lowQualScore : 11111 2222222 1 111 1111111 6666666666666666666 33333333333333 1 1 1 1 111 111111111 22222222 1 1 22222222 3333 111 1 1 33 3333 111111111 111 666666666666666666666666666666 444444444 55555 1 4444444
lowQualScore : 44 44444 4 33 0 555 5555555 44 7 7 999 4 2222222 2222222222222222222 777 0 2 4 4 4 6 2 66666666666666 4 3 0 1 5 2 8 5 0 4 2 0 0 4 88 000 00 7 2 3 999999999 22222222 9 5 44 8 5 2 88888888 4444 111 6 0 5 2 5 22 1 7777 555555555 7 0 3 000 1 111111111111111111111111111111 777 999999999 6 777 22222 6 5 0000000 4
lowQualScore : .. ..... . .. . ... ....... .. . . ... . ....... ................... ... . . . . . . . .............. . . . . . . . . . . . . . . .. ... .. . . . ......... ........ . . .. . . . ........ .... ... . . . . . .. . .... ......... . . . ... . .............................. ... ......... . ... ..... . . ....... .
lowQualScore : 66 99999 9 99 6 000 4444444 66 5 6 888 0 4444444 0000000000000000000 888 8 0 2 4 4 0 7 33333333333333 4 9 2 8 2 8 5 6 7 4 4 9 2 4 44 999 55 1 2 6 111111111 22222222 2 0 55 8 0 2 00000000 5555 000 0 8 4 2 0 00 2 7777 333333333 3 7 7 333 0 777777777777777777777777777777 555 555555555 0 000 00000 0 0 0000000 0
consensus : TCATCATCA--TCTCTA----GTAATCGC--ATCCCTCTGGAA---GAGTATTCTCGC---GATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAA-A-T-AGTT--ANTTTTGTACA---GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCT---CCCAA--GGGCCGACTGGAAC-CCTTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGG--GTTTCCC-AC-T-TAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCCGCCCTACGNTGGACCATCTTTAGTTGNTTAACCAGGCAGCCAGTGTGGGGGGA---TACCCTNG-ATT-GGCC---GG---ACGTACGTNNNGTATGCTTTCNACTTGGCTTTTGGTGAACNTGATGCTA-TATGTTTCTCCTGATGAAGGACATGGTGGGGTTTGCCNTTTTGGTTGTGT
Reference ( gi|1 ) : TCATCATCA--TCTCTT----GTAATCAC--ATCCCTCTGGAA---GAGTATTCTCGA---GAAGTGGTTAAAATACT--GAGCACTCGAAGCAGTCAAATCAG-C-TT-T-----T-ACAGATAAAA-ATTAAGTT--ATTTTTCTACA---GTGATATTAAAAGAAGAT-AAAAACATCAACGGTGAAA-CTAGACGACACCCAGTCT---TACAA--GGTTCGACTGGAAC-CTTTCGAGGATGGGCTGGCTGACTAACTCAGGTGGAAGTCTGTTCTAGAGAGCAATGGACACCGGATAGCAACTGTTCAGAAATGCGCCTTTCTTCACAGATAGCTGGATAAACTGATGATTGTGCCCTCTTGTGAAAGTTCTAGTTTGTCTAAGTGGAGGACATG-----GTCTGGTGTCAACTAGATTGTTGTAGATTTTGTAGAACAGTGTGACCCGGACAGTGTTGCAACGGCGCTTG-GG--GTTTTAC-AC-T-TAGGTCTACCAACATGTCAGTAACACTGATAGTCCTTGGGTAGTCATGCTATACAAAACGAGCAGCTGCCCTGCGCTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTGGGAGAACCATACTCTAGGATT-GACC---GG---ACATATGTGCGGTATGCTTTTGAATTTCATTCTGATGAGCATGATGCTAATATATTTCTGCTGATGAAGGATATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|4 : TCCTCATCA--TCTCTA----GTAACCGCGCATCCC-CTGGAA---GAGTATTCTCAA---GATGTGGTTAAAATACT--GAACACTCGCAGCAGTCAGATCAGAT-TT-T-----T-ACAAATAAA-----AAGTT--CACTTTGTACA---GTGATAGTAAAAGAAGGT--AAAACATCAACGGTGAAA-CAAGATGGCACCTCGTCT---CCCAA--GGGTCGTCTGGAAC-CCTTCAAGT-TGGGCTGACTGACTCCCTCAGGCGGAGGCCCATTCCAGA-AATAATGGACGCCGGATAGTAG-TATTCAATTATGTGCTCGCATTTGCAGATAACTGGATAAACTGATGATTGTGTCTCCTTAT--AAATT------------AGTGGAAGACTTGGTC--GTCTGGTGTCAACTAGGTTGTTGTATATTTTGTAGAACATTTTGTTCTAGGCATCGTTGCGACGGCGCTGGAGG--GTTTAAA-ACAT-TAGGTCTACCTACATGTCAGTGAT-CTGTTAGTCATTG
gi|3 : TCATCACCA--TCTCAA----GTAATCGC--AACACTCTGGAT---AAGAATTCTCGT---GATATTGTTAAAATAAT--GAGCACTAGCAGCTGTCAGATCCG-CACT-T-----T-ACAGATAAAA---T--GTCC-ATTTTGC-ACA---GTGATATCAAAAGATGTT-AAAA-CATAAACGGCGAAG-CTAGATGAAACCCAATCT---CCCAA--GGTCCGGCTGGAAC-CTTTCAAGAGAAGGCTGACGGACCACCTCAGGTGGAAGTCCGTTCCAGAGAACAATAG----CAGAT---AACTG----GA--------------CA-----AACTGG------TGAT---TGTGACACCTTGTGGAATATCGAGTTTGTCTAAGTGAAGGACTTG-----GTCTTGTGTCAATTAGGTTGTTGTAGATTGTGTAGAACATTGTGACCTGGGCATTGTTGCGACGGCAC-TG-GATTGTTTCTC-AC-TCTAGATCTACCAACATATCAGTGACACTGCTTGTCCTTGTGTAATCGTGCTTGATAAAGCA---AATTGCCTTACGTTGGACCATCTTTAGTTGTTCAACCAGGt
gi|7 : aTCATCACCA--TCTCTTAGAAGTGATCAC--ATCCCTCTGGAA---GAGTATTCTCAT---GATGTGGTTAAAATGCTTCAAGCACTTGCAGCAGTCATATCAGTT-TT-T-----T-ACA---AAAG-A--AAGTT--CACTTTGTACA---GTGATAT----------C-AAAAACATCAACAGTGAAA-CTAGATGGCACTCAGTCT---CCGAATGGGT--AACTGGAAC-CCTTTGAGGGTGGTCTGGCTGAGTATCTCACGTGAGAGTCTGTTCCAGATAACAATGGA
gi|19 : TCACCATCA--CCTCTT----GTAATCGC--ATATCCCTAGAA---TAGTATTCACAC---GATGTGGTTAACATATC--CAGCATTCGCAGTAATCttaagtctgttaagtaacatgtcagtgatataagtc
gi|23 : gTCAACATCA--TCTCTA----GTAATCGC--ATCCCCCTGGAA---AGATATTCTCGC---GA
