lowQualScore : 8888888888
lowQualScore : 5 3 8888888 6 55555 666 2222222222 3
lowQualScore : . . ....... . ..... ... .......... .
lowQualScore : 7 1 7777777 5 99999 111 2222222222 9
consensus : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGC-CTTC-G------CAGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( gi|1 ) : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGC-CTTC-G------TAGACTGGTCCCCGGTCTCGTAT-----AATAT---A-----T----AAGGCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTAT
gi|4 : AGCCTGGTTCTCGGACCCAAAATGCTCTCGACGTTGC-CTTC-G------CA
gi|3 : tagactggaccccggtctcatataatatagaaAGCCTGGTTCTCGGACTCAAAACGCTCTCGGCATTGC-CTTC-G------CAa
gi|7 : tagactggtccccggtctcatataatataagaAGCCTGGTTCTCGGACCTAAATTGCTCTCGGCGTTGC-CTTC-G------CAacc
gi|9 : agactggtccccggtctcatataatataaaaAGCCTGGTTCTTGGACCCAAAACGCTCTCGGCGTTGC-CTTC-G------CAa
gi|6 : gactgggccccggtctcatataatataagaAGCCTGGTTCTCAGACCCAAACTGCTCTCAACGTTGC-CTTC-
gi|5 : agactggtcctcgctctcatataatataagatgtAGCCTGGTTCTCGGACCCAAAATGCTCTTGTCACTGCATTTC-G------CAa
gi|8 : actAGCCTCGTTCTCGGACCTAGAATGCTTTTGGCGTTGC-CTTC-G------CA-------------TCT--TAT-----AATAT---A-----T----GAGACtcgtattatatgagaccggagaccagtct
gi|14 : agactggcccctgAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGC-CTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|11 : AGCCTGGTTCTCGGACG-AAAATGCTATCGGCGTTGCATTTC-G------CA
gi|15 : tAGCCTGGTTCTCGGACCCAAAATGCCCTCGGCGTTGC-CTtttttttatatgagaccggagaccagtcc
gi|2 : AGCCTGGTTCTCGGACCGAAAATGATCTCGGCGTTGC-CTTT-G------TAaactgc
gi|10 : GCCTGGTTCTCGGACCCAAAATGTTCTCGGCGTTGC-CTTC-G------CAtcttctataacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|12 : agactggtccccggtctcatataatataagaCTGGTTCTCGGACCCAAAATGCTCTCAGCGTTGC-CTTC-G------CA
gi|13 : agactggtccccggtctcatataatataagaGGACCTAAAATGCTCTCGGCGTTAC-CTTC-G------CAt
gi|4 : tagactggtctccggtctcatataatataaga------TAGACTGGACCCCGGTCTCATAT-----AATAT---AGAA--TGCG-AAGGCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAaggcta
gi|3 : ------TAGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|13 : ------TAGACTGGTCTCCGGTCTCATAT-----AATATAAGA-----TGCG-AAGGTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAcc
gi|12 : AGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCTGAGAGCATTTTGGGTCCGAGAACCAG
gi|10 : AGACTGGTCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|7 : AGACTGGTCCCCGGTCTCATAT-----AATAT---AAAA--TGCG-AAGGCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|6 : AGACTGGTCCTCGCTCTCATAT-----AATAT---AAGATGTG---AAGGCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|5 : AGACTGGTCTCCGGTCTCATAT-----AATACG--A-----TGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|8 : acAGACTGGCCCCTGGTCTCATAT-----ATTAT---AAGA--TGCG-AAGGCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|21 : AGACTGGTCCCCGGTCTCATAT-----AATAT---A-----
gi|19 : AGACTGGTCCCCGGTCTCATAT-----AATAT---A-----aga
gi|17 : aAGACTGGTCTCCGGTCTCATAT-----AATAT---A-----aga
gi|18 : AGACTTGTCCCCGGTCTCATAT-----AATAT---A-----agatgcgaa
gi|9 : GACTGGGCCCCGGTCTCATAT-----AATAT---AAGA--TGCG-AAGGCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCTagag
gi|11 : GACTGGTCTCCGGTCTCATATAAAAAAATGC---G-----A----AATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|20 : GACTGGTCCCCGGTCTCATAT-----AATAT---A-----c
gi|2 : aatctATAC---A----------AAGGCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|14 : AGGCAACGCCGAGAGCATTTTGAGTCCGAGAACCAGGCTcttctataacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|15 : AGGCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTAcctgcttcttttgactggtccccgttctc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC
Alignments
lowQualScore : 2
lowQualScore : 0 777777 5
lowQualScore : . ...... .
lowQualScore : 0 777777 7
consensus : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( family-7429 ) : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|1 : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GT------AGACTGGTCCCCGGTCTCGTATAATAT---AT---AAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|10 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|11 : GACTGGTCTCCGGTCTCATATAA-A-AAAATGCGAAATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|12 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGc
gi|13 : ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAG-GTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAt
gi|14 : tAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGCCTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|15 : AG-GCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTA
gi|17 : ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAactgc
gi|18 : ------AGACTTGTCCCCGGTCTCATATAATATAAGA
gi|19 : ------AGACTGGTCCCCGGTCTCATATAATATAAGAg
gi|2 : aATAGAAGATACAAAG-GCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|20 : GACTGGTCCCCGGTCTCATATAATATAAGATaacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|21 : a------AGACTGGTCCCCGGTCTCATATAATATAAGA
gi|3 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|4 : t------AGACTGGACCCCGGTCTCATATAATATAGAATGCGAAG-GCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAcc
gi|5 : t------AGACTGGTCTCCGGTCTCATATAATAC--GATGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|6 : ac------AGACTGGTCCTCGCTCTCATATAATATAAGATGTGAAG-GCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|7 : ------AGACTGGTCCCCGGTCTCATATAATATAAAATGCGAAG-GCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|8 : ------AGACTGGCCCCTGGTCTCATATATTATAAGATGCGAAG-GCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|9 : GACTGGGCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC
Alignments
lowQualScore : 1
lowQualScore : 5 777777 5
lowQualScore : . ...... .
