lowQualScore : 1 1 1 3 1 5555555555555555555555555555555 111 1 1 5555555555555555555 1 22222
lowQualScore : 0 0 0 8 1 0 5 55 6666666666666666666666666666666 333 22 33 1 2 0 5 2 99999999 6666 2 33 66 7777777777777777777 1 2 3 5 00000 6 2 6
lowQualScore : . . . . . . . .. ............................... ... .. .. . . . . . ........ .... . .. .. ................... . . . . ..... . . .
lowQualScore : 0 0 0 8 4 0 0 55 6666666666666666666666666666666 666 99 44 6 7 9 1 5 11111111 9999 4 44 99 9999999999999999999 9 7 0 0 22222 0 5 0
consensus : NNNNNNNCAT-TA-C-TTANCTAAGTAAATACTTAAAAA--CTTAAAGT---TGCATGCA-GTATN---T-ATGTAGGCATTTAAGT-TTGTTT-TACTT--AAA-TCAGTAT-ACA--------TTTCTGCATGT--TTTA-AG--TTTTTAAGTATTTAC-TTA-AGCT-T----AAGT-TAATGTTGGTGAAA-CTTGATCCAGG-TAGTATCAANACAA
Reference ( gi|1 ) : TAAGTTTCAT-TA-C-TTATCTAAGTAGA-ACGTAAAAA--CTTAAAGT---TGCATGCA-GTATG---T-ATGCAGGCATTTAAGT-ATGTTT-TACTT--ATA-TCTGTGT-ACA--------TTTCTGCATGC--CTTA-AG--TTTTTAAGTATTTAT-TTAAAGCT-TA---AAGT-TCATGTTGGTGAAA-CTTGGTTCCGG-CAA-ACTAAGATAAATATTCAGTGTTCAGGAACGGTAGATTTCAGTCTAAATTCAAAATA
gi|19 : CAT-TAAC-TCAGCTAAGTAAATACTTAAAAA--TTTAAA------ACATACA-G
gi|10 : tgtgagtatCATATA-C-TTAGCTAAGTAAATACTTCAAAA--TTTTAA------GCATGCA-GTAC-------TG-----ATTTAAGT-AAGCAT-AACCTAAATA-TTAGTCTAACA--------CTT-TAAATGCTACTTA-ttggtgaaa
gi|5 : ataagtagaT-TA-CCTTAACTAAGTAAATATTTAAAAA--CTTAAA-C---TGT---CA-ATATT---TTATATAGCCATTTAAGT-TTCTTT-TATTT--AAA-TCTGTAT-ACATTGCTACATTTCTGCATGT--TTGA-AG--TTtttgtgaaattc
gi|9 : aacat-TA-C-TTGCTCAAGTAGATAC-TAAAAAAACTGAAAGTG--TGAATGTT-TTTTT---T-AT---------TATGT-GTGTTT-TACTT--AAA-TCAGTGT-ATG--------TTTATGCATGT--TTTA-TG--TTTCTAAATATTatgctaatgttggtgag
gi|7 : tcatcaatacaATTTAAATAAA-AC----AAA--CTCA--GC---TGCTTACATGTATA---T-A---AGATGTTTAAGT-A---TT-TACTT--
gi|8 : TAAGTAGATACTTAAAA---CTTGAAGT---C---TGT--TTATG---T-TTATAGGCATGTA--T-TTGTTTCTACTT--AT--TCAGTTT-A----------TCTCTGCATGT--TTTA-AG--TTTTTAAGTATTT-T-TT--AGCT------AAGC-TTGTGCTGGTTAActgtatacatttctgcatgatttaagatttcagtagtaactaatttaaagtattatgttgaggaaatttggtccag
gi|6 : AAGTAAATACCTAAAAA--CCTAAAATGTTTATATTCA----TG---T-ATGCA----TTTAAGT-TTGTTT-TTATT--AAA-TCAGAAT-GAA--------TGTCTGCATGT--TTTA-AG--TTTTCAAGTATTTAC-TT--AGCT------ACGG-TAATGTT-GTGAAA-CTgttcacgca
gi|4 : -ACTTAAAAA--CT-AAAGT----GTA---A-ATGTT---C-ATGTATGCACCTAAGT-TAATTT-TACTT---TAGTCGGTAT-ACC--------GTTCTGCATAC--TTTG-AGCACTGTT--GTATTTAC-TTA---CC-TA---AA-T-TAATACTGGTGAAA-CTca
gi|7 : gaaataatgcatGTAAATA--CTTAAA-------CATCTT-ATATA---C-ATGTAAGCAGCTGAGT-TTGTTT-TATTT--AAA-TCTGTAT-ACA--------TTTCTGCATGA--TTTA-AG--ATTTC-AGTAGTAAC-T---AATT-TA---AAGTATTATGTTGAGGAAA-TTTGGTCCcaatcc
gi|17 : aaGTAAACA--CTTAAGAA---TG---GCA-ATATT---T-ACGGAGGCAGTTTATT-TTGCTT-TGCGT--AAA-TCCGTAA-ACA--------TTTCTGCATGag
gi|3 : A-GTATAAATT-ATAAAGACATTTAAGC-GGGTTT--ACTA--AAA--CAGTAT-ACA--------TTTCTGCATGT--TTGA-AG--TGTGTAAGTACTTAT-TCAA--TT-TA---A--T----TG-TGGTGAAA-CTTGGTCCAGG-TA
gi|12 : tatatatttaaaaatagtta---T-ATGTGAACATTTAAAT-TTGTTT-TACTC--AAA-TCAATAT-ACA---------TTCTGCATGT--CATG-AG--TGTTTATGTATTTG---CATAGCT------AGGT-TAATGTTTGTGAAA-CTCGttcaggatcatgtaatttatatttcgaagt
gi|2 : atgttAGGCATTAAAGA-CCGTTT-CACTG--AAA-TCAGTAT-ACA--------TTTCTGCATAT--TTTA-AG--TTGTTAAATATTAAC-TTAG---T-TA---AA-T-TTATGTATATGAAA-CTTGaaact
gi|11 : taactaagtagaatATATAAGT-TTGGGT-TACTT--ATA-TCAGGAT-ATA--------TTTATGCATGT--CTTATAA----TTTAAGTATTTAC-TTA----T-CT---AAGT-TAGTGTTGG-GAAATCTCAATCCAGG-TAA-ATCAACACAAaccctgctttcataatatataaatatgttttgcagtaatttaggttttgattaagcttaaatt
gi|10 : ATTTAGGTTATGCTT--ACTT--AAA-TCAGTA----------------CTGCATGC--TTAA-AA--TTTTGAAGTATTTAC-TT--AGCT------AAGT-ATATGTTTGTGAAA-TT
gi|18 : ataagtagataagtagcatttaaagtgttagactaatTTT-TACTT--AAA-CCTGTAA-ACA--------TTTCTGTATGC--CTCA-CG--CTAATAAGAATTTACATTA----C-TA--------TTATGTTGCTGAAA-CTc
gi|16 : TT--A-A-TCAGTGT-GAA--------TTTGTGCATGC--TTAG-AA--TTTTTATGTATTTAC-TTAA--CT------GAGT-TAATATTAGTGAAA-CTT
gi|13 : tcttctGTAT-ACG--------TTTCTGCATGG--TTCA-AG--TTTGTAAGTAATTAT-TT--AGCT------GAGT-TAATTTTGGTGAAA-CTTGATCCAGG-a
gi|15 : TTCTGCAAGC--TTTA-AG--TTTTTGCGGATTTAT-TTAAAGTTCTATTTAAGG-TAAGGTTGGTG-AA-TTTGACTCGGGACAGTATTAAGtggtcagctttcaaatatat
gi|19 : TCTGTATGT--TTTA-AA--TTTTTAAGTATTTAC-TT--AGCT------GAGT-TAATGTTGGTGAAA-
gi|21 : tgtgagtaTTTTAAGTATTTAC-TT--AGCT------AAGT-TAATGTTTGTGAAA-
gi|20 : ggaTTTTAAGTATTTAC-TT--AGCT------AAGT-TAATGTTTGTGAAA-ta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TAGTTAGAATTACTTAACTCAGTACGAGTTCTATATTTTTTTAACTTTTGGTATTTACTTATCTAGGTTAATGTTGGTAAAACTCAATCC
Alignments
lowQualScore : 1 666666666666 444444444444 1
lowQualScore : 3 1 888 8 1 222222222222 8888888888 3 1 6666 3 2 88888888 2 2 22 2 333333333333 2 33 0 2 8 5 0 1
lowQualScore : . . ... . . ............ .......... . . .... . . ........ . . .. . ............ . .. . . . . . .
lowQualScore : 3 0 888 9 8 222222222222 2222222222 3 0 5555 1 7 55555555 2 2 88 2 777777777777 2 11 6 4 0 5 7 0
consensus : NNNNNNNCATTAC-TTANCTAAGTAG---ATACTTAAAAA-CTTAAAGT-TG--TGCAGTATT---T-A---TGT-AGGC----ATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
Reference ( family-705 ) : NNNNNNNCATTAC-TTANCTAAGTAA---ATACTTAAAAA-CTTAAAGT-TGCATGCAGTATN---T-A---TGT-AGGC----ATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTTGATCCAGG-TAGTATCAANACAA
gi|1 : CATTAC-TTATCTAAGTAG---A-ACGTAAAAA-CTTAAAGT-TGCATGCAGTATG---T-A---TGC-AGGC----ATTTAAGTA-TGTTT-TACTTATATCTGTG--------TACATTTCTGCATGCCTTA-AGT--TTTTAAGTATTTAT-TTAAA------GCTTAAAGTTC--ATGTTGGTGAAA-CTTGGTTCCGG-CAA-ACTAAGATAA
gi|10 : taagtttGTAGCATT---T-AAAGTGTTAGACTAATATTTAGGTTATGCTT--ACTTAAATCAGTA---------------CTGCATGCTTAA-AAT--TTTGAAGTATTTAC-TT--A------GC-T-AAGTAT--ATGTTTGTGAAA-TTatattcagtgttcaggaacggtagatttcagtctaaattcaaaata
gi|11 : ataagtagataa----ATATAAGTT-TGGGT-TACTTATATCAGGA--------TATATTTATGCATGTCTTATAA----TTTAAGTATTTAC-TT-A--------TCT-AAGTTA--GTGTTGG-GAAATCTCAATCCAGG-TAA-ATCAACACAAc