gi|6 : CATCATCG--TCTCCA----GCTACCGC--ATCCCACTGGAA---GAGTATTCTCGC---GGTGTCGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-CATT-TAGGTAT-ACAAATAAAA-GTTCAATT-------TGTACA---GTGATATTTAAAGAAGGT-AAATATATAAACGGTGAAA-CTGAATCGCACCCAGTCT---CCCGG--GGT-CAACTGCAAC-CCTCCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATGGTAGCTATTCAGATGTTCGCTTTTCTTTGCAGATAAAAGGACAAACTGATGCTTGTGCCCCATTGTG-------------GTATGA--GGAGGACTTC-----GTCTAGTGTCAAta
gi|11 : CATCATCA--TCTTTA----GTAATCGC--TTCCTCCAGGAA---GAGTATTCTCAC-----AGTGGTTAAAATACT--GAGAGCTCGCAACAGTCAGATAAC-C-TT-T-----TTACAGACAAAA-AGT---TT--ATTTTG-TACA---GTGATAATAAAAGAAAAT-AAAAACATCAGCGGTGAAA-CTAGATGGCACTC
gi|10 : CATCTTCA--TCTTTT----GTAATCGC--ATCCCTCTAGGT---GAGTAGT-TCGC---GATGTGGTTAAAATACT--GAGCGCTCGCAGCAGTCAAATCAGAT-TT-T-----T-ACAGATAAAA-
gi|2 : ATCATCA--TCTTTA----GTTATCGC--ATCCCCTTGGAA---G--TAT-------------------AAATAAT--GAGCACTCGCAGCAGTCATTTCAA-C-TT-T-----TTACAGATAAAACATT----T---TTTTTGTACA---GCGATGTTAAAATAAGAT-ATAAACATCAA---TGAAA-CCAGATGGCCTCCAGT---------------------GAAACTCATTTGATAGTGGGCTGAC--ACTACCTCAGGTAGGGGTCCATTCCAGAGAACAGTGGACACCGAATAGTAACTGTTCAGATATGAGCTTTTCTTTGAAAATAACTGGATAAACTAATGATTGTGCCCCCTTGTGGAAA-TCTAGTTTGTCTAAGTGGAGGACTTG-----ATTTGTTGTCAACTAGATTGTTGTAGATTTTGTAGAACATTGTGATTGGGTCATTGTTGTAACAGCGCTGGAGA--GTTTCCCTAT-T-TAGGTCTACCAACATGTCAGTGACACTTCTAGCCCTTGTGTTGTCATGCTTGACAAAACAAGCAGCC--------CTGGACCATCTTTAGTTGATTAATCAGGCAATCAGTGTGAGGGGAGCATA---TAG--TT-AACTTAAGGAGTACATACGTTCTGTATATTTTCCACTTGGCTTTTGGTGAATATGATAC---TATGTTTCTCCTGATGAAG--T----TGGGGTTTGCCTTTTTGGTTGTggccatgcactttattaaaggcgtggcacccagtttcataagggccgtctgcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|16 : ATCATCAATTCGCTT------AATCGC--ATCCCTCTGTATTCTGAGTATTCTCGC---AA--TGATTAAAATACT--GAACACGCGCAGCATTCAGTTTGG-C-TT-T-----TAACAGGTAAAA-
gi|21 : TCTTCA--TCTCTA----GTAATCGT--ACCTGTCTTGAA---GAGTATTCTCAA---Gtt
gi|9 : tcattCATCG--TCTCTA----GTAACCGC--ATCCCTCTACGA---GAGTACTCTCGC---GATGTGGTTAAAATACT--GAGCACCTG------------CAG-C-TTGT-----T-ACAGATAA-----TAAGTTCAATTTGTACATATTTGTGATATTAAAAGG---T-AAAAATATCATTGGTTAGA-CTAGATGGCACCCAGTCTCACTACA------CCGACTGGAAC-CCTTCCAGAGAGGCCTGACTGATTACCTC---------TACGTTCCAGAGAACAATTGACGCTGGATAATATCTGTTCAGATATACGCtgtggat
gi|18 : ----GTAATCGA--ATCCCTCTGGAA---GAGTATTCTCGACGCGATGTCATTAAAATACT--GAAAACTCt
gi|12 : agtagttaacaccgatggcactgtaAATCGC--ATCCCTTTAGAA---GAATATTCTCAT---GGTGTAGT-AAAATACT--AAGCACTAATAGCAGTCAGA---G----T-T-----C-AC----------------------TTTATACA---GTAGCATTAAAAGTAGATTAAAAAT-TCAACAGTGAAA-CTAGATGGCACCAAGTCT---CCCAT--GGGCCGACTGGAAC-CCTtg
gi|8 : -----T-ACAGATAAAA-A--GAGTT--AATTTTGTAGA---A-------GAAAGAAGGT-AAAAACATCAACGGTGAAAATTAGATGACACCAAGTCT---CCCAA--AGGCTGACTACAAC-CCTTCGGTGGTGGGCTGGATGACAACCTTAGATGGAAGGCAGTTCAAGAAAACAATGGACACTGGATTGAAGCTGTTCATATATGCGTTTTTCTTTGCAATTAACTGAATAAAGTGTTGAGTGTGCCCTCTTTTTGAATTTCTAGTTTGTCTAAGTGGGGGACATG-----GTCTGATGTCGACTA
gi|5 : TCC---CATAA--GGGTCGACTGGAAC-CTATCGAGGGTTAGTTGGCTGACTACCTCATGTGGTAG------CT-GAGAGCATTGGACGCTTGATAGAAGCTGTTTCGAAA--------------------ACTAAATAAATACATAAGTGTGCCCATTTGTGAAGTTTGCAGTTTGTCGAAGTGGAGAACTTG-----GTCTGATGTCAACCAGGTTGTTATAGATTTGGAAGAACATTGTGACACGGGTATCGTTGTGACGGCGCTGA-GG--GTTTCCCAAT-T-TAGATCCACGAACATTTCAGCGATACAACTGGCCCTTGTGTAGTCATGTTTGACAAATCG---AGCTGCCCTACGATTGAGT-TCTCTGATTGGCT------GCAGCCAGTGTGGGGG-----TACCCTGGTATT-GGTC---GG---ACATA
gi|17 : agtTGGGCTGGTGGACTACATCATGTGGAAGCCAATTCCAGAGAACAATGTACGCCGGATAGAAACTGTTCAGATAT
gi|20 : gggtgGGTGGAGGCTGGTTCCAGAAAACAATGGACACCGGATAGAAACTGTTCCTAAATGCatcttctt
gi|13 : ctTGGGCGCCGAATAGTAGCTGATGAGATATGCGCTTTTCTTCGCAGATAACTGGGTGCACTGATAATTGTGCCCCCTTGTGGACTTTTTAGTTTGTCTAAGTGGAGGACTTT-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGagt
gi|24 : CCGGATAAAAACTATTCAGATATGCGGTTTTCTTTGCAGATAa
gi|15 : TATCTGGATTAACTGTTAGTTATGCCCTCTTGTGGAATTTCTTGTTTGTGTAAGTGAAGGACTTGACTTTGTCTGGTGTCAGCTAA---GTTGTAGATTTAATAGAA
gi|22 : CCAACCTGTCAGTGACATTGCTGGTCTTTGTTAAGTCATATTTGACAAAACgtccaagtctaacc
gi|14 : GTTGAAGAA---TACTCTTTGATTTGGCC---AG---ACGTATGTGAGGTATGCTTTCAACTTGGCTTTTGATGAACCTGATGCTA---TGTTTCTCCTGATGAAGGACATGGTAGAGTTTGCCATTTTGGTTATGTcaa
Alignments
lowQualScore : 111 1111111 444444 111 11111 11111 111 111 4444 22222222222 444
lowQualScore : 44 66666 33 444 444 1 0 44 777 3 1111111 000000 444 00000 0 1 4 4 0 55 11 4 0 0 1 2 2 0 2 0 1 1 1 00 88888 1 1 0 3 8 222 8 2 777 8 44 4 3 1 444 0 5555 4 99999999999 6 2 0 333 1 0 1 444 999 6 0 1
lowQualScore : .. ..... .. ... ... . . .. ... . ....... ...... ... ..... . . . . . .. .. . . . . . . . . . . . . .. ..... . . . . . ... . . ... . .. . . . ... . .... . ........... . . . ... . . . ... ... . . .
