lowQualScore : 111111111111111111111 1111111111111111 44444444444444444444444444444444444444444444444444444444444444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 3333333 66666666666666666666666666666666666666666666666666666666666666666666 111111111111111111111 1 1 333 11 555555555555 111 11 3333333333333333333333333333333 11 1111 111 1 1 33333 11 333 333 222 2 3333 22 333333 1 111 22 1 1 1 33 111 1111111111111111 1111 1 44 1 1 77777777777777 44444444444444444444444444444444444444444444444444444444444444 22 333333 9999999999999999 2 2222 4 1 111 5555555555555555555555555555555 1 1 55555 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 44444444444 33 44 4 222 5555555555555 11 2 666666666666666666666
lowQualScore : 2222222 2 88 11111111111111111111111111111111111111111111111111111111111111111111 77 3 3 9 3 777777777777777777777 3 77 3 5 7 666666 555 3 9 22 77 444444444444 000 3 77 3 1111111111111111111111111111111 88 3 1111 3 3 3 3 3 3 3 3 8 8 3 3 4 3 555 2 1 3 3 8 2 5 3 88888 11 3 3 8 88 555 2 4 3 555 3 66 111 66 0 0000 77 666666 7 3 111 2 33 4 2 7 5 6 7 8 8 5 9 00 666 0000000000000000 5555 3 66 5 6 5 00000000000000 6 77777777777777777777777777777777777777777777777777777777777777 55 33 222222 88 9999999999999999 6 8 4 7 6 8 66 3 6 7777 0 6 4 1 888 6 8888888888888888888888888888888 5 2 6 6 88 00000 2 5 6 6 6 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 5 4 6 4 5 77777777777 7 00 6 1 66 0 000 8 4 5555555555555 2 22 4 0 4 4 888888888888888888888
lowQualScore : ....... . .. .................................................................... .. . . . . ..................... . .. . . . ...... ... . . .. .. ............ ... . .. . ............................... .. . .... . . . . . . . . . . . . . . ... . . . . . . . . ..... .. . . . .. ... . . . ... . .. ... .. . .... .. ...... . . ... . .. . . . . . . . . . . .. ... ................ .... . .. . . . .............. . .............................................................. .. .. ...... .. ................ . . . . . . .. . . .... . . . . ... . ............................... . . . . .. ..... . . . . . .............................................................................................................................................. . . . . . . ........... . .. . . .. . ... . . ............. . .. . . . . .....................
lowQualScore : 0000000 5 00 00000000000000000000000000000000000000000000000000000000000000000000 00 5 5 0 5 555555555555555555555 5 00 5 5 0 000000 000 5 0 55 00 555555555555 555 5 00 5 0000000000000000000000000000000 55 0 5555 5 5 5 5 5 5 5 5 0 0 5 5 0 0 333 0 0 0 0 0 0 7 5 55555 55 5 5 0 00 000 5 0 0 000 0 55 555 55 0 5555 55 000000 0 0 000 5 00 0 5 0 0 0 0 8 8 0 0 00 333 3333333333333333 8888 3 00 0 0 0 00000000000000 0 00000000000000000000000000000000000000000000000000000000000000 55 00 333333 33 7777777777777777 7 3 7 3 7 5 00 0 0 0000 0 0 0 5 000 0 5555555555555555555555555555555 0 5 0 0 55 00000 5 0 0 0 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 0 0 0 55555555555 3 00 0 0 00 0 333 3 0 0000000000000 5 00 0 0 0 0 000000000000000000000
consensus : GGATTATGTGCACTCATTTGTCTGTGAATCTTNACCNNACTTACACAACAGTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNAATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAA-AAGTGTGCGTATTTGATGTTGTGTGCACTCTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGTCATGTAGTTAATGANTATATNNCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGANATAGAACAGTATTGCATTGAACAATGAGTTCTTGGGCANGTTCTTGAACTGGNCGAGCAGGATAANTACTGTCNGAGTTANGNCNCTTGAATTGTCAAAAAGTGTGCGTATTTGATGTTGTGTGCACTCTNNCACTCGCAGNTNANATTTGGTCTTCGTTAANNTCGCGCTGGANNCCTTGTAATCATTAAATATCTTGAACAGGTCTTTGNCANNNTCTCCTNTGCCACAGGCGAGCGATTTANGGCCANTCTGGCCGTCTTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACANNNNNNNNNNNNNNTTTTGTTGTGTGCACTCTAGCACTCGCAGTTTTCATTTGATCTTCATCAAACTTAC--------TTTGTAATCAATAA-TATC-TGAA-CAAGTTCTTGAACTGGCCAA-TCAAATAAATATTGTCAGAGTTATGGC-ACT-------TGAATTGTCAAAAGT----------------GTGCGTATTTGAT--G---TTGTGTNNACTCTAGCACTNGCGGTTTTCATTTGATCTTC----ACC----TTACGCAGTTGTTNTGTAATCATAATATCTTGAANNAGNTCTTTGGNACTGGCCAA-TCAAATAANTANTGTCAGAGTTACGGCNCTTGAATTGTNAAAAGAGTGTGCGTATACATTGATNTTGTGTGCGCTCTAGCACTCNCAGTTTACATTTNATCTTCATTAAACTTACACGGATGTTTTGTAACCATAATAT-T-TGAA-CGAGTTCTTGAACTGGCCAA---AGTCGGATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAAGTGTGCG-TATTTGA----TGTTGTGTGCACTCTAACACTCGCAGTTTNCATTTGATCTTCACCANACTTACAC-----------AACCATAATAT-TTGAACGAGTTCTT-GAACTGGCC-AGTTAGAATAAATANTGCCAGAGTTANGGCGCTTNACCCTACTNTGTGTTGGTGATCTTCCAAATGGCGNTTCAAACTGCGGCTNTTGGCACATATGCAGATGATCCTACACTACATGCTGCCCT