gi|12 : TGTT---T-A---TGT-GAAC----ATTTAAATT-TGTTT-TACTCAAATCAATA--------TACA-TTCTGCATGTCATG-AGT--GTTTATGTATTTGC-AT--A------GC-T-AGGTTA--ATGTTTGTGAAA-CTCGA
gi|13 : aGTA--------TACGTTTCTGCATGGTTCA-AGT--TTGTAAGTAATTAT-TT--A------GC-T-GAGTTA--ATTTTGGTGAAA-CTTGATCCAGG-TGGTaact
gi|14 : T-TACTTAACTCAGTA--------CG-AGTTCTATATTTTTTT-AAC--TTTTG-GTATTTAC-TT-A--------TCT-AGGTTA--ATGTTGGTAAAA-CTCAATCCcagctttcaaatatat
gi|15 : tagttagaaTTCTGCAAGCTTTA-AGT--TTTTGCGGATTTAT-TT-AAAGTTCTATTT-AAGGTA--AGGTTGGTG-AA-TTTGACTCGGGACAGTATTAA
gi|16 : CTTTAATCAGTG--------TGAATTTGTGCATGCTTAG-AAT--TTTTATGTATTTAC-TT-AA--------CT-GAGTTA--ATATTAGTGAAA-CTTg
gi|17 : tcttTAAACA-CTTAAGAA-TG---GCAATATT---T-A---CGG-AGGC----AGTTTATTT-TGCTT-TGCGTAAATCCGTA--------AACATTTCTGCATGa
gi|18 : gTTT-TACTTAAACCTGTA--------AACATTTCTGTATGCCTCA-CGC--TAATAAGAATTTACATT-A--------CT----ATT---ATGTTGCTGAAA-CT
gi|19 : TCTGTATGTTTTA-AAT--TTTTAAGTATTTAC-TT--A------GC-T-GAGTTA--ATGTTGGTGAAA-
gi|2 : tgtgagtaT-AGGC----ATTAAAGAC-CGTTT-CACTGAAATCAGTA--------TACATTTCTGCATATTTTA-AGT--TGTTAAATATTAAC-TT-AG--------TT-AAATTT--ATGTATATGAAA-CTTGACCC
gi|20 : taactaagtagaa--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-tgctttcataatatataaatatgttttgcagtaatttaggttttgattaagcttaaatt
gi|21 : tcga--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-ta
gi|3 : ggaTAT---ATATTTAAAAA-T----AGT-TA-----AGTATAAATT-A---TAA-AGAC----ATTTAAGCG-GGTTT--ACTAAAA-CAGTA--------TACATTTCTGCATGTTTGA-AGT--GTGTAAGTACTTAT-TC-AA--------T-----TTA--ATTGTGGTGAAA-CTTGGTCCAGG-TAta
gi|4 : AAATAATGCATACTTAAAAA-CT-AAAGT--GTA---AATGTT---C-A---TGT-ATGC----ACCTAAGTT-AATTT-TACTTTAGTCGGTA--------TACCGTTCTGCATACTTTG-AGCACTGTT--GTATTTAC-TT-A--------CCT-AAATTA--ATACTGGTGAAA-CTCAATCCttcaggatcatgtaatttatatttcgaagt
gi|5 : gTTACCTTAACTAAGTAA---ATATTTAAAAA-CTTAAA-C-TGT---CAATATT---TTA---TAT-AGCC----ATTTAAGTT-TCTTT-TATTTAAATCTGTATACATTGCTACATTTCTGCATGTTTGA-AGT--T
gi|6 : aacatAAGTAA---ATACCTAAAAA-CCTAAAAT----GTTTA-TATT---C-A---TGT-ATGC----ATTTAAGTT-TGTTT-TTATTAAATCAGAA--------TGAATGTCTGCATGTTTTA-AGT--TTTCAAGTATTTAC-TT--A------GC-T-ACGGTA--ATGTT-GTGAAA-CTatgctaatgttggtgag
gi|7 : AAGTAA---ATACTTAAACATCTTA--------------TATA---C-A---TGT-AAGC----AGCTGAGTT-TGTTT-TATTTAAATCTGTA--------TACATTTCTGCATGATTTA-AGA--TTTC-AGTAGTAAC-T---A------ATTT-AAAGTATTATGTTGAGGAAA-TTTGGTCCAGca
gi|8 : TAAGTAG---ATACTTAAAA--CTTGAAGT-C---TGT-TTATG---T-T---TAT-AGGC----ATGTA--TT-TGTTTCTACTTAT-TCAGTT--------TA--TCTCTGCATGTTTTA-AGT--TTTTAAGTATTT---TT-TA------GC-T-AAGCTT--GTGCTGGTTAA
gi|9 : TAC-TTGCTCAAGTAG---ATACTAAAAAAACTGAAAGTGTGAATGT----TT---T-T---TTT-A---------TTATGTG-TGTTT-TACTTAAATCAGTG--------TATGTTTATGCATGTTTTA-TGT--TTCTAAATATTgttcacgca
Alignments
lowQualScore : 1 44444444444 444444444444 1
lowQualScore : 3 1 8 0 0 33333333333 666 3 2 3 3 2 88888888 0 2 22 2 333333333333 2 33 0 2 8 5 1
lowQualScore : . . . . . ........... ... . . . . . ........ . . .. . ............ . .. . . . . .
lowQualScore : 3 0 0 7 7 44444444444 444 6 0 1 1 7 55555555 7 2 88 2 777777777777 2 11 6 2 0 5 0
consensus : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TG--T-CA-GTAT---TT-ATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
Reference ( family-705 ) : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TG--TGCA-GTAT---TT-ATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
gi|1 : CATTAC-TTATCTAAGTAGA-ACGTAAAAA-CTTAAAGT-TGCATGCA-GTAT---GT-ATGCAGGCATTTAAGTA-TGTTT-TACTTATATCTGTG--------TACATTTCTGCATGCCTTA-AGT--TTTTAAGTATTTAT-TTAAA------GCTTAAAGTTC--ATGTTGGTGAAA-CTTGGTTCCGG-CAA-ACTAAGATAA
gi|10 : taagtttTAAGTAGATAAGTAGCA--TTTAAAGT--G--T-TA-G-AC---TA-AT------ATTTAGGTTATGCTT--ACTTAAATCAGTA---------------CTGCATGCTTAA-AAT--TTTGAAGTATTTAC-TT--A------GC-T-AAGTAT--ATGTTTGTGAAA-TTCatattcagtgttcaggaacggtagatttcagtctaaattcaaaata
gi|11 : aATATAAGTT-TGGGT-TACTTATATCAGGA--------TATATTTATGCATGTCTTATAA----TTTAAGTATTTAC-TT-A--------TCT-AAGTTA--GTGTTGG-GAAATCTCAATCCAGG-TAA-ATCAACACAA
gi|12 : TGT---TT-ATGTGAACATTTAAATT-TGTTT-TACTCAAATCAATA--------TACA-TTCTGCATGTCATG-AGT--GTTTATGTATTTGC-AT--A------GC-T-AGGTTA--ATGTTTGTGAAA-CTCGA
gi|13 : aGTA--------TACGTTTCTGCATGGTTCA-AGT--TTGTAAGTAATTAT-TT--A------GC-T-GAGTTA--ATTTTGGTGAAA-CTTGATCCAGG-TGGTaact
gi|14 : T-TACTTAACTCAGTA--------CG-AGTTCTATATTTTTTT-AAC--TTTTG-GTATTTAC-TT-A--------TCT-AGGTTA--ATGTTGGTAAAA-CTCAATCCcagctttcaaatatat
gi|15 : tagttagaaTTCTGCAAGCTTTA-AGT--TTTTGCGGATTTAT-TT-AAAGTTCTATTT-AAGGTA--AGGTTGGTG-AA-TTTGACTCGGGACAGTATTAA
gi|16 : CTTTAATCAGTG--------TGAATTTGTGCATGCTTAG-AAT--TTTTATGTATTTAC-TT-AA--------CT-GAGTTA--ATATTAGTGAAA-CTg
gi|17 : tcttTAAACA-CTTAAGAA-TG---GCA-ATAT---TT-ACGGAGGCAGTTTATTT-TGCTT-TGCGTAAATCCGTA--------AACATTTCTGCATGta
gi|18 : gTTT-TACTTAAACCTGTA--------AACATTTCTGTATGCCTCA-CGC--TAATAAGAATTTACATT-A--------CT----ATT---ATGTTGCTGAAA-CT
gi|19 : TCTGTATGTTTTA-AAT--TTTTAAGTATTTAC-TT--A------GC-T-GAGTTA--ATGTTGGTGAAA-
gi|2 : tgtgagtaTAGGCATTAAAGAC-CGTTT-CACTGAAATCAGTA--------TACATTTCTGCATATTTTA-AGT--TGTTAAATATTAAC-TT-AG--------TT-AAATTT--ATGTATATGAAA-CTTGACCC
gi|20 : taactaagtagaa--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-tgctttcataatatataaatatgttttgcagtaatttaggttttgattaagcttaaatt
gi|21 : tcga--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-ta
gi|3 : ggaTATATATTTAAAAA-T----AGT-TA-----A-GTATAAATT-ATAAAGACATTTAAGCG-GGTTT--ACTAAAA-CAGTA--------TACATTTCTGCATGTTTGA-AGT--GTGTAAGTACTTAT-TC-AA--------T-----TTA--ATTGTGGTGAAA-CTTGGTCCAGG-TAta
gi|4 : ATACTTAAAAA-CT-AAAGT--G--TA-A-ATGT---TC-ATGTATGCACCTAAGTT-AATTT-TACTTTAGTCGGTA--------TACCGTTCTGCATACTTTG-AGCACTGTT--GTATTTAC-TT-A--------CCT-AAATTA--ATACTGGTGAAA-CTCAATCCttcaggatcatgtaatttatatttcgaagt
gi|5 : gaaataatgcTTACCTTAACTAAGTAAATATTTAAAAA-CTTAAA-C-TG--T-CA-ATAT---TTTATATAGCCATTTAAGTT-TCTTT-TATTTAAATCTGTATACATTGCTACATTTCTGCATGTTTGA-AGT--T
gi|6 : aacatAAGTAAATACCTAAAAA-CCTAAAAT--G--TTTA--TAT---TC-ATGTATGCATTTAAGTT-TGTTT-TTATTAAATCAGAA--------TGAATGTCTGCATGTTTTA-AGT--TTTCAAGTATTTAC-TT--A------GC-T-ACGGTA--ATGTT-GTGAAA-CTCatgctaatgttggtgag
gi|7 : AAGTAAATACTTAAACATCTTA---------------TAT---AC-ATGTAAGCAGCTGAGTT-TGTTT-TATTTAAATCTGTA--------TACATTTCTGCATGATTTA-AGA--TTTC-AGTAGTAAC-T---A------ATTT-AAAGTATTATGTTGAGGAAA-TTTGGTCCAGa
gi|8 : TAAGTAGATACTT-AAAA-CTTGAAGTCTG--TTTA--TGT---TT-A--TAGGCATGTA--TT-TGTTTCTACTT-ATTCAGTT--------T--ATCTCTGCATGTTTTA-AGT--TTTTAAGTATTT---TT-TA------GC-T-AAGCTT--GTGCTGGTTAAG-TTC
gi|9 : TAC-TTGCTCAAGTAGATACTAAAAAAACTGAAAGT--G--TGAATGTTT---TT--TTTA-----TTATGTG-TGTTT-TACTTAAATCAGTG--------TATGTTTATGCATGTTTTA-TGT--TTCTAAATATTacgca
Alignments
lowQualScore : 1 2222222222 444444444444 1
lowQualScore : 3 1 8 0 0 5555555555 3 666 2 1 3 2 88888888 0 2 22 2 333333333333 2 33 0 2 8 5 1
lowQualScore : . . . . . .......... . ... . . . . ........ . . .. . ............ . .. . . . . .
lowQualScore : 3 0 0 7 7 8888888888 6 444 0 0 1 7 55555555 7 2 88 2 777777777777 2 11 6 2 0 5 0
consensus : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TGT---CAATA-T---TTATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
Reference ( family-705 ) : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TGT---CAGTA-T---TTATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
gi|1 : CATTAC-TTATCTAAGTAGA-ACGTAAAAA-CTTAAAGT-TGCATGCAGTA-T---GTATGCAGGCATTTAAGTA-TGTTT-TACTTATATCTGTG--------TACATTTCTGCATGCCTTA-AGT--TTTTAAGTATTTAT-TTAAA------GCTTAAAGTTC--ATGTTGGTGAAA-CTTGGTTCCGG-CAA-ACTAAGATAA
gi|10 : taagtttTAAGTAGATAAGTAGCA--TTTAAAGT--GT---TAG-A-C---TAAT------ATTTAGGTTATGCTT--ACTTAAATCAGTA---------------CTGCATGCTTAA-AAT--TTTGAAGTATTTAC-TT--A------GC-T-AAGTAT--ATGTTTGTGAAA-TTCatattcagtgttcaggaacggtagatttcagtctaaattcaaaata
gi|11 : aATATAAGTT-TGGGT-TACTTATATCAGGA--------TATATTTATGCATGTCTTATAA----TTTAAGTATTTAC-TT-A--------TCT-AAGTTA--GTGTTGG-GAAATCTCAATCCAGG-TAA-ATCAACACAA
gi|12 : TG-T---TTATGTGAACATTTAAATT-TGTTT-TACTCAAATCAATA--------TACA-TTCTGCATGTCATG-AGT--GTTTATGTATTTGC-AT--A------GC-T-AGGTTA--ATGTTTGTGAAA-CTCGA
gi|13 : aGTA--------TACGTTTCTGCATGGTTCA-AGT--TTGTAAGTAATTAT-TT--A------GC-T-GAGTTA--ATTTTGGTGAAA-CTTGATCCAGG-TGGTaact
gi|14 : T-TACTTAACTCAGTA--------CG-AGTTCTATATTTTTTT-AAC--TTTTG-GTATTTAC-TT-A--------TCT-AGGTTA--ATGTTGGTAAAA-CTCAATCCcagctttcaaatatat
gi|15 : tagttagaaTTCTGCAAGCTTTA-AGT--TTTTGCGGATTTAT-TT-AAAGTTCTATTT-AAGGTA--AGGTTGGTG-AA-TTTGACTCGGGACAGTATTAA
gi|16 : CTTTAATCAGTG--------TGAATTTGTGCATGCTTAG-AAT--TTTTATGTATTTAC-TT-AA--------CT-GAGTTA--ATATTAGTGAAA-CTg
gi|17 : tcttTAAACA-CTTAAGAA-TGG---CAATA-T---TTACGGAGGCAGTTTATTT-TGCTT-TGCGTAAATCCGTA--------AACATTTCTGCATGta
gi|18 : gTTT-TACTTAAACCTGTA--------AACATTTCTGTATGCCTCA-CGC--TAATAAGAATTTACATT-A--------CT----ATT---ATGTTGCTGAAA-CT
gi|19 : TCTGTATGTTTTA-AAT--TTTTAAGTATTTAC-TT--A------GC-T-GAGTTA--ATGTTGGTGAAA-
gi|2 : tgtgagtaTAGGCATTAAAGAC-CGTTT-CACTGAAATCAGTA--------TACATTTCTGCATATTTTA-AGT--TGTTAAATATTAAC-TT-AG--------TT-AAATTT--ATGTATATGAAA-CTTGACCC
gi|20 : taactaagtagaa--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-tgctttcataatatataaatatgttttgcagtaatttaggttttgattaagcttaaatt
gi|21 : tcga--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-ta
gi|3 : ggaTATATATTTAAAAA-T----AGT-TA-----AGTA-TAAATTATAAAGACATTTAAGCG-GGTTT--ACTAAAA-CAGTA--------TACATTTCTGCATGTTTGA-AGT--GTGTAAGTACTTAT-TC-AA--------T-----TTA--ATTGTGGTGAAA-CTTGGTCCAGG-TAta
gi|4 : ATACTTAAAAA-CT-AAAGT--GT---AAATG-T---TCATGTATGCACCTAAGTT-AATTT-TACTTTAGTCGGTA--------TACCGTTCTGCATACTTTG-AGCACTGTT--GTATTTAC-TT-A--------CCT-AAATTA--ATACTGGTGAAA-CTCAATCCttcaggatcatgtaatttatatttcgaagt
gi|5 : gaaataatgcTTACCTTAACTAAGTAAATATTTAAAAA-CTTAAA-C-TGT---CAATATT---TTATATAGCCATTTAAGTT-TCTTT-TATTTAAATCTGTATACATTGCTACATTTCTGCATGTTTGA-AGT--T
gi|6 : aacatAAGTAAATACCTAAAAA-CCTAAAAT--GT---TTATA-T---TCATGTATGCATTTAAGTT-TGTTT-TTATTAAATCAGAA--------TGAATGTCTGCATGTTTTA-AGT--TTTCAAGTATTTAC-TT--A------GC-T-ACGGTA--ATGTT-GTGAAA-CTCatgctaatgttggtgag
gi|7 : AAGTAAATACTTAAACATCTTA--------------TA-T---ACATGTAAGCAGCTGAGTT-TGTTT-TATTTAAATCTGTA--------TACATTTCTGCATGATTTA-AGA--TTTC-AGTAGTAAC-T---A------ATTT-AAAGTATTATGTTGAGGAAA-TTTGGTCCAGa
gi|8 : TAAGTAGATACTT-AAAA-CTTGAAGTCTGT---TTATG-T---TTA--TAGGCATGTA--TT-TGTTTCTACTT-ATTCAGTT--------T--ATCTCTGCATGTTTTA-AGT--TTTTAAGTATTT---TT-TA------GC-T-AAGCTT--GTGCTGGTTAAG-TTC
gi|9 : TAC-TTGCTCAAGTAGATACTAAAAAAACTGAAAGT--GT---GAATG-T---TTTTTT---TATT-ATGTG-TGTTT-TACTTAAATCAGTG--------TATGTTTATGCATGTTTTA-TGT--TTCTAAATATTacgca
Alignments
lowQualScore : 1 22222222 444444444444 1
lowQualScore : 3 1 8 0 0 55555555 3 666 2 1 3 2 88888888 0 2 22 2 333333333333 2 33 0 2 8 5 1
lowQualScore : . . . . . ........ . ... . . . . ........ . . .. . ............ . .. . . . . .
lowQualScore : 3 0 0 7 7 11111111 6 444 0 0 1 7 55555555 7 2 88 2 777777777777 2 11 6 2 0 5 0
consensus : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TGT---CAATA-T---TTATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
Reference ( family-705 ) : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TGT---CAATA-T---TTATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
gi|1 : CATTAC-TTATCTAAGTAGA-ACGTAAAAA-CTTAAAGT-TGCATGCAGTA-T---GTATGCAGGCATTTAAGTA-TGTTT-TACTTATATCTGTG--------TACATTTCTGCATGCCTTA-AGT--TTTTAAGTATTTAT-TTAAA------GCTTAAAGTTC--ATGTTGGTGAAA-CTTGGTTCCGG-CAA-ACTAAGATAA
gi|10 : taagtttTAAGTAGATAAGTAGCA--TTTAAAGT--GT---TAG-A-C---TAAT------ATTTAGGTTATGCTT--ACTTAAATCAGTA---------------CTGCATGCTTAA-AAT--TTTGAAGTATTTAC-TT--A------GC-T-AAGTAT--ATGTTTGTGAAA-TTCatattcagtgttcaggaacggtagatttcagtctaaattcaaaata
gi|11 : aATATAAGTT-TGGGT-TACTTATATCAGGA--------TATATTTATGCATGTCTTATAA----TTTAAGTATTTAC-TT-A--------TCT-AAGTTA--GTGTTGG-GAAATCTCAATCCAGG-TAA-ATCAACACAA
gi|12 : ATG-T---TTATGTGAACATTTAAATT-TGTTT-TACTCAAATCAATA--------TACA-TTCTGCATGTCATG-AGT--GTTTATGTATTTGC-AT--A------GC-T-AGGTTA--ATGTTTGTGAAA-CTCGA
gi|13 : GTA--------TACGTTTCTGCATGGTTCA-AGT--TTGTAAGTAATTAT-TT--A------GC-T-GAGTTA--ATTTTGGTGAAA-CTTGATCCAGG-TGGTaact
gi|14 : T-TACTTAACTCAGTA--------CG-AGTTCTATATTTTTTT-AAC--TTTTG-GTATTTAC-TT-A--------TCT-AGGTTA--ATGTTGGTAAAA-CTCAATCCcagctttcaaatatat
gi|15 : tagttagaaTTCTGCAAGCTTTA-AGT--TTTTGCGGATTTAT-TT-AAAGTTCTATTT-AAGGTA--AGGTTGGTG-AA-TTTGACTCGGGACAGTATTAA
gi|16 : CTTTAATCAGTG--------TGAATTTGTGCATGCTTAG-AAT--TTTTATGTATTTAC-TT-AA--------CT-GAGTTA--ATATTAGTGAAA-CTg
gi|17 : tcttTAAACA-CTTAAGAA-TGG---CAATA-T---TTACGGAGGCAGTTTATTT-TGCTT-TGCGTAAATCCGTA--------AACATTTCTGCATGta
gi|18 : gTTT-TACTTAAACCTGTA--------AACATTTCTGTATGCCTCA-CGC--TAATAAGAATTTACATT-A--------CT----ATT---ATGTTGCTGAAA-CT
gi|19 : TCTGTATGTTTTA-AAT--TTTTAAGTATTTAC-TT--A------GC-T-GAGTTA--ATGTTGGTGAAA-
gi|2 : tgtgagtaTAGGCATTAAAGAC-CGTTT-CACTGAAATCAGTA--------TACATTTCTGCATATTTTA-AGT--TGTTAAATATTAAC-TT-AG--------TT-AAATTT--ATGTATATGAAA-CTTGACCC
gi|20 : taactaagtagaa--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-tgctttcataatatataaatatgttttgcagtaatttaggttttgattaagcttaaatt
gi|21 : tcga--TTTTAAGTATTTAC-TT--A------GC-T-AAGTTA--ATGTTTGTGAAA-ta
gi|3 : ggaTATATATTTAAAAA-T----AGT-TA-----AGTA-TAAATTATAAAGACATTTAAGCG-GGTTT--ACTAAAA-CAGTA--------TACATTTCTGCATGTTTGA-AGT--GTGTAAGTACTTAT-TC-AA--------T-----TTA--ATTGTGGTGAAA-CTTGGTCCAGG-TAta
