lowQualScore : 111 1 111111111111 11111111 11111 222 1 222222
lowQualScore : 2 4 111 0 0 999999999 4 555555 1 4 222222222222 8 88 2 33333333 1 1 5 44444 000 3 2 3 0 2 555555
lowQualScore : . . ... . . ......... . ...... . . ............ . .. . ........ . . . ..... ... . . . . . ......
lowQualScore : 7 6 222 2 5 444444444 1 888888 8 2 444444444444 1 44 0 00000000 3 6 2 77777 222 0 7 6 5 5 000000
consensus : ACTGCTACTTACTA--ATATNTCACTG---------ATGTCGCGATACAAACTGC------TACTTACT--------A--ATATNTCACTGATGT-CGCG-ATACAAACTGC--------TATTTACTAAT--ATNTTACTGATGTCG--CGATACAAAC-TGCTCTGCAACGTTA---ATTAATGATTTAAA
Reference ( gi|4 ) : ACTGCTACTCACTA--GTATGTTACTG---------ATGTCGCGGTACAAACTGC------TACTCACT--------A--GTATGTTACTGATGT-TGCG-ATACAAACTGC--------TACTCACTAGT--ACATTACTGATGTCG--GGATGCACAC-TGCTCTGCAACGTTA---ATGAATGATTTAAA
gi|8 : ACTGCTATTTACTA--ATATATCACTG---------ATATCGCAACACAAACTGT------TATTTACT--------A--TTATATCACTGACGT-GGC
gi|11 : actgatatcgcaacacaaACTGCTACTCACTA--GTTTTTTACTG---------ATGTCGCGATACAAACTGC------TGCTCACT--------ctctctctgcaacgttaattaatga
gi|1 : tccacttgattaagttttaatttaactgatgtctgggtacaaATTGCTACTTACTA--ATATATCACTG---------ATGTTGCGATACAAACTTC------TATTTACT--------A--AT
gi|9 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcttatagatgtcgcaatacACTGCTTCTAGCTATAATATATCACTG---------AGGTCGCGATACACATTGC------TACTTATT--------A--ATTAGTTACAGATGT-CGCG-ATACTCATTGC--------TATTCA
gi|3 : ttatatatatctgaaagtcTGCTATTTACTA--ATATATCACTATTTACTAATATATCTCGATACAAACTGC------TATTTACT--------A--ATGTATCACTGATGT-CACATATACAAACTGC--------TATTTACTATT--ATATCACTGATGCTG--CGATGCA-ACTTTCTCTGCAACGTTA---CTGAATGATTTAAA
gi|10 : aatcagctttttgacttatagatgtgacgatacaaaaTGCTA---ACTA---TGTCTTACTG---------ATATCGAAATACAAACTGC------AACTCACT--------T--TTGTTTTACTGATGT-CGCG-ATACAAACTAC--------T----GCTAAT--GTATTAC
gi|2 : aattagTGCTTTTTACTT--ATATATTACTG---------TTGTCGCGATACAAACTGT------TATTTACT--------A--
gi|13 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagcttttatctaattggtgccgcgatacaaagTGCTTTTTACTT--ATATTTTACTG---------TTGTCGCGATACAAACTGT------TATTTA
gi|14 : agcttttatctaattggtgccgcgatacaaagTGCTACTCACAA--GTGTTTT-CTG---------ATGTCGCGATACAAACTGC------T-----CC--------A--ATA-GTCCCTCATGT---CG-ATAa
gi|6 : TTACTA--ATATATCACTG---------ATATTGCGATACAAACTGC------TATTTACT--------A--ATAAATCACTGATGT-CGCG-ATACAAACAGC--------CATTTACTATTAAATATCACTGATATTG--CGATTCAgatgt
gi|12 : tACTA--ATAAATCACTG---------ATGTCGCGACACAAACTGC------TATTTACTTATTTACTA--ATATATCACTGATGT-CGCG-ATACAAACTGC--------TATTTACaaactgatatttactatta
gi|2 : taTATCTAATTG---------GTGCCGCGATACAAAGTGC------TTTTTACT--------T--ATATATTACTGTTGT-CGCG-ATACAAACTGT--------TATTTACTA