lowQualScore : 22 11111 77 777 777 1 1 22 111 6 3333333 333333 666 00000 9 4 0 0 5 00 77 0 1 7 7 0 2 1 8 5 7 9 8 88 99999 7 4 8 2 0 444 0 2 555 2 00 5 2 0 555 7 5555 2 22222222222 5 0 7 000 0 7 0 000 333 7 7 0
consensus : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAA-A---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTGGGGGAA-CATACTCT-N-G-ATTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
Reference ( family-689 ) : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAA-AT--AGTTANTTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCCC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCCGCCCTACGNTGGACCATCTTTAGTTGNTTAACCAGGCAGCCAGTGTGGGGGG---ATACCCT-N-G-ATT---GGCCGGACGTACGTNNNGTATGCTTTCNACTTGGCTTTTGGTGAACNTGATGCT-ATATGTTTCTCCTGATGAAGGACATGGTGGGGTTTGCCNTTTTGGTTGTGT
gi|1 : TCATCATCA--TCTCT----TGTAATCAC--ATCCCTCTGGAA---GAGTATTCT---CGAGAAGTGGTTAAAATACT--GAGCACTCGAAGCAGTCAAATCAG-C-TT-T-----T-ACAGATAAAA-ATTAAGTTATTTTTCTACA-----GTGATATTAAAAGAAGAT-AAAAACATCAACGGTGAAA-CTAGACGACACCCAGTCTTACA--AGGTTCGACTGGAACCT-TTCGAGGATGGGCTGGCTGACTAACTCAGGTGGAAGTCTGTTCTAGAGAGCAATGGACACCGGATAGCAACTGTTCAGAAATGCGCCTTTCTTCACAGATAGCTGGATAAACTGATGATTGTGCCCTCTTGTGAAAGTTCTAGTTTGTCTAAGTGGAGGACATG-----GTCTGGTGTCAACTAGATTGTTGTAGATTTTGTAGAACAGTGTGACCCGGACAGTGTTGCAACGGCGCTTG-GGGTTTTAC-A-C-T-TAGGTCTACCAACATGTCAGTAACACTGATAGTCCTTGGGTAGTCATGCTATACAAAACGAGCAGCTGCCCTGCGCTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTGGGAGAACCATACTCTAG-G-ATT---GACCGGACATATGTGCGGTATGCTTTTGAATTTCATTCTGATGAGCATGATGCTAATATATTTCTGCTGATGAAGGATATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|10 : CATCTTCA--TCTTT----TGTAATCGC--ATCCCTCTAGGT---GAGTAGT-T---CGCGATGTGGTTAAAATACT--GAGCGCTCGCAGCAGTCAAATCAGAT-TT-T-----T-ACAGATAAAA-
gi|10 : TGGCACCCAGTTTCATA--AGGGCCGTCTGggccatgcactttattaaaggcgtggcacccagtttcataagggccgtctgcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|11 : catcttcatcttttgtaatcgcatccctctaggtgagtagttcgcgatgtggttaaaatactgagcgctcgcagcagtcaaatcagatttttacagataaaaggccatgcactttattaaaggcgCATCATCA--TCTTT----AGTAATCGC--TTCCTCCAGGAA---GAGTATTCT---CACA--GTGGTTAAAATACT--GAGAGCTCGCAACAGTCAGATAAC-C-TT-T-----TTACAGACAAAA-A----GTTTATTTTGTACA-----GTGATAATAAAAGAAAAT-AAAAACATCAGCGGTGAAA-CTAGATGGCACTCcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|12 : AATCGC--ATCCCTTTAGAA---GAATATTCT---CATGGTGTAGT-AAAATACT--AAGCACTAATAGCAGTCAGA----------------------------------GTTCACTTTATACA-----GTAGCATTAAAAGTAGATTAAAAAT-TCAACAGTGAAA-CTAGATGGCACCAAGTCTCCCA--TGGGCCGACTGGAACCC-T
gi|13 : TGGGCGCCGAATAGTAGCTGATGAGATATGCGCTTTTCTTCGCAGATAACTGGGTGCACTGATAATTGTGCCCCCTTGTGGACTTTTTAGTTTGTCTAAGTGGAGGACTTT-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTG
gi|14 : GTTGAAGA---ATACTCT-TTG-ATTT--GGCCAGACGTATGTGAGGTATGCTTTCAACTTGGCTTTTGATGAACCTGATGC---TATGTTTCTCCTGATGAAGGACATGGTAGAGTTTGCCATTTTGGTTATGTa
gi|15 : TATCTGGATTAACTGTTAGTTATGCCCTCTTGTGGAATTTCTTGTTTGTGTAAGTGAAGGACTTGACTTTGTCTGGTGTCAGCTAA---GTTGTAGATTTAATAGAAta
gi|16 : ATCATCAATTCGCT------TAATCGC--ATCCCTCTGTATTCTGAGTATTCT---CGCAATG--ATTAAAATACT--GAACACGCGCAGCATTCAGTTTGG-C-TT-T-----TAACAGGTAAAA-gtccaagtctaacc
gi|17 : GTGGGCTGGTGGACTACATCATGTGGAAGCCAATTCCAGAGAACAATGTACGCCGGATAGAAACTGTTCAGATATA---TCTTCTTtt
gi|18 : gggtCTGT----AGTAATCGA--ATCCCTCTGGAA---GAGTATTCTCGACGCGATGTCATTAAAATACT--GAAAACTC
gi|19 : agtagttaacaccgatggcaTCACCATCA--CCTCT----TGTAATCGC--ATATCCCTAGAA---TAGTATTCA---CACGATGTGGTTAACATATC--CAGCATTCGCAGTAATCtg
gi|2 : gATCATCA--TCTTT----AGTTATCGC--ATCCCCTTGGAA---G--TAT-------------------AAATAAT--GAGCACTCGCAGCAGTCATTTCAA-C-TT-T-----TTACAGATAAAACAT----TT-TTTTTGTACA-----GCGATGTTAAAATAAGAT-ATAAACATCAA---TGAAA-CCAGATGGCCTCCAGT------------------GAAACTCATTTGATAGTGGGCTGAC--ACTACCTCAGGTAGGGGTCCATTCCAGAGAACAGTGGACACCGAATAGTAACTGTTCAGATATGAGCTTTTCTTTGAAAATAACTGGATAAACTAATGATTGTGCCCCCTTGTGGAA-ATCTAGTTTGTCTAAGTGGAGGACTTG-----ATTTGTTGTCAACTAGATTGTTGTAGATTTTGTAGAACATTGTGATTGGGTCATTGTTGTAACAGCGCTGGAGAGTTTCCCTA-T-T-TAGGTCTACCAACATGTCAGTGACACTTCTAGCCCTTGTGTTGTCATGCTTGACAAAACA---AGCAGCCC-----TGGACCATCTTTAGTTGATTAATCAGGCAATCAGTGTGAGGGGAGCATATAGT-T-A-ACTTAAGG-AGTACATACGTTCTGTATATTTTCCACTTGGCTTTTGGTGAATATGATAC---TATGTTTCTCCTGATGAAG----T--TGGGGTTTGCCTTTTTGGTTGT
gi|20 : GGTGGAGGCTGGTTCCAGAAAACAATGGACACCGGATAGAAACTGTTC
gi|21 : ctTCTTCA--TCTCT----AGTAATCGT--ACCTGTCTTGAA---GAGTATTCT---CAAG-TGTGGctaaatgcagt
gi|22 : tcattCCAACCTGTCAGTGACATTGCTGGTCTTTGTTAAGTCATATTTGACAAAACat
gi|23 : TCAACATCA--TCTCT----AGTAATCGC--ATCCCCCTGGAA---AGATATTCT---CGCGATcaa
gi|24 : CCGGATAAAAACTATTCAGATATGCGGTTTTCTTTGCAGATAa
gi|3 : TCATCACCA--TCTCA----AGTAATCGC--AACACTCTGGAT---AAGAATTCT---CGTGATATTGTTAAAATAAT--GAGCACTAGCAGCTGTCAGATCCG-CACT-T-----T-ACAGATAAAA--T---GTCCATTTTGCACA-----GTGATATCAAAAGATGTT-AAAA-CATAAACGGCGAAG-CTAGATGAAACCCAATCTCCCA--AGGTCCGGCTGGAACCT-TTCAAGAGAAGGCTGACGGACCACCTCAGGTGGAAGTCCGTTCCAGAGAACAATAG----CAGAT---AACTG----GACA-------------------AACTGG------TGA---TTGTGACACCTTGTGGAATATCGAGTTTGTCTAAGTGAAGGACTTG-----GTCTTGTGTCAATTAGGTTGTTGTAGATTGTGTAGAACATTGTGACCTGGGCATTGTTGCGACGGCACTGGATTGTTTCTC-A-C-TCTAGATCTACCAACATATCAGTGACACTGCTTGTCCTTGTGTAATCGTGCTTGATAAAGCA---AATTGCCTTACGTTGGACCATCTTTAGTTGTTCAACCAGG
gi|4 : aTCCTCATCA--TCTCT----AGTAACCGCGCATCCC-CTGGAA---GAGTATTCT---CAAGATGTGGTTAAAATACT--GAACACTCGCAGCAGTCAGATCAGAT-TT-T-----T-ACAAATAAAA-----AGTTCACTTTGTACA-----GTGATAGTAAAAGAAGGT--AAAACATCAACGGTGAAA-CAAGATGGCACCTCGTCTCCCA--AGGGTCGTCTGGAACCC-TTC-AAGTTGGGCTGACTGACTCCCTCAGGCGGAGGCCCATTCCAGA-AATAATGGACGCCGGATAGTAG-TATTCAATTATGTGCTCGCATTTGCAGATAACTGGATAAACTGATGATTGTGTCTCCTTAT-AAATT-------------AGTGGAAGACTTGGTC--GTCTGGTGTCAACTAGGTTGTTGTATATTTTGTAGAACATTTTGTTCTAGGCATCGTTGCGACGGCGCTGGAGGGTTTAAA-A-CAT-TAGGTCTACCTACATGTCAGTGAT-CTGTTAGTCATTGT
gi|5 : AGT-TCCCATAAGGGTCGACTGGAACCT-ATCGAGGGTTAGTTGGCTGACTACCTCATGTGGTAG-------CTGAGAGCATTGGACGCTTGATAGAAGCTGTT-----------------TCGAA---AACTAAATAAATACATAAGTGTGCCCATTTGTGAAGTTTGCAGTTTGTCGAAGTGGAGAACTTG-----GTCTGATGTCAACCAGGTTGTTATAGATTTGGAAGAACATTGTGACACGGGTATCGTTGTGACGGCGCTG-AGGGTTTCCC-AAT-T-TAGATCCACGAACATTTCAGCGATACAACTGGCCCTTGTGTAGTCATGTTTGACAAATCG---AGCTGCCCTACGATTGAGT-TCTCTGATTGGCT------GCAGCCAGTGTGGGGG-----TACCCT-G-GTATT---GGTCGGACATA
gi|6 : CATCATCG--TCTCC----AGCTACCGC--ATCCCACTGGAA---GAGTATTCT---CGCGGTGTCGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-CATT-TAGGTAT-ACAAATAAAA------GTTCAATTTGTACA-----GTGATATTTAAAGAAGGT-AAATATATAAACGGTGAAA-CTGAATCGCACCCAGTCTCCCG---GGGTCAACTGCAACCC-TCCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATGGTAGCTATTCAGATGTTCGCTTTTCTTTGCAGATAAAAGGACAAACTGATGCTTGTGCCCCATTGTGG---------------TATGAGGAGGACTTC-----GTCTAGTGTCAA
gi|7 : TCATCACCA--TCTCTTAGAAGTGATCAC--ATCCCTCTGGAA---GAGTATTCT---CATGATGTGGTTAAAATGCTTCAAGCACTTGCAGCAGTCATATCAGTT-TT-T-----T-ACA---AAAG-AA--AGTTCACTTTGTACA-----GTGATAT----------C-AAAAACATCAACAGTGAAA-CTAGATGGCACTCAGTCTCCGA--ATGGGTAACTGGAACCC-TTTGAGGGTGGTCTGGCTGAGTATCTCACGTGAGAGTCTGTTCCAGATAACAATGGA
gi|8 : -----T-ACAGATAAAA-AG--AGTTAATTTTGTAGA-----A-------GAAAGAAGGT-AAAAACATCAACGGTGAAAATTAGATGACACCAAGTCTCCCA--AAGGCTGACTACAACCC-TTCGGTGGTGGGCTGGATGACAACCTTAGATGGAAGGCAGTTCAAGAAAACAATGGACACTGGATTGAAGCTGTTCATATATGCGTTTTTCTTTGCAATTAACTGAATAAAGTGTTGAGTGTGCCCTCTTTTTGAATTTCTAGTTTGTCTAAGTGGGGGACATG-----GTCTGATGTCGACTAttaagtctgttaagtaacatgtcagtgatataagtc
gi|9 : CATCG--TCTCT----AGTAACCGC--ATCCCTCTACGA---GAGTACTCT---CGCGATGTGGTTAAAATACT--GAGCACCTGCAGC--------------TTGT-----T-ACAGATAATA-A----GTTCAATTTGTACATATTTGTGATATTAAAAG---GT-AAAAATATCATTGGTTAGA-CTAGATGGCACCCAGTCTCACT--ACA-CCGACTGGAACCC-TTCCAGAGAGGCCTGACTGATTACCTC---------TACGTTCCAGAGAACAATTGACGCTGGATAATATCTGTTCAGATATACGCT
Alignments
lowQualScore : 222 11111 11111 11111 111 111 1 222 11111 11 222
lowQualScore : 44 66666 33 444 444 1 0 44 000 3 88888 6 1 99999 0 00000 0 1 4 4 0 55 11 4 0 0 1 2 2 0 2 0 1 1 1 00 88888 1 1 0 1 8 222 8 0 777 44 4 3 0 3 0 3 444 1 44444 33 6 0 3 333 999 6
lowQualScore : .. ..... .. ... ... . . .. ... . ..... . . ..... . ..... . . . . . .. .. . . . . . . . . . . . . .. ..... . . . . . ... . . ... .. . . . . . . ... . ..... .. . . . ... ... .
lowQualScore : 22 11111 77 777 777 1 1 22 777 6 33333 7 2 99999 7 00000 9 4 0 0 5 00 77 0 1 7 7 0 2 1 8 5 7 9 8 88 99999 7 4 8 0 0 444 0 3 555 00 5 2 2 2 8 3 777 2 00000 88 5 7 7 333 333 7
consensus : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
Reference ( family-689 ) : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAA-CATACTCTN-GATTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|1 : TCATCATCA--TCTCT----TGTAATCAC--ATCCCTCTGGAA---GAGTATTCT---CGAGAAGTGGTTAAAATACT--GAGCACTCGAAGCAGTCAAATCAG-C-TT-T-----T-ACAGATAAAAATTAAGTTATTTTTCTACA-----GTGATATTAAAAGAAGAT-AAAAACATCAACGGTGAAA-CTAGACGACACCCAGTCTTACA--AGGTTCGACTGGAACCT-TTCGAGGATGGGCTGGCTGACTAACTCAGGTGGAAGTCTGTTCTAGAGAGCAATGGACACCGGATAGCAACTGTTCAGAAATGCGCCTTTCTTCACAGATAGCTGGATAAACTGATGATTGTGCCCTCTTGTGAAAGTTCTAGTTTGTCTAAGTGGAGGACATG-----GTCTGGTGTCAACTAGATTGTTGTAGATTTTGTAGAACAGTGTGACCCGGACAGTGTTGCAACGGCGCTTG-GGGTTTTAC-A-C-T-TAGGTCTACCAACATGTCAGTAACACTGATAGTCCTTGGGTAGTCATGCTATACAAAACGAGCAGCTGCCCTGCGCTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGAGAACCATACTCTA-GGATT--GACCGGACATATGTGCGGTATGCTTTTGAATTTCATTCTGATGAGCATGATGCTAATATATTTCTGCTGATGAAGGATATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|10 : CATCTTCA--TCTTT----TGTAATCGC--ATCCCTCTAGGT---GAGTAGT-T---CGCGATGTGGTTAAAATACT--GAGCGCTCGCAGCAGTCAAATCAGAT-TT-T-----T-ACAGATAAAA
gi|10 : TGGCACCCAGTTTCATA--AGGGCCGTCTGggccatgcactttattaaaggcgtggcacccagtttcataagggccgtctgcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|11 : catcttcatcttttgtaatcgcatccctctaggtgagtagttcgcgatgtggttaaaatactgagcgctcgcagcagtcaaatcagatttttacagataaaaggccatgcactttattaaaggcgCATCATCA--TCTTT----AGTAATCGC--TTCCTCCAGGAA---GAGTATTCT---CACA--GTGGTTAAAATACT--GAGAGCTCGCAACAGTCAGATAAC-CTTT-T-----T-ACAGAC-AAAA---AGTTTATTTTGTACA-----GTGATAATAAAAGAAAAT-AAAAACATCAGCGGTGAAA-CTAGATGGCACTCcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|12 : AATCGC--ATCCCTTTAGAA---GAATATTCT---CATGGTGTAGT-AAAATACT--AAGCACTAATAGCAGTCAGA---------------------------------GTTCACTTTATACA-----GTAGCATTAAAAGTAGATTAAAAAT-TCAACAGTGAAA-CTAGATGGCACCAAGTCTCCCA--TGGGCCGACTGGAACCC-T
gi|13 : TGGGCGCCGAATAGTAGCTGATGAGATATGCGCTTTTCTTCGCAGATAACTGGGTGCACTGATAATTGTGCCCCCTTGTGGACTTTTTAGTTTGTCTAAGTGGAGGACTTT-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTG
gi|14 : ATACTCTTTGATTT--GGCCAGACGTATGTGAGGTATGCTTTCAACTTGGCTTTTGATGAACCTGATGC---TATGTTTCTCCTGATGAAGGACATGGTAGAGTTTGCCATTTTGGTTATGTa