gi|4 : ATACTTAAAAA-CT-AAAGT--GT---AAATG-T---TCATGTATGCACCTAAGTT-AATTT-TACTTTAGTCGGTA--------TACCGTTCTGCATACTTTG-AGCACTGTT--GTATTTAC-TT-A--------CCT-AAATTA--ATACTGGTGAAA-CTCAATCCttcaggatcatgtaatttatatttcgaagt
gi|5 : gaaataatgcTTACCTTAACTAAGTAAATATTTAAAAA-CTTAAA-C-TGT---CAATATT---TTATATAGCCATTTAAGTT-TCTTT-TATTTAAATCTGTATACATTGCTACATTTCTGCATGTTTGA-AGT--T
gi|6 : aacatAAGTAAATACCTAAAAA-CCTAAAAT--GT---TTATA-T---TCATGTATGCATTTAAGTT-TGTTT-TTATTAAATCAGAA--------TGAATGTCTGCATGTTTTA-AGT--TTTCAAGTATTTAC-TT--A------GC-T-ACGGTA--ATGTT-GTGAAA-CTCatgctaatgttggtgag
gi|7 : AAGTAAATACTTAAACATCTT--------------ATA-T---ACATGTAAGCAGCTGAGTT-TGTTT-TATTTAAATCTGTA--------TACATTTCTGCATGATTTA-AGA--TTTC-AGTAGTAAC-T---A------ATTT-AAAGTATTATGTTGAGGAAA-TTTGGTCCAGa
gi|8 : TAAGTAGATACTT-AAAA-CTTGAAGTCTGT---TTATG-T---TTA--TAGGCATGTA--TT-TGTTTCTACTT-ATTCAGTT--------T--ATCTCTGCATGTTTTA-AGT--TTTTAAGTATTT---TT-TA------GC-T-AAGCTT--GTGCTGGTTAAG-TTC
gi|9 : TAC-TTGCTCAAGTAGATACTAAAAAAACTGAAAGT--GT---GAATG-T---TTTTTT---TATT-ATGTG-TGTTT-TACTTAAATCAGTG--------TATGTTTATGCATGTTTTA-TGT--TTCTAAATATTacgca
blockSeqs : C A T CTGTT T AAA G A A C TACATTGC T AC A AAAGTTCTATT . TT T A T C
blockSeqs : . C A TGGC . . G G . . . . . . AATT . . . . T
blockSeqs : . TGTC . . A G . . . . . . TAGC . . . . .
blockSeqs : . GTT . . G G . . . . . . AGC . . . .
blockSeqs : . GTA . . A T . . . . . . ATC . . .
blockSeqs : . GTT . . G G . . . . . . AGC . . .
blockSeqs : . GTG . . G T . . . . . . AGC . . .
blockSeqs : . TA . . T A . . . . . . ATC . . .
blockSeqs : . . . . . G . . . . . . AAC . . .
blockSeqs : . . . . . . . . . . ACT . . .
blockSeqs : . . . . . . . AGC . . .
blockSeqs : . . . . . . AGT . . .
blockSeqs : . . . . . AGC . . .
blockSeqs : . . . . . AGC . . .
blockSeqs : . . . . AAT . . .
blockSeqs : . . . . ACC . . .
blockSeqs : . . . AGC . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : GTN***** AGC*********
originalCons : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGT-TGT---CAATA-T---TTATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT-AA------GCTT-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
finalCons : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-CTTAAAGTGTN-----AATA-T---TTATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTA--------TACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TTAGC---------T-AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
Alignments
lowQualScore : 1 1
lowQualScore : 3 1 8 55 66666 4 9999 0 3 2 1 3 2 0 2 22 2 22 888888888 22 22 0 2 8 5 1
lowQualScore : . . . .. ..... . .... . . . . . . . . .. . .. ......... .. .. . . . . .
