lowQualScore                  :                                                                                                                          8888888888                                         
lowQualScore                  :                                                                        5    3 8888888                  6   55555     666 2222222222          3                              
lowQualScore                  :                                                                        .    . .......                  .   .....     ... ..........          .                              
lowQualScore                  :                                                                        7    1 7777777                  5   99999     111 2222222222          9                              
consensus                     :                                   AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGC-CTTC-G------CAGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( gi|1 )            :                                   AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGC-CTTC-G------TAGACTGGTCCCCGGTCTCGTAT-----AATAT---A-----T----AAGGCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTAT
gi|4                          :                                   AGCCTGGTTCTCGGACCCAAAATGCTCTCGACGTTGC-CTTC-G------CA
gi|3                          :   tagactggaccccggtctcatataatatagaaAGCCTGGTTCTCGGACTCAAAACGCTCTCGGCATTGC-CTTC-G------CAa
gi|7                          :   tagactggtccccggtctcatataatataagaAGCCTGGTTCTCGGACCTAAATTGCTCTCGGCGTTGC-CTTC-G------CAacc
gi|9                          :    agactggtccccggtctcatataatataaaaAGCCTGGTTCTTGGACCCAAAACGCTCTCGGCGTTGC-CTTC-G------CAa
gi|6                          :     gactgggccccggtctcatataatataagaAGCCTGGTTCTCAGACCCAAACTGCTCTCAACGTTGC-CTTC-
gi|5                          : agactggtcctcgctctcatataatataagatgtAGCCTGGTTCTCGGACCCAAAATGCTCTTGTCACTGCATTTC-G------CAa
gi|8                          :                                actAGCCTCGTTCTCGGACCTAGAATGCTTTTGGCGTTGC-CTTC-G------CA-------------TCT--TAT-----AATAT---A-----T----GAGACtcgtattatatgagaccggagaccagtct
gi|14                         :                      agactggcccctgAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGC-CTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|11                         :                                   AGCCTGGTTCTCGGACG-AAAATGCTATCGGCGTTGCATTTC-G------CA
gi|15                         :                                  tAGCCTGGTTCTCGGACCCAAAATGCCCTCGGCGTTGC-CTtttttttatatgagaccggagaccagtcc
gi|2                          :                                   AGCCTGGTTCTCGGACCGAAAATGATCTCGGCGTTGC-CTTT-G------TAaactgc
gi|10                         :                                    GCCTGGTTCTCGGACCCAAAATGTTCTCGGCGTTGC-CTTC-G------CAtcttctataacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|12                         :       agactggtccccggtctcatataatataagaCTGGTTCTCGGACCCAAAATGCTCTCAGCGTTGC-CTTC-G------CA
gi|13                         :                agactggtccccggtctcatataatataagaGGACCTAAAATGCTCTCGGCGTTAC-CTTC-G------CAt
gi|4                          :                                               tagactggtctccggtctcatataatataaga------TAGACTGGACCCCGGTCTCATAT-----AATAT---AGAA--TGCG-AAGGCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAaggcta
gi|3                          :                                                                               ------TAGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|13                         :                                                                               ------TAGACTGGTCTCCGGTCTCATAT-----AATATAAGA-----TGCG-AAGGTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAcc
gi|12                         :                                                                                      AGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCTGAGAGCATTTTGGGTCCGAGAACCAG
gi|10                         :                                                                                      AGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|7                          :                                                                                      AGACTGGTCCCCGGTCTCATAT-----AATAT---AAAA--TGCG-AAGGCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|6                          :                                                                                      AGACTGGTCCTCGCTCTCATAT-----AATAT---AAGATGTG---AAGGCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|5                          :                                                                                      AGACTGGTCTCCGGTCTCATAT-----AATACG--A-----TGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|8                          :                                                                                    acAGACTGGCCCCTGGTCTCATAT-----ATTAT---AAGA--TGCG-AAGGCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|21                         :                                                                                      AGACTGGTCCCCGGTCTCATAT-----AATAT---A-----
gi|19                         :                                                                                      AGACTGGTCCCCGGTCTCATAT-----AATAT---A-----aga
gi|17                         :                                                                                     aAGACTGGTCTCCGGTCTCATAT-----AATAT---A-----aga
gi|18                         :                                                                                      AGACTTGTCCCCGGTCTCATAT-----AATAT---A-----agatgcgaa
gi|9                          :                                                                                       GACTGGGCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCTagag
gi|11                         :                                                                                       GACTGGTCTCCGGTCTCATATAAAAAAATGC---G-----A----AATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|20                         :                                                                                       GACTGGTCCCCGGTCTCATAT-----AATAT---A-----c
gi|2                          :                                                                                                             aatctATAC---A----------AAGGCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|14                         :                                                                                                                                     AGGCAACGCCGAGAGCATTTTGAGTCCGAGAACCAGGCTcttctataacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|15                         :                                                                                                                                     AGGCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTAcctgcttcttttgactggtccccgttctc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC






Alignments
lowQualScore                  :                                           2                                                                                     
lowQualScore                  :                                           0  777777                                      5                                      
lowQualScore                  :                                           .  ......                                      .                                      
lowQualScore                  :                                           0  777777                                      7                                      
consensus                     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( family-7429 )     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|1                          :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GT------AGACTGGTCCCCGGTCTCGTATAATAT---AT---AAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|10                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|11                         :                                                     GACTGGTCTCCGGTCTCATATAA-A-AAAATGCGAAATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|12                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGc
gi|13                         :                                              ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAG-GTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAt
gi|14                         : tAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGCCTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|15                         :                                                                                        AG-GCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTA
gi|17                         :                                              ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAactgc
gi|18                         :                                              ------AGACTTGTCCCCGGTCTCATATAATATAAGA
gi|19                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGAg
gi|2                          :                                                                          aATAGAAGATACAAAG-GCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|20                         :                                                     GACTGGTCCCCGGTCTCATATAATATAAGATaacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|21                         :                                             a------AGACTGGTCCCCGGTCTCATATAATATAAGA
gi|3                          :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|4                          :                                             t------AGACTGGACCCCGGTCTCATATAATATAGAATGCGAAG-GCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAcc
gi|5                          :                                             t------AGACTGGTCTCCGGTCTCATATAATAC--GATGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|6                          :                                            ac------AGACTGGTCCTCGCTCTCATATAATATAAGATGTGAAG-GCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|7                          :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAAATGCGAAG-GCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|8                          :                                              ------AGACTGGCCCCTGGTCTCATATATTATAAGATGCGAAG-GCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|9                          :                                                     GACTGGGCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC






Alignments
lowQualScore                  :                                           1                                                                                     
lowQualScore                  :                                           5  777777                                      5                                      
lowQualScore                  :                                           .  ......                                      .                                      
lowQualScore                  :                                           5  777777                                      7                                      
consensus                     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( family-7429 )     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|1                          :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GT------AGACTGGTCCCCGGTCTCGTATAATAT---AT---AAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|10                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|11                         :                                                     GACTGGTCTCCGGTCTCATATAA-A-AAAATGCGAAATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|12                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGc
gi|13                         :                                              ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAG-GTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAt
gi|14                         : tAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGCCTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|15                         :                                                                                        AG-GCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTA
gi|17                         :                                              ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAactgc
gi|18                         :                                              ------AGACTTGTCCCCGGTCTCATATAATATAAGA
gi|19                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGAg
gi|2                          :                                                                          aATAGAAGATACAAAG-GCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|20                         :                                                     GACTGGTCCCCGGTCTCATATAATATAAGATaacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|21                         :                                             a------AGACTGGTCCCCGGTCTCATATAATATAAGA
gi|3                          :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|4                          :                                             t------AGACTGGACCCCGGTCTCATATAATATAGAATGCGAAG-GCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAcc
gi|5                          :                                             t------AGACTGGTCTCCGGTCTCATATAATAC--GATGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|6                          :                                            ac------AGACTGGTCCTCGCTCTCATATAATATAAGATGTGAAG-GCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|7                          :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAAATGCGAAG-GCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|8                          :                                              ------AGACTGGCCCCTGGTCTCATATATTATAAGATGCGAAG-GCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|9                          :                                                     GACTGGGCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCT


blockSeqs                     :                                           T  TTCTTT                                      T
blockSeqs                     :                                              .                                           T
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                           .
blockSeqs                     :                                              .                                            


blockSeqCons                  :  
originalCons                  :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
finalCons                     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC






Alignments
lowQualScore                  :                                           1                                                                                     
lowQualScore                  :                                           5  777777                                      5                                      
lowQualScore                  :                                           .  ......                                      .                                      
lowQualScore                  :                                           5  777777                                      7                                      
consensus                     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( family-7429 )     :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|1                          :  AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GT------AGACTGGTCCCCGGTCTCGTATAATAT---AT---AAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|10                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|11                         :                                                     GACTGGTCTCCGGTCTCATATAA-A-AAAATGCGAAATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|12                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGc
gi|13                         :                                              ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAG-GTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAt
gi|14                         : tAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGCCTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|15                         :                                                                                        AG-GCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTA
gi|17                         :                                              ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAactgc
gi|18                         :                                              ------AGACTTGTCCCCGGTCTCATATAATATAAGA
gi|19                         :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGAg
gi|2                          :                                                                          aATAGAAGATACAAAG-GCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|20                         :                                                     GACTGGTCCCCGGTCTCATATAATATAAGATaacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|21                         :                                             a------AGACTGGTCCCCGGTCTCATATAATATAAGA
gi|3                          :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|4                          :                                             t------AGACTGGACCCCGGTCTCATATAATATAGAATGCGAAG-GCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAcc
gi|5                          :                                             t------AGACTGGTCTCCGGTCTCATATAATAC--GATGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|6                          :                                            ac------AGACTGGTCCTCGCTCTCATATAATATAAGATGTGAAG-GCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|7                          :                                              ------AGACTGGTCCCCGGTCTCATATAATATAAAATGCGAAG-GCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|8                          :                                              ------AGACTGGCCCCTGGTCTCATATATTATAAGATGCGAAG-GCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|9                          :                                                     GACTGGGCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC