lowQualScore : 1111111111111111111111111111111111111 111111111111111
lowQualScore : 4444444444444444444444444444444444444 2 55555555 11 11 33333 1 11 1 444444444444444 777777777 1 2222 222 22222 333 22222 111111 11 777
lowQualScore : 4444444444444444444444444444444444444 8 22222222 4 1 88 88 33333 2 11 6 888 2 6 0 0 666666666666666 888888888 88 6 3333 999 7 99999 000 11 4 0 1 5 1 22 3 0 5 55555 22222 888888 555 1 2 4 888888 7 22 000
lowQualScore : ..................................... . ........ . . .. .. ..... . .. . ... . . . . ............... ......... .. . .... ... . ..... ... .. . . . . . .. . . . ..... ..... ...... ... . . . ...... . .. ...
lowQualScore : 5555555555555555555555555555555555555 5 00000000 0 0 33 33 33333 0 00 0 333 0 0 7 7 777777777777777 000000000 55 0 5555 777 3 33333 333 55 2 2 2 6 8 00 9 7 2 55555 77777 888888 111 6 6 0 222222 0 00 000
consensus : NTGAAATGGT-----CATCTTATTATTTGTNATACCAATTGTANTCATTCTGGAGTTTTTTTTANTCGNAGTTTNACGTCATTTTCAACACATTTCA--GGT--TATA-----TATGGCATATCCAGTTTTATCGGTTGAGGAAAACTTCAGAATGGAT---ATTGAGTAGAACCAGNNNTCCTTCCNCAAGTGACTNGCNAGCTCT-TCACATAACG---GTTTT--GGAACGAGCTGGATTCAAACCCACGACCTCAGCGGTGAGAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATTTTT---TTTTAAA
Reference ( gi|2 ) : ATGAAATGGTGTGTTTGTCTT-TGATTTATTA-----ATT-TATTT-TTTTAATATTTTTTTGAAT-GGGGTTTTACGTCATTTTCAACACATTTTA--GGT--TATA-----TATGGCATATCCAATTTTACTGGTGGAAGAAGACCTCAGGCTGAGTCAGACTGAGTAGAAC--ACCGTCATTCCGTAATTAACTGG-AAACTTT-TAACATAAAG---GTTTT--GGAACGAGCTGGATTCAAACCTACGACCTTAGTGGTGAGAGATAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAACCTTTGAATTTTAAA
gi|1 : TGAAATGGT-----CATCTTATTATTTGTAA-----AT---AATC-TTCTGG-GTTTTTTTTATT-GCAGTTTAACGTCATTTTCAACACATTTCA--GGT--TATA-----TATGGCATATCCAGTTTTACTGGTTGAGGAAGACCTCAGAATGGAT---A-TGAATAGAACC-GTAGTCCTTCCGCAAGTAACTTGCAAACTCTATCACATAAAG---TTTTT--GGAGCGAGCGGGATATGAACCTACGACCTTATTGGTGAGAGGTAAGTGA-TCT-TGAGATGCTATTTT------G--GATTACTCGGCCATGGAGGAC-CCTTTAACCC-TTTA
gi|6 : aagattttttttttagtgcaaacataacacttactggtacacaaatATTTATTATACCAATTGTATTTATTTTAAAATTTTTTT--ATCGAAGTTTTATGTCATTTTTAACCCATTATACTGGT--CATATAAATTATGACATA--CAGGTTTATCTGCAGAGGTAAACTTCActtcatatagacgcctttggacgcctctaatatagaaggcttttgaa
gi|4 : TTATTTTCAACATATTTCC--AGTTCTACA-----TATG---CATTCAGTTTTATGAGTTGAGGAAAACTT--------------TTAAGTAGAACCAAGTTTC-TTTCTCAAATGACTAG-CAGCTTTCCCACATAACGTACGTTTT-----------TGGTCTGAA----ATGACCTCATCGTTGAGAGGTAAG---------GAGAGAGCGTTCT------A--GA
gi|8 : ttttaattggaccttaaatataa-TAACA-AATT---GTTTTTCAGAACAAGCTTGATTCAAACCCACAACCTCTGTGAC--AAGGTAAGTCA--------------GCC--------A--GACCACTCTTCCATAGAGGAac
gi|7 : GGACAAACTGGGCTCAAACCTA----CTCAGTGGTAAGAAGTAAGTCA-TAC-TGAGAT-ACCTCTTGATATGA--GGCCACTCATCCAGGCAGG-T-CCCTTctc
gi|9 : TCCAACTCCACGACCTCAGCGATGGGGGATGAGTAAGTATATGAG--TATACCTT------A--AA-CACTTGGCTACGAAGGATAATTTTG--TC-caaataattcaagaattctttcaaaaccc
gi|10 : ACCACCTCAGCAGTGGCAGTTTACAGG-CAT-TGCGACAACACCTT------A--GACCAGTCAGCAACAGAGGAT--CTTTA--TA-TTTGA
gi|11 : aCCTCATTGGTAAGTGGTTACTGA-TCT-TGAGACGACG--TT------ATCGGCTACTCAGCCAATAAGAAC-CCCT
gi|15 : GGTGAGATGTAAGTGA-TGT-TG--------CCTC------A--TGGCACTCTGCCACAGAGGAT-CCTTTaac
gi|13 : gaGGTGAGGAAGAAGTGA-TAT-TAAGAT-AC-CCTT------A---ATTATTGGGCCATGGACGAT-CCTTT
gi|12 : GTGAGAGTCAAGTGA-CAT-TGAGA---CATCTT------G--TACAACTATGCCAGGGAGGGT-CTTTTC--TCATTTA
gi|18 : TGA-TAT-TGAGACAGAGCCTT------A--GACCACTCGGTCg
gi|16 : AGACGGCACCTA------A--CACCACTCGTCCACGGAGGAC-CCTCGG--TT-TTcc
gi|14 : GACAGCACCTC------A--GACCACTCAGCCATGGAGGAA-CTTTT---TA-TTT-AATTTTT---TTTTAAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): AACCCTTTACTCCATAGATACGCGTTTTCCTGCACCAATCACAGAAGGCCTTTGAAAACAGTGCAGGAAGAGTTCAGATTGCTTGTAACAATCAATCTGAACACTTCCTGCACTGTTTTCCACTCTGTCAGTTAATATAAACATAATTCACCCAATAATTCAAAAGTCTTCTATATTAGGTGTCCAAAGGCGTCTATATTAGAGGTGTCCAAAGGCATCTATATTAAAGGTGTCCAAAGGCATCTATATGAAGTAAAGGGTT
Unaligned ( gi|5 ): ATTACACAAATTACTGCTAAAACAAGGGATGGTTATTTTCATTTTACGTTTTACCATAATTGCGTTCTACACTATTTATACTGCAGTTAAACTTTATTTCCAACACATTGCATGTTATACAGTATGTAACAAACAGTTTAGTTTGGTATGATAAGTTTCTCTGATGCATCGGAACAGAACTGTCGTCCT
Unaligned ( gi|17 ): TGTAATACTTTTTAACCCTTTGCTTCATATGGACGCATTTGGA
Alignments
lowQualScore : 1 1 3333333333333333333 2222 2 1111 11 11 33333 444444444444 333333 22 2 222 11111 111 333
lowQualScore : 2 3 3 3 3333333333333333333 6666 5 1 3 1 1 7777 1 11 11 44444 8 99 44 3 2 999999999999 777777 1 3 0 1 00 0 0 6 6 333 6 1 3 2 0 2 3 3 0 3 77777 888888 444 0 1 3 333 5 1 555
lowQualScore : . . . . ................... .... . . . . . .... . .. .. ..... . .. .. . . ............ ...... . . . . .. . . . . ... . . . . . . . . . . ..... ...... ... . . . ... . . ...
lowQualScore : 0 7 3 5 0000000000000000000 5555 6 0 2 0 0 0000 0 00 00 00000 2 22 55 5 5 777777777777 000000 0 7 7 0 77 7 7 7 7 333 5 4 2 2 2 5 6 3 2 3 55555 222222 000 7 6 6 444 0 7 000
consensus : NTGAAATGGTCGTNTT-ATTNTTTGTTNTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGTT--ATA-A---TATGGCATATCCAGTTTTACCGGTNGAGGAAGACCTCAGG-TGGGT---ACTGAGTAGAACC-GNNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
Reference ( family-699 ) : NTGAAATGGTCATCTT-ATTATTTGTNATACCA--ATTGTANTCATTCTGGAGTTTTTTTTANTCGNAGTTTNAC----GTCATTTTCAACACATTTCA--GGTT--ATA-----TATGGCATATCCAGTTTTATCGGTTGAGGAAAACTTCAGAATGGAT---ATTGAGTAGAACCAGNNNTCCTTCCNCAAGTGACTNGCNAGCTCT-TCACATAACG---GTTTTGGAACGAGCTGGATTCAAACCCACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATTTTT---TTTTAAA
gi|1 : TGAAATGGTCATCTT-ATTATTTGTAA----------ATAATC-TTCTGG-GTTTTTTTTATT-GCAGTTTAAC----GTCATTTTCAACACATTTCA--GGTT--ATA-----TATGGCATATCCAGTTTTACTGGTTGAGGAAGACCTCAGAATGGAT---A-TGAATAGAACC-GTAGTCCTTCCGCAAGTAACTTGCAAACTCTATCACATAAAG---TTTTTGGAGCGAGCGGGATATGAACCTACGACCTTATTGGTGA-GAGGTAAGTGA-TCT-TGAGATGCTATTTT------G--GATTACTCGGCCATGGAGGAC-CCTTTAACCC-TTTA
gi|10 : aagattttttttttagtgcaaacataacacttactggtacacaaatACCACCTCAGCAGTGG-CAGTTTACAGG-CAT-TGCGACAACACCTT------A--GACCAGTCAGCAACAGAGGAT--CTTTA--TA-TTTGActtcatatagacgcctttggacgcctctaatatagaaggcttttgaa
gi|11 : aCCTCATTGGTAA-GTGGTTACTGA-TCT-TGAGACGACG--TT------ATCGGCTACTCAGCCAATAAGAAC-CCCT
gi|12 : GTGA-GAGTCAAGTGA-CAT-TGAGA---CATCTT------G--TACAACTATGCCAGGGAGGGT-CTTTTC--TCATTTAaac
gi|13 : GGTGA-GGAAGAAGTGA-TAT-TAAGAT-AC-CCTT------A---ATTATTGGGCCATGGACGAT-CCTTTg
gi|14 : GACAGCACCTC------A--GACCACTCAGCCATGGAGGAA-CTTTT---TA-TTT-AATTTTT---TTTTAAA
gi|15 : GGTGA-GATGTAAGTGA-TGT-TG--------CCTC------A--TGGCACTCTGCCACAGAGGAT-CCTTT
gi|16 : gaAGACGGCACCTA------A--CACCACTCGTCCACGGAGGAC-CCTCGG--TT-TT
gi|18 : TGA-TAT-TGAGACAGAGCCTT------A--GACCACTCGGTC
gi|2 : TGAAATGGT-GTGTT-TGTCTTTGATTTATTA--ATT-TATTT-TTTTAATATTTTTTTGAAT-GGGGTTTTAC----GTCATTTTCAACACATTTTA--GGTT--ATA-----TATGGCATATCCAATTTTACTGGTGGAAGAAGACCTCAGGCTGAGTCAGACTGAGTAGAAC--ACCGTCATTCCGTAATTAACTGG-AAACTTT-TAACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTTAGTGGTGA-GAGATAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAACCTTTGAATTTTAAAcc
gi|4 : aTTTTAATTGGACCTTAAATATAATTATTTTCAACATATTTCC--AGTTCTACA-----TATG---CATTCAGTTTTATGAGTTGAGGAAAACTT--------------TTAAGTAGAACCA-AGTTTCTTTCTCAAATGACTAGC-AGCTTTCCCACATAACGTACGTTTT---------TGGTCTGAA----ATGACCTCATCGTTGA-GAGGTAAG---------GAGAGAGCGTTCT------A--GA
gi|5 : ATGGTTATTTTCATTTTACGTTTTACCATAATTG----CGTTCTACA-CTATTTATACT-GCAGTTAAAC----TTTATTTCCAACACATTGCA--TGTT--ATACAG--TATGTAACAAACAGTTTac
gi|6 : attacacaaattactgctaaaacaagggATTTATTATACCA--ATTGTATTTATTTTAAAATTTTTTT--ATCGAAGTTTTAT----GTCATTTTTAACCCATTATACTGGTC--ATATAAATTATGACATA--CAGGTTTATCTGCAGAGGTAAACTTCAagtttggtatgataagtttctctgatgcatcggaacagaactgtcgtcct
gi|7 : GGACAAACTGGGCTCAAACCTA----CTCAGTGGTAA-GAAGTAAGTCA-TAC-TGAGAT-ACCTCTTGATATGA--GGCCACTCATCCAGGCAGG-T-CC-------C-TTCAAAT
gi|8 : TTTCAGAACAAGCTTGATTCAAACCCACAACCT---CTGTGACAAGGTAAGTCA--------------GCC--------A--GACCACTCTTCCATAGAGGAaattcaagaattctttcaaaaccc
gi|9 : taacaaattgttTCCAACTCCACGACCTCAGCGATGG-GGGATGAGTAAGTATATGAG--TATACCTT------A--AA-CACTTGGCTACGAAGGATAATTTTG--TC-ctc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AACCCTTTACTCCATAGATACGCGTTTTCCTGCACCAATCACAGAAGGCCTTTGAAAACAGTGCAGGAAGAGTTCAGATTGCTTGTAACAATCAATCTGAACACTTCCTGCACTGTTTTCCACTCTGTCAGTTAATATAAACATAATTCACCCAATAATTCAAAAGTCTTCTATATTAGGTGTCCAAAGGCGTCTATATTAGAGGTGTCCAAAGGCATCTATATTAAAGGTGTCCAAAGGCATCTATATGAAGTAAAGGGTT
Unaligned ( gi|17 ): TGTAATACTTTTTAACCCTTTGCTTCATATGGACGCATTTGGA
Alignments
lowQualScore : 11 1 222222222222 111 1 1111 11 11 3333333 1111 5555555555555 1 222 11111 111 222
lowQualScore : 22 1 3 1 77 00 999999999999 777 5 1 6 1 1 7777 1 11 11 4444444 8 99 5 5555 99 1 1 8888888888888 6 22 1 1 6 3 333 6 1 3 0 2 3 3 0 3 77777 888888 444 0 1 3 333 5 1 111
lowQualScore : .. . . . .. .. ............ ... . . . . . .... . .. .. ....... . .. . .... .. . . ............. . .. . . . . ... . . . . . . . . . ..... ...... ... . . . ... . . ...
lowQualScore : 77 0 3 0 88 55 222222222222 555 6 0 0 0 4 0000 0 00 00 6666666 2 22 6 2222 00 4 0 5555555555555 5 00 0 0 7 3 333 5 4 2 2 5 6 3 2 3 55555 222222 000 7 6 6 444 0 7 000
consensus : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
Reference ( family-699 ) : NTGAAATGGTCGTNTT-ATTNTTTGTTNTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--CCGGT-NGAGGAAGACCTCAG-G-TGGGT---ACTGAGTAGAACCGNNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
gi|1 : TGAAATGGTCATCTT-ATTATTTGT------A--A--ATAATC-TTCTGGG-TTTTTTTTATT-GCAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT----A--TATGGCATATCCAGTTTTA--CTGGT-TGAGGAAGACCTCAGAA-TGGAT---A-TGAATAGAACCGTAGTCCTTCCGCAAGTAACTTGCAAACTCTATCACATAAAG---TTTTTGGAGCGAGCGGGATATGAACCTACGACCTTATTGGTGA-GAGGTAAGTGA-TCT-TGAGATGCTATTTT------G--GATTACTCGGCCATGGAGGAC-CCTTTAACCC-TTTA
gi|10 : aagattttttttttagtgcaaacataacacttactggtacacaaatACCACCTCAGCAGTGG-CAGTTTACAGG-CAT-TGCGACAACACCTT------A--GACCAGTCAGCAACAGAGGAT--CTTTA--TA-TTTGActtcatatagacgcctttggacgcctctaatatagaaggcttttgaa
gi|11 : aCCTCATTGGTAA-GTGGTTACTGA-TCT-TGAGACGACG--TT------ATCGGCTACTCAGCCAATAAGAAC-CCCT
gi|12 : GTGA-GAGTCAAGTGA-CAT-TGAGA---CATCTT------G--TACAACTATGCCAGGGAGGGT-CTTTTC--TCATTTAaac
gi|13 : GGTGA-GGAAGAAGTGA-TAT-TAAGAT-AC-CCTT------A---ATTATTGGGCCATGGACGAT-CCTTTg
gi|14 : GACAGCACCTC------A--GACCACTCAGCCATGGAGGAA-CTTTT---TA-TTT-AATTTTT---TTTTAAA
gi|15 : GGTGA-GATGTAAGTGA-TGT-TG--------CCTC------A--TGGCACTCTGCCACAGAGGAT-CCTTT
gi|16 : gaAGACGGCACCTA------A--CACCACTCGTCCACGGAGGAC-CCTCGG--TT-TT
gi|18 : TGA-TAT-TGAGACAGAGCCTT------A--GACCACTCGGTC
gi|2 : TGAAATGGT-GTGTT-TGTCTTTGATTTATTA--ATT-TATTT-TTTTAATATTTTTTTGAAT-GGGGTTTTAC----GTCATTTTCAACACATTTTA--GGT--TAT--A----TATGGCATATCCAATTTTA--CTGGT-GGAAGAAGACCTCAG-GCTGAGTCAGACTGAGTAGAAC-ACCGTCATTCCGTAATTAACTGG-AAACTTT-TAACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTTAGTGGTGA-GAGATAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAACCTTTGAATTTTAAAcc
gi|4 : aTTTTAATTGGACCTTAAATATAATTATTTTCAACATATTTCC--AGT--TCT--ACA--TATG---CATTCAGTTTTA--TGAGT-TGAGGAAAACTT---------------TTAAGTAGAACCAAGTTTCTTTCTCAAATGACTAGCAGCTTTC-CCACATAACGTACGTTTT---------TGGTCTGAA----ATGACCTCATCGTTGA-GAGGTAAG---------GAGAGAGCGTTCT------A--GA
gi|5 : ATGGTTATTTTCATTTTACGTTTTACCATAATTG----CGTTCTACA-CTATTTATACT-GCAGTTAAAC----TTTATTTCCAACACATTGCA--TGT--TATACA-G--TATGTAACAAACAG-TTTAGTTTGGTATGATAAGTTTCTCTG-A-TGCAT----CGGAACAGAACTGTCGTCCTac
gi|6 : attacacaaattactgctaaaacaagggTTTATTATACCA--ATTGTATTTATTTTAAAATTTTTTT--ATCGAAGTTTTAT----GTCATTTTTAACCCATTATACTGGTCATAT--A-AATTATGACATA--CAGGTTTA--TCTGC-AGAGGTAAACTTCA
gi|7 : aGGACAAACTGGGCTCAAACCTA----CTCAGTGGTAA-GAAGTAAGTCA-TAC-TGAGAT-ACCTCTTGATATGA--GGCCACTCATCCAGGCAGG-T-CC-------C-TTCAAAT
gi|8 : TTTCAGAACAAGCTTGATTCAAACCCACAACCT---CTGTGACAAGGTAAGTCA--------------GCC--------A--GACCACTCTTCCATAGAGGAaattcaagaattctttcaaaaccc
gi|9 : taacaaattgttTCCAACTCCACGACCTCAGCGATGG-GGGATGAGTAAGTATATGAG--TATACCTT------A--AA-CACTTGGCTACGAAGGATAATTTTG--TC-ctc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AACCCTTTACTCCATAGATACGCGTTTTCCTGCACCAATCACAGAAGGCCTTTGAAAACAGTGCAGGAAGAGTTCAGATTGCTTGTAACAATCAATCTGAACACTTCCTGCACTGTTTTCCACTCTGTCAGTTAATATAAACATAATTCACCCAATAATTCAAAAGTCTTCTATATTAGGTGTCCAAAGGCGTCTATATTAGAGGTGTCCAAAGGCATCTATATTAAAGGTGTCCAAAGGCATCTATATGAAGTAAAGGGTT
Unaligned ( gi|17 ): TGTAATACTTTTTAACCCTTTGCTTCATATGGACGCATTTGGA
Alignments
lowQualScore : 11 1 222222222222 111 1 1111 11 11 3333333 1111 4444444444444 1 222 11111 111 222
lowQualScore : 22 1 3 1 66 00 999999999999 777 5 1 6 1 1 7777 1 11 11 4444444 8 99 5 2222 99 1 1 9999999999999 6666 1 1 6 3 333 6 1 3 0 2 3 3 0 3 77777 888888 444 0 1 3 333 5 1 111
lowQualScore : .. . . . .. .. ............ ... . . . . . .... . .. .. ....... . .. . .... .. . . ............. .... . . . . ... . . . . . . . . . ..... ...... ... . . . ... . . ...