Reference ( gi|1 ) : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTGCGACTACCGAGT----TATGGACAGCAGATCGGATATCCAAATAATAAAAAAGCTGCCAATTCACGCCTTATTTAATCAGACTAAATAGTCATCTCACCATAGATTTCTGGCCTTGTACCGATTGTTTTGCATAATAAAT---GTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACA-ATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACGAGGGTTCAGTGCAACACTGTTCTGTCTGTATATAAACAAATAAAGAAATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCAGGATAACTAATGTCTGAGTTAAGACCCTTGAATTGTCAGAAAATA-ATTTATTTGACCTCGTGTACAGTCTTTCA---ACAGGTAAAATTTGG---TAGTTAATGTCGCTCTGGAACCCTTG-AATCGTTGAATA--TTG--CA--TCATTGTCAAATTCTCTTGTGCCACAGACAAGTGATTT-TGATCATTTTGGCTGTCTTGTTTATGTATCAATACAGTAAATAAGGGCAATATTTCTTTGTTAACAGGAAATAAAGCAATTGGCGCATTTGTTCCTAAACACATTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTACACTGTAGCACTCACATTTTTCATTGCATCTTTGCCAAACTTAC--------TATATAA-CAATAA-TATC-TGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGTATTTTTCATTTAA---------ACC----TTACACAGTAGTTATATAATCATAATATCTTGTAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAATGTTGAAGTTATGACCCAT-AATCATAAAAAGAATGTGT-TAT---TTGATGTTGTGTGCTCTCTAGTACTTGCAGT-----TTTCATCGTCACTGAATTT-CCTTAATAT----TAACCATAATATCTGTG-A-CAAGTTC---AACTGGCCAAATAAATCGAATAAATGATGTTGGGATAATAGTCCTTAAAAGATTAAAAAT-TGCACTATTTAAAGTATCTTATATGC-----------CACATTTTTCATTTGATCCTCACTAAAGTTACAC-----------AACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTAATTAATGTC--AGTTAAGGCCCTTGATTCTACTTTATGTTGATGATTTTCCAA-TGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|2 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCTAACTTACACAACAGTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGTCATGTAGTTAATAAATATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNTTCA---ACAGGTAAAATTTGG---TAGTTAATGTCGCGCTGGAACCCTTG-AATCATTAAATA--TTG--CA--TCTTTGTCAAATTCTCTTGTGCCACAGACAAGTGATTT-TGATCATTTTGGCTGTTTTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACA
gi|8 : tTCATTTG-------ATCTTCACCATACTTACACAATAGTTATC
gi|7 : atttaattagcgttgtgttaactctagcaaaggcagtttTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGG-CATgta
gi|3 : AATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAA-AAGTGTGCGTATTTGATGTTGTGTGCACTCTAACA
gi|11 : aaccatatatgaacaagttcttgaactggccaatcaAGTT--TGACTATATTTCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGATATAGctcgcagtttacatttgatcttcattaaacttacacggatgttttgtaatcaaaatatcttgaacaggtctttggcattgtctcctctgccacaggtgagcaatttagggccaatctggccctcttgtt
gi|11 : AGATAAAACAGTATTGCATTGAAC
gi|3 : agtttgactatatttctaagTGAACAAGTTCTTGAACTGGCCAATCAA-ATAAATATTGTCAGAGTTATGGCACTTGAATTGTCA-AAAGTGTGCGTATTTGATGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACAC-GGATGTTTTGTAATCA--AAATATCTTGAACAGGTCTTTGGCATTGTCTCCTCTGCCACAGGTGAGCAATTTAGGGCCAATCTGGCCCTCTTGTTgcacatagacacataaagatatag
gi|16 : aaccatataGAGAAGGA-AACTACTGTCTGAGTTAAGTCCCTTGAATTGTCAAAAA
gi|21 : cTTTTGTTGTGTGCATTGTAACACTCACATTTTTCGTT
gi|3 : ttTGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACACGGATGTTTTGTAATCAA-AA-TATCTTGAA
gi|8 : aaccatatatgaacaagttcttgaactggccaatcaaataaatattgtcagagttatggcacttgaattgtcaaaagtgtgcgtatttgaGTTGTGTTAACTCTAGCAAAGGCAGTTTTCATTTGATCTTCACCATACTTAC--------------A-CAATAGTTATC-caggtctttggcattgtctcctctgccacaggtgagcaatttagggccaatctggccctcttgtt
gi|4 : atttaattagcTTGTGTGCGCTCTAGCACTCTCAGTTTTCATTTGATCTTAATCAAACTTAC--------gta
gi|3 : taaaattagtgtcagagttacagcttttaaataaaaaagtgtatatatacattattA-TATA-TGAA-CAAGTTCTTGAACTGGCCAA-TCAAATAAATATTGTCAGAGTTATGGC-ACT-------TGAATTGTCAAAAGT----------------GTGCGTATTTGAT--G---TTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAAC----TTACACGGATGTTTTGTAATCAAAATATCTTG-AACAGGTCTTTGGCATTGctctgccacagatgagccctagggccaatctggccctcttgttgta
gi|8 : aaccTGTGTTAACTCTAGCAAAGGCAGTTTTCATTTGATCTTC----ACCATACTTACACAATAGTTATtctcctctgccacaggtgagcaatttagggccaatctggccctcttgtt
gi|12 : atttaattagcgtGCACTT-TGATCTTCATC-AA---------ACT----TTCCG-AGTTGTTGTATAATCATGATATCTTGcgta
gi|3 : tgcgttctAACCATA-TAT---GAACAAGTTCTT--GAACTGGCCAA-TCAAATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAAG--TGTGCGTAT---TTGATGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACACGGATGTTTTGTAATCAAAATATCT-TGAA-CAGGTaaca
gi|4 : AATTAGTGTCAGAGTTACAGCTTTT-AA--ATAAAAA-AGTGTATATATACATT-ATTTTGTGTGCGCTCTAGCACTCTCAGT-----TTTCATctttggcattgtctcctctgccacaggtgagcaatttagggccaatctggccctcttgtt
gi|15 : taa----TAACCATAATATAT-TGAA-CGAGTTCTTGAACTGGCC-----AGTTGGATAAATttgatcttaatcaaacttacctctgccacagatgagccctagggccaatctggccctcttgttgta
gi|3 : AACCATA-----TATG-AACAAGTTCTTGAACTGGCCAA-----TCAAATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAAGTGTGCG-TATTTGA----TGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACACGGATGTTTTGTAATCAAAATATCTTGAACAGGTCTTTatt
gi|8 : CAGTTTTCATTTGATCTTCACCATACTTACAC-----------AAggcattgtctcctctgccacaggtgagcaatttagggccaatctggccctcttgtt
gi|3 : atttaattagcgttgtgttaactctagcaaagg-----------AACCATA-TA---TGAACAAGTTCTT-GAACTGGCC-AATCA-AATAAATATTGTCAGAGTTATGGCACTTGAtagttatcgta
gi|15 : -----------AACCATAATATATTGAACGAGTTCTT-GAACTGGCC-AGTTGGA-TAAATAattgtcaaaagtgtgcgtatttgatgttgtgtgcactctaacactcgcagtttacatttgatcttcattaaacttacacggatgttttgtaatcaaaatatcttgaacaggtctttggcattgtctcctctgccacaggtgagcaatttagggccaatctggccctcttgtt
gi|5 : tTAAAATCATTGATGCC-----TAAAGAG-TTCACCCTACTATGTGTTAGTGATCTTCTAAATGGCGATTCAAACTGCGGCTATTGACACATATGCAGATGATTCTACACTACATACTGCtt
gi|10 : TACTTTATGTTGATGATTTTCCAA-TGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATGCTGCCCTtggaataagtgacctattagtgttattaaga
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AATTTAAATGTCTTGCATTATAAACAATGTCTTCTTTTGTCGCATTCTCTCCTCTGCAACAGATATAGGGCCAATGTTACCTTCTTGTCC
Unaligned ( gi|9 ): TTAATAATATCTGAATTAACTAATTGTTCCTCTATCACACGTAGATGGTTTACGGCTGATGTGGCCCTCTTGTTTA
Unaligned ( gi|13 ): TTTGTCATATTCTCTTATGGCAGAGGTGAACAACTTAGCTCCAATGTGACTCTCTTGTTT
Unaligned ( gi|14 ): ATTGCCATCTCTGCCAATTATGAACACTTAAGGGCCAATCTGGCCCTCTTTGTT
Unaligned ( gi|17 ): TCTTCTACAACAGGTGAGCAAATTAGGCAATCATGGCTCTCTTGTT
Unaligned ( gi|18 ): CTCTTCTACAACAGGTGAGCAAATTAGGCAATCATGGCTCTCTTGT
Unaligned ( gi|19 ): TGCTACAAATGAGCCATTTAGAGCCATTCTTGCCCTCTTGTTT
Unaligned ( gi|20 ): GCAACAAGTGAGCTCTTTAGGGCCAATCTGGCACTCTTGT
Alignments
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444 11111111111111 1111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444444444444444444444 22222 8888888888 22 333 11 77777777777777777777777777777777777777777777777777777777777777777777 1 3333 4444 2 11 55555555555555 1111 11111111111111 1 1 33 111 1 4 4 1 1 4 1 555555 333333333333333333333333333333333333333333333333333333333333333 22 1 2 5555555555555 1 4 2 4444 22 222 1 44444 11111111111111 2 2 222 55555 2222222 22 333 3333333333333333333333333333333333333333333 44 44 4 1 66666 222 666666666666666666666
lowQualScore : 7 1 0 22 9999999999999999999999999999999999999999999999999 3 77777 4 4 4 7777777777 77 7 4 666666 666 3 9 22 77 88888888888888888888888888888888888888888888888888888888888888888888 7 0 1 22 2 2 1 3 3 1 0 1 5 5 1 3 1 1 1 1 5 0 2 2 2 22 2222 1 1 1 4444 22 3 7 22 3 3 88 66666666666666 4444 1 99 333 1 0 3 3 22 1 1 66 9 4 3 4 44444444444444 5 6 5 00 888 7 6 0 0 6 5 6 5 0 5 6 444444 6 777777777777777777777777777777777777777777777777777777777777777 22 33 77 5 3 0 5555555555555 3 5 4 1 6 4 22 1 6 77 0 6 1 1 1 4 3 4444 99 111 5 1 2 1 00000 1 3 2 11111111111111 0 0 111 33333 4 2222222 6 11 6 888 6 6 1111111111111111111111111111111111111111111 2 1 1 2 66 6 6 6 66 0 6 3 7 1 33333 1 000 1 1 0 0 0 7 7 11 0 1 999999999999999999999 0
lowQualScore : . . . .. ................................................. . ..... . . . .......... .. . . ...... ... . . .. .. .................................................................... . . . .. . . . . . . . . . . . . . . . . . . . . . .. .... . . . .... .. . . .. . . .. .............. .... . .. ... . . . . .. . . .. . . . . .............. . . . .. ... . . . . . . . . . . . ...... . ............................................................... .. .. .. . . . ............. . . . . . . .. . . .. . . . . . . . .... .. ... . . . . ..... . . . .............. . . ... ..... . ....... . .. . ... . . ........................................... . . . . .. . . . .. . . . . . ..... . ... . . . . . . . .. . . ..................... .
lowQualScore : 3 0 7 00 0000000000000000000000000000000000000000000000000 0 55555 0 0 0 5555555555 55 3 0 000000 555 5 0 55 00 55555555555555555555555555555555555555555555555555555555555555555555 3 7 0 00 3 0 0 5 5 0 7 0 2 8 0 0 0 0 0 0 8 7 0 0 0 00 3333 0 0 0 0000 00 7 3 00 7 2 00 44444444444444 2222 0 22 000 0 1 4 7 99 9 0 33 4 0 0 0 00000000000000 0 0 0 00 000 0 0 0 0 0 0 0 0 0 0 0 000000 0 000000000000000000000000000000000000000000000000000000000000000 00 00 00 0 0 0 5555555555555 0 0 0 0 0 0 00 0 0 00 0 0 0 0 0 0 0 5555 00 000 0 0 5 0 00000 0 0 5 55555555555555 0 0 000 55555 0 0000000 0 00 0 000 0 0 5555555555555555555555555555555555555555555 5 0 0 5 00 0 0 0 00 0 0 0 0 0 55555 0 000 0 0 7 7 7 3 3 77 7 0 777777777777777777777 7
consensus : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAAT---GTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACA-ATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTC--ANATTCTCCTCTGCCACAGGCGAGCGATTTAGGGCCAATC-TGGCCCTCTTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAA-CAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCACCAAACTTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTNATCNTNACCGAACTTACCTTAATAT----TAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAAT-TGCACTATTTAAAGTATTAGCNTTGTGTNNACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCC--AGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
Reference ( family-69 ) : GGATTATGTGCACTCATTTGTCTGTGAATCTTNACCNNACTTACACAACAGTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNAATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAA-AGTGTGCGTATTTGATGTTGTGTGCACTCTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGTCATGTAGTTAATGANTATATNNCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGANATAGAACAGTATTGCATTGAACAATGAGTTCTTGGGCANGTTCTTGAACTGGNCGAGCAGGATAANTACTGTCNGAGTTANGNCNCTTGAATTGTCAAAAAGTGTGCGTATTTGATGTTGTGTGCACTCTNNCACTCGCAGNTNANATTTGGTCTTCGTTAANNTCGCGCTGGANNCCTTGTAATCATTAAATATCTTG-------AACAG-GTCTT----TGNC--ANNNTCTCCTNTGCCACAGGCGAGCGATTTANGGCCANTC-TGGCCGTCTTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACANNNNNNNNNNNNNNTTTTGTTGTGTGCACTCTAGCACTCGCAGTTTTCATTTGATCTTCATCAAACTTACTTTGTAATCAATAATATCTG-AACAAGTTCTTGAACTGGCC-AATCAAATAAATATTGTCAGAGTTATGG-CACT-------TGAATTGTCAAAAGT----------------GTGCGTATTTGAT--G---TTGTGTNNACTCTAGCACTNGCGGTTTTCA-TTTGATCTTCACC-----TTACGCAGTTGTTNTGTAATCATAATATCTTGAANNAGNTCTTTGGNACTGGCC-AATCAAATAANTANTGTCAGAGTTACGGCNCTTGAATTGTNAAAAGAGTGTGCGTATACATTGATNTTGTGTGCGCTCTAGCACTCNCAGTTTACATTTNATCTTCATTAAACTTACACGGATGTTTTGTAACCATAATAT-TTG-AACGAGTTCTTGAACTGGCCA---AAGTCGGATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAAGTGTGCG-TATTTG----AT----GTTGTGTGCACTCTAACACTCGCAGTTTNCATTTGATCTTCACCANACTTACACAACCATAATA-TTTGAACGAGTTCTT-GAACTGGCC-AGTTAGAATAAATANTGCCAGAGTTANGGCGCTTNACCCTACTNTGTGTTGGTGATCTTCCAAATGGCGNTTCAAACTGCGGCTNTTGGCACATATGCAGATGATCCTACACTACATGCTGCCCT
gi|1 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTGCGACTACCGAGT----TATGGACAGCAGATCGGATATCCAAATAATAAAAAAGCTGCCAATTCACGCCTTATTTAATCAGACTAAATAGTCATCTCACCATAGATTTCTGGCCTTGTACCGATTGTTTTGCATAATAAAT---GTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACA-ATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACGAGGGTTCAGTGCAACACTGTTCTGTCTGTATATAAACAAATAAAGAAATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCAGGATAACTAATGTCTGAGTTAAGACCCTTGAATTGTCAGAAAATA-ATTTATTTGACCTCGTGTACAGTCTTTCA---ACAGGTAAAATTTGGTA---GTTAATGTCGCTCTGGAACCCTTG-AATCGTTGAATAT--TG---------CA---TCAT----TGTC--AAATTCTCTTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTCTTGTTTATGTATCAATACAGTAAATAAGGGCAATATTTCTTTGTTAACAGGAAATAAAGCAATTGGCGCATTTGTTCCTAAACACATTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTACACTGTAGCACTCACATTTTTCATTGCATCTTTGCCAAACTTACTATATAA-CAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGTATTTTTCA-TTTAA-----ACC-----TTACACAGTAGTTATATAATCATAATATCTTGTAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAATGTTGAAGTTATGACCCAT-AATCATAAAAAGAATGTGT-TAT---TTGATGTTGTGTGCTCTCTAGTACTTGCAGT-----TTTCATCGTCACTGAATTT-CCTTAATAT----TAACCATAATAT-CTGTGACAAGTTC---AACTGGCCAAATAAATCGAATAAATGATGTTGGGATAATAGTCCTTAAAAGATTAAAAAT-TGCACTATTTAAAGTAT----CTTATATGC-----------CACATTTTTCATTTGATCCTCACTAAAGTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTAATTAATGTC--AGTTAAGGCCCTTGATTCTACTTTATGTTGATGATTTTCC-AATGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|10 : TACTTTATGTTGATGATTTTCCAA-TGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATGCTGCCCT
gi|11 : AGTT--TGACTATATTTCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGATATAGtgg
gi|12 : GCGTTCTGCACTTTGATCTTCATCAAACTTTCCG-AGTTGTTGTATAATCATGATATCTTGAA
gi|13 : tTT----TGTC--ATATTCTCTTATGGCAGAGGTGAACAACTTAGCTCCAATG-TGACTCTCTTGTTTca
gi|15 : TAACCATAATATATTG-AACGAGTTCTTGAACTGGCC-----AGTTGGATAAATATT
gi|16 : CGAGAAGGA-AACTACTGTCTGAGTTAAGTCCCTTGAATTGTCAAAAA
gi|17 : TCTTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTCTTGTT
gi|19 : TGCTACAAATGAGCCATTTAGAGCCATTC-TTGCCCTCTTGTTT
gi|2 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCTAACTTACACAACAGTCATC
gi|2 : tGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GCAATGTCATGTAGTTAATAAATATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAC----AGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCATTAAATAT--TG---------CA---TCTT----TGTC--AAATTCTCTTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTTTTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcatctcaccatagattactggccttgtaccgattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatgtcatgtagttaataaatatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgagttcttgggcatgttcttgaattggatgagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaacaggtaaaatttggtagttaatgtcgcgctggaacccttgaatcattaaatattgcatctttgtcaaattctcttgtgccacagacaagtgattttgatcattttggctgttttgtttatgtatcaattcagtaaataagggcaatatttctttgttaaaaggaaataaagcaatcggcgcatttgttcctaaacactttctagaatttttagctcatctgagcaaaactcaagatgagggtttctgatagccttattaca
gi|21 : tggattatgtgcactcatttgtctgtgaatcttgatctaacttacacaacagtcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTGTTGTGTGCATTGTAACACTCACATTTTTCGTT
gi|3 : ttTGAACAAGTTCTTGAACTGGCCAATCAA-ATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAA-GTGTGCGTATTTGATGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACAC-GGATGTTTTGTAATCA--AAATATCTTG-------AACAG-GTCTT----TGGC--ATTGTCTCCTCTGCCACAGGTGAGCAATTTAGGGCCAATC-TGGCCCTCTTGTT
gi|4 : aaccatataAATTAGTGTCAGAGTTACAGCTTTTAAAT----AAAAAAGTGTATATATACATT-ATTTTGTGTGCGCTCTAGCACTCTCAGTTTTCATTTGATCTTAATCAAACTTAC
gi|4 : taaG-ATCTT----AATC--AAACTTACCTCTGCCACAGATGAGC--CCTAGGGCCAATC-TGGCCCTCTTGTTctctgccacagatgagccctagggccaatctggccctcttgttgta
gi|5 : taaaattagtgtcagagttacagcttttaaataaaaaagtgtatatatacattattttgtgtgcgctctagcactctcagttttcatttTAAAATCATTGATGCC-----TAAAGAG-TTCACCCTACTATGTGTTAGTGATCTTCTAAATGGCGATTCAAACTGCGGCTATTGACACATATGCAGATGATTCTACACTACATACTGCgta
gi|6 : TTAAATGTCTTGCATTATAAACAATGTCTTCTTTTGTCGCATTCTCTCCTCTGCAACA-------GATATAGGGCCAATG-TTACCTTCTTGTtggaataagtgacctattagtgttattaaga
gi|7 : aatTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGG-CATcc
gi|8 : ATTTA----ATTAGCGTTGTGTTAACTCTAGCAAAGGCAGTTTTCATTTGATCTTCACCATACTTACACAA
gi|8 : TCATTTG-------ATCTTCACCATACTTACACAATAGTTATCtagttatcgta
gi|9 : atttaattagcgttgtgttaactctagcaaaggcagtttTCCTCTATCACACGTAGATGGTTTACGGCTGATG-TGGCCCTCTTGTTTAgta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGCCATCTCTGCCAATTATGAACACTTAAGGGCCAATCTGGCCCTCTTTGTT
Unaligned ( gi|18 ): CTCTTCTACAACAGGTGAGCAAATTAGGCAATCATGGCTCTCTTGT
Unaligned ( gi|20 ): GCAACAAGTGAGCTCTTTAGGGCCAATCTGGCACTCTTGT
Alignments
lowQualScore : 22222 4444444444 11 1 3333 222 1 11 55555555555555 1111 55555555555 1 1 2222 1 222 1 33333 1 1 1 222 22222 3333333333 44444444444444 222 111 22222222222 33333
lowQualScore : 4 1 44444 1 1 1 0000000000 77 7 1 7 1 1 1 5 5 1 1 5 0 2 2 1 1 7777 333 3 7 3 33 88 66666666666666 4444 1 55 44 7 3 6 3 1 1 1 1 11111111111 1 5 1 1 1 5 4444 5 111 5 1 1 2 22222 1 1 5 5 5 111 77777 1 9999999999 99999999999999 1 1 1 1 111 777 1 7 7 0 0 88888888888 33333
lowQualScore : . . ..... . . . .......... .. . . . . . . . . . . . . . . . . .... ... . . . .. .. .............. .... . .. .. . . . . . . . . ........... . . . . . . .... . ... . . . . ..... . . . . . ... ..... . .......... .............. . . . . ... ... . . . . . ........... .....