gi|15 : gttgaagaTATCTGGATTAACTGTTAGTTATGCCCTCTTGTGGAATTTCTTGTTTGTGTAAGTGAAGGACTTGACTTTGTCTGGTGTCAGCTAA---GTTGTAGATTTAATAGAAta
gi|16 : ATCATCAATTCGCT------TAATCGC--ATCCCTCTGTATTCTGAGTATTCT---CGCAATG--ATTAAAATACT--GAACACGCGCAGCATTCAGTTTGG-C-TT-T-----TAACAGGTAAAAgtccaagtctaacc
gi|17 : GTGGGCTGGTGGACTACATCATGTGGAAGCCAATTCCAGAGAACAATGTACGCCGGATAGAAACTGTTCAGATATA---TCTTCTTtt
gi|18 : gggtCTGT----AGTAATCGA--ATCCCTCTGGAA---GAGTATTCTCGACGCGATGTCATTAAAATACT--GAAAACTC
gi|19 : agtagttaacaccgatggcaTCACCATCA--CCTCT----TGTAATCGC--ATATCCCTAGAA---TAGTATTCA---CACGATGTGGTTAACATATC--CAGCATTCGCAGTAATCtg
gi|2 : gATCATCA--TCTTT----AGTTATCGC--ATCCCCTTGGAA---G--TAT-------------------AAATAAT--GAGCACTCGCAGCAGTCATTTCAA-C-TT-T-----TTACAGATAAAAC---ATTTT-TTTTGTACA-----GCGATGTTAAAATAAGAT-ATAAACATCAA---TGAAA-CCAGATGGCCTCCAGT------------------GAAACTCATTTGATAGTGGGCTGAC--ACTACCTCAGGTAGGGGTCCATTCCAGAGAACAGTGGACACCGAATAGTAACTGTTCAGATATGAGCTTTTCTTTGAAAATAACTGGATAAACTAATGATTGTGCCCCCTTGTGGAA-ATCTAGTTTGTCTAAGTGGAGGACTTG-----ATTTGTTGTCAACTAGATTGTTGTAGATTTTGTAGAACATTGTGATTGGGTCATTGTTGTAACAGCGCTGGAGAGTTTCCCTA-T-T-TAGGTCTACCAACATGTCAGTGACACTTCTAGCCCTTGTGTTGTCATGCTTGACAAAACA---AGCAGCCC-----TGGACCATCTTTAGTTGATTAATCAGGCAATCAGTGTGAGGGGAG-CATATAGTT-AACTTAAGG-AGTACATACGTTCTGTATATTTTCCACTTGGCTTTTGGTGAATATGATAC---TATGTTTCTCCTGATGAAG----T--TGGGGTTTGCCTTTTTGGTTGT
gi|20 : GGTGGAGGCTGGTTCCAGAAAACAATGGACACCGGATAGAAACTGTTC
gi|21 : ctTCTTCA--TCTCT----AGTAATCGT--ACCTGTCTTGAA---GAGTATTCT---CAAG-TGTGGctaaatgcagt
gi|22 : tcattCCAACCTGTCAGTGACATTGCTGGTCTTTGTTAAGTCATATTTGACAAAACat
gi|23 : TCAACATCA--TCTCT----AGTAATCGC--ATCCCCCTGGAA---AGATATTCT---CGCGATcaa
gi|24 : CCGGATAAAAACTATTCAGATATGCGGTTTTCTTTGCAGATAa
gi|3 : TCATCACCA--TCTCA----AGTAATCGC--AACACTCTGGAT---AAGAATTCT---CGTGATATTGTTAAAATAAT--GAGCACTAGCAGCTGTCAGATCCG-CACT-T-----T-ACAGATAAAAT----GTCCATTTTGCACA-----GTGATATCAAAAGATGTT-AAAA-CATAAACGGCGAAG-CTAGATGAAACCCAATCTCCCA--AGGTCCGGCTGGAACCT-TTCAAGAGAAGGCTGACGGACCACCTCAGGTGGAAGTCCGTTCCAGAGAACAATAG----CAGAT---AACTG----GACA-------------------AACTGG------TGA---TTGTGACACCTTGTGGAATATCGAGTTTGTCTAAGTGAAGGACTTG-----GTCTTGTGTCAATTAGGTTGTTGTAGATTGTGTAGAACATTGTGACCTGGGCATTGTTGCGACGGCACTGGATTGTTTCTC-A-C-TCTAGATCTACCAACATATCAGTGACACTGCTTGTCCTTGTGTAATCGTGCTTGATAAAGCA---AATTGCCTTACGTTGGACCATCTTTAGTTGTTCAACCAGG
gi|4 : aTCCTCATCA--TCTCT----AGTAACCGCGCATCCC-CTGGAA---GAGTATTCT---CAAGATGTGGTTAAAATACT--GAACACTCGCAGCAGTCAGATCAGAT-TT-T-----T-ACAAAT-AAAA---AGTTCACTTTGTACA-----GTGATAGTAAAAGAAGGT--AAAACATCAACGGTGAAA-CAAGATGGCACCTCGTCTCCCA--AGGGTCGTCTGGAACCC-TTC-AAGTTGGGCTGACTGACTCCCTCAGGCGGAGGCCCATTCCAGA-AATAATGGACGCCGGATAGTAG-TATTCAATTATGTGCTCGCATTTGCAGATAACTGGATAAACTGATGATTGTGTCTCCTTAT-AAATT-------------AGTGGAAGACTTGGTC--GTCTGGTGTCAACTAGGTTGTTGTATATTTTGTAGAACATTTTGTTCTAGGCATCGTTGCGACGGCGCTGGAGGGTTTAAA-A-CAT-TAGGTCTACCTACATGTCAGTGAT-CTGTTAGTCATTGT
gi|5 : AGT-TCCCATAAGGGTCGACTGGAACCT-ATCGAGGGTTAGTTGGCTGACTACCTCATGTGGTAG-------CTGAGAGCATTGGACGCTTGATAGAAGCTGTT-----------------TCGAA---AACTAAATAAATACATAAGTGTGCCCATTTGTGAAGTTTGCAGTTTGTCGAAGTGGAGAACTTG-----GTCTGATGTCAACCAGGTTGTTATAGATTTGGAAGAACATTGTGACACGGGTATCGTTGTGACGGCGCTG-AGGGTTTCCC-AAT-T-TAGATCCACGAACATTTCAGCGATACAACTGGCCCTTGTGTAGTCATGTTTGACAAATCG---AGCTGCCCTACGATTGAGT-TCTCTGATTGGCT------GCAGCCAGTGTG-GGGG-----TACCCTG-GTATT--GGTCGGACATA
gi|6 : CATCATCG--TCTCC----AGCTACCGC--ATCCCACTGGAA---GAGTATTCT---CGCGGTGTCGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-CATT-TAGGTAT-ACAAATAAAA-----GTTCAATTTGTACA-----GTGATATTTAAAGAAGGT-AAATATATAAACGGTGAAA-CTGAATCGCACCCAGTCTCCCG---GGGTCAACTGCAACCC-TCCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATGGTAGCTATTCAGATGTTCGCTTTTCTTTGCAGATAAAAGGACAAACTGATGCTTGTGCCCCATTGTGG---------------TATGAGGAGGACTTC-----GTCTAGTGTCAA
gi|7 : TCATCACCA--TCTCTTAGAAGTGATCAC--ATCCCTCTGGAA---GAGTATTCT---CATGATGTGGTTAAAATGCTTCAAGCACTTGCAGCAGTCATATCAGTT-TT-T-----T-ACAA--AAGAA---AGTTCACTTTGTACA-----GTGATAT----------C-AAAAACATCAACAGTGAAA-CTAGATGGCACTCAGTCTCCGA--ATGGGTAACTGGAACCC-TTTGAGGGTGGTCTGGCTGAGTATCTCACGTGAGAGTCTGTTCCAGATAACAATGGA
gi|8 : -----T-ACAGATAAAAAG--AGTTAATTTTGTAGA-----A-------GAAAGAAGGT-AAAAACATCAACGGTGAAAATTAGATGACACCAAGTCTCCCA--AAGGCTGACTACAACCC-TTCGGTGGTGGGCTGGATGACAACCTTAGATGGAAGGCAGTTCAAGAAAACAATGGACACTGGATTGAAGCTGTTCATATATGCGTTTTTCTTTGCAATTAACTGAATAAAGTGTTGAGTGTGCCCTCTTTTTGAATTTCTAGTTTGTCTAAGTGGGGGACATG-----GTCTGATGTCGACTAttaagtctgttaagtaacatgtcagtgatataagtc
gi|9 : CATCG--TCTCT----AGTAACCGC--ATCCCTCTACGA---GAGTACTCT---CGCGATGTGGTTAAAATACT--GAGCACCTGCAGC--------------TTGT-----T-ACAGATAATAA----GTTCAATTTGTACATATTTGTGATATTAAAAG---GT-AAAAATATCATTGGTTAGA-CTAGATGGCACCCAGTCTCACT--ACA-CCGACTGGAACCC-TTCCAGAGAGGCCTGACTGATTACCTC---------TACGTTCCAGAGAACAATTGACGCTGGATAATATCTGTTCAGATATACGCT
Alignments
lowQualScore : 222 11111 11111 11111 111 111 1 1111 11 11 222
lowQualScore : 44 66666 33 444 444 1 0 44 000 3 88888 6 1 99999 0 00000 0 1 4 4 0 55 11 4 0 0 1 2 2 0 2 0 1 1 1 00 88888 1 1 0 1 8 222 8 0 777 44 4 3 0 3 0 3 6666 1 11 22 33 6 0 3 333 999 6
lowQualScore : .. ..... .. ... ... . . .. ... . ..... . . ..... . ..... . . . . . .. .. . . . . . . . . . . . . .. ..... . . . . . ... . . ... .. . . . . . . .... . .. .. .. . . . ... ... .
