lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 33 333333333 11 2222222222 1 1 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 1 11 11111 1 555555555 2 1 2222 22 1
lowQualScore : 0 0 5 66 6 4 3 2 6 88 0 6 44 888888888 55 2 1111111111 6 4 5 8 5 1 1 33 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 0 8 88 0 55555 3 5 3 111111111 6 6 5 0 6 3 6 2222 9999999 6 77 5 1
lowQualScore : . . . .. . . . . . .. . . .. ......... .. . .......... . . . . . . . .. ........................................................................................................ . . . .. . ..... . . . ......... . . . . . . . .... ....... . .. . .
lowQualScore : 0 8 5 22 0 2 2 2 5 22 2 0 55 888888888 22 5 2222222222 0 4 0 2 4 4 0 88 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 0 0 22 8 00000 2 4 5 000000000 2 0 5 2 0 7 0 3333 3333333 7 33 0 0
consensus : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCGAAATCTCGACGTTTCGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-TACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATTCTGTT-TTTT-TTT-ACGATGTTTACCTCCGGTTGATTTTCTC--TGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTNAAAAAACGT--T--GTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCNACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCG-AACCAGAAATT-CAAATTTTGACGGCAGGAAACAA--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( gi|1 ) : GCGGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCATACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTGTTGTTTT-TTT-ACACTGTTTACCTCCGGTTGATTTTCTC--TGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-AC--C--GTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCT-AACCAGAAATTTCAAATTTTGATGGCAGGAAACAATATCTCCTTCAGTATTAAAACAGGTATACATGGAT
gi|2 : GTGGCAGAGAAACTTCCGTAAA-ACCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATTTTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAA
gi|5 : aactGTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAA-GCACAATAGCGCGGCAATTGTACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAAcgatacctctgaaaaaagacaaccttttagaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaggtaaattattctgttttattttacgatgtttacctccggatgattttctttgattaaatattatagtaagtccattaaacgtcagtctctttcaaaggaaagtaaaaaaacgttgtttgattgtggtttaaaaaacgtaaacttgaggctgaaagtattgtaaatcaatcaacagctaccaaggaggcgactggcactgacaatgacactgtcccaagctgcagtaatatatccaacactgaagaacagcccgttaaactgaactctcttcctgttgtaacagattctaccattcaatgtgaaccagaaattacaaattttgacggcaggaaacaatgtctccttcagtatgaaaacaggtatgcatggctatacttcagcctaaaaatga
gi|3 : tGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-TACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAAcgataactctgcgaaggagattacttttctaaaaactgatgatctaaactacaaggaaagtaaattattctgtttttttacgatatttttcattgattaaaaatgtcacacaatgggaaatattatagttagtccattaaacgtcactctctttcaaaggaaag
gi|6 : tGTGGCAGAGAAACTTCCCAAAC-AGCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC------------------------GTCTAATCCG----------TGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAtgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|8 : caaactTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATTCTGTTTTTTT-TTTTATGATGTTTACCTCCGGTTGATTTTCTC--TGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGTTAAAAA---C--CTTGTTTGATTGTGGTGCAAA-AAATGTAAACTTGAGGCTGAAAgcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|2 : ATTCTGTT-TTAT-TTT-ACGATGTTTACCTCCGGATGATTTTCTT--TGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGT--T--GTTTGATTGTGGTTTAAA-AAACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTG-AACCAGAAATTACAAATTTTGACGGCAGGAAACAATGTCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|6 : aactgtggcagagaaacttccgtaaaacccagttaagatttcccaaaatctcgacgtttcatttacattacaacatttctgccaaaagtgctggtgctatagcgttattagcctaaaagcatctatagcacggcaattttacatgggggttacatgtaaccagtctaatcagtaatattccatggtttgagattcagtctatgcttttcacaagggaagcagtctagatcatctgcgatgcctctctaacactttcgactcataacgaacgatacctctgaaaaaagacaaccttttagaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaggtaaattATTCTGTT--TTC-TTT-ACGATGTTTACCTCCGGTTGGTTTT--------------ATGTCACATAATGGGAAActatacttcagcctaaaaatga
gi|4 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattGTTTTATTT-ACGATGTTTACTTCCAGTTGATTTTCTC--TGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGT--T--GTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCG-AACCAGAAATTTCAAATTTTGATGG------------TCTCCTTCAGTATGAAAACTGGTATGCATGGaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|5 : caaacttttagaaaagcaagcgtcaccgatgatctagacaacaagggaagtaaatttttcgggTT-ATTCTGTTTTTTTACGAT--ATTTT-TCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGctatacttcagcccaaaaata
gi|3 : tgtggcagagaaacttcccaaaaaagccagttaagatttccccaaatctcgatgttttgtttacatttcaacatttccgctggaagcgctggtctggtaaagcgttattagcctaaaagcacaatagcgcggcaattgtacatgctggttacgtgtaaccagcctaatcagttatattctgtggtttgggatttagtctatgcttttcacaagggaagcagtcaagatcataggtgacgcctctctaacacattcgactcataacaaacgataactctgcgaaggagattacttttctaaaaactgatgatctaaactacaaggaaagtaaaAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACAT--T--GCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATC
gi|6 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAAA-ACGTT--GTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACT
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAAT-CTGAACCA-------CAAATTTTGATGGCAGGAAACAA---------CAGTATGAAAACAGATATACATGG
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AACATCACATAGAATTTATTTATTCAAAAATGATTTTTTTTTTTACATTTTGATACTTTCCATTTAATCTAGATAAGTCCTCCTGTGTTAGGGCTACCTCATTTATCAATTGTATTGTATTAGCTATAATGTTCTTTTTATGCCTGGATAAAAATAATTGAATTGAACTGAATAACCGATAATCTTTTGTAATACTATGACTTCGTTACATTTTATTCTCAATCTTTTAGAAAAGCAAGCACCGTCGACGATCT
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|11 ): ATACTGATCGTTTGTGCCAGAATAAAATTACACTGTTAGTAAGTTGAATGGAATTGAATAACCGATATTCTATGCCTTCCGTTACATTTTTTATTCTCGATCAAACCTTTCAGAAAAAGCAAGCATCGCCGATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Unaligned ( gi|15 ): ACCACTCACTAACACATTTGGGTCGAACGAACGATAACTCTGCGAAAGAGATTGT
Unaligned ( gi|16 ): ACTCTCTAACTCATTTTGTAACAAACGGTAACTCTGTGAAGGAGATTGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 2222 222222
lowQualScore : 8 4 2 1 0 3 5 0 444 1 3 0 3 1 1 1 1 3 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 6 1 222 1 1 7 1 2 4444 2 2 777777
lowQualScore : . . . . . . . . ... . . . . . . . . . . .................................................................................... . . . ... . . . . . .... . . ......
lowQualScore : 0 6 8 4 8 2 0 8 888 0 2 8 8 0 0 4 0 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 7 7 333 4 0 3 0 5 0000 0 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGGCGNNNNNNCAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCT-ATTCTGTT-TTTTTTT--ACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTT-CAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCGAAATCTCGACGTTTCGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATTCTGTT-TTTTTTT--ACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTNAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCNACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAA-TT-CAAATTTTGACGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTGTTGTTTTTTT--ACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTT-CAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGG
gi|15 : gcgCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGAat
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAA-ACCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG-AAAAAAGA----------CAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCT-GTTTTATT-TT-------ACGATGTTTACCTCCGGATGATTTTCTTTGATT-------------------AAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTT-AAAAAACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAA-TTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCTAGATCATCGGTGACGCTT
gi|4 : caaacttttagaaaagcT-TTTATTT--ACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTT-CAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGGaacaagggaagtaaatttttcggggttttatttacgatgtttacttccagttgattttctctgattaaaaatgtcacacaatgggaaatattatagcaagtccattaaatgtcagtctctttcaaaggaatgtcaaaaaacgttgtttgattgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaatcaatcaacagctaccgaggaggctactggcactgacaatgacactgtcccaagctgcagtaatatatccaacactgaagaacagcacattaaattgaactctcctcctgttgtaacagattctaccatccaatgcgaaccagaaatttcaaattttgatggtctccttcagtatgaaaactggtatgcatggctatacttcagcccaaaaata
gi|5 : caaacttttagaaaagcaagcgtcaccgatgatctagacaacaagggaagtaaatttttcggggGTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGAAGGAGActatacttcagcccaaaaata
gi|5 : t-ATTCTG---TTTTTTT--ACGATAT--------------TTTTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGttacttttctaaaaactgatgatctaaactacaaggaaagtaaattattctgtttttttacgatatttttcattgattaaaaatgtcacacaatgggaaatattatagttagtccattaaacgtcactctctttcaaaggaaag
gi|6 : tgtggcagagaaacttcccaaaaaagccagttaagatttccccaaatctcgatgttttgtttacatttcaacatttccgctggaagcgctggtctggtaaagcgttattagcctaaaagcacaatagcgcggcaattgtacatgctggttacgtgtaaccagcctaatcagttatattctgtggtttgggatttagtctatgcttttcacaagggaagcagtcaagatcataggtgacgcctctctaacacattcgactcataacaaacgataactctgcgaaggagattacttttctaaaaactgatgatctaaactacaaggaaagtaaattGTGGCAGAGAAACTTCCCAAAC-AGCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGA
gi|6 : caaactGTAGTCTAGATAATCAGCGACGCgcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacga-ATTCTGTT-TTCTTT---ACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA--------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATTCTGTT-TTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGTT-AAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAActatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACATCACATAGAATTTATTTATTCAAAAATGATTTTTTTTTTTACATTTTGATACTTTCCATTTAATCTAGATAAGTCCTCCTGTGTTAGGGCTACCTCATTTATCAATTGTATTGTATTAGCTATAATGTTCTTTTTATGCCTGGATAAAAATAATTGAATTGAACTGAATAACCGATAATCTTTTGTAATACTATGACTTCGTTACATTTTATTCTCAATCTTTTAGAAAAGCAAGCACCGTCGACGATCT
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|11 ): ATACTGATCGTTTGTGCCAGAATAAAATTACACTGTTAGTAAGTTGAATGGAATTGAATAACCGATATTCTATGCCTTCCGTTACATTTTTTATTCTCGATCAAACCTTTCAGAAAAAGCAAGCATCGCCGATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Alignments
lowQualScore : 222 5555555555 888888888888888888888888888888888888888888 5555555555 222222
lowQualScore : 8 1 0 3 5 0 444 1 3 0 3 1 1 1 1 1 0000000000 1 777777777777777777777777777777777777777777 2222222222 99 1 3 0 2 3 2 777777
lowQualScore : . . . . . . ... . . . . . . . . . .......... . .......................................... .......... .. . . . . . . ......
lowQualScore : 0 4 8 2 0 8 888 0 2 8 8 0 0 4 1 0 3333333333 8 555555555555555555555555555555555555555555 5555555555 22 4 2 2 5 5 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGGCGNNNNNNCAANCTTTTAGAAAACNNNNNNNNNNNGCAAGCGTCACCGATGATCTAGACAACAAGGGAGGTAAATTATTCT-GTT--GTT-TTTTTTT--ACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGGCGNNNNNNCAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCT-ATTCTGTT-TTTTTTT--ACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTGTTGTTTTTTT--ACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTTCAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGG
gi|15 : gcgCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGAat
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAA-ACCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG-AAAAAAGA----------CAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCT------GTT-TTATTTT--ACGATGTTTACCTCCGGATGATTTTCTTTGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTTAAAA-AACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAATTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAACTTTTAGAAAA------------GCAAGCGTCACCGATGATCTAGACAACAAGGGAAGTAAATTTTTCG-G----GGT-TTTATTT--ACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTTCAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGG
gi|5 : GTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGAAGGAGActatacttcagcccaaaaata
gi|5 : tGAAAGTAAATTATTCT-G--------TTTTTTT--ACGATAT--------------TTTTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGttacttttctaaaaactgatgatctaaactacaaggaaagtaaattattctgtttttttacgatatttttcattgattaaaaatgtcacacaatgggaaatattatagttagtccattaaacgtcactctctttcaaaggaaag
gi|6 : tgtggcagagaaacttcccaaaaaagccagttaagatttccccaaatctcgatgttttgtttacatttcaacatttccgctggaagcgctggtctggtaaagcgttattagcctaaaagcacaatagcgcggcaattgtacatgctggttacgtgtaaccagcctaatcagttatattctgtggtttgggatttagtctatgcttttcacaagggaagcagtcaagatcataggtgacgcctctctaacacattcgactcataacaaacgataactctgcgaaggagattacttttctaaaaactgatgatctaaactacaagGTGGCAGAGAAACTTCCCAAAC-AGCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAGCG
gi|6 : caaactGTAGTCTAGATAATCAGCGACGCtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgaGGAGGTAAATTATTCT-GTT-------TTCTTT--ACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagAAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA-------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATTCTGTT-TTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGT-TAAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAActatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACATCACATAGAATTTATTTATTCAAAAATGATTTTTTTTTTTACATTTTGATACTTTCCATTTAATCTAGATAAGTCCTCCTGTGTTAGGGCTACCTCATTTATCAATTGTATTGTATTAGCTATAATGTTCTTTTTATGCCTGGATAAAAATAATTGAATTGAACTGAATAACCGATAATCTTTTGTAATACTATGACTTCGTTACATTTTATTCTCAATCTTTTAGAAAAGCAAGCACCGTCGACGATCT
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|11 ): ATACTGATCGTTTGTGCCAGAATAAAATTACACTGTTAGTAAGTTGAATGGAATTGAATAACCGATATTCTATGCCTTCCGTTACATTTTTTATTCTCGATCAAACCTTTCAGAAAAAGCAAGCATCGCCGATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Alignments
lowQualScore : 222 9999999999999999999999999999999999999999 333333 4444 222222
lowQualScore : 8 1 0 3 5 0 444 1 3 0 3 1 1 1 1 1 5555555555555555555555555555555555555555 0 4 555555 0000 1 3 0 2 3 2 777777
lowQualScore : . . . . . . ... . . . . . . . . . ........................................ . . ...... .... . . . . . . ......
lowQualScore : 0 4 8 2 0 8 888 0 2 8 8 0 0 4 1 0 9999999999999999999999999999999999999999 8 7 888888 5555 4 2 2 5 5 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGGNGATTA--CAANCTTTTAGAAAAC-----------GCGAGCGTCACCGATGATCTAGACTACAAGGGAGGTAAATT------ATTCTGTT--TTTTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGGCGNNNNNNCAANCTTTTAGAAAACNNNNNNNNNNNGCAAGCGTCACCGATGATCTAGACAACAAGGGAGGTAAATT------ATTCTGTTGTTTTTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTGTTGTTTTTTT--ACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTTCAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGG
gi|15 : gcgCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGAat
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAAA-CCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG-AAAAAAGA----------CAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATT------ATTCTGTT---TTATTTTACGATGTTTACCTCCGGATGATTTTCTTTGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTTAAAA-AACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAATTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAACTTTTAGAAAA------------GCAAGCGTCACCGATGATCTAGACAACAAGGGAAGTAAATT------TTTCGG--GGTTTTATTTACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTTCAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGG
gi|5 : GTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGA-----AGGAGATTA------CTTTTCTAAAA---------------------ACTGATGATCTAAACTACAAGGAAAGTAAATT------ATTCTG-----TTTTTTTACGATAT--------------TTTTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGctatacttcagcccaaaaata
gi|6 : tGTGGCAGAGAAACTTCCCAAACA-GCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAGCG
gi|6 : caaactCGAGCGTCGCTGATTATCTAGACTACAAGGGAGGTAAATT------ATTCTG----TTTTCTTTACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataaAAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA-------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATTCTGTT-TTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGT-TAAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAActatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AACATCACATAGAATTTATTTATTCAAAAATGATTTTTTTTTTTACATTTTGATACTTTCCATTTAATCTAGATAAGTCCTCCTGTGTTAGGGCTACCTCATTTATCAATTGTATTGTATTAGCTATAATGTTCTTTTTATGCCTGGATAAAAATAATTGAATTGAACTGAATAACCGATAATCTTTTGTAATACTATGACTTCGTTACATTTTATTCTCAATCTTTTAGAAAAGCAAGCACCGTCGACGATCT
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|11 ): ATACTGATCGTTTGTGCCAGAATAAAATTACACTGTTAGTAAGTTGAATGGAATTGAATAACCGATATTCTATGCCTTCCGTTACATTTTTTATTCTCGATCAAACCTTTCAGAAAAAGCAAGCATCGCCGATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Alignments
lowQualScore : 222 5555555 2 44444444444 222222
lowQualScore : 8 1 0 3 5 0 444 1 3 0 3 1 1 1 1 1 9999999 444 7 3 11 77777777777 3 6 3 1 3 0 2 3 2 777777
lowQualScore : . . . . . . ... . . . . . . . . . ....... ... . . .. ........... . . . . . . . . . ......
lowQualScore : 0 4 8 2 0 8 888 0 2 8 8 0 0 4 1 0 7777777 888 5 6 22 55555555555 2 7 2 4 2 2 5 5 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAG----TTACAANCTTTTAGAAAA-GCGAGCGTCGCCGATGATCTAGACTACAAG-----------GGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGGNGATTACAANCTTTTAGAAAACGCGAGCGTCACCGATGATCTAGACTACAAG-----------GGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAA
gi|1 : gcgATTCTGTTGT-TTTTTTACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTTCAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgttgtttttttacactgtttacctccggttgattttctctgattaaaaatgtcacacaatgggaaatattatagtaagtccattaaacttcagtctctttcaaaggaaagtaaaaaaaaccgtttgattgtggtgtaaataaacgtaaacttgaggttgaaagtatcttaaatcaatcgacagctaccgaggaggccactggtactgacaatgacactgtcccaagctgcagtaatatatccaacactgaagaacagcccgttaaattgaactctcctcctgttgtaacagattctaccattcaatgctaaccagaaatttcaaattttgatggcaggaaacaatatctccttcagtattaaaacaggtatacatggat
gi|15 : gcggtggcagagaaacttcccaaaaagccagttaagatttcccaaaatctctacattttgtttacatttcaatatttccgctggaagcactggtctggtatagcgttattagcctaaaatacctataacatggcaatcatacttgtgggttaggtgtaaccagtctaatccgtaatgttccttggtttaggatttagtctctgcttttcacaagggaagcagtctagatcattggctacgcctctctaacacattcgacttgtaacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGAat
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAAA-CCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG---AAAAAAG------ACAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCTGTTTT-ATTTT-ACGATGTTTACCTCCGGATGATTTTCTTTGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTTAAAA-AACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAATTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAAA-GCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAACTTTTAGAAAA-GCAAGCGTCACCGATGATCTAGACAACAAG-----------GGAAGTAAATTTTTCGGGGTT-TTATTTACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTTCAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGG
gi|5 : GTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGAAGGAGA-----TTAC----TTTTCTAAAA----------ACTGATGATCTAAACTACAAG-----------GAAAGTAAATTATTCTGTTTT-TTT---ACGATATTT--------------TTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGctatacttcagcccaaaaata
gi|6 : tGTGGCAGAGAAACTTCCCAAACA-GCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAGCG
gi|6 : caaactCGAGCGTCGCTGATTATCTAGACTACAAG-----------GGAGGTAAATTATTCTG--TT-TTCTTTACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataaAAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA-------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGGCGctatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
gi|8 : ATTCTGTTTTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGT-TAAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgtttttttttttatgatgtttacctccggttgattttctctgattaaaaatgtcgcacaataggaaatattatagtaattccattaaatgccagtctctttcaaaggaaagttaaaaaccttgtttgattgtggtgcaaaaaatgtaaacttgaggctgaaa
gi|9 : tttgggatttagtctatgcttctcacaagggaagcagtctagatcatcggtgacgcctctcttacacattcgactcataacgaatgacaactctgcgaaggagaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATCTTTTAGAAAA-GCAAGCACCGTCGACGATCT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|11 ): ATACTGATCGTTTGTGCCAGAATAAAATTACACTGTTAGTAAGTTGAATGGAATTGAATAACCGATATTCTATGCCTTCCGTTACATTTTTTATTCTCGATCAAACCTTTCAGAAAAAGCAAGCATCGCCGATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Alignments
lowQualScore : 222 222 444444444444 11 222222
lowQualScore : 8 1 0 3 5 0 444 1 3 0 3 1 1 1 1 1 555 0 1 000000000000 4 1 44 6 1 3 0 2 3 2 777777
lowQualScore : . . . . . . ... . . . . . . . . . ... . . ............ . . .. . . . . . . . ......
