lowQualScore : 1111111 1 88888888888888888888888888888888888888 3333333 1 111111111 1111111111111111111111 1 11111 2 2222222222 11 2222 11111 1
lowQualScore : 3 2222222 2 6 3 44 555 3 555 3 4 3 77777777777777777777777777777777777777 3 1 0000000 2 3 3 3 66666 444 2 000000000 4444444444444444444444 2 55 66 1 99999 444 777777 9 2 6666666666 2 66666 5 33 4 33 1111 55555 6666 6666 1 2 2 4
lowQualScore : . ....... . . . .. ... . ... . . . ...................................... . . ....... . . . . ..... ... . ......... ...................... . .. .. . ..... ... ...... . . .......... . ..... . .. . .. .... ..... .... .... . . . .
lowQualScore : 8 2222222 4 9 3 66 888 3 888 6 2 2 88888888888888888888888888888888888888 0 2 0000000 5 1 1 8 22222 444 5 000000000 8888888888888888888888 5 99 66 7 66666 777 777777 3 7 3333333333 7 77777 3 11 9 99 6666 44444 1111 1111 7 9 6 9
consensus : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGGGGGG-GTG-GGGGTAAACCTTTTTTTN-A-ACCNAGCATTCTAACT-TCCTNATAAGTCTGAATCC-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTAT----TTTTATTTTGTTTGTAAAAATTCAACCA---TGTAAGT------GTGATTT-TGT---C------A-A-----AA-AAAAC-AGGGTCGGTGGGTAGAAAC--TT--TTTTTTNAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
Reference ( gi|1 ) : ATATATATAGAGAATATCA-----ATTAATAACAAGAATAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCCTTTCTTCATTAAAGCATATAAAAGTTGGGGGGGAGGGGGTGCGGGGTAAACCTTTTTTTT-A-ACCTAGCATTCTAACT-TCCGTATAAGTCTGAATCC-T-AATTTTATTCATCCCAACAACTACTCTAATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTAT----TTTTATTTTGTTTGTAAAAATTCAACCA---TGTAAGT------GTGA-TT-TGT---C------A-A-----AA-AAAAG-AGGGTCGGTGGGTAAAAAC--TT--TCTTTTTAGCCTTATTATCAAGTG----C----TTATGTATATA-TCTGCTGTATAAAAA
gi|6 : ATATAAAGAGAAAATCA-----ATCAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAA-TTTTCGTTTCTTCATTAAAGCATAAAAAAAT-----GGGGGGGGG---GGGGTAAAACTTTTTTTA-A-GCCTAACATTCTAACT-TCCTGATAAGTCTGAATCC-T-AATTTTATTCATCCTAACAACTACTCTAATACAACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGAAGCAGTCTAT----TTTTATTTTGTTTGTAAAAATTCAACCA---TGTAAGT------GTGA-TT-TGT---C------A-C-----GA-AAAAG-AGGGTC-GTTGGTAGAAACTTTT--TTTTTTTAACTTTATTATCAAGTG----C----TTATTTATATA-TCTGCTGTATAAAAA
gi|3 : cataATATATAGAGAATATCA-----ATAAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAAATTTTTTTTTTTCATTAAAGCATATAAAAATTGGGGTGGGGTGGG---GGGTTAAANNNNNNNNNN-N-NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNTCC-T-AATTTTATTCATCCCAACAACTACTTTAATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTAT----TTTTAATTTGTTTGTAAAAATTCAATCA---TGCAAGT------GTGA-TT-TGT---CAA----A-A-----AA-AAAAG-AGGGTCGGTGGGTAGAAAC--TT----TTTTTAACTTTATTATCAAGTG----C----TTATGTATATA-TCTGCTATGTAGAAA
gi|4 : ATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATTATG---ACTTTTTTAATTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG---------TG-GGGGTAAACCNNNNNNNN-N-NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNGATTCC-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATA-----TTTTATTTTGTTTGTAAAATATCAACCA---TGTAAGT------GTGATTT-TGT---CT-----A-A-----AA-AAAAC-AGGGTTGGTGGGTAGAAAC--TT--T-TTTTTAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|5 : tcataATATATAGAGAATATAA-----ATTAATTACAAGAGTAAT-A--T---A-GAATCATG---ATTATTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTCAGGGTGGGGGTGTGATGGGTTAA-------------ACCTAGCATTC--ATT------ATAAGTCAGAATCC-C-AATTTTATACATCAAAACAACTACTCTAATACCTCAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GACAGTTG-TGAAAGTAGCAGTGTGT----TTTTATTTTGTTTATAAAAATTCAACCA---TGTAAGTCACACAGTGATTT-TGT---CCA----A-A-----AA-AAAAC-AGGGTCGGTGGGTAGAAAC--TT--TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|7 : tcataATATATAGAGAATATAATATATATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATATTTTTA-TTAACATTTTTGTTTCTTCACTAAAA---------------GGGGGGGGGGT------TAAAAAATTTTCTA-A-ACTAAGCATTCTAACT-TCCAAATAAGTCTGAATCC-T-AATTTTATTCATTACAACAACTACTCTAATACCACAAA-----CAAGTTT---T-CT---------GAAT-------------G--------A-ATGT--GAAAGTGG-TTAAAGGAGCATTTTA-----TTTTATTTTGTTTGTAAAAATCCAACCA---TGTAAGT------GTGATTT-TGTC--C------ACA-----AA-AAAAC-AGGGTCGGTGGGAAGAAAC--AT--TTTTTTAAACTTTATTATCAAGTG----T----TTATGTAGATA-TTTGCTGTATAGAAA
gi|2 : cataATATATAGAGAATATAA-----ATTAATAACAAGAGTTAT-A--T---A-GATTCATG---ATTTTTTTA-TTAAAATTTTCGTCTCTTCATTAAAGCAAATAAAAGTTGGGGGTGGAGGTGTGGGGGGNNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNN-NNNNN-----------TCC-T-TATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGG-TGAAGG--ACGTTCTAA----TTTTATTTTGTTTGTAAAAATTCAACCATGTTGTAATT------GTGATTT-TGTCCAC------A-A-----AA-AAAAC-AGGGTCGGTTGGTAGAAAC--TT--TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|9 : caaaATATATTGAGAA-------------AATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGTGGGGG
gi|8 : taATAGATAGAGAAAATAA-----ATGAAAAACAAAATTAAT-AATT---ATGTATCATG---TTAATTTTA-TTGAA-TTTTCATTTCTT--TCAAAAAATAT--AATTTT------------T------TAAACCTTTTTTTTTATACCTAACATTCTCACTATC----TAA---TAAATCT-T-AATCT--------------ACTATTTTAATACCAAAAA-----AAAAATTATAT-CTCAATATTTAAAAT-------------G--------ATAT-T--GAAAATGG-TGAAAGTAGCATTCTATTTTATTTTA-TTTGTTTGTAAAAATCTAATTA---TGAAACC------ATGATTT-TGT---C------C-A-----AATAAAAC-AGGATTGGTGTGTAGGAAC--TTAATTTTTTTAAAC-----ATTCAGTG----CATAATTATGTAGGTG-TTAGCAGTATAGAAtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaataccacaaataagttttctgaatgaatatgaaagtggtgaaagtagcattatatttttatattgttagtaaaaactcaaggatgtaagtgtgactttgtccaaaaagaaacaggattggtgggtaaaaacttttttttaacttaattatcaagtgcttatgtagatatttgctgtatagaa
gi|17 : cataATATATAGAGAATATAA-----ATTAATAACAAAAGTTGT-A--T---A-GTATCATG---ATTTTTACA-TTAAAATTTTCATTTCTTCATTAAAGCATACACAAGTT------------GTG----------TTTTTTTTTAA-ACCAAGCATTCTAAAT-T---------TCTGAATCC-T-AAT
gi|16 : gtcataATATATAGAGAAAATAA-----ATGATTAATATAAGTAAT-A--------GTATTGTG---TTTTTTTTA-ATTAAATTTCTGTTTCATTATTAAAGCATATAAAA---------------GTGCTTTTTTACCTTTT--TTT-ACACCAAATATTCTCACT-TTCTTATAAGTCTGAATCCTT-AATATTTTTAATT---ACAACTATTCTAATA
gi|20 : gtcatgATATACAGAGAATATAA-----ATTAATAAGAACAGTAATTA--TTAAA-GAATCATG---ATTTTTTTA-TTAAAATTTTTGGTTCTTC
gi|21 : ataATAGATAGAGAAAATAA-----ATGAATAACAAAAGTAAT-A--T---A-GTATCATGTTAATTTT
gi|19 : atcataTTTAACT-TCCTAATAAGTCT-AATCC-T-ATATTCATTCATCACAACAACTACTCTTATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------A--------A-ATAT--GAAAGTGG-TTGAAGTAG
gi|13 : tctttaatggcctaatgtaagaaaTAAATCTGAATCC-T-AATTTAATTCATCTAAACAACTACACTAAAACCACAAA-----TAAGTTT---T-CT---------AAAT-------------G--------A-ATAT--GAAAGTGG-TGAA---AGCATTCTA-----TTTTATTTTGTTT------ATTCAAACG---CGTAAGT------GTGA-TT-T-T------------------------------GTCAGTGGGTAGAAAC--TT--TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATT-TCTGCTCTATAGAAAatactaa
gi|18 : GAATCC-TTAATATTTTTAATT---ACAGCTATTCCAATAATACAAA-----TATGTTT---T-CT---------TAATTAACTTTTAAAACG--------A-A-AT--GAAAGTGG-TG--AGTAGCATTCTA-----TTTTATTTT-----------------TA---TGAAAGT------GTGATTT-TAT---C------A-A-----CA-AAAAA-A
gi|11 : -T-AATTTCATTAATCACAACAACTACTCTAATAACACAAA-----TAAGTTT---T-CT---------AAAT-------------G--------A-AT----------GG-TGAAAGTAGCATTCTAT----TTT-ATTTTGTTTGTATTAATTCAACCA---CGTAAGT------GTGA-TTCTGT---C------A-ACAACAAA-AAAAC-AGGATTGCTGGGTAGAAAC--CC--TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAAacg
gi|12 : TTTATTCATCACAACAACTATTCTAATACCACAAA-----TAACTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGGTTGAAAGTAACATTCTA-----TTTTATTTTGTTTGTAAAAATTCAACCA---TGTTAGT------GTGAGTT-TGT---CT-----A-A-----AA-AAAAC-AGGGTCGGTGGTTAGAAAC--TT----TTTTAAACTTTATTATCAGGTG----C----TTATGTAAATATTTTGCTGTATAGAAA
gi|10 : TTTATTCATCACAACAACTACTCTAATGTCACAAAACAAATAAATTA---T-CT---------GAAT-------------G--------A-ATATATGAAAGTGG-TGAAAGTAGCTTTCTAT----TTT-ATTTTGTTAGTAAAAATTCAACCA---TGTAAGT------GTGATTT-TGT---CTGAAAAA-A-----AA-AAAAT-AGGGTCGGTGGGTAGAAAC--T--------------TTATTATCAAGTG----C----TTATGTAGATA-TTTGGTGTATAGAAA
gi|15 : caTCTCAACAACTACTCTAATACTACAAA-----TAAGTTT---T-CT---------GAAC-------------G--------A-GTAT--GAAAGTGG-TGAAAGTAGCATTCTA-----TTTTATTTTGTTTGTAAGAATTCAAGCA---TGTAAGT------GTGATTT-TGT---A------A-A-----AA-AAAAACATGGTCAGTGGGTAGAAAC--T--------------TTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
gi|14 : CAAATATTCTAATACCACGAA-----TATTTTT---TTCT---------GAAT-------------ATTTAAAATG-ATATT-GAAAATGG-TGAAAGTAGCA----------TTCTAATTTGTTTGTAAAAATCTAACTA---TGAAACC------GTGGTTT-TGT---C------C-A-----AATAAAAC-AGGGTCGGTGTGTAGCAAC--TTA-TTTTTTT----TGAATATTCAGTGCATAC----TTATGTAGGTA-TTTGCGGTATAGAA
gi|9 : CTAATACCACAAA-----TAAGTTT---T-CT---------GAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATAT----TTTTATATTGTTAGTAAAAACTCAAGGA---TGTAAGT------GTGACTT-TGT---CCA----A-A-----AA-GAAAC-AGGATTGGTGGGTAAAAAC--TT--T-TTTTTAACTTAATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
Alignments
lowQualScore : 5555555555555555555 1111111111111111111111 1 222222
lowQualScore : 2 77777 1 3 44 555 3 555 3 2 0000000000000000000 1 0 1 5555 1 0 3333 33 2 2 1 55555 2 3333333333333333333333 2 55 2 7 5555 444 777777 2 5 666666 2 66666 5 888888 9 5555 5555 2
lowQualScore : . ..... . . .. ... . ... . . ................... . . . .... . . .... .. . . . ..... . ...................... . .. . . .... ... ...... . . ...... . ..... . ...... . .... .... .