gi|13 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagctttTATCTAATTG---------GTGCCGCGATACAAAGTGC------TTTTTACT--------T--ATATTTTACTGTTGT-CGCG-ATACAAACTGT--------TATTTA
gi|1 : agctttTTATAG---------ATGTCGCAATACA--TTGC------TACTTACT--------A--ATATATCACTGATGT-TGCG-ATACAAACTTC--------TATTTACTAAT--a
gi|15 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcTACTG---------ATGTCGCCGTACAAACTGCTAACGTTACTTACT--------A--ATGTTTTACTGCTGT-CGC
gi|8 : ACTG---------ATATCGCAACACAAACTGC------TATTTACT--------A--ATATATCACTGATAT-CGCA-ACACAAACTGT--------TATTTACTATT--ATATCACTGACGT-G------GC-CTC-T-CTCTGCAACGTTA---ATTAATGAca
gi|11 : ACTG---------ATGTCTGGGTACAAACTGC------TACTCACT--------A--GTTTTTTACTGATGT-CGCG-ATACAAACTGC--------TGCTCACT
gi|9 : tccacttgattaagttttaatttaACTGC------TTCTAGCT--------ATAATATATCACTGAGGT-CGCG-ATACACATTGC--------TACTTATTAAT--TAGTTACAGATGTCG--CGATACTCAT-TGCT
gi|10 : ttatatatatctgaaagtcTGC------TA---ACT--------A---TGTCTTACTGATAT-CGAA-ATACAAACTGC--------AACTCACTTTT--GTTTTACTGATGTCG--CGATACAAAC-TACTattca
gi|14 : aattagTGC------TACTCACA--------A--GTGTTTT-CTGATGT-CGCG-ATACAAACTGC--------T--CCAATAGT--CC----CTCATGTCGATAGATGgctaatgtattac
gi|12 : ACT--------A--ATAAATCACTGATGT-CGCG-ACACAAACTGCTATTTACTTATTTACTAAT--ATATCACTGATGTCG--CGATACAAAC-TGCTt
gi|2 : taTATCTAATTGGTGC-CGCG-ATACAAAGTGC--------TTTTTACTTAT--ATATTACTGTTGTCG--CGATACAAAC-TGTTatttac
gi|13 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagctttTATCTAATTGGTGC-CGCG-ATACAAAGTGC--------TTTTTACTTAT--ATTTTACTGTTGTCG--CGATACAAAC-TGTTatttacta
gi|1 : agctttTTATAGATGT-CGCA-ATACA--TTGC--------TACTTACTAAT--ATATCACTGATGTTG--CGATACAAAC-TTCTatttaa
gi|15 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcTACTGATGT-CGCC-GTACAAACTGCTAACGT--TACTTACTAAT--GTTTTACTGCTGTCG--atttactaat
gi|11 : ACTGATGTCTG-G-GTACAAACTGC--------TACTCACTAGT--TTTTTACTGATGTCG--CGATACAAAC-TGCTcca
gi|14 : tccacttgattaagttttaatttaTGC--------TACTCACAAGT--GTTTT-CTGATGTCG--CGATACAAAC-TGCTCgctcact
gi|15 : TACTGATGTCG--CCGTACAAAC-TGCT----AACGTTACTTACTAATGTTTTAcaatagtccctcatgtcgatagatgt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AAATAAAATTATGAATAAACAACTATAGTATATATACAAAACAACAAAATTTACTCAACAGGACAAAATACCGTTATAATAATGTTCTAAGATGTAATCATGTTAACACTGTTCACTTTAAACATCCTTTGTCTTA
Unaligned ( gi|7 ): TACAATATATACAAATTAACGAAATTTTCTCAACATGAAAAAATACCGGTCTAATAATCGGTCTGATAATGTTTGAAGATGTAATTACACTATCACTAACACTTGTCCACTTTACT
Unaligned ( gi|16 ): GATGTAAACGTGTTAACACTGTTCACGTTAATCAGCTTTTGTCTTATAGA
Alignments
lowQualScore : 111 111111111 11111111 11111111 111 11
lowQualScore : 1 000 2 0 1 2 111111111 555 99999999 00000000 00000000 1 3 777 1 1 4 000 11 33 7
lowQualScore : . ... . . . . ......... ... ........ ........ ........ . . ... . . . ... .. .. .