lowQualScore : 22 11111 77 777 777 1 1 22 777 6 33333 7 2 99999 7 00000 9 4 0 0 5 00 77 0 1 7 7 0 2 1 8 5 7 9 8 88 99999 7 4 8 0 0 444 0 3 555 00 5 2 2 2 8 3 0000 2 00 22 88 5 7 7 333 333 7
consensus : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
Reference ( family-689 ) : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|1 : TCATCATCA--TCTCT----TGTAATCAC--ATCCCTCTGGAA---GAGTATTCT---CGAGAAGTGGTTAAAATACT--GAGCACTCGAAGCAGTCAAATCAG-C-TT-T-----T-ACAGATAAAAATTAAGTTATTTTTCTACA-----GTGATATTAAAAGAAGAT-AAAAACATCAACGGTGAAA-CTAGACGACACCCAGTCTTACA--AGGTTCGACTGGAACCT-TTCGAGGATGGGCTGGCTGACTAACTCAGGTGGAAGTCTGTTCTAGAGAGCAATGGACACCGGATAGCAACTGTTCAGAAATGCGCCTTTCTTCACAGATAGCTGGATAAACTGATGATTGTGCCCTCTTGTGAAAGTTCTAGTTTGTCTAAGTGGAGGACATG-----GTCTGGTGTCAACTAGATTGTTGTAGATTTTGTAGAACAGTGTGACCCGGACAGTGTTGCAACGGCGCTTG-GGGTTTTAC-A-C-T-TAGGTCTACCAACATGTCAGTAACACTGATAGTCCTTGGGTAGTCATGCTATACAAAACGAGCAGCTGCCCTGCGCTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGAGAACCATACTCTA-GGATT--GACCGGACATATGTGCGGTATGCTTTTGAATTTCATTCTGATGAGCATGATGCTAATATATTTCTGCTGATGAAGGATATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|10 : CATCTTCA--TCTTT----TGTAATCGC--ATCCCTCTAGGT---GAGTAGT-T---CGCGATGTGGTTAAAATACT--GAGCGCTCGCAGCAGTCAAATCAGAT-TT-T-----T-ACAGATAAAA
gi|10 : TGGCACCCAGTTTCATA--AGGGCCGTCTGggccatgcactttattaaaggcgtggcacccagtttcataagggccgtctgcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|11 : catcttcatcttttgtaatcgcatccctctaggtgagtagttcgcgatgtggttaaaatactgagcgctcgcagcagtcaaatcagatttttacagataaaaggccatgcactttattaaaggcgCATCATCA--TCTTT----AGTAATCGC--TTCCTCCAGGAA---GAGTATTCT---CACA--GTGGTTAAAATACT--GAGAGCTCGCAACAGTCAGATAAC-CTTT-T-----T-ACAGAC-AAAA---AGTTTATTTTGTACA-----GTGATAATAAAAGAAAAT-AAAAACATCAGCGGTGAAA-CTAGATGGCACTCcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|12 : AATCGC--ATCCCTTTAGAA---GAATATTCT---CATGGTGTAGT-AAAATACT--AAGCACTAATAGCAGTCAGA---------------------------------GTTCACTTTATACA-----GTAGCATTAAAAGTAGATTAAAAAT-TCAACAGTGAAA-CTAGATGGCACCAAGTCTCCCA--TGGGCCGACTGGAACCC-T
gi|13 : TGGGCGCCGAATAGTAGCTGATGAGATATGCGCTTTTCTTCGCAGATAACTGGGTGCACTGATAATTGTGCCCCCTTGTGGACTTTTTAGTTTGTCTAAGTGGAGGACTTT-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTG
gi|14 : GAAG-AATACTCTTTGATTT--GGCCAGACGTATGTGAGGTATGCTTTCAACTTGGCTTTTGATGAACCTGATGC---TATGTTTCTCCTGATGAAGGACATGGTAGAGTTTGCCATTTTGGTTATGTa
gi|15 : gttTATCTGGATTAACTGTTAGTTATGCCCTCTTGTGGAATTTCTTGTTTGTGTAAGTGAAGGACTTGACTTTGTCTGGTGTCAGCTAA---GTTGTAGATTTAATAGAAta
gi|16 : ATCATCAATTCGCT------TAATCGC--ATCCCTCTGTATTCTGAGTATTCT---CGCAATG--ATTAAAATACT--GAACACGCGCAGCATTCAGTTTGG-C-TT-T-----TAACAGGTAAAAgtccaagtctaacc
gi|17 : GTGGGCTGGTGGACTACATCATGTGGAAGCCAATTCCAGAGAACAATGTACGCCGGATAGAAACTGTTCAGATATA---TCTTCTTtt
gi|18 : gggtCTGT----AGTAATCGA--ATCCCTCTGGAA---GAGTATTCTCGACGCGATGTCATTAAAATACT--GAAAACTC
gi|19 : agtagttaacaccgatggcaTCACCATCA--CCTCT----TGTAATCGC--ATATCCCTAGAA---TAGTATTCA---CACGATGTGGTTAACATATC--CAGCATTCGCAGTAATCtg
gi|2 : gATCATCA--TCTTT----AGTTATCGC--ATCCCCTTGGAA---G--TAT-------------------AAATAAT--GAGCACTCGCAGCAGTCATTTCAA-C-TT-T-----TTACAGATAAAAC---ATTTT-TTTTGTACA-----GCGATGTTAAAATAAGAT-ATAAACATCAA---TGAAA-CCAGATGGCCTCCAGT------------------GAAACTCATTTGATAGTGGGCTGAC--ACTACCTCAGGTAGGGGTCCATTCCAGAGAACAGTGGACACCGAATAGTAACTGTTCAGATATGAGCTTTTCTTTGAAAATAACTGGATAAACTAATGATTGTGCCCCCTTGTGGAA-ATCTAGTTTGTCTAAGTGGAGGACTTG-----ATTTGTTGTCAACTAGATTGTTGTAGATTTTGTAGAACATTGTGATTGGGTCATTGTTGTAACAGCGCTGGAGAGTTTCCCTA-T-T-TAGGTCTACCAACATGTCAGTGACACTTCTAGCCCTTGTGTTGTCATGCTTGACAAAACA---AGCAGCCC-----TGGACCATCTTTAGTTGATTAATCAGGCAATCAGTGTGAGGGGAG-CATATAGTT-AACTTAAGG-AGTACATACGTTCTGTATATTTTCCACTTGGCTTTTGGTGAATATGATAC---TATGTTTCTCCTGATGAAG----T--TGGGGTTTGCCTTTTTGGTTGT
gi|20 : GGTGGAGGCTGGTTCCAGAAAACAATGGACACCGGATAGAAACTGTTC
gi|21 : ctTCTTCA--TCTCT----AGTAATCGT--ACCTGTCTTGAA---GAGTATTCT---CAAG-TGTGGctaaatgcagt
gi|22 : tcattCCAACCTGTCAGTGACATTGCTGGTCTTTGTTAAGTCATATTTGACAAAACat
gi|23 : TCAACATCA--TCTCT----AGTAATCGC--ATCCCCCTGGAA---AGATATTCT---CGCGATcaa
gi|24 : CCGGATAAAAACTATTCAGATATGCGGTTTTCTTTGCAGATAa
gi|3 : TCATCACCA--TCTCA----AGTAATCGC--AACACTCTGGAT---AAGAATTCT---CGTGATATTGTTAAAATAAT--GAGCACTAGCAGCTGTCAGATCCG-CACT-T-----T-ACAGATAAAAT----GTCCATTTTGCACA-----GTGATATCAAAAGATGTT-AAAA-CATAAACGGCGAAG-CTAGATGAAACCCAATCTCCCA--AGGTCCGGCTGGAACCT-TTCAAGAGAAGGCTGACGGACCACCTCAGGTGGAAGTCCGTTCCAGAGAACAATAG----CAGAT---AACTG----GACA-------------------AACTGG------TGA---TTGTGACACCTTGTGGAATATCGAGTTTGTCTAAGTGAAGGACTTG-----GTCTTGTGTCAATTAGGTTGTTGTAGATTGTGTAGAACATTGTGACCTGGGCATTGTTGCGACGGCACTGGATTGTTTCTC-A-C-TCTAGATCTACCAACATATCAGTGACACTGCTTGTCCTTGTGTAATCGTGCTTGATAAAGCA---AATTGCCTTACGTTGGACCATCTTTAGTTGTTCAACCAGG
gi|4 : aTCCTCATCA--TCTCT----AGTAACCGCGCATCCC-CTGGAA---GAGTATTCT---CAAGATGTGGTTAAAATACT--GAACACTCGCAGCAGTCAGATCAGAT-TT-T-----T-ACAAAT-AAAA---AGTTCACTTTGTACA-----GTGATAGTAAAAGAAGGT--AAAACATCAACGGTGAAA-CAAGATGGCACCTCGTCTCCCA--AGGGTCGTCTGGAACCC-TTC-AAGTTGGGCTGACTGACTCCCTCAGGCGGAGGCCCATTCCAGA-AATAATGGACGCCGGATAGTAG-TATTCAATTATGTGCTCGCATTTGCAGATAACTGGATAAACTGATGATTGTGTCTCCTTAT-AAATT-------------AGTGGAAGACTTGGTC--GTCTGGTGTCAACTAGGTTGTTGTATATTTTGTAGAACATTTTGTTCTAGGCATCGTTGCGACGGCGCTGGAGGGTTTAAA-A-CAT-TAGGTCTACCTACATGTCAGTGAT-CTGTTAGTCATTGT