lowQualScore : 77 0 3 0 88 55 222222222222 555 6 0 0 0 4 0000 0 00 00 6666666 2 22 6 6666 00 4 0 5555555555555 8888 0 0 7 3 333 5 4 2 2 5 6 3 2 3 55555 222222 000 7 6 6 444 0 7 000
consensus : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
Reference ( family-699 ) : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
gi|1 : TGAAATGGTCATCTT-ATTATTTGT------A--A--ATAATC-TTCTGGG-TTTTTTTTATT-GCAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT----A--TATGGCATATCCAGTTTTA--CTGGT-TGAGGAAGACCTCAGAA-TGGAT---A-TGAATAGAACCGTAGTCCTTCCGCAAGTAACTTGCAAACTCTATCACATAAAG---TTTTTGGAGCGAGCGGGATATGAACCTACGACCTTATTGGTGA-GAGGTAAGTGA-TCT-TGAGATGCTATTTT------G--GATTACTCGGCCATGGAGGAC-CCTTTAACCC-TTTA
gi|10 : aagattttttttttagtgcaaacataacacttactggtacacaaatACCACCTCAGCAGTGG-CAGTTTACAGG-CAT-TGCGACAACACCTT------A--GACCAGTCAGCAACAGAGGAT--CTTTA--TA-TTTGActtcatatagacgcctttggacgcctctaatatagaaggcttttgaa
gi|11 : aCCTCATTGGTAA-GTGGTTACTGA-TCT-TGAGACGACG--TT------ATCGGCTACTCAGCCAATAAGAAC-CCCT
gi|12 : GTGA-GAGTCAAGTGA-CAT-TGAGA---CATCTT------G--TACAACTATGCCAGGGAGGGT-CTTTTC--TCATTTAaac
gi|13 : GGTGA-GGAAGAAGTGA-TAT-TAAGAT-AC-CCTT------A---ATTATTGGGCCATGGACGAT-CCTTTg
gi|14 : GACAGCACCTC------A--GACCACTCAGCCATGGAGGAA-CTTTT---TA-TTT-AATTTTT---TTTTAAA
gi|15 : GGTGA-GATGTAAGTGA-TGT-TG--------CCTC------A--TGGCACTCTGCCACAGAGGAT-CCTTT
gi|16 : gaAGACGGCACCTA------A--CACCACTCGTCCACGGAGGAC-CCTCGG--TT-TT
gi|18 : TGA-TAT-TGAGACAGAGCCTT------A--GACCACTCGGTC
gi|2 : TGAAATGGT-GTGTT-TGTCTTTGATTTATTA--ATT-TATTT-TTTTAATATTTTTTTGAAT-GGGGTTTTAC----GTCATTTTCAACACATTTTA--GGT--TAT--A----TATGGCATATCCAATTTTA--CTGGT-GGAAGAAGACCTCAG-GCTGAGTCAGACTGAGTAGAAC-ACCGTCATTCCGTAATTAACTGG-AAACTTT-TAACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTTAGTGGTGA-GAGATAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAACCTTTGAATTTTAAAcc
gi|4 : aTTTTAATTGGACCTTAAATATAATTATTTTCAACATATTTCC--AGT--TCT--ACA--TATG---CATTCAGTTTTA--TGAGT-TGAGGAAAACTT---------------TTAAGTAGAACCAAGTTTCTTTCTCAAATGACTAGCAGCTTTC-CCACATAACGTACGTTTT---------TGGTCTGAA----ATGACCTCATCGTTGA-GAGGTAAG---------GAGAGAGCGTTCT------A--GA
gi|5 : ATGGTTATTTTCATTTTACGTTTTACCATAATTG----CGTTCTACA-CTATTTATACT-GCAGTTAAAC----TTTATTTCCAACACATTGCA--TGT--TATACA-G--TATGTAACAAACAG-TTTAGTTTGGTATGATAAGTTTCTCTG-A-TGCAT----CGGAACAGAACTGTCGTCCTac
gi|6 : attacacaaattactgctaaaacaagggTTTATTATACCA--ATTGTATTTATTTTAAAATTTTTTT--ATCGAAGTTTTAT----GTCATTTTTAACCCATTATACTGGTCATAT--A-AATTATGACATA--CAGGTTTA--TCTGC-AGAGGTAAACTTCA
gi|7 : aGGACAAACTGGGCTCAAACCTA----CTCAGTGGTAA-GAAGTAAGTCA-TAC-TGAGAT-ACCTCTTGATATGA--GGCCACTCATCCAGGCAGG-T-CC-------C-TTCAAAT
gi|8 : TTTCAGAACAAGCTTGATTCAAACCCACAACCT---CTGTGACAAGGTAAGTCA--------------GCC--------A--GACCACTCTTCCATAGAGGAaattcaagaattctttcaaaaccc
gi|9 : taacaaattgttTCCAACTCCACGACCTCAGCGATGG-GGGATGAGTAAGTATATGAG--TATACCTT------A--AA-CACTTGGCTACGAAGGATAATTTTG--TC-ctc
blockSeqs : TA G C C TT ATTGTATTTA ATA G A T G T TATA T CT CA ACAG G TC T GTTT AT G A GCTGAGTCAGAC CAAG T G C . TAC G G A G C G A CAACA GATATG TCG C A A A G GAA
blockSeqs : G T . T TT ATTTATTT AAA T A C G A . T . . AAAT T TT T CT G A T ATGCATC TGTC A A . . . A A A T . . . CGACG . G A . C . A
blockSeqs : TA TAATTGCG CA T C . C A . G . . ACA A AA G TG T T A T ACC . A A G . . . CAGCA . T G . G . A
blockSeqs : . A . A T . A . . A . . . TC A A . . C T . . . CGGCA . G T . G . A
blockSeqs : . G . . . CAGAG . T T . G . .