lowQualScore : 3 0 0 55 00000 0 4444 9 6 0 0 1 7 7 2 88 1 99 555555555 99 99 1 2 0 5 0
consensus : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-C--TTAA-AG--T-GTN---AATATTT-ATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTATACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT--AG--------CT--AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
Reference ( family-705 ) : NNNNNNNCATTAC-TTANCTAAGTAGATACTTAAAAA-C--TTAA-AG--T-GTN---AATATTT-ATGTAGGCATTTAAGTT-TGTTT-TACTTAAATCAGTATACATTTCTGCATGTTTTA-AGT--TTTTAAGTATTTAC-TT--AG--------CT--AAGTTA--ATGTTGGTGAAA-CTCGATCCAGG-TAGTATTAANACAA
gi|1 : CATTAC-TTATCTAAGTAGA-ACGTAAAAA-C--TTAA-AG--TTGCATGCAGTATGT-ATGCAGGCATTTAAGTA-TGTTT-TACTTATATCTGTGTACATTTCTGCATGCCTTA-AGT--TTTTAAGTATTTAT-TTAAAG--------CTTAAAGTTC--ATGTTGGTGAAA-CTTGGTTCCGG-CAA-ACTAAGATAA
gi|10 : taagtttTAAGTAGATAAGTAGCA--T--TTAA-AG--T-GTT---AG-ACTA-AT------ATTTAGGTTATGCTT--ACTTAAATCAGTA-------CTGCATGCTTAA-AAT--TTTGAAGTATTTAC-TT--AG--------CT--AAGTAT--ATGTTTGTGAAA-TTCatattcagtgttcaggaacggtagatttcagtctaaattcaaaata
gi|11 : aATATAAGTT-TGGGT-TACTTATATCAGGATATATTTATGCATGTCTTATAAT--TT--AAGTATTTAC-TT--AT--------CT--AAGTTA--GTGTTGG-GAAATCTCAATCCAGG-TAA-ATCAACACAA
gi|12 : ATGTTT-ATGTGAACATTTAAATT-TGTTT-TACTCAAATCAATATACATT-CTGCATGTCATG-AGT--GTTTATGTATTTGC-AT--AG--------CT--AGGTTA--ATGTTTGTGAAA-CTCGA
gi|13 : GTATACGTTTCTGCATGGTTCA-AGT--TTGTAAGTAATTAT-TT--AG--------CT--GAGTTA--ATTTTGGTGAAA-CTTGATCCAGG-TGGTaact
gi|14 : T-TACTTAACTCAGTACG-AGTTCTATATTTTTTT-AAC--TTTTG-GTATTTAC-TT--AT--------CT--AGGTTA--ATGTTGGTAAAA-CTCAATCCcagctttcaaatatat
gi|15 : tagttagaaTTCTGCAAGCTTTA-AGT--TTTTGCGGATTTAT-TT--AAAGTTCTATTT--AAGGTA--AGGTTGGTG-AA-TTTGACTCGGGACAGTATTAA
gi|16 : CTTTAATCAGTGTGAATTTGTGCATGCTTAG-AAT--TTTTATGTATTTAC-TT--AA--------CT--GAGTTA--ATATTAGTGAAA-CTg
gi|17 : tcttTAAACA-C--TTAAGAA--T-GGC---AATATTT-ACGGAGGCAGTTTATTT-TGCTT-TGCGTAAATCCGTAAACATTTCTGCATGta
gi|18 : gTTT-TACTTAAACCTGTAAACATTTCTGTATGCCTCA-CGC--TAATAAGAATTTACATT--A---------CT--A--TT---ATGTTGCTGAAA-CT
gi|19 : TCTGTATGTTTTA-AAT--TTTTAAGTATTTAC-TT--AG--------CT--GAGTTA--ATGTTGGTGAAA-
gi|2 : tgtgagtaTAGGCATTAAAGAC-CGTTT-CACTGAAATCAGTATACATTTCTGCATATTTTA-AGT--TGTTAAATATTAAC-TT--AG--------TT--AAATTT--ATGTATATGAAA-CTTGACCC
gi|20 : taactaagtagaa--TTTTAAGTATTTAC-TT--AG--------CT--AAGTTA--ATGTTTGTGAAA-tgctttcataatatataaatatgttttgcagtaatttaggttttgattaagcttaaatt
gi|21 : tcga--TTTTAAGTATTTAC-TT--AG--------CT--AAGTTA--ATGTTTGTGAAA-ta
gi|3 : ggaTATATATTTAAAAA-TAGTTAA--G--T-ATA---AAT---T-ATAAAGACATTTAAGCG-GGTTT--ACTAAAA-CAGTATACATTTCTGCATGTTTGA-AGT--GTGTAAGTACTTAT-T--------------C--AATTTA--ATTGTGGTGAAA-CTTGGTCCAGG-TAta
gi|4 : ATACTTAAAAA-C--T-AA-AG--T-GTA---AATGTTC-ATGTATGCACCTAAGTT-AATTT-TACTTTAGTCGGTATACCGTTCTGCATACTTTG-AGCACTGTT--GTATTTAC-TT--AC--------CT--AAATTA--ATACTGGTGAAA-CTCAATCCttcaggatcatgtaatttatatttcgaagt
gi|5 : gaaataatgcTTACCTTAACTAAGTAAATATTTAAAAA-C--TTAA-AC--T-GTC---AATATTTTATATAGCCATTTAAGTT-TCTTT-TATTTAAATCTGTATACATTGCTACAT-TTCTG-CAT--GTTTGA-------------AG--------TT--ATGCTA--ATGTTGGTGA
gi|6 : aacatAAGTAAATACCTAAAAA-C--CTAA-AA--T-GTT---TATATTC-ATGTATGCATTTAAGTT-TGTTT-TTATTAAATCAGAATGAATGTCTGCATGTTTTA-AGT--TTTCAAGTATTTAC-TT--AG--------CT--ACGGTA--ATGTT-GTGAAA-CTCg
gi|7 : AAGTAAATACTTAAACATC--TT----------------ATATAC-ATGTAAGCAGCTGAGTT-TGTTT-TATTTAAATCTGTATACATTTCTGCATGATTTA-AGA--TTTC-AGTAGTAAC-TA--AT--------TT--AAAGTATTATGTTGAGGAAA-TTTGGTCCAGa
gi|8 : TAAGTAGATACTT-AAAA-C--TTGA-AGTCT-GTT---TATGTTT-A--TAGGCATGTA--TT-TGTTTCTACTT-ATTCAGTTT--ATCTCTGCATGTTTTA-AGT--TTTTAAGTATTT-T-TT--AG--------CT--AAGCTT--GTGCTGGTTAAG-TTC
gi|9 : TAC-TTGCTCAAGTAGATACTAAAAAAAC--TGAA-AG--T-GTG---AATGTTT-TTTT---TATT-ATGTG-TGTTT-TACTTAAATCAGTGTATGTTTATGCATGTTTTA-TGT--TTCTAAATATTacgca