lowQualScore : 0 4 8 2 0 8 888 0 2 8 8 0 0 4 1 0 222 8 0 888888888888 0 3 33 7 4 2 2 5 5 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAANCTTTTAGAAAA------------GCGAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAA
gi|1 : gcgATTCTGTTGT-TTTTTTACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTTCAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgttgtttttttacactgtttacctccggttgattttctctgattaaaaatgtcacacaatgggaaatattatagtaagtccattaaacttcagtctctttcaaaggaaagtaaaaaaaaccgtttgattgtggtgtaaataaacgtaaacttgaggttgaaagtatcttaaatcaatcgacagctaccgaggaggccactggtactgacaatgacactgtcccaagctgcagtaatatatccaacactgaagaacagcccgttaaattgaactctcctcctgttgtaacagattctaccattcaatgctaaccagaaatttcaaattttgatggcaggaaacaatatctccttcagtattaaaacaggtatacatggat
gi|11 : gcggtggcagagaaacttcccaaaaagccagttaagatttcccaaaatctctacattttgtttacatttcaatatttccgctggaagcactggtctggtatagcgttattagcctaaaatacctataacatggcaatcatacttgtgggttaggtgtaaccagtctaatccgtaatgttccttggtttaggatttagtctctgcttttcacaagggaagcagtctagatcattggctacgcctctctaacacattcgacttgtaacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCTTTCAGAAAAA-----------GCAAGCATCGCCGATGat
gi|15 : atactgatcgtttgtgccagaataaaattacactgttagtaagttgaatggaattgaataaccgatattctatgccttccgttacattttttattctcgatcaCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGA
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAA-ACCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG---AAAAAAG--ACAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCTGTTTT-ATTTT-ACGATGTTTACCTCCGGATGATTTTCTTTGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTTAAAA-AACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAATTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAACTTTTAGAAAA------------GCAAGCGTCACCGATGATCTAGACAACAAGGGAAGTAAATTTTTCGGGGTT-TTATTTACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTTCAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGG
gi|5 : GTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGAAGGAGA-TTAC--TTTTCTAAAAA-----------------------CTGATGATCTAAACTACAAGGAAAGTAAATTATTCTG---T-TTTTTTACGATAT--------------TTTTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGctatacttcagcccaaaaata
gi|6 : tGTGGCAGAGAAACTTCCCAAAC-AGCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAGCG
gi|6 : caaactA------------ACGAGCGTCGCTGATTATCTAGACTACAAGGGAGGTAAATTATTCTG--TT-TTCTTTACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcatAAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA-------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGctatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
gi|8 : ATTCTGTTTTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGT-TAAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAAgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgtttttttttttatgatgtttacctccggttgattttctctgattaaaaatgtcgcacaataggaaatattatagtaattccattaaatgccagtctctttcaaaggaaagttaaaaaccttgtttgattgtggtgcaaaaaatgtaaacttgaggctgaaa
gi|9 : tttgggatttagtctatgcttctcacaagggaagcagtctagatcatcggtgacgcctctcttacacattcgactcataacgaatgacaactctgcgaaggagaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATCTTTTAGAAAA------------GCAAGCACCGTCGACGATCT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Alignments
lowQualScore : 222 222 444444444444 11 222222
lowQualScore : 8 1 0 3 5 0 444 1 3 0 3 1 1 1 1 1 555 0 1 000000000000 1 44 6 1 3 0 2 3 2 777777
lowQualScore : . . . . . . ... . . . . . . . . . ... . . ............ . .. . . . . . . . ......