lowQualScore : 5 777777 7
consensus : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( family-7429 ) : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|1 : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GT------AGACTGGTCCCCGGTCTCGTATAATAT---AT---AAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|10 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|11 : GACTGGTCTCCGGTCTCATATAA-A-AAAATGCGAAATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|12 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGc
gi|13 : ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAG-GTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAt
gi|14 : tAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGCCTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|15 : AG-GCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTA
gi|17 : ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAactgc
gi|18 : ------AGACTTGTCCCCGGTCTCATATAATATAAGA
gi|19 : ------AGACTGGTCCCCGGTCTCATATAATATAAGAg
gi|2 : aATAGAAGATACAAAG-GCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|20 : GACTGGTCCCCGGTCTCATATAATATAAGATaacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|21 : a------AGACTGGTCCCCGGTCTCATATAATATAAGA
gi|3 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|4 : t------AGACTGGACCCCGGTCTCATATAATATAGAATGCGAAG-GCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAcc
gi|5 : t------AGACTGGTCTCCGGTCTCATATAATAC--GATGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|6 : ac------AGACTGGTCCTCGCTCTCATATAATATAAGATGTGAAG-GCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|7 : ------AGACTGGTCCCCGGTCTCATATAATATAAAATGCGAAG-GCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|8 : ------AGACTGGCCCCTGGTCTCATATATTATAAGATGCGAAG-GCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|9 : GACTGGGCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCT
blockSeqs : T TTCTTT T
blockSeqs : . T
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqCons :
originalCons : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
finalCons : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC
Alignments
lowQualScore : 1
lowQualScore : 5 777777 5
lowQualScore : . ...... .
lowQualScore : 5 777777 7
consensus : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
Reference ( family-7429 ) : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTCCTGC------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|1 : AGCCTGGTTCTCGGACCCAAAATGCTCTCGGCGTTGCCTTC-GT------AGACTGGTCCCCGGTCTCGTATAATAT---AT---AAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|10 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAACATTTTGGGTCCGAGAACCAGGCt
gi|11 : GACTGGTCTCCGGTCTCATATAA-A-AAAATGCGAAATGCAACGCCGATAGCATTTT-CGTCCGAGAACCAGGCTA
gi|12 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCTGAGAGCATTTTGGGTCCGAGAACCAGc
gi|13 : ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAG-GTAACGCCGAGAGCATTTTAGGT-------CCAGGCTAt
gi|14 : tAGCCTGGTTCTCGGACTCAAAATGCTCTCGGCGTTGCCTCCTGCTTCTTTTGACTGGTCCCCGTTCTC
gi|15 : AG-GCAACGCCGAGGGCATTTTGGGTCCGAGAACCAGGCTA
gi|17 : ------AGACTGGTCTCCGGTCTCATATAATATAAGATGCGAAactgc
gi|18 : ------AGACTTGTCCCCGGTCTCATATAATATAAGA
gi|19 : ------AGACTGGTCCCCGGTCTCATATAATATAAGAg
gi|2 : aATAGAAGATACAAAG-GCAACGCCGAGATCATTTTCGGTCCGAGAACCAGGCT
gi|20 : GACTGGTCCCCGGTCTCATATAATATAAGATaacctgcatacaggacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaac
gi|21 : a------AGACTGGTCCCCGGTCTCATATAATATAAGA
gi|3 : ------AGACTGGTCCCCGGTCTCATATAATATAAGATGCGAAG-GCAATGCCGAGAGCGTTTTGAGTCCGAGAACCAGGCTA
gi|4 : t------AGACTGGACCCCGGTCTCATATAATATAGAATGCGAAG-GCAACGTCGAGAGCATTTTGGGTCCGAGAACCAGGCTAcc
gi|5 : t------AGACTGGTCTCCGGTCTCATATAATAC--GATGCGAAATGCAGTGACAAGAGCATTTTGGGTCCGAGAACCAGGCTA
gi|6 : ac------AGACTGGTCCTCGCTCTCATATAATATAAGATGTGAAG-GCAACGTTGAGAGCAGTTTGGGTCTGAGAACCAGGCTA
gi|7 : ------AGACTGGTCCCCGGTCTCATATAATATAAAATGCGAAG-GCAACGCCGAGAGCAATTTAGGTCCGAGAACCAGGCTA
gi|8 : ------AGACTGGCCCCTGGTCTCATATATTATAAGATGCGAAG-GCAACGCCAAAAGCATTCTAGGTCCGAGAACGAGGCT
gi|9 : GACTGGGCCCCGGTCTCATATAATATAAGATGCGAAG-GCAACGCCGAGAGCGTTTTGGGTCCAAGAACCAGGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGAACCCATTTCGATCCAAGCTCCTGATTTCCCAAGC