blockSeqs : G . . . CGGCG . C C . . .
blockSeqs : . . . . GAGCG . G C . . .
blockSeqs : . . . TACC . G C .
blockSeqs : . . . TATA . G G .
blockSeqs : . . . TAC . G T .
blockSeqs : . . CA . G C
blockSeqs : G . A
blockSeqs : . . .
blockSeqCons : AA***** G**
originalCons : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
finalCons : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TATAA-----TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AACCCTTTACTCCATAGATACGCGTTTTCCTGCACCAATCACAGAAGGCCTTTGAAAACAGTGCAGGAAGAGTTCAGATTGCTTGTAACAATCAATCTGAACACTTCCTGCACTGTTTTCCACTCTGTCAGTTAATATAAACATAATTCACCCAATAATTCAAAAGTCTTCTATATTAGGTGTCCAAAGGCGTCTATATTAGAGGTGTCCAAAGGCATCTATATTAAAGGTGTCCAAAGGCATCTATATGAAGTAAAGGGTT
Unaligned ( gi|17 ): TGTAATACTTTTTAACCCTTTGCTTCATATGGACGCATTTGGA
Alignments
lowQualScore : 11 1 222222222222 111 1 1111 11 11 3333333 1111 4444444444444 1 222 11111 111 222
lowQualScore : 22 1 3 1 66 00 999999999999 777 5 1 6 1 1 7777 1 11 11 4444444 8 99 5 2222 99 1 1 9999999999999 6666 1 1 6 3 333 6 1 3 0 2 3 3 0 3 77777 888888 444 0 1 3 333 5 1 111
lowQualScore : .. . . . .. .. ............ ... . . . . . .... . .. .. ....... . .. . .... .. . . ............. .... . . . . ... . . . . . . . . . ..... ...... ... . . . ... . . ...
lowQualScore : 77 0 3 0 88 55 222222222222 555 6 0 0 0 4 0000 0 00 00 6666666 2 22 6 6666 00 4 0 5555555555555 8888 0 0 7 3 333 5 4 2 2 5 6 3 2 3 55555 222222 000 7 6 6 444 0 7 000
consensus : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
Reference ( family-699 ) : NTGAAATGGTCGTNTT-ATTNTTTGTTTTACCA--ATTGTATTCGTTCTAAAATTTTTTTTAAT-GNAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT--A-A--TATGGCATATCCAGTTTTA--TCGGT-TGAGGAAGACCTCAG-A-TGNAT---ACTGAGTAGAACCGTNGTCCTTCCGCAANTAACTNGCAAACTTT-TCACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTCAGCGGTGA-GAGGTAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAATCTTTGAATTTTAAA
gi|1 : TGAAATGGTCATCTT-ATTATTTGT------A--A--ATAATC-TTCTGGG-TTTTTTTTATT-GCAGTTTAAC----GTCATTTTCAACACATTTCA--GGT--TAT----A--TATGGCATATCCAGTTTTA--CTGGT-TGAGGAAGACCTCAGAA-TGGAT---A-TGAATAGAACCGTAGTCCTTCCGCAAGTAACTTGCAAACTCTATCACATAAAG---TTTTTGGAGCGAGCGGGATATGAACCTACGACCTTATTGGTGA-GAGGTAAGTGA-TCT-TGAGATGCTATTTT------G--GATTACTCGGCCATGGAGGAC-CCTTTAACCC-TTTA
gi|10 : aagattttttttttagtgcaaacataacacttactggtacacaaatACCACCTCAGCAGTGG-CAGTTTACAGG-CAT-TGCGACAACACCTT------A--GACCAGTCAGCAACAGAGGAT--CTTTA--TA-TTTGActtcatatagacgcctttggacgcctctaatatagaaggcttttgaa