gi|5 : AGT-TCCCATAAGGGTCGACTGGAACCT-ATCGAGGGTTAGTTGGCTGACTACCTCATGTGGTAG-------CTGAGAGCATTGGACGCTTGATAGAAGCTGTT-----------------TCGAA---AACTAAATAAATACATAAGTGTGCCCATTTGTGAAGTTTGCAGTTTGTCGAAGTGGAGAACTTG-----GTCTGATGTCAACCAGGTTGTTATAGATTTGGAAGAACATTGTGACACGGGTATCGTTGTGACGGCGCTG-AGGGTTTCCC-AAT-T-TAGATCCACGAACATTTCAGCGATACAACTGGCCCTTGTGTAGTCATGTTTGACAAATCG---AGCTGCCCTACGATTGAGT-TCTCTGATTGGCT------GCAGCCAGTGTG-GGGG-----TACCCTG-GTATT--GGTCGGACATA
gi|6 : CATCATCG--TCTCC----AGCTACCGC--ATCCCACTGGAA---GAGTATTCT---CGCGGTGTCGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-CATT-TAGGTAT-ACAAATAAAA-----GTTCAATTTGTACA-----GTGATATTTAAAGAAGGT-AAATATATAAACGGTGAAA-CTGAATCGCACCCAGTCTCCCG---GGGTCAACTGCAACCC-TCCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATGGTAGCTATTCAGATGTTCGCTTTTCTTTGCAGATAAAAGGACAAACTGATGCTTGTGCCCCATTGTGG---------------TATGAGGAGGACTTC-----GTCTAGTGTCAA
gi|7 : TCATCACCA--TCTCTTAGAAGTGATCAC--ATCCCTCTGGAA---GAGTATTCT---CATGATGTGGTTAAAATGCTTCAAGCACTTGCAGCAGTCATATCAGTT-TT-T-----T-ACAA--AAGAA---AGTTCACTTTGTACA-----GTGATAT----------C-AAAAACATCAACAGTGAAA-CTAGATGGCACTCAGTCTCCGA--ATGGGTAACTGGAACCC-TTTGAGGGTGGTCTGGCTGAGTATCTCACGTGAGAGTCTGTTCCAGATAACAATGGA
gi|8 : -----T-ACAGATAAAAAG--AGTTAATTTTGTAGA-----A-------GAAAGAAGGT-AAAAACATCAACGGTGAAAATTAGATGACACCAAGTCTCCCA--AAGGCTGACTACAACCC-TTCGGTGGTGGGCTGGATGACAACCTTAGATGGAAGGCAGTTCAAGAAAACAATGGACACTGGATTGAAGCTGTTCATATATGCGTTTTTCTTTGCAATTAACTGAATAAAGTGTTGAGTGTGCCCTCTTTTTGAATTTCTAGTTTGTCTAAGTGGGGGACATG-----GTCTGATGTCGACTAttaagtctgttaagtaacatgtcagtgatataagtc
gi|9 : CATCG--TCTCT----AGTAACCGC--ATCCCTCTACGA---GAGTACTCT---CGCGATGTGGTTAAAATACT--GAGCACCTGCAGC--------------TTGT-----T-ACAGATAATAA----GTTCAATTTGTACATATTTGTGATATTAAAAG---GT-AAAAATATCATTGGTTAGA-CTAGATGGCACCCAGTCTCACT--ACA-CCGACTGGAACCC-TTCCAGAGAGGCCTGACTGATTACCTC---------TACGTTCCAGAGAACAATTGACGCTGGATAATATCTGTTCAGATATACGCT
blockSeqs : AT TAGAA GC TCT CGA A TC AT G AGGTA A A AGA TATTT A T A TA GC A C A T C C G T ACTTT G G C T CA C . TA T A A A AGA T TT AT AA C A . GAC G
blockSeqs : . T . . . G . CT . . T A AA . A . . . GC . T C A A T A T GTC A T T . AT . . TA A A A . AGC A T AC . T C . . .
blockSeqs : . A . . . A . CA . . . A CA . A . . . TC . C G T C T G T . G T A . T . . . . . . . C G TA . .
blockSeqs : . A . . . A . AT . . . A AA . T . . . GT . T C A T T G T . G C C . C .
blockSeqs : . T . . . A . CA . . . A AA . G . . . GT . C C A C C G T . G
blockSeqs : . A . . . A . TT . . . A T . G . . . GT . T C T C T A T . .
blockSeqs : . A . . . A . C . . . A A . G . . . GG . T T A C T . . .
blockSeqs : . A . . . A . C . . . A . . G . . . GC . G A T . . . . .
blockSeqs : . A . . . G . . . . . . . . . . . . C . T C A .
blockSeqs : . A . . . A . . . . . . . . . . T .
blockSeqs : . A . . . A . . . . .
blockSeqs : . A . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : CT* AA***
originalCons : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAG-C-TT-T-----T-ACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
finalCons : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAGCT-TT-T-----T-ACAGATAAAAAA---GTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
Alignments
lowQualScore : 22222 11111 11111 111 111 1 1111 11 11 222
lowQualScore : 44 66666 33 444 444 1 0 44 0 88888 44444 0 00000 0 1 4 4 0 55 11 4 0 0 1 2 2 0 2 0 1 1 1 00 88888 1 1 0 1 8 222 8 0 777 44 4 3 0 3 0 3 6666 1 11 22 33 6 0 3 333 999 6
lowQualScore : .. ..... .. ... ... . . .. . ..... ..... . ..... . . . . . .. .. . . . . . . . . . . . . .. ..... . . . . . ... . . ... .. . . . . . . .... . .. .. .. . . . ... ... .
lowQualScore : 22 11111 77 777 777 1 1 22 5 33333 88888 7 00000 9 4 0 0 5 00 77 0 1 7 7 0 2 1 8 5 7 9 8 88 99999 7 4 8 0 0 444 0 3 555 00 5 2 2 2 8 3 0000 2 00 22 88 5 7 7 333 333 7
consensus : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAGCTTTT-----TACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
Reference ( family-689 ) : TCATCATCA--TCTCT----AGTAATCGC--ATCCCTCTGGAA---GAGTATTCT---CGCGATGTGGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAGCTTTT-----TACAGATAAAAA---AGTTCATTTTGTACA-----GTGATATTAAAAGAAGGT-AAAAACATCAACGGTGAAA-CTAGATGGCACCCAGTCTCCCA--AGGGCCGACTGGAACCC-TTCGAGGGTGGGCTGGCTGACTACCTCAGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAGCTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAAGTGGAGGACTTG-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTGTAGAACATTGTGACCCGGGCATCGTTGCGACGGCGCTGGAGGGTTTCNC-A-C-T-TAGGTCTACCAACATGTCAGTGACACTGCTAGTCCTTGTGTAGTCATGCTTGACAAAACG---AGCTGCCCTACGNTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGAG-CATACTCTN-GANTT--GGCCGGACATACGTGCGGTATGCTTTCGACTTGGCTTTTGATGAACATGATGC---TATGTTTCTCCTGATGAAGGACATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|1 : TCATCATCA--TCTCT----TGTAATCAC--ATCCCTCTGGAA---GAGTATTCT---CGAGAAGTGGTTAAAATACT--GAGCACTCGAAGCAGTCAAATCAGCTTTT------ACAGATAAAAATTAAGTTATTTTTCTACA-----GTGATATTAAAAGAAGAT-AAAAACATCAACGGTGAAA-CTAGACGACACCCAGTCTTACA--AGGTTCGACTGGAACCT-TTCGAGGATGGGCTGGCTGACTAACTCAGGTGGAAGTCTGTTCTAGAGAGCAATGGACACCGGATAGCAACTGTTCAGAAATGCGCCTTTCTTCACAGATAGCTGGATAAACTGATGATTGTGCCCTCTTGTGAAAGTTCTAGTTTGTCTAAGTGGAGGACATG-----GTCTGGTGTCAACTAGATTGTTGTAGATTTTGTAGAACAGTGTGACCCGGACAGTGTTGCAACGGCGCTTG-GGGTTTTAC-A-C-T-TAGGTCTACCAACATGTCAGTAACACTGATAGTCCTTGGGTAGTCATGCTATACAAAACGAGCAGCTGCCCTGCGCTGGACCATCTCTAGTTGGTTAATCAGGCAGTCAGTGTG-GGAGAACCATACTCTA-GGATT--GACCGGACATATGTGCGGTATGCTTTTGAATTTCATTCTGATGAGCATGATGCTAATATATTTCTGCTGATGAAGGATATGGTGGAGTTTGCCTTTTTGGTTGTGT
