACCACAGGGAATA---TTGGA----GTTCCAGCTGTG--------TTTTTTCTTT--AAACAAGAACTTAATTATTATAATTATTACTA---TAATCATTATTGTTATTATTAATGATGAAATATGTTCTTTTTAGTATCATAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTCGATCCTAAAACCGGAAGTT-GAAAATAATTGTTTCGAAGTAGGGCAAGTTATAT-TTTTTGAAAAGGTATGACCGATTACATTACGAAAAATATGGTTcctctttaaa
gi|20 : CACAGGGAAGA---TTGGACATTGTTCCAACTATG--------T
gi|3 : ATAGCCCATTCATCAGCCAAAAGTTAATCTCCTTAACGTCGCAAATATGTCTAGCGTTTGTTTATTTAGGCACGGGATAGTAACAATG--GTGTGTATTCAAGTGTCAAACTTAACGACTGAACTTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGATGTATTTGGTATATCTGTGTTCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACTTTATTTAAAAATAAAATGATTTTTGTTGTGGTTGTA--TTTTAGTATCGTAGATGTTGCCTTAACTGTATAACAAGAATTTTATGGGGGAAATCGGGTGTATTGAATTTTTATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN--------NNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCATAATAATTACTATTAAAGATGAAATCTGTTCTTTTTAGTATCGTAAATGTTACCTTAACTGTGTAACAAGAATTTTACGGAAAATTAATGGGTTAGATCCTAAAACTGGAAGTT-GAAAATAATTGTTTCGAAGTAGGGCAAGTTATATATTTTTGAAAAGGTATAACTGAGTACATTACGAAAAATATCGTTTC-CGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATAA-----TTTTCGATTGATGTTAGAAATAAAAAATGGAAACCTTAGA
gi|4 : TACTGTAATAAA-TTANN-N---------NNNNNN---N--NNNN--NNNNN--------NNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNATAAGCATGAACACTACTGAA----TAA----TTAATTAGACTCTGTATTATAAATAACTTACATGTTTTTTCTCCAACGGCCAACACTCAAATGAATTCCCTACGTTACACAAGACACAAAGTAATTTTGCGCACGACTTTTCTATTTTTAGATATAGCATTTCACAACCATTGCATCTGTCAAACCC-ACGCTAAGATATTAGTGTCAAACCTAGAATGTGTCTCCTTACTGTCTGCTCTTGTATTGGCACGATACATAATCCCTAAGCGGATTAGGCAACACATGCCGGATAGACCACAATGGCCTATTGATATGTCAGAGTTAATACCTTT-ACGTGACCCCAGTATGTCTAGCGTCTAATGGATATGAACACAATAGCCCATTCATCAGCCAAAAGGTAATCTCCTTAACGTCGCCAGTATGTCTAGCGTTTGTTTATTTAGGCACGGAAGTGTAATAATGGTGTGT--ATTCAAGTGTCAAACTTAACGACTGGACGTCTTAACAATAGATTAATGGGTCCTTTGTTGTACATAGTCATGATTGGACTAAATAACTCGAGCAAAGTTAGTTGTATTTGGTATATCTGTGTCCACGGTGTGTGTATTGGAGTTTTATAGCAAGAGGTAAATACT
gi|5 : TCATTATTATTATTATTAAAGATGAAATATGTTCTTTTTAGTATCGTAAATGTTGCCTTAACTGTGTAACACGAATTTTACGGAAAATTAATGGGTTCGATCCTAAAACCGGAAGTTAAAAAATAATTGTTTCGAAATAGGGCAAGTTATATATTTTTGAAAAAGTATGACCGAGTACATTACGAAAAATATGGTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATATTTTTCGATTTATGTCAGAAATTAGAAATGAAAACTCTA
gi|6 : ACTACTAAAATATAATAATAAATAATTAAAACTAACTGTAATAAATAACTGAATAAATAATTAAAACTTTAAT------GAACAAGTTACTGAATAAATAATTAAA------TATAGACTCTATAAATAACTTACATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TTAAATAATAACTAATAAATGA---T--TAAA--ACTAA--------TTGTAAT----AAATAACTGAATAAATA-AATAAAACAAAGTAA----------ATGAAC
gi|7 : tAATAAAAAACTGAATCAATAATTAAAACTATAAT------GAACATATAACTGAATAAATAATTAAA------TATAAACTCTATAAATAACTTAAATGTTTCTTCTCCAACGGCCAACACTCAAATGAACGCCCTACGTTTAT-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTACTGTAATAAA-TT-AA-A---------ACATAA---T--TAAA--ACTAA--------CTGTAAT----AAATAACAGAAAAAAAATATTAAAAATAAATAA----------ATAAGCATGAACACTAATGAATAATTAA----T----TAGACTCTGTATTtataa
gi|8 : aataaattaaaCTTAATANNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNAAGATGAAATATGTTTTTCTTAGTATCGTAAATGTTACCTTAACTGTGTAACACGAATTTTACGGAAAATTTATGGGTTCGATCCTAA------AAGTT-AAAAATAATTGTTTCGAAAT--GGCAAGTTATATATTTTTGAAAAGGTATGACTGAGTACATTACGACAAATATGGT
gi|9 : ACCACAAGGGCCTATTGAAACGCCATAGTTAATACTTTTTACGTGATCCCCGTATGGCTAGCGTCTACCGGACATGAACACAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTTAAATATTCATTTTTGTTAGCATGAATATAAT
Unaligned ( gi|21 ): GCAGAGGGGTAAATGTCCATATATCACATAA