lowQualScore : 8 77777 5 1 22 444 1 444 3 0 5555555555555555555 4 9 3 1111 0 3 1111 99 7 7 2 99999 4 4444444444444444444444 4 66 4 1 3333 444 222222 6 0 999999 5 22222 0 555555 0 7777 7777 7
consensus : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTTTTA-A-ACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---TTTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
Reference ( family-715 ) : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTTTTN-A-ACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---TTTTTTTNAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|1 : ATATATAGAGAATATCA-----ATTAATAACAAGAATAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCCTTTCTTCATTAAAGCATATAAAAGTTGGGGGGGAGGGG-GTGCG-GGGTAAACCTTTTTTTT-A-ACCTAGCATTCTAACTTCCGTATAAGTCTGAATC--C-T-AATTTTATTCATCCCAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-A-----AA-AAAAGAGGGTCGGTGGGTAAAAAC--T---TTCTTTTTAGCCTTATTATCAAGTG----C----TTATGTATATA-TCTGCTGTATAAAAA
gi|10 : atTTTATTCATCACAACAACTACTCTAATGTCACAAAACAAATAAATTAT-CTGAAT-------------G--------A-ATATATGAAAGTGG-TGAAAGTAGCTTTCTATTTT-AT----TTTGTTAGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-CTGAAAAA-A-----AA-AAAATAGGGTCGGTGGGTAGA-----------------AACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGGTGTATAGAAA
gi|11 : ca-T-AATTTCATTAATCACAACAACTACTCTAATAACACAAA-----TAAGTTTT-CTAAAT-------------G--------A-AT----------GG-TGAAAGTAGCATTCTATTTT-AT----TTTGTTTGTATTAATTCAACCACGT---AAGT------GTGATTCTGT-C------A-ACAACAAA-AAAACAGGATTGCTGGGTAGAAAC--C---CTTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|12 : TTTATTCATCACAACAACTATTCTAATACCACAAA-----TAACTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGGTTGAAAGTAACATTCTA-TTTTAT----TTTGTTTGTAAAAATTCAACCATGT---TAGT------GTGAGTTTGT-CT-----A-A-----AA-AAAACAGGGTCGGTGGTTAGAAAC-------TTTTTTAAACTTTATTATCAGGTG----C----TTATGTAAATATTTTGCTGTATAGAAA
gi|13 : TAAATCTGAATC--C-T-AATTTAATTCATCTAAACAACTACACTAAAACCACAAA-----TAAGTTTT-CTAAAT-------------G--------A-ATAT--GAAAGTGG-TGAA---AGCATTCTA-TTTTAT----TTTGTTT------ATTCAAACGCGT---AAGT------GTGATTTTGT-C------A----------------------GTGGGTAGAAAC--T---TTTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATT-TCTGCTCTATAGAAA
gi|14 : CAAATATTCTAATACCACGAA-----TATTTTTTTCTGAAT-------------ATTTAAAATG-ATATT-GAAAATGG-TGAAAGTAGCATTCTA-----AT----TT-GTTTGTAAAAATCTAACTATGA---AACC------GTGGTTTTGT-C------C-A-----AATAAAACAGGGTCGGTGTGTAGCAAC--T---TATTTTTT---TTGAATATTCAGTGCATAC----TTATGTAGGTA-TTTGCGGTATAGAA
gi|15 : TCTCAACAACTACTCTAATACTACAAA-----TAAGTTTT-CTGAAC-------------G--------A-GTAT--GAAAGTGG-TGAAAGTAGCATTCTA-TTTTAT----TTTGTTTGTAAGAATTCAAGCATGT---AAGT------GTGATTTTGTAA------A-A-----AA-AAAACATGGTCAGTGGGTAGA-----------------AACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
gi|16 : ATATATAGAGAAAATAA-----ATGATTAATATAAGTAAT-A--------GTATTGTG---TTTTTTTTA-ATTAAATTTCTGTTTCATTATTAAAGCATATAAAA----------------GTG-C-TTTTTTACCTTTTTTTA-C-ACCAAATATTCTCACTTTCTTATAAGTCTGAATC--CTT-AATATTTTTAATT---ACAACTATTCTAATA
gi|17 : gtcatgATATATAGAGAATATAA-----ATTAATAACAAAAGTTGT-A--T---A-GTATCATG---ATTTTTACA-TTAAAATTTTCATTTCTTCATTAAAGCATACACAAGTT-------------GTG----------TTTTTTTTTA-A-ACCAAGCATTCTAAATT---------TCTGAATC--C-T-AAT
gi|18 : gtcataGAATC--C-TTAATATTTTTAATTACAGC---TATTCCAATAATACAAA-----TATGTTTT-CTTAATTAACTTTTAAAACG--------A-A-AT--GAAAGTGG-TG--AGTAGCATTCTA-TTTTAT----TTT-----------------TATGA---AAGT------GTGATTTTAT-C------A-A-----CA-AAAA
gi|19 : TTTAACTTCCTAATAAGTCT-AATC--C-T-ATATTCATTCATCACAACAACTACTCTTATACCACAAA-----TAAGTTTT-CTGAAT-------------A--------A-ATAT--GAAAGTGG-TTGAAGTAG-ATACTAaaacg
gi|2 : tctttaatggcctaatgtaagaaaATATATAGAGAATATAA-----ATTAATAACAAGAGTTAT-A--T---A-GATTCATG---ATTTTTTTA-TTAAAATTTTCGTCTCTTCATTAAAGCAAATAAAAGTTGGGGGTG-GAGGTGTG-G-GGGGNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNT----------C--C-T-TATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAGG--ACGTTCTAATTTTAT----TTTGTTTGTAAAAATTCAACCATGTTGTAATT------GTGATTTTGT-CCAC---A-A-----AA-AAAACAGGGTCGGTTGGTAGAAAC--T---TTTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAAa
gi|20 : caaaATATACAGAGAATATAA-----ATTAATAAGAACAGTAATTA--TTAAA-GAATCATG---ATTTTTTTA-TTAAAATTTTTGGTTCTTC
gi|21 : ataATAGATAGAGAAAATAA-----ATGAATAACAAAAGTAAT-A--T---A-GTATCATGTTAATTTT
gi|3 : atcataATATATAGAGAATATCA-----ATAAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAAATTTTTTTTTTTCATTAAAGCATATAAAAATTGGGGTGG-GGTG-G-G-G-GGTTAAANNNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC--C-T-AATTTTATTCATCCCAACAACTACTTTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAA----TTTGTTTGTAAAAATTCAATCATGC---AAGT------GTGA-TTTGT-CAA----A-A-----AA-AAAAGAGGGTCGGTGGGTAGAAAC--T---TTTTTT--AACTTTATTATCAAGTG----C----TTATGTATATA-TCTGCTATGTAGAAA
gi|4 : ATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATTATG---ACTTTTTTAATTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG----------TG-G-GGGTAAACCNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATA-TTTTAT----TTTGTTTGTAAAATATCAACCATGT---AAGT------GTGATTTTGT-CT-----A-A-----AA-AAAACAGGGTTGGTGGGTAGAAAC--T---TTTTTTT-AACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|5 : tcataATATATAGAGAATATAA-----ATTAATTACAAGAGTAAT-A--T---A-GAATCATG---ATTATTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTCAGGGTG-GGGGTGTG-ATGGGT-----------TA-A-ACCTAGCATTC--A-----TTATAAGTCAGAATC--C-C-AATTTTATACATCAAAACAACTACTCTAATACCTCAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GACAGTTG-TGAAAGTAGCAGTGTGTTTTTAT----TTTGTTTATAAAAATTCAACCATGT---AAGTCACACAGTGATTTTGT-CCA----A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---TTTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|6 : tcataATATAAAGAGAAAATCA-----ATCAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAA-TTTTCGTTTCTTCATTAAAGCATAAAAAAAT-----GGG-GGGG-G-G-G-GGGTAAAACTTTTTTTA-A-GCCTAACATTCTAACTTCCTGATAAGTCTGAATC--C-T-AATTTTATTCATCCTAACAACTACTCTAATACAACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGAAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-C-----GA-AAAAGAGGGTC-GTTGGTAGAAACTTT---TTTTTTTTAACTTTATTATCAAGTG----C----TTATTTATATA-TCTGCTGTATAAAAA
gi|7 : cataATATATAGAGAATATAATATATATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATATTTTTA-TTAACATTTTTGTTTCTTCACTAAAA--------------GGGGG-GGGG-GT-------TAAAAAATTTTCTA-A-ACTAAGCATTCTAACTTCCAAATAAGTCTGAATC--C-T-AATTTTATTCATTACAACAACTACTCTAATACCACAAA-----CAAGTTTT-CTGAAT-------------G--------A-ATGT--GAAAGTGG-TTAAAGGAGCATTTTA-TTTTAT----TTTGTTTGTAAAAATCCAACCATGT---AAGT------GTGATTTTGTCC------ACA-----AA-AAAACAGGGTCGGTGGGAAGAAAC--A---TTTTTTTAAACTTTATTATCAAGTG----T----TTATGTAGATA-TTTGCTGTATAGAAA
gi|8 : cataATAGATAGAGAAAATAA-----ATGAAAAACAAAATTAAT-AATT---ATGTATCATG---TTAATTTTA-TTGAA-TTTTCATTTCTT--TCAAAAAATATAATTTTT----------------------TAAACCTTTTTTTTTATACCTAACATTCTCACTATCTAATAAATCTTAATCTAC-T-A-TTTTAAT-ACCAAAAAAAAAATT---ATATCTCAA------TA----TT-TAAAAT-------------G--------ATAT-T--GAAAATGG-TGAAAGTAGCATTCTA-TTTTATTTTATTTGTTTGTAAAAATCTAATTATGA---AACC------ATGATTTTGT-C------C-A-----AATAAAACAGGATTGGTGTGTAGGAAC--TTAATTTTTTTAAAC------ATTCAGTG----CATAATTATGTAGGTG-TTAGCAGTATAGAA
gi|9 : cataATATATTGAGAA-------------AATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG----------TG-G-GGGTAAANNNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N-N-NNNNNNNNCTAATACCACAA-----------------A-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATATTTTTAT----ATTGTTAGTAAAAACTCAAGGATGT---AAGT------GTGACTTTGT-CCA----A-A-----AA-GAAACAGGATTGGTGGGTAAAAAC--T---TTTTTTT-AACTTAATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
Alignments
lowQualScore : 777777777777777777777777777777777777777777 1111111111111111111111 1 222222
lowQualScore : 2 77777 1 3 44 555 3 555 3 444444444444444444444444444444444444444444 55 1 0 3333 33 2 2 1 55555 2 3333333333333333333333 2 55 2 7 5555 444 777777 2 5 666666 2 66666 5 0 888888 2 5 5555 5555 2
lowQualScore : . ..... . . .. ... . ... . .......................................... .. . . .... .. . . . ..... . ...................... . .. . . .... ... ...... . . ...... . ..... . . ...... . . .... .... .