lowQualScore : 0 4 8 2 0 8 888 0 2 8 8 0 0 4 1 0 222 8 4 888888888888 3 33 7 4 2 2 5 5 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAA
gi|1 : gcgATTCTGTTGT-TTTTTTACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTTCAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgttgtttttttacactgtttacctccggttgattttctctgattaaaaatgtcacacaatgggaaatattatagtaagtccattaaacttcagtctctttcaaaggaaagtaaaaaaaaccgtttgattgtggtgtaaataaacgtaaacttgaggttgaaagtatcttaaatcaatcgacagctaccgaggaggccactggtactgacaatgacactgtcccaagctgcagtaatatatccaacactgaagaacagcccgttaaattgaactctcctcctgttgtaacagattctaccattcaatgctaaccagaaatttcaaattttgatggcaggaaacaatatctccttcagtattaaaacaggtatacatggat
gi|11 : gcggtggcagagaaacttcccaaaaagccagttaagatttcccaaaatctctacattttgtttacatttcaatatttccgctggaagcactggtctggtatagcgttattagcctaaaatacctataacatggcaatcatacttgtgggttaggtgtaaccagtctaatccgtaatgttccttggtttaggatttagtctctgcttttcacaagggaagcagtctagatcattggctacgcctctctaacacattcgacttgtaacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCTTTCAGAAAAA-----------GCAAGCATCGCCGATGat
gi|15 : atactgatcgtttgtgccagaataaaattacactgttagtaagttgaatggaattgaataaccgatattctatgccttccgttacattttttattctcgatcaCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGA
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAA-ACCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG---AAAAAAG--ACAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCTGTTTT-ATTTT-ACGATGTTTACCTCCGGATGATTTTCTTTGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTTAAAA-AACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAATTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAACTTTTAGAAAA------------GCAAGCGTCACCGATGATCTAGACAACAAGGGAAGTAAATTTTTCGGGGTT-TTATTTACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTTCAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGG
gi|5 : GTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGAAGGAGA-TTAC--TTTTCTAAAAA-----------------------CTGATGATCTAAACTACAAGGAAAGTAAATTATTCTG---T-TTTTTTACGATAT--------------TTTTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGctatacttcagcccaaaaata
gi|6 : tGTGGCAGAGAAACTTCCCAAAC-AGCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAGCG
gi|6 : caaactA------------ACGAGCGTCGCTGATTATCTAGACTACAAGGGAGGTAAATTATTCTG--TT-TTCTTTACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcatAAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA-------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGctatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
gi|8 : ATTCTGTTTTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGT-TAAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAAgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgtttttttttttatgatgtttacctccggttgattttctctgattaaaaatgtcgcacaataggaaatattatagtaattccattaaatgccagtctctttcaaaggaaagttaaaaaccttgtttgattgtggtgcaaaaaatgtaaacttgaggctgaaa
gi|9 : tttgggatttagtctatgcttctcacaagggaagcagtctagatcatcggtgacgcctctcttacacattcgactcataacgaatgacaactctgcgaaggagaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATCTTTTAGAAAA------------GCAAGCACCGTCGACGATCT
blockSeqs : A T T G TT A G A A C T G T TT C CNNNNNNNNNNN N TT T A A G A C ATGT
blockSeqs : . T C G GT A C C A A C G C A . G GG . A A G T C T
blockSeqs : . C C G T A C A T T A A C T . G TT . A C . . . A
blockSeqs : . G . C . . . . . A C T C T . A . . A A
blockSeqs : T C A . . . . . . .
blockSeqs : C A .
blockSeqs : . A
blockSeqCons : ************
originalCons : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
finalCons : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT
Alignments
lowQualScore : 222 222 444444444444 11 222222
lowQualScore : 8 1 0 3 5 0 444 1 3 0 3 1 1 1 1 1 555 0 1 000000000000 1 44 6 1 3 0 2 3 2 777777
lowQualScore : . . . . . . ... . . . . . . . . . ... . . ............ . .. . . . . . . . ......
lowQualScore : 0 4 8 2 0 8 888 0 2 8 8 0 0 4 1 0 222 8 4 888888888888 3 33 7 4 2 2 5 5 5 888888
consensus : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