lowQualScore : 0 0 55555 0 0 0 0000000000 55 3 0 3 0 0 0 2 8 0 0 8 7 0 0 0 0 0000 333 7 3 3 99 00 44444444444444 2222 0 55 99 1 1 7 3 0 0 0 0 00000000000 0 0 0 0 0 5 0000 5 000 0 0 0 5 55555 0 0 5 5 5 000 55555 0 5555555555 55555555555555 0 0 0 0 000 000 0 3 3 7 7 77777777777 33333
consensus : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
Reference ( family-69 ) : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGCGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCACCAAACTTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTNATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTNNACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|1 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTGCGACTACCGAGT----TATGGACAGCAGATCGGATATCCAAATAATAAAAAAGCTGCCAATTCACGCCTTATTTAATCAGACTAAATAGTCATCTCACCATAGATTTCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACGAGGGTTCAGTGCAACACTGTTCTGTCTGTATATAAACAAATAAAGAAATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCAGGATAACTAATGTCTGAGTTAAGACCCTTGAATTGTCAGAAAATA-ATTTATTTGACCTCGTGTACAGTCTTTCA---ACAGGTAAAATTTGGTA---GTTAATGTCGCTCTGGAACCCTTG-AATCGTTGAATAT--TG---------CA---TCAT----TGTCAAATTCTC--TTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTC-TTGTTTATGTATCAATACAGTAAATAAGGGCAATATTTCTTTGTTAACAGGAAATAAAGCAATTGGCGCATTTGTTCCTAAACACATTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTACACTGTAGCACTCACATTTTTCATTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGTATTTTTCATTT-----------AAACCTTACACAGTAGTTATATAATCATAATATCTTGTAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAATGTTGAAGTTATGACCCAT-AATCATAAAAAGAATGTGT-TAT---TTGATGTTGTGTGCTCTCTAGTACTTGCAGTTTTC-----ATCGTCACTGAATTT-CCTTAATATTAACCATAATAT-CTGTGACAAGTTC---AACTGGCCAAATAAATCGAATAAATGATGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTAT----CTTATAT--------GC---CACATTTTTCATTTGATCCTCACTAAAGTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTAATTAATGTCAGTTAAGGCCCTTGATTCTACTTTATGTTGATGATTTTCC-AATGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|10 : TACTTTATGTTGATGATTTTCCAA-TGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATGCTGCCCT
gi|11 : AGTT--TGACTATATTTCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGATATAGtgg
gi|12 : TGCGTTCTGCACTTTGATCTTCATCAAACTTTCCG-AGTTGTTGTATAATCATGATATCTTGAA
gi|13 : TT----TGTCATATTCTC--TTATGGCAGAGGTGAACAACTTAGCTCCAATG-TGACTCTC-TTGTTTca
gi|14 : --CTCTGCCAATTATGAACACTTAAGGGCCAATC-TGGCCCTCTTTGTT
gi|15 : attgccatTAACCATAATATATTG-AACGAGTTCTTGAACTGGCC-----AGTTGGATAAATATT
gi|16 : CGAGAAGGA-AACTACTGTCTGAGTTAAGTCCCTTGAATTGTCAAAAA
gi|17 : TC--TTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTC-TTGTT
gi|18 : CTC--TTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTC-TTGT
gi|19 : TGCTACAAATGAGCCATTTAGAGCCATTC-TTGCCCTC-TTGTTT
gi|2 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCTAACTTACACAACAGTCATC
gi|2 : tGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGTCATGTAGTTAATAAATATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAC----AGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCATTAAATAT--TG---------CA---TCTT----TGTCAAATTCTC--TTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTT-TTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcatctcaccatagattactggccttgtaccgattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatgtcatgtagttaataaatatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgagttcttgggcatgttcttgaattggatgagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaacaggtaaaatttggtagttaatgtcgcgctggaacccttgaatcattaaatattgcatctttgtcaaattctcttgtgccacagacaagtgattttgatcattttggctgttttgtttatgtatcaattcagtaaataagggcaatatttctttgttaaaaggaaataaagcaatcggcgcatttgttcctaaacactttctagaatttttagctcatctgagcaaaactcaagatgagggtttctgatagccttattaca
gi|20 : tggattatgtgcactcatttgtctgtgaatcttgatctaacttacacaacagtcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCAACAAGTGAGCTCTTTAGGGCCAATC-TGGCACTC-TTGT
gi|21 : TTTTGTTGTGTGCATTGTAACACTCACATTTTTCGTT
gi|3 : ttTGAACAAGTTCTTGAACTGGCCAATCAA-ATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAA-GTGTGCGTATTTGATGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACAC-GGATGTTTTGTAATCA--AAATATCTTG-------AACAG-GTCTT----TGGCATTGTCTC--CTCTGCCACAGGTGAGCAATTTAGGGCCAATC-TGGCCCTC-TTGTT
gi|4 : aaccatataAATTAGTGTCAGAGTTACAGCTTTTAAAT----AAAAAAGTGTATATATACATT-ATTTTGTGTGCGCTCTAGCACTCTCAGTTTTCATTTGATCTTAATCAAACTTACCT
gi|4 : taaG-ATCTT----AATCAAACTTAC--CTCTGCCACAGATGAGC--CCTAGGGCCAATC-TGGCCCTC-TTGTTctgccacagatgagccctagggccaatctggccctcttgttgta
gi|5 : taaaattagtgtcagagttacagcttttaaataaaaaagtgtatatatacattattttgtgtgcgctctagcactctcagttttcatttTAAAATCATTGATGCC---TAAAGAG-TTCACCCTACTATGTGTTAGTGATCTTCTAAATGGCGATTCAAACTGCGGCTATTGACACATATGCAGATGATTCTACACTACATACTGCgta
gi|6 : TTAAATGTCTTGCATTATAAACAATGTCTTCTTTTGTCGCATTCTCTCCTCTGCAACAG-------ATATAGGGCCAATG-TTACCTTC-TTGTtggaataagtgacctattagtgttattaaga
gi|7 : aatTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGG-CATcc
gi|8 : ATTTAA----TTAGCGTTGTGTTAACTCTAGCAAAGGCAGTTTTCATTTGATCTTCACCATACTTACACAA
gi|9 : TC--CTCTATCACACGTAGATGGTTTACGGCTGATG-TGGCCCTC-TTGTTTAtagttatcgta
Alignments
lowQualScore : 22222 4444444444 11 1 3333 222 1 11 55555555555555 1111 44444444444 1 1 2222 1 222 1 22222 1 1 1 222 22222 3333333333 33333333333333 222 111 22222222222 33333
lowQualScore : 1 1 44444 1 1 1 0000000000 77 7 1 7 1 1 1 5 5 1 1 5 0 2 2 1 1 7777 333 3 7 3 33 88 66666666666666 4444 1 55 0 7 3 6 3 1 1 1 1 33333333333 1 5 1 1 1 5 4444 5 111 5 1 1 2 77777 1 1 5 5 5 111 77777 1 9999999999 99999999999999 1 1 1 1 111 777 1 7 7 0 0 88888888888 33333
lowQualScore : . . ..... . . . .......... .. . . . . . . . . . . . . . . . . .... ... . . . .. .. .............. .... . .. . . . . . . . . . ........... . . . . . . .... . ... . . . . ..... . . . . . ... ..... . .......... .............. . . . . ... ... . . . . . ........... .....