lowQualScore : 8 77777 5 1 22 444 1 444 3 555555555555555555555555555555555555555555 00 0 3 1111 99 7 7 8 99999 4 4444444444444444444444 4 66 4 1 3333 444 222222 6 0 999999 5 22222 0 1 555555 7 9 7777 7777 7
consensus : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTT--------TT--AAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
Reference ( family-715 ) : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTT--------TT--AAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|1 : ATATATAGAGAATATCA-----ATTAATAACAAGAATAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCCTTTCTTCATTAAAGCATATAAAAGTTGGGGGGGAGGGG-GTGCG-GGGTAAACCTTTTT--------TT--TAACCTAGCATTCTAACTTCCGTATAAGTCTGAATC--C-T-AATTTTATTCATCCCAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-A-----AA-AAAAGAGGGTCGGTGGGTAAAAAC--T---T-TCTTTTTAGCCTTATTATCAAGTG----C----TTATGTATATA-TCTGCTGTATAAAAA
gi|10 : atTTTATTCATCACAACAACTACTCTAATGTCACAAAACAAATAAATTAT-CTGAAT-------------G--------A-ATATATGAAAGTGG-TGAAAGTAGCTTTCTATTTT-AT----TTTGTTAGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-CTGAAAAA-A-----AA-AAAATAGGGTCGGTGGGTAG------------------AAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGGTGTATAGAAA
gi|11 : ca-T-AATTTCATTAATCACAACAACTACTCTAATAACACAAA-----TAAGTTTT-CTAAAT-------------G--------A-AT----------GG-TGAAAGTAGCATTCTATTTT-AT----TTTGTTTGTATTAATTCAACCACGT---AAGT------GTGATTCTGT-C------A-ACAACAAA-AAAACAGGATTGCTGGGTAGAAAC--C---C-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|12 : TTTATTCATCACAACAACTATTCTAATACCACAAA-----TAACTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGGTTGAAAGTAACATTCTA-TTTTAT----TTTGTTTGTAAAAATTCAACCATGT---TAGT------GTGAGTTTGT-CT-----A-A-----AA-AAAACAGGGTCGGTGGTTAGAAAC--------TTTTTTAAACTTTATTATCAGGTG----C----TTATGTAAATATTTTGCTGTATAGAAA
gi|13 : TAAATCTGAATC--C-T-AATTTAATTCATCTAAACAACTACACTAAAACCACAAA-----TAAGTTTT-CTAAAT-------------G--------A-ATAT--GAAAGTGG-TGAA---AGCATTCTA-TTTTAT----TTTGTTT------ATTCAAACGCGT---AAGT------GTGATTTTGT-C------A----------------------GTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATT-TCTGCTCTATAGAAA
gi|14 : CAAATATTCTAATACCACGAA-----TATTTTTTTCTGAAT-------------ATTTAAAATG-ATATT-GAAAATGG-TGAAAGTAGCATTCTA-----AT----TT-GTTTGTAAAAATCTAACTATGA---AACC------GTGGTTTTGT-C------C-A-----AATAAAACAGGGTCGGTGTGTAGCAAC--T---TATTTTTT----TTGAATATTCAGTGCATAC----TTATGTAGGTA-TTTGCGGTATAGAA
gi|15 : TCTCAACAACTACTCTAATACTACAAA-----TAAGTTTT-CTGAAC-------------G--------A-GTAT--GAAAGTGG-TGAAAGTAGCATTCTA-TTTTAT----TTTGTTTGTAAGAATTCAAGCATGT---AAGT------GTGATTTTGTAA------A-A-----AA-AAAACATGGTCAGTGGGTAG------------------AAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
gi|16 : ATATATAGAGAAAATAA-----ATGATTAATATAAGTAAT-A--------GTATTGTG---TTTTTTTTA-ATTAAATTTCTGTTTCATTATTAAAGCATATAAAAGT--------------------------GCTTTTTTACCTTTTTTT--ACACCAAATATTCTCACTTTCTTATAAGTCTGAATC--CTT-AATATTTTTAATT---ACAACTATTCTAATA
gi|17 : gtcatgATATATAGAGAATATAA-----ATTAATAACAAAAGTTGT-A--T---A-GTATCATG---ATTTTTACA-TTAAAATTTTCATTTCTTCATTAAAGCATACACAAGTT-------------GTG----------TTTTTTT--------TT--AAACCAAGCATTCTAAATT---------TCTGAATC--C-T-AAT
gi|18 : gtcataGAATC--C-TTAATATTTTTAATTACAGC---TATTCCAATAATACAAA-----TATGTTTT-CTTAATTAACTTTTAAAACG--------A-A-AT--GAAAGTGG-TG--AGTAGCATTCTA-TTTTAT----TTT-----------------TATGA---AAGT------GTGATTTTAT-C------A-A-----CA-AAAA
gi|19 : TTTAACTTCCTAATAAGTCT-AATC--C-T-ATATTCATTCATCACAACAACTACTCTTATACCACAAA-----TAAGTTTT-CTGAAT-------------A--------A-ATAT--GAAAGTGG-TTGAAGTAG-ATACTAaaacg
gi|2 : tctttaatggcctaatgtaagaaaATATATAGAGAATATAA-----ATTAATAACAAGAGTTAT-A--T---A-GATTCATG---ATTTTTTTA-TTAAAATTTTCGTCTCTTCATTAAAGCAAATAAAAGTTGGGGGTG-GAGGTGTG-G-GGGGNNNNNNNNNN--------NN--NNNNNNNNNNNNNNNNNNNNNNNNT----------C--C-T-TATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAGG--ACGTTCTAATTTTAT----TTTGTTTGTAAAAATTCAACCATGTTGTAATT------GTGATTTTGT-CCAC---A-A-----AA-AAAACAGGGTCGGTTGGTAGAAAC--T---T-TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAAa
gi|20 : caaaATATACAGAGAATATAA-----ATTAATAAGAACAGTAATTA--TTAAA-GAATCATG---ATTTTTTTA-TTAAAATTTTTGGTTCTTC
gi|21 : ataATAGATAGAGAAAATAA-----ATGAATAACAAAAGTAAT-A--T---A-GTATCATGTTAATTTT
gi|3 : atcataATATATAGAGAATATCA-----ATAAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAAATTTTTTTTTTTCATTAAAGCATATAAAAATTGGGGTGG-GGTG-G-G-G-GGTTAAANNNNNNN--------NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC--C-T-AATTTTATTCATCCCAACAACTACTTTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAA----TTTGTTTGTAAAAATTCAATCATGC---AAGT------GTGA-TTTGT-CAA----A-A-----AA-AAAAGAGGGTCGGTGGGTAGAAAC--T---T-TTTTT--AACTTTATTATCAAGTG----C----TTATGTATATA-TCTGCTATGTAGAAA