lowQualScore : 0 000 5 9 0 6 444444444 000 33333333 44444444 44444444 0 3 444 0 0 6 000 22 00 0
consensus : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGC-AAACT-TCTCTGCAACGTTAATGAATGATTTAAA
Reference ( family-7146 ) : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATNTTACTGATGTCGCGATAC-AAACT-GCTCTGCAACGTTAATTAATGATTTAAA
gi|1 : CT---TA-TAATGTTCTAA-G---------ATGTAATCGTGTTA-ATACCGTTCA------CTT--T--------AATAAGCTTTTGTCTTATAGATGTCGCA-ATACA--TTGCTACTTACTA--ATATATCACTGATGTTGCGATAC-AAACT-TCT
gi|1 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggcG---------ATGT---CGCAATACA--TTGCT-A------CTTACT--------AATA--------TATCACTGATGTTGCG-ATACAAACTTCTATTTACTA--ATatttactaat
gi|10 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcttataTGCTA------ACTA-TGTCTTACTG---------ATAT---CGAAATACAAACTGCA-A------CTCACT--------TTTG--------TTTTACTGATGTCGCG-ATACAAACTAC----TGCTA--ATGTATTAC
gi|11 : aattagATTTAACTG---------ATGT---CTGGGTACAAACTGCT-A------CTCACT--------AGTT--------TTTTACTGATGTCGCG-ATACAAACTGCTGCTCACT
gi|12 : tccacttgattaagttttaACTAATAAATCACTG---------ATGT---CGCGACACAAACTGCT-A------TTTACTTATTTACTAATA--------TATCACTGATGTCGCG-ATACAAACTGCTATTTAC
gi|13 : taTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TTTTACTGTTGTCGCG-ATACAAACTGTTATTTA
gi|14 : agctttTGCTACT---CACAAGTGTTTT-CTG---------ATGT---CGCGATACAAACTGCT------------CC--------AATA---------GTCCCTCATGTCGa
gi|15 : ACTG---------ATGT---CGCCGTACAAACTGCT-AACGTTACTTACT--------AATG--------TTTTACTGCTGTCGCatagatgt
gi|2 : tTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TATTACTGTTGTCGCG-ATACAAACTGTTATTTACTA--ca
gi|3 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagctttTGCTATT---TACTAATATATCACTATTTACTAATATAT---CTCGATACAAACTGCT-A------TTTACT--------AATG--------TATCACTGATGTCACATATACAAACTGCTATTTACTA--TTATATCACTGATGCTGCGATGC-AACTT-TCTCTGCAACGTTACTGAATGATTTAAA
gi|4 : aatcagctttttgacttatagatgtgacgatacaaaaACTGCTACT---CACTAGTATGTTACTG---------ATGT---CGCGGTACAAACTGCT-A------CTCACT--------AGTA--------TGTTACTGATGTTGCG-ATACAAACTGCTACTCACTA--GTACATTACTGATGTCGGGATGC-ACACT-GCTCTGCAACGTTAATGAATGATTTAAA
gi|6 : T---TACTAATATATCACTG---------ATAT---TGCGATACAAACTGCT-A------TTTACT--------AATA--------AATCACTGATGTCGCG-ATACAAACAGCCATTTACTATTAAATATCACTGATATTGCGATTCAAAACT-G
gi|8 : tACTG---------ATAT---CGCAACACAAACTGCT-A------TTTACT--------AATA--------TATCACTGATATCGCA-ACACAAACTGTTATTTACTA--TTATATCACTGACGTGGC---------CTCTCTCTGCAACGTTAATTAATGAatatttactatta
gi|9 : ACTGCTTCTAGCTA-TAATATATCACTG---------AGGT---CGCGATACACATTGCT-A------CTTATT--------AATT--------AGTTACAGATGTCGCG-ATACTCATTGCTATTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAATAAAATTATGAATAAACAACTATAGTATATATACAAAACAACAAAATTTACTCAACAGGACAAAATACCGTTATAATAATGTTCTAAGATGTAATCATGTTAACACTGTTCACTTTAAACATCCTTTGTCTTA
Unaligned ( gi|7 ): TACAATATATACAAATTAACGAAATTTTCTCAACATGAAAAAATACCGGTCTAATAATCGGTCTGATAATGTTTGAAGATGTAATTACACTATCACTAACACTTGTCCACTTTACT
Unaligned ( gi|16 ): GATGTAAACGTGTTAACACTGTTCACGTTAATCAGCTTTTGTCTTATAGA
Alignments
lowQualScore : 111 111111111 11111111 11111111 1
lowQualScore : 1 000 2 0 1 2 111111111 555 99999999 00000000 00000000 1 3 777 3 11 0
lowQualScore : . ... . . . . ......... ... ........ ........ ........ . . ... . .. .