Reference ( family-709 ) : NNNGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCGACGTTTTGTTTACATTTCAACATTTCCGCCGGAAGCGCTGGTCTGGTATAGCGTTATTAGCCTAAAAGCACCTATAGCGCGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCNGTAATATTCCGTGGTTTGGGATTNAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCGACGCCTCTCTAACACATTCGACTCGTAACGAACGATAACTCTGCGAAGGAGAGTTACAACCTTTTAGAAAA------------GCAAGCGTCGCCGATGATCTAGACTACAAGGGAGGTAAATTATTCTGTTTT-TTTTTTACGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCCACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCGAACCAGAAATTTCAAATTTTGATGGCAGGAAACA--A--TCTCCTTCAGTATGAAAACAGGTATGCATGG
gi|1 : GTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTCCCAAAATCTCTACATTTTGTTTACATTTCAATATTTCCGCTGGAAGCACTGGTCTGGTATAGCGTTATTAGCCTAAAA-TACCTATAACATGGCAATCAT-ACTTGTGGGTTAGGTGTAACCAGTCTAATCCGTAATGTTCCTTGGTTTAGGATTTAGTCTCTGCTTTTCACAAGGGAAGCAGTCTAGATCATTGGCTACGCCTCTCTAACACATTCGACTTGTAACGAA
gi|1 : gcgATTCTGTTGT-TTTTTTACACTGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGTAAGTCCATTAAACTTCAGTCTCTTTCAAAGGAAAGTAAAAAAA-ACCGTTTGATTGTGGTGTAAATAAACGTAAACTTGAGGTTGAAAGTATCTTAAATCAATCGACAGCTACCGAGGAGGCCACTGGTACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATTCAATGCTAACCAGAAATTTCAAATTTTGATGGCAGGAAACAATA--TCTCCTTCAGTATTAAAACAGGTATACATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgttgtttttttacactgtttacctccggttgattttctctgattaaaaatgtcacacaatgggaaatattatagtaagtccattaaacttcagtctctttcaaaggaaagtaaaaaaaaccgtttgattgtggtgtaaataaacgtaaacttgaggttgaaagtatcttaaatcaatcgacagctaccgaggaggccactggtactgacaatgacactgtcccaagctgcagtaatatatccaacactgaagaacagcccgttaaattgaactctcctcctgttgtaacagattctaccattcaatgctaaccagaaatttcaaattttgatggcaggaaacaatatctccttcagtattaaaacaggtatacatggat
gi|11 : gcggtggcagagaaacttcccaaaaagccagttaagatttcccaaaatctctacattttgtttacatttcaatatttccgctggaagcactggtctggtatagcgttattagcctaaaatacctataacatggcaatcatacttgtgggttaggtgtaaccagtctaatccgtaatgttccttggtttaggatttagtctctgcttttcacaagggaagcagtctagatcattggctacgcctctctaacacattcgacttgtaacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCTTTCAGAAAAA-----------GCAAGCATCGCCGATGat
gi|15 : atactgatcgtttgtgccagaataaaattacactgttagtaagttgaatggaattgaataaccgatattctatgccttccgttacattttttattctcgatcaCTCACTAACACATTTGGGTCG-AACGAACGATAACTCTGCGAAAGAGA
gi|16 : accaCTCTCTAACTCATT----TTGTAACAAACGGTAACTCTGTGAAGGAGAttgt
gi|2 : aGTGGCAGAGAAACTTCCGTAAA-ACCCAGTTAAGATTTCCCAAAATCTCGACGTTTCATTTACATTACAACATTTCTGCCAAAAGTGCTGGT--GCTATAGCGTTATTAGCCTAAAAGCATCTATAGCACGGCAATT-TTACATGGGGGTTACATGTAACCAGTCTAATCAGTAATATTCCATGGTTTGAGATTCAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCTGCGATGCCTCTCTAACACTTTCGACTCATAACGAACGATACCTCTG---AAAAAAG--ACAACCTTTTAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTAAATTATTCTGTTTT-ATTTT-ACGATGTTTACCTCCGGATGATTTTCTTTGATTAAA-------------------TATTATAGTAAGTCCATTAAACGTCAGTCTCTTTCAAAGGAAAGTAAAAAAACGTTGTTTGATTGTGGTTTAAAA-AACGTAAACTTGAGGCTGAAAGTATTGTAAATCAATCAACAGCTACCAAGGAGGCGACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCCGTTAAACTGAACTCTCTTCCTGTTGTAACAGATTCTACCATTCAATGTGAACCAGAAATTACAAATTTTGACGGCAGGAAACA--ATGTCTCCTTCAGTATGAAAACAGGTATGCATGGttgg
gi|3 : aactGTGGCAGAGAAACTTCCCAAAA-AGCCAGTTAAGATTTAACGAAATCTCGACGTTTTGTTAACTTTTCAACATTTCTGCTGGA-GCGCTGGTTTGGTATAGTGTTATTAGCCTAAAAGCACCTATAGCGTGGCAATC-T-ACATGCGGGTTACGTGTAACCAGTCTAATCCCTAATATTACGTGGTTTGGGATTAAGTCTATGCTTTTCACAAGGGAAGCAGTCTAGATCATCGGCAACGCCTCTCTAACACCTTAGACTCTTAATGAATGATAACTCTCCGAAGGAGActatacttcagcctaaaaatga
gi|3 : tAAAAATGTCACACAATGGGAAATTTTATATTAAGTCCATTAAACATCAGTCTCTTTCAAAGGAAAGTAAAAAAACATTGCTTGACTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCATAAATTAATCttgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatgtcacacaatgggaaattttatattaagtccattaaacatcagtctctttcaaaggaaagtaaaaaaacattgcttgactgtggtgtaaaaaaacgtaaacttgaggctgaaagtatcataaattaatc