gi|4 : ATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATTATG---ACTTTTTTAATTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG----------TG-G-GGGTAAACCNNNNN--------NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATA-TTTTAT----TTTGTTTGTAAAATATCAACCATGT---AAGT------GTGATTTTGT-CT-----A-A-----AA-AAAACAGGGTTGGTGGGTAGAAAC--T---T-TTTTTT-AACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|5 : tcataATATATAGAGAATATAA-----ATTAATTACAAGAGTAAT-A--T---A-GAATCATG---ATTATTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTCAGGGTG-GGGGTGTG-ATGGGT-------------------T--AAACCTAGCATTC--A-----TTATAAGTCAGAATC--C-C-AATTTTATACATCAAAACAACTACTCTAATACCTCAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GACAGTTG-TGAAAGTAGCAGTGTGTTTTTAT----TTTGTTTATAAAAATTCAACCATGT---AAGTCACACAGTGATTTTGT-CCA----A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|6 : tcataATATAAAGAGAAAATCA-----ATCAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAA-TTTTCGTTTCTTCATTAAAGCATAAAAAAAT-----GGG-GGGG-G-G-G-GGGTAAAACTTTTT--------TT--AAGCCTAACATTCTAACTTCCTGATAAGTCTGAATC--C-T-AATTTTATTCATCCTAACAACTACTCTAATACAACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGAAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-C-----GA-AAAAGAGGGTC-GTTGGTAGAAACTTT---T-TTTTTTTAACTTTATTATCAAGTG----C----TTATTTATATA-TCTGCTGTATAAAAA
gi|7 : cataATATATAGAGAATATAATATATATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATATTTTTA-TTAACATTTTTGTTTCTTCACTAAAA--------------GGGGG-GGGG-GT-------TAAAAAATTTT--------CT--AAACTAAGCATTCTAACTTCCAAATAAGTCTGAATC--C-T-AATTTTATTCATTACAACAACTACTCTAATACCACAAA-----CAAGTTTT-CTGAAT-------------G--------A-ATGT--GAAAGTGG-TTAAAGGAGCATTTTA-TTTTAT----TTTGTTTGTAAAAATCCAACCATGT---AAGT------GTGATTTTGTCC------ACA-----AA-AAAACAGGGTCGGTGGGAAGAAAC--A---T-TTTTTTAAACTTTATTATCAAGTG----T----TTATGTAGATA-TTTGCTGTATAGAAA
gi|8 : cataATAGATAGAGAAAATAA-----ATGAAAAACAAAATTAAT-AATT---ATGTATCATG---TTAATTTTA-TTGAA-TTTTCATTTCTT--TCAAAAAATATAATTTTT----------------------TAAACCTTTTT--------TTTTATACCTAACATTCTCACTATCTAATAAATCTTAATCTAC-T-A-TTTTAAT-ACCAAAAAAAAAATT---ATATCTCAA------TA----TT-TAAAAT-------------G--------ATAT-T--GAAAATGG-TGAAAGTAGCATTCTA-TTTTATTTTATTTGTTTGTAAAAATCTAATTATGA---AACC------ATGATTTTGT-C------C-A-----AATAAAACAGGATTGGTGTGTAGGAAC--TTAAT-TTTTTTAAAC------ATTCAGTG----CATAATTATGTAGGTG-TTAGCAGTATAGAA
gi|9 : cataATATATTGAGAA-------------AATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG----------TG-G-GGG--------------------T--AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N-N-NNNNNNNNNNNNNNNNNNNNCTA-----ATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATATTTTTAT----ATTGTTAGTAAAAACTCAAGGATGT---AAGT------GTGACTTTGT-CCA----A-A-----AA-GAAACAGGATTGGTGGGTAAAAAC--T---T-TTTTTT-AACTTAATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
Alignments
lowQualScore : 777777777777777777777777777777777777777777 1111111111111111111111 1 222222
lowQualScore : 2 77777 1 3 44 555 3 555 3 444444444444444444444444444444444444444444 55 1 0 3333 33 2 2 1 55555 2 3333333333333333333333 2 55 2 7 5555 444 777777 2 5 666666 2 66666 5 0 888888 2 5 5555 5555 2
lowQualScore : . ..... . . .. ... . ... . .......................................... .. . . .... .. . . . ..... . ...................... . .. . . .... ... ...... . . ...... . ..... . . ...... . . .... .... .
lowQualScore : 8 77777 5 1 22 444 1 444 3 555555555555555555555555555555555555555555 00 0 3 1111 99 7 7 8 99999 4 4444444444444444444444 4 66 4 1 3333 444 222222 6 0 999999 5 22222 0 1 555555 7 9 7777 7777 7
consensus : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTT--------TT--AAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
Reference ( family-715 ) : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTT--------TT--AAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|1 : ATATATAGAGAATATCA-----ATTAATAACAAGAATAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCCTTTCTTCATTAAAGCATATAAAAGTTGGGGGGGAGGGG-GTGCG-GGGTAAACCTTTTT--------TT--TAACCTAGCATTCTAACTTCCGTATAAGTCTGAATC--C-T-AATTTTATTCATCCCAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-A-----AA-AAAAGAGGGTCGGTGGGTAAAAAC--T---T-TCTTTTTAGCCTTATTATCAAGTG----C----TTATGTATATA-TCTGCTGTATAAAAA
gi|10 : atTTTATTCATCACAACAACTACTCTAATGTCACAAAACAAATAAATTAT-CTGAAT-------------G--------A-ATATATGAAAGTGG-TGAAAGTAGCTTTCTATTTT-AT----TTTGTTAGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-CTGAAAAA-A-----AA-AAAATAGGGTCGGTGGGTAG------------------AAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGGTGTATAGAAA
gi|11 : ca-T-AATTTCATTAATCACAACAACTACTCTAATAACACAAA-----TAAGTTTT-CTAAAT-------------G--------A-AT----------GG-TGAAAGTAGCATTCTATTTT-AT----TTTGTTTGTATTAATTCAACCACGT---AAGT------GTGATTCTGT-C------A-ACAACAAA-AAAACAGGATTGCTGGGTAGAAAC--C---C-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|12 : TTTATTCATCACAACAACTATTCTAATACCACAAA-----TAACTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGGTTGAAAGTAACATTCTA-TTTTAT----TTTGTTTGTAAAAATTCAACCATGT---TAGT------GTGAGTTTGT-CT-----A-A-----AA-AAAACAGGGTCGGTGGTTAGAAAC--------TTTTTTAAACTTTATTATCAGGTG----C----TTATGTAAATATTTTGCTGTATAGAAA
gi|13 : TAAATCTGAATC--C-T-AATTTAATTCATCTAAACAACTACACTAAAACCACAAA-----TAAGTTTT-CTAAAT-------------G--------A-ATAT--GAAAGTGG-TGAA---AGCATTCTA-TTTTAT----TTTGTTT------ATTCAAACGCGT---AAGT------GTGATTTTGT-C------A----------------------GTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATT-TCTGCTCTATAGAAA
gi|14 : CAAATATTCTAATACCACGAA-----TATTTTTTTCTGAAT-------------ATTTAAAATG-ATATT-GAAAATGG-TGAAAGTAGCATTCTA-----AT----TT-GTTTGTAAAAATCTAACTATGA---AACC------GTGGTTTTGT-C------C-A-----AATAAAACAGGGTCGGTGTGTAGCAAC--T---TATTTTTT----TTGAATATTCAGTGCATAC----TTATGTAGGTA-TTTGCGGTATAGAA