lowQualScore : 0 000 5 9 0 6 444444444 000 33333333 44444444 44444444 0 3 444 2 22 0
consensus : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
Reference ( family-7146 ) : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
gi|1 : CT---TA-TAATGTTCTAA-G---------ATGTAATCGTGTTA-ATACCGTTCA------CTT--T--------AATAAGCTTTTGTCTTATAGATGTCGCA-ATACA--TTGCTACTTACTA--ATATATCACTGATGTTGCGATACAAACT-TCT
gi|1 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggcG---------ATGT---CGCAATACA--TTGCT-A------CTTACT--------AATA--------TATCACTGATGTTGCG-ATACAAACTTCTATTTACTA--ATatttactaat
gi|10 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcttataTGCTA------ACTA-TGTCTTACTG---------ATAT---CGAAATACAAACTGCA-A------CTCACT--------TTTG--------TTTTACTGATGTCGCG-ATACAAACTAC----TGCTA--ATGTATTAC
gi|11 : aattagATTTAACTG---------ATGT---CTGGGTACAAACTGCT-A------CTCACT--------AGTT--------TTTTACTGATGTCGCG-ATACAAACTGCTGCTCACT
gi|12 : tccacttgattaagttttaACTAATAAATCACTG---------ATGT---CGCGACACAAACTGCT-A------TTTACTTATTTACTAATA--------TATCACTGATGTCGCG-ATACAAACTGCTATTTAC
gi|13 : taTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TTTTACTGTTGTCGCG-ATACAAACTGTTATTTA
gi|14 : agctttTGCTACT---CACAAGTGTTTT-CTG---------ATGT---CGCGATACAAACTGCT------------CC--------AATA---------GTCCCTCATGTCGa
gi|15 : ACTG---------ATGT---CGCCGTACAAACTGCT-AACGTTACTTACT--------AATG--------TTTTACTGCTGTCGCatagatgt
gi|2 : tTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TATTACTGTTGTCGCG-ATACAAACTGTTATTTACTA--ca
gi|3 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagctttTGCTATT---TACTAATATATCACTATTTACTAATATAT---CTCGATACAAACTGCT-A------TTTACT--------AATG--------TATCACTGATGTCACATATACAAACTGCTATTTACTA--TTATATCACTGATGCTGCGATGCAACTT-TCTCTGCAACGTTACTGAATGATTTAAA
gi|4 : aatcagctttttgacttatagatgtgacgatacaaaaACTGCTACT---CACTAGTATGTTACTG---------ATGT---CGCGGTACAAACTGCT-A------CTCACT--------AGTA--------TGTTACTGATGTTGCG-ATACAAACTGCTACTCACTA--GTACATTACTGATGTCGGGATGCACACT-GCTCTGCAACGTTAATGAATGATTTAAA
gi|6 : T---TACTAATATATCACTG---------ATAT---TGCGATACAAACTGCT-A------TTTACT--------AATA--------AATCACTGATGTCGCG-ATACAAACAGCCATTTACTATTAAATATCACTGATATTGCGATTCAAA
gi|8 : tACTG---------ATAT---CGCAACACAAACTGCT-A------TTTACT--------AATA--------TATCACTGATATCGCA-ACACAAACTGTTATTTACTA--TTATATCACTGACGTGGC--------CTCTCTCTGCAACGTTAATTAATGAactgatatttactatta