gi|11 : aCCTCATTGGTAA-GTGGTTACTGA-TCT-TGAGACGACG--TT------ATCGGCTACTCAGCCAATAAGAAC-CCCT
gi|12 : GTGA-GAGTCAAGTGA-CAT-TGAGA---CATCTT------G--TACAACTATGCCAGGGAGGGT-CTTTTC--TCATTTAaac
gi|13 : GGTGA-GGAAGAAGTGA-TAT-TAAGAT-AC-CCTT------A---ATTATTGGGCCATGGACGAT-CCTTTg
gi|14 : GACAGCACCTC------A--GACCACTCAGCCATGGAGGAA-CTTTT---TA-TTT-AATTTTT---TTTTAAA
gi|15 : GGTGA-GATGTAAGTGA-TGT-TG--------CCTC------A--TGGCACTCTGCCACAGAGGAT-CCTTT
gi|16 : gaAGACGGCACCTA------A--CACCACTCGTCCACGGAGGAC-CCTCGG--TT-TT
gi|18 : TGA-TAT-TGAGACAGAGCCTT------A--GACCACTCGGTC
gi|2 : TGAAATGGT-GTGTT-TGTCTTTGATTTATTA--ATT-TATTT-TTTTAATATTTTTTTGAAT-GGGGTTTTAC----GTCATTTTCAACACATTTTA--GGT--TAT--A----TATGGCATATCCAATTTTA--CTGGT-GGAAGAAGACCTCAG-GCTGAGTCAGACTGAGTAGAAC-ACCGTCATTCCGTAATTAACTGG-AAACTTT-TAACATAAAG---GTTTTGGAACGAGCTGGATTCAAACCTACGACCTTAGTGGTGA-GAGATAAGTGA-TAT-TGAGACGGCGCCTT------A--GACCACTCGGCCACGGAGGAT-CCTTTG--TC-TTTAAACCTTTGAATTTTAAAcc
gi|4 : aTTTTAATTGGACCTTAAATATAATTATTTTCAACATATTTCC--AGT--TCT--ACA--TATG---CATTCAGTTTTA--TGAGT-TGAGGAAAACTT---------------TTAAGTAGAACCAAGTTTCTTTCTCAAATGACTAGCAGCTTTC-CCACATAACGTACGTTTT---------TGGTCTGAA----ATGACCTCATCGTTGA-GAGGTAAG---------GAGAGAGCGTTCT------A--GA
gi|5 : ATGGTTATTTTCATTTTACGTTTTACCATAATTG----CGTTCTACA-CTATTTATACT-GCAGTTAAAC----TTTATTTCCAACACATTGCA--TGT--TATACA-G--TATGTAACAAACAG-TTTAGTTTGGTATGATAAGTTTCTCTG-A-TGCAT----CGGAACAGAACTGTCGTCCTac
gi|6 : attacacaaattactgctaaaacaagggTTTATTATACCA--ATTGTATTTATTTTAAAATTTTTTT--ATCGAAGTTTTAT----GTCATTTTTAACCCATTATACTGGTCATAT--A-AATTATGACATA--CAGGTTTA--TCTGC-AGAGGTAAACTTCA
gi|7 : aGGACAAACTGGGCTCAAACCTA----CTCAGTGGTAA-GAAGTAAGTCA-TAC-TGAGAT-ACCTCTTGATATGA--GGCCACTCATCCAGGCAGG-T-CC-------C-TTCAAAT
gi|8 : TTTCAGAACAAGCTTGATTCAAACCCACAACCT---CTGTGACAAGGTAAGTCA--------------GCC--------A--GACCACTCTTCCATAGAGGAaattcaagaattctttcaaaaccc
gi|9 : taacaaattgttTCCAACTCCACGACCTCAGCGATGG-GGGATGAGTAAGTATATGAG--TATACCTT------A--AA-CACTTGGCTACGAAGGATAATTTTG--TC-ctc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AACCCTTTACTCCATAGATACGCGTTTTCCTGCACCAATCACAGAAGGCCTTTGAAAACAGTGCAGGAAGAGTTCAGATTGCTTGTAACAATCAATCTGAACACTTCCTGCACTGTTTTCCACTCTGTCAGTTAATATAAACATAATTCACCCAATAATTCAAAAGTCTTCTATATTAGGTGTCCAAAGGCGTCTATATTAGAGGTGTCCAAAGGCATCTATATTAAAGGTGTCCAAAGGCATCTATATGAAGTAAAGGGTT
Unaligned ( gi|17 ): TGTAATACTTTTTAACCCTTTGCTTCATATGGACGCATTTGGA