gi|15 : TCTCAACAACTACTCTAATACTACAAA-----TAAGTTTT-CTGAAC-------------G--------A-GTAT--GAAAGTGG-TGAAAGTAGCATTCTA-TTTTAT----TTTGTTTGTAAGAATTCAAGCATGT---AAGT------GTGATTTTGTAA------A-A-----AA-AAAACATGGTCAGTGGGTAG------------------AAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
gi|16 : ATATATAGAGAAAATAA-----ATGATTAATATAAGTAAT-A--------GTATTGTG---TTTTTTTTA-ATTAAATTTCTGTTTCATTATTAAAGCATATAAAAGT--------------------------GCTTTTTTACCTTTTTTT--ACACCAAATATTCTCACTTTCTTATAAGTCTGAATC--CTT-AATATTTTTAATT---ACAACTATTCTAATA
gi|17 : gtcatgATATATAGAGAATATAA-----ATTAATAACAAAAGTTGT-A--T---A-GTATCATG---ATTTTTACA-TTAAAATTTTCATTTCTTCATTAAAGCATACACAAGTT-------------GTG----------TTTTTTT--------TT--AAACCAAGCATTCTAAATT---------TCTGAATC--C-T-AAT
gi|18 : gtcataGAATC--C-TTAATATTTTTAATTACAGC---TATTCCAATAATACAAA-----TATGTTTT-CTTAATTAACTTTTAAAACG--------A-A-AT--GAAAGTGG-TG--AGTAGCATTCTA-TTTTAT----TTT-----------------TATGA---AAGT------GTGATTTTAT-C------A-A-----CA-AAAA
gi|19 : TTTAACTTCCTAATAAGTCT-AATC--C-T-ATATTCATTCATCACAACAACTACTCTTATACCACAAA-----TAAGTTTT-CTGAAT-------------A--------A-ATAT--GAAAGTGG-TTGAAGTAG-ATACTAaaacg
gi|2 : tctttaatggcctaatgtaagaaaATATATAGAGAATATAA-----ATTAATAACAAGAGTTAT-A--T---A-GATTCATG---ATTTTTTTA-TTAAAATTTTCGTCTCTTCATTAAAGCAAATAAAAGTTGGGGGTG-GAGGTGTG-G-GGGGNNNNNNNNNN--------NN--NNNNNNNNNNNNNNNNNNNNNNNNT----------C--C-T-TATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAGG--ACGTTCTAATTTTAT----TTTGTTTGTAAAAATTCAACCATGTTGTAATT------GTGATTTTGT-CCAC---A-A-----AA-AAAACAGGGTCGGTTGGTAGAAAC--T---T-TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAAa
gi|20 : caaaATATACAGAGAATATAA-----ATTAATAAGAACAGTAATTA--TTAAA-GAATCATG---ATTTTTTTA-TTAAAATTTTTGGTTCTTC
gi|21 : ataATAGATAGAGAAAATAA-----ATGAATAACAAAAGTAAT-A--T---A-GTATCATGTTAATTTT
gi|3 : atcataATATATAGAGAATATCA-----ATAAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAAATTTTTTTTTTTCATTAAAGCATATAAAAATTGGGGTGG-GGTG-G-G-G-GGTTAAANNNNNNN--------NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC--C-T-AATTTTATTCATCCCAACAACTACTTTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAA----TTTGTTTGTAAAAATTCAATCATGC---AAGT------GTGA-TTTGT-CAA----A-A-----AA-AAAAGAGGGTCGGTGGGTAGAAAC--T---T-TTTTT--AACTTTATTATCAAGTG----C----TTATGTATATA-TCTGCTATGTAGAAA
gi|4 : ATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATTATG---ACTTTTTTAATTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG----------TG-G-GGGTAAACCNNNNN--------NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATA-TTTTAT----TTTGTTTGTAAAATATCAACCATGT---AAGT------GTGATTTTGT-CT-----A-A-----AA-AAAACAGGGTTGGTGGGTAGAAAC--T---T-TTTTTT-AACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|5 : tcataATATATAGAGAATATAA-----ATTAATTACAAGAGTAAT-A--T---A-GAATCATG---ATTATTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTCAGGGTG-GGGGTGTG-ATGGGT-------------------T--AAACCTAGCATTC--A-----TTATAAGTCAGAATC--C-C-AATTTTATACATCAAAACAACTACTCTAATACCTCAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GACAGTTG-TGAAAGTAGCAGTGTGTTTTTAT----TTTGTTTATAAAAATTCAACCATGT---AAGTCACACAGTGATTTTGT-CCA----A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|6 : tcataATATAAAGAGAAAATCA-----ATCAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAA-TTTTCGTTTCTTCATTAAAGCATAAAAAAAT-----GGG-GGGG-G-G-G-GGGTAAAACTTTTT--------TT--AAGCCTAACATTCTAACTTCCTGATAAGTCTGAATC--C-T-AATTTTATTCATCCTAACAACTACTCTAATACAACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGAAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-C-----GA-AAAAGAGGGTC-GTTGGTAGAAACTTT---T-TTTTTTTAACTTTATTATCAAGTG----C----TTATTTATATA-TCTGCTGTATAAAAA
gi|7 : cataATATATAGAGAATATAATATATATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATATTTTTA-TTAACATTTTTGTTTCTTCACTAAAA--------------GGGGG-GGGG-GT-------TAAAAAATTTT--------CT--AAACTAAGCATTCTAACTTCCAAATAAGTCTGAATC--C-T-AATTTTATTCATTACAACAACTACTCTAATACCACAAA-----CAAGTTTT-CTGAAT-------------G--------A-ATGT--GAAAGTGG-TTAAAGGAGCATTTTA-TTTTAT----TTTGTTTGTAAAAATCCAACCATGT---AAGT------GTGATTTTGTCC------ACA-----AA-AAAACAGGGTCGGTGGGAAGAAAC--A---T-TTTTTTAAACTTTATTATCAAGTG----T----TTATGTAGATA-TTTGCTGTATAGAAA
gi|8 : cataATAGATAGAGAAAATAA-----ATGAAAAACAAAATTAAT-AATT---ATGTATCATG---TTAATTTTA-TTGAA-TTTTCATTTCTT--TCAAAAAATATAATTTTT----------------------TAAACCTTTTT--------TTTTATACCTAACATTCTCACTATCTAATAAATCTTAATCTAC-T-A-TTTTAAT-ACCAAAAAAAAAATT---ATATCTCAA------TA----TT-TAAAAT-------------G--------ATAT-T--GAAAATGG-TGAAAGTAGCATTCTA-TTTTATTTTATTTGTTTGTAAAAATCTAATTATGA---AACC------ATGATTTTGT-C------C-A-----AATAAAACAGGATTGGTGTGTAGGAAC--TTAAT-TTTTTTAAAC------ATTCAGTG----CATAATTATGTAGGTG-TTAGCAGTATAGAA
gi|9 : cataATATATTGAGAA-------------AATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGG----------TG-G-GGG--------------------T--AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N-N-NNNNNNNNNNNNNNNNNNNNCTA-----ATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATATTTTTAT----ATTGTTAGTAAAAACTCAAGGATGT---AAGT------GTGACTTTGT-CCA----A-A-----AA-GAAACAGGATTGGTGGGTAAAAAC--T---T-TTTTTT-AACTTAATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
blockSeqs : A TATAT G T AT TAA T TTA A TGGGGGTGGAGGTGTGGGGGGNNNNNNNNNN TT A TCTT TA T T A ACAAA T TAACTTTTAAAACG T AT T T TTTA TGT CACACA T A TGAAAA C CAACA T TTAA A A CATA ATAA T
blockSeqs : T . T . . . . . . TGGGGTGGGGTGGGGGGTTAAANNNNNNN . A CCTA . . . A . . ATTTAAAAT . T . T . . . T C CAC . . T TTT . A . . .