gi|9 : ACTGCTTCTAGCTA-TAATATATCACTG---------AGGT---CGCGATACACATTGCT-A------CTTATT--------AATT--------AGTTACAGATGTCGCG-ATACTCATTGCTATTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAATAAAATTATGAATAAACAACTATAGTATATATACAAAACAACAAAATTTACTCAACAGGACAAAATACCGTTATAATAATGTTCTAAGATGTAATCATGTTAACACTGTTCACTTTAAACATCCTTTGTCTTA
Unaligned ( gi|7 ): TACAATATATACAAATTAACGAAATTTTCTCAACATGAAAAAATACCGGTCTAATAATCGGTCTGATAATGTTTGAAGATGTAATTACACTATCACTAACACTTGTCCACTTTACT
Unaligned ( gi|16 ): GATGTAAACGTGTTAACACTGTTCACGTTAATCAGCTTTTGTCTTATAGA
Alignments
lowQualScore : 111 111111111 11111111 11111111 1
lowQualScore : 1 000 2 0 1 2 111111111 555 99999999 00000000 00000000 1 3 777 3 11 0
lowQualScore : . ... . . . . ......... ... ........ ........ ........ . . ... . .. .
lowQualScore : 0 000 5 9 0 6 444444444 000 33333333 44444444 44444444 0 3 444 2 22 0
consensus : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
Reference ( family-7146 ) : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
gi|1 : CT---TA-TAATGTTCTAA-G---------ATGTAATCGTGTTA-ATACCGTTCA------CTT--T--------AATAAGCTTTTGTCTTATAGATGTCGCA-ATACA--TTGCTACTTACTA--ATATATCACTGATGTTGCGATACAAACT-TCT
gi|1 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggcG---------ATGT---CGCAATACA--TTGCT-A------CTTACT--------AATA--------TATCACTGATGTTGCG-ATACAAACTTCTATTTACTA--ATatttactaat
gi|10 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcttataTGCTA------ACTA-TGTCTTACTG---------ATAT---CGAAATACAAACTGCA-A------CTCACT--------TTTG--------TTTTACTGATGTCGCG-ATACAAACTAC----TGCTA--ATGTATTAC
gi|11 : aattagATTTAACTG---------ATGT---CTGGGTACAAACTGCT-A------CTCACT--------AGTT--------TTTTACTGATGTCGCG-ATACAAACTGCTGCTCACT
gi|12 : tccacttgattaagttttaACTAATAAATCACTG---------ATGT---CGCGACACAAACTGCT-A------TTTACTTATTTACTAATA--------TATCACTGATGTCGCG-ATACAAACTGCTATTTAC
gi|13 : taTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TTTTACTGTTGTCGCG-ATACAAACTGTTATTTA
gi|14 : agctttTGCTACT---CACAAGTGTTTT-CTG---------ATGT---CGCGATACAAACTGCT------------CC--------AATA---------GTCCCTCATGTCGa
gi|15 : ACTG---------ATGT---CGCCGTACAAACTGCT-AACGTTACTTACT--------AATG--------TTTTACTGCTGTCGCatagatgt
gi|2 : tTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TATTACTGTTGTCGCG-ATACAAACTGTTATTTACTA--ca