lowQualScore : 0 0 55555 0 0 0 0000000000 55 3 0 3 0 0 0 2 8 0 0 8 7 0 0 0 0 0000 333 7 3 3 99 00 44444444444444 2222 0 55 8 1 1 7 3 0 0 0 0 55555555555 0 0 0 0 0 5 0000 5 000 0 0 0 5 00000 0 0 5 5 5 000 55555 0 5555555555 55555555555555 0 0 0 0 000 000 0 3 3 7 7 77777777777 33333
consensus : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
Reference ( family-69 ) : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|1 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTGCGACTACCGAGT----TATGGACAGCAGATCGGATATCCAAATAATAAAAAAGCTGCCAATTCACGCCTTATTTAATCAGACTAAATAGTCATCTCACCATAGATTTCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACGAGGGTTCAGTGCAACACTGTTCTGTCTGTATATAAACAAATAAAGAAATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCAGGATAACTAATGTCTGAGTTAAGACCCTTGAATTGTCAGAAAATA-ATTTATTTGACCTCGTGTACAGTCTTTCA---ACAGGTAAAATTTGGTA---GTTAATGTCGCTCTGGAACCCTTG-AATCGTTGAATAT--TG---------CA---TCAT----TGTCAAATTCTC--TTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTC-TTGTTTATGTATCAATACAGTAAATAAGGGCAATATTTCTTTGTTAACAGGAAATAAAGCAATTGGCGCATTTGTTCCTAAACACATTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTACACTGTAGCACTCACATTTTTCATTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGTATTTTTCATTT-----------AAACCTTACACAGTAGTTATATAATCATAATATCTTGTAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAATGTTGAAGTTATGACCCAT-AATCATAAAAAGAATGTGT-TAT---TTGATGTTGTGTGCTCTCTAGTACTTGCAGTTTTC-----ATCGTCACTGAATTT-CCTTAATATTAACCATAATAT-CTGTGACAAGTTC---AACTGGCCAAATAAATCGAATAAATGATGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTAT----CTTATAT--------GC---CACATTTTTCATTTGATCCTCACTAAAGTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTAATTAATGTCAGTTAAGGCCCTTGATTCTACTTTATGTTGATGATTTTCC-AATGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|10 : TACTTTATGTTGATGATTTTCCAA-TGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATGCTGCCCT
gi|11 : AGTT--TGACTATATTTCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGATATAGtgg
gi|12 : TGCGTTCTGCACTTTGATCTTCATCAAACTTTCCG-AGTTGTTGTATAATCATGATATCTTGAA
gi|13 : TT----TGTCATATTCTC--TTATGGCAGAGGTGAACAACTTAGCTCCAATG-TGACTCTC-TTGTTTca
gi|14 : --CTCTGCCAATTATGAACACTTAAGGGCCAATC-TGGCCCTCTTTGTT
gi|15 : attgccatTAACCATAATATATTG-AACGAGTTCTTGAACTGGCC-----AGTTGGATAAATATT
gi|16 : CGAGAAGGA-AACTACTGTCTGAGTTAAGTCCCTTGAATTGTCAAAAA
gi|17 : TC--TTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTC-TTGTT
gi|18 : CTC--TTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTC-TTGT
gi|19 : TGCTACAAATGAGCCATTTAGAGCCATTC-TTGCCCTC-TTGTTT
gi|2 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCTAACTTACACAACAGTCATC
gi|2 : tGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGTCATGTAGTTAATAAATATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAC----AGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCATTAAATAT--TG---------CA---TCTT----TGTCAAATTCTC--TTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTT-TTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcatctcaccatagattactggccttgtaccgattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatgtcatgtagttaataaatatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgagttcttgggcatgttcttgaattggatgagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaacaggtaaaatttggtagttaatgtcgcgctggaacccttgaatcattaaatattgcatctttgtcaaattctcttgtgccacagacaagtgattttgatcattttggctgttttgtttatgtatcaattcagtaaataagggcaatatttctttgttaaaaggaaataaagcaatcggcgcatttgttcctaaacactttctagaatttttagctcatctgagcaaaactcaagatgagggtttctgatagccttattaca
gi|20 : tggattatgtgcactcatttgtctgtgaatcttgatctaacttacacaacagtcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCAACAAGTGAGCTCTTTAGGGCCAATC-TGGCACTC-TTGT
gi|21 : TTTTGTTGTGTGCATTGTAACACTCACATTTTTCGTT
gi|3 : ttTGAACAAGTTCTTGAACTGGCCAATCAA-ATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAA-GTGTGCGTATTTGATGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACAC-GGATGTTTTGTAATCA--AAATATCTTG-------AACAG-GTCTT----TGGCATTGTCTC--CTCTGCCACAGGTGAGCAATTTAGGGCCAATC-TGGCCCTC-TTGTT
gi|4 : aaccatataAATTAGTGTCAGAGTTACAGCTTTTAAAT----AAAAAAGTGTATATATACATT-ATTTTGTGTGCGCTCTAGCACTCTCAGTTTTCATTTGATCTTAATCAAACTTACCT
gi|4 : taaG-ATCTT----AATCAAACTTAC--CTCTGCCACAGATGAGC--CCTAGGGCCAATC-TGGCCCTC-TTGTTctgccacagatgagccctagggccaatctggccctcttgttgta
gi|5 : taaaattagtgtcagagttacagcttttaaataaaaaagtgtatatatacattattttgtgtgcgctctagcactctcagttttcatttTAAAATCATTGATGCC---TAAAGAG-TTCACCCTACTATGTGTTAGTGATCTTCTAAATGGCGATTCAAACTGCGGCTATTGACACATATGCAGATGATTCTACACTACATACTGCgta
gi|6 : TTAAATGTCTTGCATTATAAACAATGTCTTCTTTTGTCGCATTCTCTCCTCTGCAACAG-------ATATAGGGCCAATG-TTACCTTC-TTGTtggaataagtgacctattagtgttattaaga
gi|7 : aatTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGG-CATcc
gi|8 : ATTTAA----TTAGCGTTGTGTTAACTCTAGCAAAGGCAGTTTTCATTTGATCTTCACCATACTTACACAA
gi|9 : TC--CTCTATCACACGTAGATGGTTTACGGCTGATG-TGGCCCTC-TTGTTTAtagttatcgta
blockSeqs : T T AGCAA T T T . . T A A T C T G N C T A N N N N C CTCG TTC G T T AT CT CATTATAAACAATG CTTT T TC A T A T T A T G TGATCTTCATC C . T A T A . A ACA . T G T ATTTG T A A A . TTG . T TTAGCG TAACTCTAGCAAAG G T C C . AG C A A ACATATGCAGA CTACA
blockSeqs : . . N N N N T N N N T G G C A C . A . . A CT AACAGG . A . A G A . A . ATG .