blockSeqs : T . T . . . . . . GGGGGGGGGGGGGTAAAACTTTTT . N NNNN . . . A . . G . . . A . . . G . AA . . . C . A . . .
blockSeqs : T . T . . . . . . TGGGGTGGGGGTAAACCNNNNN . N NNNN . . . T . . G . . . T . . . T . CA . . . T . A . . .
blockSeqs : A . G . . . . . . TCAGGGTGGGGGTGTGATGGGT . N NNNN . . . T . . G . . . T . . . T . CA . . . T . A . . .
blockSeqs : T . A . . . . . . GGGGGGGGGGTTAAAAAATTTT . T CCTG . . . A . . G . . . T . . . T . T . . . T . A . . .
blockSeqs : T . T . . . . . . GCTTTTTTACCTTTTT . T CCAA . . . A . . G . . . T . . . T . T . . . T . A . . .
blockSeqs : T . T . . . . . . TTAAACCTTTTT . A TCTA . . . A . . A . . . . . . . T . . . . . T . T . . .
blockSeqs : A . C . . . . . . TGTGTTTTTTT . T NNNN . . . C . . G . . . . . . . T . . . . . T . A . . .
blockSeqs : T . T . . . . . . TGGGGTGGGGG . N TT . . . A . . G . . . . . . . T . . . . . A . A . . .
blockSeqs : A . G . . . . . . . . . . A . . G . . . . . . . T . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . C . . G . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . A . . G . . . . . . . C . . . . . . . . . . .
blockSeqs : . . A . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : N . . G . . . . . . . . . . . . .
blockSeqs : . . . G . . .
blockSeqCons : TGGGGTGGGGGTAAACTTTTT*********************
originalCons : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGGGG-GGGG-GTG-G-GGGTAAACCTTTTT--------TT--AAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
finalCons : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTGGGGTGGGGGTAAACTTTTT---------------------TT--AAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
Alignments
lowQualScore : 77777777777777777777777777777777777777777777777777 1111111111111111111111 1 222222
lowQualScore : 2 77777 1 3 44 555 3 555 3 3 00000000000000000000000000000000000000000000000000 1 0 3333 33 2 2 1 55555 2 3333333333333333333333 2 55 2 7 5555 444 777777 2 5 666666 2 66666 5 0 888888 2 5 5555 5555 2
lowQualScore : . ..... . . .. ... . ... . . .................................................. . . .... .. . . . ..... . ...................... . .. . . .... ... ...... . . ...... . ..... . . ...... . . .... .... .
lowQualScore : 8 77777 5 1 22 444 1 444 3 6 22222222222222222222222222222222222222222222222222 0 3 1111 99 7 7 8 99999 4 4444444444444444444444 4 66 4 1 3333 444 222222 6 0 999999 5 22222 0 1 555555 7 9 7777 7777 7
consensus : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTT-GGGG---------TG-GGG------G-----T--A-AA-C---TTTTT------TTAAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
Reference ( family-715 ) : NNATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTT-GGGG---------TG-GGG------G-----T--A-AA-C---TTTTT------TTAAACCNAGCATTCTAACTTCCTNATAAGTCTGAATC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-C------A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|1 : ATATATAGAGAATATCA-----ATTAATAACAAGAATAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCCTTTCTTCATTAAAGCATATAAAAGTT-GGGGGGGAGGGGGTGCGGG------G-----T--A-AA-CC--TTTTT------TTTAACCTAGCATTCTAACTTCCGTATAAGTCTGAATC--C-T-AATTTTATTCATCCCAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-A-----AA-AAAAGAGGGTCGGTGGGTAAAAAC--T---T-TCTTTTTAGCCTTATTATCAAGTG----C----TTATGTATATA-TCTGCTGTATAAAAA
gi|10 : atTTTATTCATCACAACAACTACTCTAATGTCACAAAACAAATAAATTAT-CTGAAT-------------G--------A-ATATATGAAAGTGG-TGAAAGTAGCTTTCTATTTT-AT----TTTGTTAGTAAAAATTCAACCATGT---AAGT------GTGATTTTGT-CTGAAAAA-A-----AA-AAAATAGGGTCGGTGGGTAG------------------AAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGGTGTATAGAAA
gi|11 : ca-T-AATTTCATTAATCACAACAACTACTCTAATAACACAAA-----TAAGTTTT-CTAAAT-------------G--------A-AT----------GG-TGAAAGTAGCATTCTATTTT-AT----TTTGTTTGTATTAATTCAACCACGT---AAGT------GTGATTCTGT-C------A-ACAACAAA-AAAACAGGATTGCTGGGTAGAAAC--C---C-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|12 : TTTATTCATCACAACAACTATTCTAATACCACAAA-----TAACTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGGTTGAAAGTAACATTCTA-TTTTAT----TTTGTTTGTAAAAATTCAACCATGT---TAGT------GTGAGTTTGT-CT-----A-A-----AA-AAAACAGGGTCGGTGGTTAGAAAC--------TTTTTTAAACTTTATTATCAGGTG----C----TTATGTAAATATTTTGCTGTATAGAAA
gi|13 : TAAATCTGAATC--C-T-AATTTAATTCATCTAAACAACTACACTAAAACCACAAA-----TAAGTTTT-CTAAAT-------------G--------A-ATAT--GAAAGTGG-TGAA---AGCATTCTA-TTTTAT----TTTGTTT------ATTCAAACGCGT---AAGT------GTGATTTTGT-C------A----------------------GTGGGTAGAAAC--T---T-TTTTTTAAACTTTATTATCAAGTG----C----TTATGTAGATT-TCTGCTCTATAGAAA
gi|14 : CAAATATTCTAATACCACGAA-----TATTTTTTTCTGAAT-------------ATTTAAAATG-ATATT-GAAAATGG-TGAAAGTAGCATTCTA-----AT----TT-GTTTGTAAAAATCTAACTATGA---AACC------GTGGTTTTGT-C------C-A-----AATAAAACAGGGTCGGTGTGTAGCAAC--T---TATTTTTT----TTGAATATTCAGTGCATAC----TTATGTAGGTA-TTTGCGGTATAGAA
gi|15 : TCTCAACAACTACTCTAATACTACAAA-----TAAGTTTT-CTGAAC-------------G--------A-GTAT--GAAAGTGG-TGAAAGTAGCATTCTA-TTTTAT----TTTGTTTGTAAGAATTCAAGCATGT---AAGT------GTGATTTTGTAA------A-A-----AA-AAAACATGGTCAGTGGGTAG------------------AAACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA
gi|16 : ATATATAGAGAAAATAA-----ATGATTAATATAAGTAAT-A--------GTATTGTG---TTTTTTTTA-ATTAAATTTCTGTTTCATTATTAAAGCATATAAAAGT---------------------------GCTTTTT--T-AC-C---TTTTT------TTACACCAAATATTCTCACTTTCTTATAAGTCTGAATC--CTT-AATATTTTTAATT---ACAACTATTCTAATA
gi|17 : gtcatgATATATAGAGAATATAA-----ATTAATAACAAAAGTTGT-A--T---A-GTATCATG---ATTTTTACA-TTAAAATTTTCATTTCTTCATTAAAGCATACACAAGTT-GTGT---------T-----------------------------TTTTT------TTAAACCAAGCATTCTAAATT---------TCTGAATC--C-T-AAT
gi|18 : gtcataGAATC--C-TTAATATTTTTAATTACAGC---TATTCCAATAATACAAA-----TATGTTTT-CTTAATTAACTTTTAAAACG--------A-A-AT--GAAAGTGG-TG--AGTAGCATTCTA-TTTTAT----TTT-----------------TATGA---AAGT------GTGATTTTAT-C------A-A-----CA-AAAA
gi|19 : TTTAACTTCCTAATAAGTCT-AATC--C-T-ATATTCATTCATCACAACAACTACTCTTATACCACAAA-----TAAGTTTT-CTGAAT-------------A--------A-ATAT--GAAAGTGG-TTGAAGTAG-ATACTAaaacg
gi|2 : tctttaatggcctaatgtaagaaaATATATAGAGAATATAA-----ATTAATAACAAGAGTTAT-A--T---A-GATTCATG---ATTTTTTTA-TTAAAATTTTCGTCTCTTCATTAAAGCAAATAAAAGTT-GGGGG--------TG-GAG------G-----T--G------------TGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC--C-T-TATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAGG--ACGTTCTAATTTTAT----TTTGTTTGTAAAAATTCAACCATGTTGTAATT------GTGATTTTGT-CCAC---A-A-----AA-AAAACAGGGTCGGTTGGTAGAAAC--T---T-TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAAa
gi|20 : caaaATATACAGAGAATATAA-----ATTAATAAGAACAGTAATTA--TTAAA-GAATCATG---ATTTTTTTA-TTAAAATTTTTGGTTCTTC
gi|21 : ataATAGATAGAGAAAATAA-----ATGAATAACAAAAGTAAT-A--T---A-GTATCATGTTAATTTT
gi|3 : atcataATATATAGAGAATATCA-----ATAAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAAATTTTTTTTTTTCATTAAAGCATATAAAAATT-GGGG---------TG-GGGTGGGGGG-----TTAA-AN-N---NNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC--C-T-AATTTTATTCATCCCAACAACTACTTTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGTAGCAGTCTATTTTTAA----TTTGTTTGTAAAAATTCAATCATGC---AAGT------GTGA-TTTGT-CAA----A-A-----AA-AAAAGAGGGTCGGTGGGTAGAAAC--T---T-TTTTT--AACTTTATTATCAAGTG----C----TTATGTATATA-TCTGCTATGTAGAAA
gi|4 : ATATATAGAGAATATAA-----ATTAATAACAAGAGTAAT-A--T---A-GAATTATG---ACTTTTTTAATTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTT-GGGG---------TG-GGG------G-----T--A-AA-CC--NNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTC--C-T-AATTTTATTCATCACAACAACTACTCTAATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATA-TTTTAT----TTTGTTTGTAAAATATCAACCATGT---AAGT------GTGATTTTGT-CT-----A-A-----AA-AAAACAGGGTTGGTGGGTAGAAAC--T---T-TTTTTT-AACTTTATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|5 : tcataATATATAGAGAATATAA-----ATTAATTACAAGAGTAAT-A--T---A-GAATCATG---ATTATTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTTCAGGG---------TG-GGG------G-----T--GTGA------TGGG------TTAAACCTAGCATTC--A-----TTATAAGTCAGAATC--C-C-AATTTTATACATCAAAACAACTACTCTAATACCTCAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GACAGTTG-TGAAAGTAGCAGTGTGTTTTTAT----TTTGTTTATAAAAATTCAACCATGT---AAGTCACACAGTGATTTTGT-CCA----A-A-----AA-AAAACAGGGTCGGTGGGTAGAAAC--T---T-TTTTTTAAACTTTATAATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAAA
gi|6 : tcataATATAAAGAGAAAATCA-----ATCAATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAA-TTTTCGTTTCTTCATTAAAGCATAAAAAAATG-GGGG---------GG-GGG------GGG---T--A-AAAC---TTTTT------TTAAGCCTAACATTCTAACTTCCTGATAAGTCTGAATC--C-T-AATTTTATTCATCCTAACAACTACTCTAATACAACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGA-TGAAAGAAGCAGTCTATTTTTAT----TTTGTTTGTAAAAATTCAACCATGT---AAGT------GTGA-TTTGT-C------A-C-----GA-AAAAGAGGGTC-GTTGGTAGAAACTTT---T-TTTTTTTAACTTTATTATCAAGTG----C----TTATTTATATA-TCTGCTGTATAAAAA
gi|7 : cataATATATAGAGAATATAATATATATTAATAACAAGAGTAAT-A--T---A-GAATCATG---ATATTTTTA-TTAACATTTTTGTTTCTTCACTAAAA-------------GGGG---------GG-GGG------G-----TTAA-AA-A---ATTTT------CTAAACTAAGCATTCTAACTTCCAAATAAGTCTGAATC--C-T-AATTTTATTCATTACAACAACTACTCTAATACCACAAA-----CAAGTTTT-CTGAAT-------------G--------A-ATGT--GAAAGTGG-TTAAAGGAGCATTTTA-TTTTAT----TTTGTTTGTAAAAATCCAACCATGT---AAGT------GTGATTTTGTCC------ACA-----AA-AAAACAGGGTCGGTGGGAAGAAAC--A---T-TTTTTTAAACTTTATTATCAAGTG----T----TTATGTAGATA-TTTGCTGTATAGAAA
gi|8 : cataATAGATAGAGAAAATAA-----ATGAAAAACAAAATTAAT-AATT---ATGTATCATG---TTAATTTTA-TTGAA-TTTTCATTTCTT--TCAAAAAATATAATTTTT--------------------------------T--A-AA-CCTTTTTTT------TTATACCTAACATTCTCACTATCTAATAAATCTTAATCTAC-T-A-TTTTAAT-ACCAAAAAAAAAATT---ATATCTCAA------TA----TT-TAAAAT-------------G--------ATAT-T--GAAAATGG-TGAAAGTAGCATTCTA-TTTTATTTTATTTGTTTGTAAAAATCTAATTATGA---AACC------ATGATTTTGT-C------C-A-----AATAAAACAGGATTGGTGTGTAGGAAC--TTAAT-TTTTTTAAAC------ATTCAGTG----CATAATTATGTAGGTG-TTAGCAGTATAGAA
gi|9 : cataATATATTGAGAA-------------AATAACAAGAGTAAT-A--T---A-GAATCATG---ATTTTTTTA-TTAAAATTTTCGTTTCTTCATTAAAGCATATAAAAGTT-GGGG---------TG-GGG------G-----T------------------------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N-N-NNNNNNNNNNNNNNNNNNNNCTA-----ATACCACAAA-----TAAGTTTT-CTGAAT-------------G--------A-ATAT--GAAAGTGG-TGAAAGTAGCATTATATTTTTAT----ATTGTTAGTAAAAACTCAAGGATGT---AAGT------GTGACTTTGT-CCA----A-A-----AA-GAAACAGGATTGGTGGGTAAAAAC--T---T-TTTTTT-AACTTAATTATCAAGTG----C----TTATGTAGATA-TTTGCTGTATAGAA