gi|3 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagctttTGCTATT---TACTAATATATCACTATTTACTAATATAT---CTCGATACAAACTGCT-A------TTTACT--------AATG--------TATCACTGATGTCACATATACAAACTGCTATTTACTA--TTATATCACTGATGCTGCGATGCAACTT-TCTCTGCAACGTTACTGAATGATTTAAA
gi|4 : aatcagctttttgacttatagatgtgacgatacaaaaACTGCTACT---CACTAGTATGTTACTG---------ATGT---CGCGGTACAAACTGCT-A------CTCACT--------AGTA--------TGTTACTGATGTTGCG-ATACAAACTGCTACTCACTA--GTACATTACTGATGTCGGGATGCACACT-GCTCTGCAACGTTAATGAATGATTTAAA
gi|6 : T---TACTAATATATCACTG---------ATAT---TGCGATACAAACTGCT-A------TTTACT--------AATA--------AATCACTGATGTCGCG-ATACAAACAGCCATTTACTATTAAATATCACTGATATTGCGATTCAAA
gi|8 : tACTG---------ATAT---CGCAACACAAACTGCT-A------TTTACT--------AATA--------TATCACTGATATCGCA-ACACAAACTGTTATTTACTA--TTATATCACTGACGTGGC--------CTCTCTCTGCAACGTTAATTAATGAactgatatttactatta
gi|9 : ACTGCTTCTAGCTA-TAATATATCACTG---------AGGT---CGCGATACACATTGCT-A------CTTATT--------AATT--------AGTTACAGATGTCGCG-ATACTCATTGCTATTCA
blockSeqs : C AGC C C T TTTACTAAT . AACGTTA TATTTACT . A T TTA G AC C
blockSeqs : T . C T A . . A . . T . A G CA .
blockSeqs : C . C A C . . A . . T . A T AA .
blockSeqs : C . C C A . . A . . A . T . .
blockSeqs : . . C T T . . A . . T . G
blockSeqs : . C C A . . T . . G . T
blockSeqs : . A C . . T . . T .
blockSeqs : G T . . A . . A .
blockSeqs : A C . . A . . A .
blockSeqs : A C . . A . . G .
blockSeqs : . . A . . A .
blockSeqs : . . A . . A
blockSeqs : . . . . . G
blockSeqCons : *** A******* ********
originalCons : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
finalCons : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCTA-------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAATAAAATTATGAATAAACAACTATAGTATATATACAAAACAACAAAATTTACTCAACAGGACAAAATACCGTTATAATAATGTTCTAAGATGTAATCATGTTAACACTGTTCACTTTAAACATCCTTTGTCTTA
Unaligned ( gi|7 ): TACAATATATACAAATTAACGAAATTTTCTCAACATGAAAAAATACCGGTCTAATAATCGGTCTGATAATGTTTGAAGATGTAATTACACTATCACTAACACTTGTCCACTTTACT
Unaligned ( gi|16 ): GATGTAAACGTGTTAACACTGTTCACGTTAATCAGCTTTTGTCTTATAGA
Alignments
lowQualScore : 111 111111111 11111111 11111111 1
lowQualScore : 1 000 2 0 1 2 111111111 555 99999999 00000000 00000000 1 3 777 3 11 0
lowQualScore : . ... . . . . ......... ... ........ ........ ........ . . ... . .. .