gi|4 : tgtggcagagaaacttcccaaaaagccagttaagatttaacgaaatctcgacgttttgttaacttttcaacatttctgctggagcgctggtttggtatagtgttattagcctaaaagcacctatagcgtggcaatctacatgcgggttacgtgtaaccagtctaatccctaatattacgtggtttgggattaagtctatgcttttcacaagggaagcagtctagatcatcggcaacgcctctctaacaccttagactcttaatgaatgataactctccgaaggagattgcggcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAACTTTTAGAAAA------------GCAAGCGTCACCGATGATCTAGACAACAAGGGAAGTAAATTTTTCGGGGTT-TTATTTACGATGTTTACTTCCAGTTGATTTTCTCTGATTAAAAATGTCACACAATGGGAAATATTATAGCAAGTCCATTAAATGTCAGTCTCTTTCAAAGGAATGTCAAAAAACGTTGTTTGATTGTGGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATCAATCAACAGCTACCGAGGAGGCTACTGGCACTGACAATGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCACATTAAATTGAACTCTCCTCCTGTTGTAACAGATTCTACCATCCAATGCGAACCAGAAATTTCAAATTTTGATGG--------------TCTCCTTCAGTATGAAAACTGGTATGCATGG
gi|5 : GTGGCAGAGAAACTTCCCAAAAAAGCCAGTTAAGATTTCCCCAAATCTCGATGTTTTGTTTACATTTCAACATTTCCGCTGGAAGCGCTGGTCTGGTAAAGCGTTATTAGCCTAAAAGCACA-ATAGCGCGGCAATTGT-ACATGCTGGTTACGTGTAACCAGCCTAATCAGTTATATTCTGTGGTTTGGGATTTAGTCTATGCTTTTCACAAGGGAAGCAGTCAAGATCATAGGTGACGCCTCTCTAACACATTCGACTCATAACAAACGATAACTCTGCGAAGGAGA-TTAC--TTTTCTAAAAA-----------------------CTGATGATCTAAACTACAAGGAAAGTAAATTATTCTG---T-TTTTTTACGATAT--------------TTTTCATTGATTAAAAATGTCACACAATGGGAAATATTATAGTTAGTCCATTAAACGTCACTCTCTTTCAAAGGAAAGctatacttcagcccaaaaata
gi|6 : tGTGGCAGAGAAACTTCCCAAAC-AGCCAGTAAAGATTTCCCAAAATCTCAAGGTTTTGTTTACATTTCAACATTTCGGCCAGAAGCACTTGTCTGGTATAGTGTTATTAGCCTAAAACCACCTATAGCGCGACAATC-------------------------GTCTAA----------TCCGTGCTTTGGGATTAAGTCTATGCTTTTTACAAGAGATGCAGTCTAGATCATCTGCGACACCTCTCTTACACATTCGACTCATAACGAGCG
gi|6 : caaactA------------ACGAGCGTCGCTGATTATCTAGACTACAAGGGAGGTAAATTATTCTG--TT-TTCTTTACGATGTTTACCTCCGGTTGGTTTT------------ATGTCACATAATGGGAAAtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggaaaaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|6 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcatAAAAAAACGTTGTTTGATTGTAGTGTAAAAAAACGTAAACTTGAGGCTGAAAGTATCGTAAATAAATCAACAGCTACCGAGGAAGCCACTGGCACTaaaacgttgtttgattgtagtgtaaaaaaacgtaaacttgaggctgaaagtatcgtaaataaatcaacagctaccgaggaagccactggcact
gi|7 : caaactgtggcagagaaacttcccaaacagccagtaaagatttcccaaaatctcaaggttttgtttacatttcaacatttcggccagaagcacttgtctggtatagtgttattagcctaaaaccacctatagcgcgacaatcgtctaatccgtgctttgggattaagtctatgctttttacaagagatgcagtctagatcatctgcgacacctctcttacacattcgactcataacgagcgtcgctgattatctagactacaagggaggtaaattattctgttttctttacgatgtttacctccggttggttttatgtcacataatgggGACACTGTCCCAAGCTGCAGTAATATATCCAACACTGAAGAACAGCCTGTTAAATTGAACTCTCCTCCTGTTGTTACAGATTCTACCATTCAATCTGAACCA-------CAAATTTTGATGGCAGGAAACA--A---------CAGTATGAAAACAGATATACATGG
gi|8 : agTTTGGGATTTAGTCTATGCTTCTCACAAGGGAAGCAGTCTAGATCATCGGTGACGCCTCTCTTACACATTCGACTCATAACGAATGACAACTCTGCGAAGGAGAGctatactatggcccataaaggaaaggttatatttaaaaggttaaattcaaaaatactaaacaaagagacgtggcatggtaattgcattgcagatgtgacattttatgttcgacaaataaaatgttaaattacttagttgaaaatactgttcaaatttatacacagtccatctttcaataaaatcctttttcccaaaatgggcaattattgcgcgtgaattgcccaatttgaaaggccaaggcctctttccaattttctgatcaagccctgtca
gi|8 : ATTCTGTTTTTTTTTTTATGATGTTTACCTCCGGTTGATTTTCTCTGATTAAAAATGTCGCACAATAGGAAATATTATAGTAATTCCATTAAATGCCAGTCTCTTTCAAAGGAAAGT-TAAAAACCTTGTTTGATTGTGGTGC-AAAAAATGTAAACTTGAGGCTGAAAgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctgtttttttttttatgatgtttacctccggttgattttctctgattaaaaatgtcgcacaataggaaatattatagtaattccattaaatgccagtctctttcaaaggaaagttaaaaaccttgtttgattgtggtgcaaaaaatgtaaacttgaggctgaaa
gi|9 : tttgggatttagtctatgcttctcacaagggaagcagtctagatcatcggtgacgcctctcttacacattcgactcataacgaatgacaactctgcgaaggagaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATCTTTTAGAAAA------------GCAAGCACCGTCGACGATCT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTATTTTACATCGTATTCTTTATATTTAATATAGATATTGTGTTAGGTCTACCTCATTTATCAATTTTCTGTATTATGTTTACCAAGGACTTATAGAAAAGTCTTTGTGCATACTAATCTTTGCGCCTGAATAGAATTATATTGAATTGAATTAAATAATCTTTGAAATACTATG
Unaligned ( gi|12 ): AAATCAACATTACATAGTATTTATTTATCTATAATTAATTCTTTTTTTTTAACAATTTTTACACTTTGTATTTAATCTAGATATTGTGATAGGCCTATCTGATATATTAATTTTATTGTGT
Unaligned ( gi|13 ): AAATACCTTTTCCCCAAAATGGGCAATTACTGCACGTGAATTTCCCAATTTGAAAGGCAAAGGCCTCTTCCCAATTTTCTGATGAAAAGCCCTG
Unaligned ( gi|14 ): ACCAAAATCAACATTACATAGTACTTATATATTCATAATTGATTTTTTTTCTCATATTTTTAGACTTTATGCTAATT