blockSeqs : . . T G . . CA . T . A G . .
blockSeqs : . A . A A . .
blockSeqs : . C . C G . .
blockSeqs : . G G . .
blockSeqs : . T G . .
blockSeqs : . A G . .
blockSeqs : . G G . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
finalCons : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
Alignments
lowQualScore : 22222 4444444444 11 1 3333 222 1 11 55555555555555 1111 44444444444 1 1 2222 1 222 1 22222 1 1 1 222 22222 3333333333 33333333333333 222 111 22222222222 33333
lowQualScore : 1 1 44444 1 1 1 0000000000 77 7 1 7 1 1 1 5 5 1 1 5 0 2 2 1 1 7777 333 3 7 3 33 88 66666666666666 4444 1 55 0 7 3 6 3 1 1 1 1 33333333333 1 5 1 1 1 5 4444 5 111 5 1 1 2 77777 1 1 5 5 5 111 77777 1 9999999999 99999999999999 1 1 1 1 111 777 1 7 7 0 0 88888888888 33333
lowQualScore : . . ..... . . . .......... .. . . . . . . . . . . . . . . . . .... ... . . . .. .. .............. .... . .. . . . . . . . . . ........... . . . . . . .... . ... . . . . ..... . . . . . ... ..... . .......... .............. . . . . ... ... . . . . . ........... .....
lowQualScore : 0 0 55555 0 0 0 0000000000 55 3 0 3 0 0 0 2 8 0 0 8 7 0 0 0 0 0000 333 7 3 3 99 00 44444444444444 2222 0 55 8 1 1 7 3 0 0 0 0 55555555555 0 0 0 0 0 5 0000 5 000 0 0 0 5 00000 0 0 5 5 5 000 55555 0 5555555555 55555555555555 0 0 0 0 000 000 0 3 3 7 7 77777777777 33333
consensus : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
Reference ( family-69 ) : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCNAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTNCGACTACCGAGNGCAATATGGACAGCAGGTCGGATATCCAANTGATANANAAGCTGCCAATTCACGCCTTATTTAATCAGGCTAGGTGGTCATCTCACCATAGATTNCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACNAGGGTTCAGTGCAACACTGTTCTGTCTGCACATAGACANATAAAGANATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGACGAGCAGGATAACTANTGTCTGAGTTAAGNCCCTTGAATTGTCAAAAAGTGTGCGTATTTGACGTCGTGTGCANTCTTNCAC--GCAGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCGTTAAATATCTTG-------AACAG-GTCTT----TGTCANATTCTC--CTCTGCCACAGGTGAGCGATTTAGGGCCAATC-TGGCCCTC-TTGTTTATGTATCAATNCAGTAAATAAGGGCAATATTTCTTTGTTAANAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACNTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTGCACTGTAGCACTCACATTTTTCGTTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGCGTTCTNCACTTTGATCTTCATCAAACCTTNCGCAGTNGTTGTATAATCATGATATCTTGNAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAGTGTCGGAGTTACGGCCCNTAAATCATAAAAAGAGTGTGTATATACATTGATNTTGTGTGCNCTCTAGCACTCGCAGTTTTCATTTGATCNTNACCGAACTTACCTTAATATTAACCATAATATACTGTGACGAGTTCTTGAACTGGCCAAATAAGTCGGATAAATGNTGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTATTAGCNTTGTGTTAACTCTAGCAAACGCANTTTTCATTTGATCCTCACCANANTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTNATTGATGCCAGTTAAGGNNCTTNACCCTACTTTATGTTGATGATTTTCCAAATGGCGTTTCAAACTGCGGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|1 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCAAACTTACACAACAGTCATCTAGTGCGAGATATTTCACTTCTCTAAGGAGCCTTTTAAAGTTTTTTATTTTGCGACTACCGAGT----TATGGACAGCAGATCGGATATCCAAATAATAAAAAAGCTGCCAATTCACGCCTTATTTAATCAGACTAAATAGTCATCTCACCATAGATTTCTGGCCTTGTACCGATTGTTTTGCATAATAAATGTCAGAATAATGGCTTTTGAATCATCAGTTATTGCACAATTTGGCATTGTGTACAAACTAGCAGCACCATAATATTTTTGGCTTTGATCACAGTGCAATGTCATGTAGTTAATAAATATATAACGAGGGTTCAGTGCAACACTGTTCTGTCTGTATATAAACAAATAAAGAAATAGAGCAGTGTTGCATTGAACAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCAGGATAACTAATGTCTGAGTTAAGACCCTTGAATTGTCAGAAAATA-ATTTATTTGACCTCGTGTACAGTCTTTCA---ACAGGTAAAATTTGGTA---GTTAATGTCGCTCTGGAACCCTTG-AATCGTTGAATAT--TG---------CA---TCAT----TGTCAAATTCTC--TTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTC-TTGTTTATGTATCAATACAGTAAATAAGGGCAATATTTCTTTGTTAACAGGAAATAAAGCAATTGGCGCATTTGTTCCTAAACACATTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACATTTGGCAGTAAATGTTTTGTTGTGTACACTGTAGCACTCACATTTTTCATTGCATCTTTGCCAAACTTACTATATAACAATAATATCTGAAATAACTTCTTAAACTTGCCAAATGAGATAGTAAACGTCAAAGTTATGGCCACTGAAAAAATAAACTATTAAAACTAAAACTAAAAATACAGGTGCTAAACTGATCAGACCCTGTGTTCACATTAGCACCTGTATTTTTCATTT-----------AAACCTTACACAGTAGTTATATAATCATAATATCTTGTAAAAGTTTTTTGAAACTGGCCAAATCAAGTAATTAATGTTGAAGTTATGACCCAT-AATCATAAAAAGAATGTGT-TAT---TTGATGTTGTGTGCTCTCTAGTACTTGCAGTTTTC-----ATCGTCACTGAATTT-CCTTAATATTAACCATAATAT-CTGTGACAAGTTC---AACTGGCCAAATAAATCGAATAAATGATGTTGGGATAATAGTCCTTAAAAGATTAAAAATTGCACTATTTAAAGTAT----CTTATAT--------GC---CACATTTTTCATTTGATCCTCACTAAAGTTACACAACCATAATAGCTTGGACAAGTTTTTAAAACTGGCCAAATTAGAGTAATTAATGTCAGTTAAGGCCCTTGATTCTACTTTATGTTGATGATTTTCC-AATGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATACTGCCCT
gi|10 : TACTTTATGTTGATGATTTTCCAA-TGGCATTTCAAACTGCAGCTTTTGGC----ATG----TGATC-----CTACATGCTGCCCT
gi|11 : AGTT--TGACTATATTTCTAAGGTTCAATGCAATACTGTTTTATCTGCACATAGACACATAAAGATATAGtgg
gi|12 : TGCGTTCTGCACTTTGATCTTCATCAAACTTTCCG-AGTTGTTGTATAATCATGATATCTTGAA
gi|13 : TT----TGTCATATTCTC--TTATGGCAGAGGTGAACAACTTAGCTCCAATG-TGACTCTC-TTGTTTca
gi|14 : --CTCTGCCAATTATGAACACTTAAGGGCCAATC-TGGCCCTCTTTGTT
gi|15 : attgccatTAACCATAATATATTG-AACGAGTTCTTGAACTGGCC-----AGTTGGATAAATATT
gi|16 : CGAGAAGGA-AACTACTGTCTGAGTTAAGTCCCTTGAATTGTCAAAAA
gi|17 : TC--TTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTC-TTGTT
gi|18 : CTC--TTCTACAACAGGTGAGCAAATTAGG--CAATCATGGCTCTC-TTGT
gi|19 : TGCTACAAATGAGCCATTTAGAGCCATTC-TTGCCCTC-TTGTTT
gi|2 : GGATTATGTGCACTCATTTGTCTGTGAATCTTGATCTAACTTACACAACAGTCATC
gi|2 : tGTCATCTCACCATAGATTACTGGCCTTGTACCGATTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGTCATGTAGTTAATAAATATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAGTTCTTGGGCATGTTCTTGAATTGGATGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAC----AGGTAAAATTTGGTA---GTTAATGTCGCGCTGGAACCCTTG-AATCATTAAATAT--TG---------CA---TCTT----TGTCAAATTCTC--TTGTGCCACAGACAAGTGATTT-TGATCATTT-TGGCTGTT-TTGTTTATGTATCAATTCAGTAAATAAGGGCAATATTTCTTTGTTAAAAGGAAATAAAGCAATCGGCGCATTTGTTCCTAAACACTTTCTAGAATTTTTAGCTCATCTGAGCAAAACTCAAGATGAGGGTTTCTGATAGCCTTATTACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcatctcaccatagattactggccttgtaccgattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatgtcatgtagttaataaatatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgagttcttgggcatgttcttgaattggatgagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcaacaggtaaaatttggtagttaatgtcgcgctggaacccttgaatcattaaatattgcatctttgtcaaattctcttgtgccacagacaagtgattttgatcattttggctgttttgtttatgtatcaattcagtaaataagggcaatatttctttgttaaaaggaaataaagcaatcggcgcatttgttcctaaacactttctagaatttttagctcatctgagcaaaactcaagatgagggtttctgatagccttattaca
gi|20 : tggattatgtgcactcatttgtctgtgaatcttgatctaacttacacaacagtcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCAACAAGTGAGCTCTTTAGGGCCAATC-TGGCACTC-TTGT
gi|21 : TTTTGTTGTGTGCATTGTAACACTCACATTTTTCGTT
gi|3 : ttTGAACAAGTTCTTGAACTGGCCAATCAA-ATAAATATTGTCAGAGTTATGGCACTTGAATTGTCAAAA-GTGTGCGTATTTGATGTTGTGTGCACTCTAACACTCGCAGTTTACATTTGATCTTCATTAAACTTACAC-GGATGTTTTGTAATCA--AAATATCTTG-------AACAG-GTCTT----TGGCATTGTCTC--CTCTGCCACAGGTGAGCAATTTAGGGCCAATC-TGGCCCTC-TTGTT
gi|4 : aaccatataAATTAGTGTCAGAGTTACAGCTTTTAAAT----AAAAAAGTGTATATATACATT-ATTTTGTGTGCGCTCTAGCACTCTCAGTTTTCATTTGATCTTAATCAAACTTACCT
gi|4 : taaG-ATCTT----AATCAAACTTAC--CTCTGCCACAGATGAGC--CCTAGGGCCAATC-TGGCCCTC-TTGTTctgccacagatgagccctagggccaatctggccctcttgttgta
gi|5 : taaaattagtgtcagagttacagcttttaaataaaaaagtgtatatatacattattttgtgtgcgctctagcactctcagttttcatttTAAAATCATTGATGCC---TAAAGAG-TTCACCCTACTATGTGTTAGTGATCTTCTAAATGGCGATTCAAACTGCGGCTATTGACACATATGCAGATGATTCTACACTACATACTGCgta
gi|6 : TTAAATGTCTTGCATTATAAACAATGTCTTCTTTTGTCGCATTCTCTCCTCTGCAACAG-------ATATAGGGCCAATG-TTACCTTC-TTGTtggaataagtgacctattagtgttattaaga
gi|7 : aatTTTCGACTACTGAGAGCAATATGGACAGCAAGTCAGATATTCAATTGATATATAA----------CACA--TTATTTAATCAGGCTAGGTGG-CATcc
gi|8 : ATTTAA----TTAGCGTTGTGTTAACTCTAGCAAAGGCAGTTTTCATTTGATCTTCACCATACTTACACAA
gi|9 : TC--CTCTATCACACGTAGATGGTTTACGGCTGATG-TGGCCCTC-TTGTTTAtagttatcgta