lowQualScore : 0 000 5 9 0 6 444444444 000 33333333 44444444 44444444 0 3 444 2 22 0
consensus : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
Reference ( family-7146 ) : ACTGCTACT---TACTAATATNTCACTG---------ATGT---CGCGATACAAACTGCT-A------CTTACT--------AATA--------TNTCACTGATGTCGCG-ATACAAACTGCTATTTACTA--ATATATCACTGATGTTGCGATGCAAACT-TCTCTGCAACGTTAATGAATGATTTAAA
gi|1 : CT---TA-TAATGTTCTAA-G---------ATGTAATCGTGTTA-ATACCGTTCA------CTT--T--------AATAAGCTTTTGTCTTATAGATGTCGCA-ATACA--TTGCTACTTACTA--ATATATCACTGATGTTGCGATACAAACT-TCT
gi|1 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggcG---------ATGT---CGCAATACA--TTGCT-A------CTTACT--------AATA--------TATCACTGATGTTGCG-ATACAAACTTCTATTTACTA--ATatttactaat
gi|10 : tatttttacacaaaataaaatgaaagctatacaattatacaatataaattatacaaatcgacaagatttaatcatcatgaaacaatactggccttataatgttctaagatgtaatcgtgttaataccgttcactttaataagcttttgtcttataTGCTA------ACTA-TGTCTTACTG---------ATAT---CGAAATACAAACTGCA-A------CTCACT--------TTTG--------TTTTACTGATGTCGCG-ATACAAACTAC----TGCTA--ATGTATTAC
gi|11 : aattagATTTAACTG---------ATGT---CTGGGTACAAACTGCT-A------CTCACT--------AGTT--------TTTTACTGATGTCGCG-ATACAAACTGCTGCTCACT
gi|12 : tccacttgattaagttttaACTAATAAATCACTG---------ATGT---CGCGACACAAACTGCT-A------TTTACTTATTTACTAATA--------TATCACTGATGTCGCG-ATACAAACTGCTATTTAC
gi|13 : taTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TTTTACTGTTGTCGCG-ATACAAACTGTTATTTA
gi|14 : agctttTGCTACT---CACAAGTGTTTT-CTG---------ATGT---CGCGATACAAACTGCT------------CC--------AATA---------GTCCCTCATGTCGa
gi|15 : ACTG---------ATGT---CGCCGTACAAACTGCT-AACGTTACTTACT--------AATG--------TTTTACTGCTGTCGCatagatgt
gi|2 : tTATCTAATTG---------GTGC---CGCGATACAAAGTGCT-T------TTTACT--------TATA--------TATTACTGTTGTCGCG-ATACAAACTGTTATTTACTA--ca
gi|3 : atttttacacaaaataaaataatgaataaacaattatacaatatatacaaatctaaatttacttaacatgaaaccaaataccggtctaacaatgatctaagatgttatcgtgttaacattgttcactttaatcagctttTGCTATT---TACTAATATATCACTATTTACTAATATAT---CTCGATACAAACTGCT-A------TTTACT--------AATG--------TATCACTGATGTCACATATACAAACTGCTATTTACTA--TTATATCACTGATGCTGCGATGCAACTT-TCTCTGCAACGTTACTGAATGATTTAAA
gi|4 : aatcagctttttgacttatagatgtgacgatacaaaaACTGCTACT---CACTAGTATGTTACTG---------ATGT---CGCGGTACAAACTGCT-A------CTCACT--------AGTA--------TGTTACTGATGTTGCG-ATACAAACTGCTACTCACTA--GTACATTACTGATGTCGGGATGCACACT-GCTCTGCAACGTTAATGAATGATTTAAA
gi|6 : T---TACTAATATATCACTG---------ATAT---TGCGATACAAACTGCT-A------TTTACT--------AATA--------AATCACTGATGTCGCG-ATACAAACAGCCATTTACTATTAAATATCACTGATATTGCGATTCAAA
gi|8 : tACTG---------ATAT---CGCAACACAAACTGCT-A------TTTACT--------AATA--------TATCACTGATATCGCA-ACACAAACTGTTATTTACTA--TTATATCACTGACGTGGC--------CTCTCTCTGCAACGTTAATTAATGAactgatatttactatta
gi|9 : ACTGCTTCTAGCTA-TAATATATCACTG---------AGGT---CGCGATACACATTGCT-A------CTTATT--------AATT--------AGTTACAGATGTCGCG-ATACTCATTGCTATTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AAATAAAATTATGAATAAACAACTATAGTATATATACAAAACAACAAAATTTACTCAACAGGACAAAATACCGTTATAATAATGTTCTAAGATGTAATCATGTTAACACTGTTCACTTTAAACATCCTTTGTCTTA
Unaligned ( gi|7 ): TACAATATATACAAATTAACGAAATTTTCTCAACATGAAAAAATACCGGTCTAATAATCGGTCTGATAATGTTTGAAGATGTAATTACACTATCACTAACACTTGTCCACTTTACT
Unaligned ( gi|16 ): GATGTAAACGTGTTAACACTGTTCACGTTAATCAGCTTTTGTCTTATAGA