gi|10 : CATCTTCA--TCTTT----TGTAATCGC--ATCCCTCTAGGT---GAGTAGT-T---CGCGATGTGGTTAAAATACT--GAGCGCTCGCAGCAGTCAAATCAGATTTT-----TACAGATAAAA
gi|10 : TGGCACCCAGTTTCATA--AGGGCCGTCTGggccatgcactttattaaaggcgtggcacccagtttcataagggccgtctgcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|11 : catcttcatcttttgtaatcgcatccctctaggtgagtagttcgcgatgtggttaaaatactgagcgctcgcagcagtcaaatcagatttttacagataaaaggccatgcactttattaaaggcgCATCATCA--TCTTT----AGTAATCGC--TTCCTCCAGGAA---GAGTATTCT---CACA--GTGGTTAAAATACT--GAGAGCTCGCAACAGTCAGATAACCTTTT-----TACAGACAAAAA----GTTTATTTTGTACA-----GTGATAATAAAAGAAAAT-AAAAACATCAGCGGTGAAA-CTAGATGGCACTCcccctagtcagtgacttaaataatcacatgtctcttctctggcggaggctggttcc
gi|12 : AATCGC--ATCCCTTTAGAA---GAATATTCT---CATGGTGTAGT-AAAATACT--AAGCACTAATAGCAGTCAGA------------------------------GTTCACTTTATACA-----GTAGCATTAAAAGTAGATTAAAAAT-TCAACAGTGAAA-CTAGATGGCACCAAGTCTCCCA--TGGGCCGACTGGAACCC-T
gi|13 : TGGGCGCCGAATAGTAGCTGATGAGATATGCGCTTTTCTTCGCAGATAACTGGGTGCACTGATAATTGTGCCCCCTTGTGGACTTTTTAGTTTGTCTAAGTGGAGGACTTT-----GTCTGGTGTCAACTAGGTTGTTGTAGATTTTG
gi|14 : GAAG-AATACTCTTTGATTT--GGCCAGACGTATGTGAGGTATGCTTTCAACTTGGCTTTTGATGAACCTGATGC---TATGTTTCTCCTGATGAAGGACATGGTAGAGTTTGCCATTTTGGTTATGTa
gi|15 : gttTATCTGGATTAACTGTTAGTTATGCCCTCTTGTGGAATTTCTTGTTTGTGTAAGTGAAGGACTTGACTTTGTCTGGTGTCAGCTAA---GTTGTAGATTTAATAGAAta
gi|16 : ATCATCAATTCGCT------TAATCGC--ATCCCTCTGTATTCTGAGTATTCT---CGCAATG--ATTAAAATACT--GAACACGCGCAGCATTCAGTTTGGCTTTT-----AACAGGTAAAAgtccaagtctaacc
gi|17 : GTGGGCTGGTGGACTACATCATGTGGAAGCCAATTCCAGAGAACAATGTACGCCGGATAGAAACTGTTCAGATATA---TCTTCTTtt
gi|18 : gggtCTGT----AGTAATCGA--ATCCCTCTGGAA---GAGTATTCTCGACGCGATGTCATTAAAATACT--GAAAACTC
gi|19 : agtagttaacaccgatggcaTCACCATCA--CCTCT----TGTAATCGC--ATATCCCTAGAA---TAGTATTCA---CACGATGTGGTTAACATATC--CAGCATTCGCAGTAATCtg
gi|2 : gATCATCA--TCTTT----AGTTATCGC--ATCCCCTTGGAA---G--TAT-------------------AAATAAT--GAGCACTCGCAGCAGTCATTTCAACTTTT-----TACAGATAAAAC---ATTTT-TTTTGTACA-----GCGATGTTAAAATAAGAT-ATAAACATCAA---TGAAA-CCAGATGGCCTCCAGT------------------GAAACTCATTTGATAGTGGGCTGAC--ACTACCTCAGGTAGGGGTCCATTCCAGAGAACAGTGGACACCGAATAGTAACTGTTCAGATATGAGCTTTTCTTTGAAAATAACTGGATAAACTAATGATTGTGCCCCCTTGTGGAA-ATCTAGTTTGTCTAAGTGGAGGACTTG-----ATTTGTTGTCAACTAGATTGTTGTAGATTTTGTAGAACATTGTGATTGGGTCATTGTTGTAACAGCGCTGGAGAGTTTCCCTA-T-T-TAGGTCTACCAACATGTCAGTGACACTTCTAGCCCTTGTGTTGTCATGCTTGACAAAACA---AGCAGCCC-----TGGACCATCTTTAGTTGATTAATCAGGCAATCAGTGTGAGGGGAG-CATATAGTT-AACTTAAGG-AGTACATACGTTCTGTATATTTTCCACTTGGCTTTTGGTGAATATGATAC---TATGTTTCTCCTGATGAAG----T--TGGGGTTTGCCTTTTTGGTTGT
gi|20 : GGTGGAGGCTGGTTCCAGAAAACAATGGACACCGGATAGAAACTGTTC
gi|21 : ctTCTTCA--TCTCT----AGTAATCGT--ACCTGTCTTGAA---GAGTATTCT---CAAG-TGTGGctaaatgcagt
gi|22 : tcattCCAACCTGTCAGTGACATTGCTGGTCTTTGTTAAGTCATATTTGACAAAACat
gi|23 : TCAACATCA--TCTCT----AGTAATCGC--ATCCCCCTGGAA---AGATATTCT---CGCGATcaa
gi|24 : CCGGATAAAAACTATTCAGATATGCGGTTTTCTTTGCAGATAa
gi|3 : TCATCACCA--TCTCA----AGTAATCGC--AACACTCTGGAT---AAGAATTCT---CGTGATATTGTTAAAATAAT--GAGCACTAGCAGCTGTCAGATCCGCACTT-----TACAGATAAAAT----GTCCATTTTGCACA-----GTGATATCAAAAGATGTT-AAAA-CATAAACGGCGAAG-CTAGATGAAACCCAATCTCCCA--AGGTCCGGCTGGAACCT-TTCAAGAGAAGGCTGACGGACCACCTCAGGTGGAAGTCCGTTCCAGAGAACAATAG----CAGAT---AACTG----GACA-------------------AACTGG------TGA---TTGTGACACCTTGTGGAATATCGAGTTTGTCTAAGTGAAGGACTTG-----GTCTTGTGTCAATTAGGTTGTTGTAGATTGTGTAGAACATTGTGACCTGGGCATTGTTGCGACGGCACTGGATTGTTTCTC-A-C-TCTAGATCTACCAACATATCAGTGACACTGCTTGTCCTTGTGTAATCGTGCTTGATAAAGCA---AATTGCCTTACGTTGGACCATCTTTAGTTGTTCAACCAGG
gi|4 : aTCCTCATCA--TCTCT----AGTAACCGCGCATCCC-CTGGAA---GAGTATTCT---CAAGATGTGGTTAAAATACT--GAACACTCGCAGCAGTCAGATCAGATTTT-----TACAAAT-AAAA---AGTTCACTTTGTACA-----GTGATAGTAAAAGAAGGT--AAAACATCAACGGTGAAA-CAAGATGGCACCTCGTCTCCCA--AGGGTCGTCTGGAACCC-TTC-AAGTTGGGCTGACTGACTCCCTCAGGCGGAGGCCCATTCCAGA-AATAATGGACGCCGGATAGTAG-TATTCAATTATGTGCTCGCATTTGCAGATAACTGGATAAACTGATGATTGTGTCTCCTTAT-AAATT-------------AGTGGAAGACTTGGTC--GTCTGGTGTCAACTAGGTTGTTGTATATTTTGTAGAACATTTTGTTCTAGGCATCGTTGCGACGGCGCTGGAGGGTTTAAA-A-CAT-TAGGTCTACCTACATGTCAGTGAT-CTGTTAGTCATTGT
gi|5 : AGT-TCCCATAAGGGTCGACTGGAACCT-ATCGAGGGTTAGTTGGCTGACTACCTCATGTGGTAG-------CTGAGAGCATTGGACGCTTGATAGAAGCTGTT-----------------TCGAA---AACTAAATAAATACATAAGTGTGCCCATTTGTGAAGTTTGCAGTTTGTCGAAGTGGAGAACTTG-----GTCTGATGTCAACCAGGTTGTTATAGATTTGGAAGAACATTGTGACACGGGTATCGTTGTGACGGCGCTG-AGGGTTTCCC-AAT-T-TAGATCCACGAACATTTCAGCGATACAACTGGCCCTTGTGTAGTCATGTTTGACAAATCG---AGCTGCCCTACGATTGAGT-TCTCTGATTGGCT------GCAGCCAGTGTG-GGGG-----TACCCTG-GTATT--GGTCGGACATA
gi|6 : CATCATCG--TCTCC----AGCTACCGC--ATCCCACTGGAA---GAGTATTCT---CGCGGTGTCGTTAAAATACT--GAGCACTCGCAGCAGTCAGATCAGCATTTAGGTATACAAATAAAA-----GTTCAATTTGTACA-----GTGATATTTAAAGAAGGT-AAATATATAAACGGTGAAA-CTGAATCGCACCCAGTCTCCCG---GGGTCAACTGCAACCC-TCCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATGGTAGCTATTCAGATGTTCGCTTTTCTTTGCAGATAAAAGGACAAACTGATGCTTGTGCCCCATTGTGG---------------TATGAGGAGGACTTC-----GTCTAGTGTCAA
gi|7 : TCATCACCA--TCTCTTAGAAGTGATCAC--ATCCCTCTGGAA---GAGTATTCT---CATGATGTGGTTAAAATGCTTCAAGCACTTGCAGCAGTCATATCAGTTTTT-----TACAA--AAGAA---AGTTCACTTTGTACA-----GTGATAT----------C-AAAAACATCAACAGTGAAA-CTAGATGGCACTCAGTCTCCGA--ATGGGTAACTGGAACCC-TTTGAGGGTGGTCTGGCTGAGTATCTCACGTGAGAGTCTGTTCCAGATAACAATGGA
gi|8 : -----TACAGATAAAAAG--AGTTAATTTTGTAGA-----A-------GAAAGAAGGT-AAAAACATCAACGGTGAAAATTAGATGACACCAAGTCTCCCA--AAGGCTGACTACAACCC-TTCGGTGGTGGGCTGGATGACAACCTTAGATGGAAGGCAGTTCAAGAAAACAATGGACACTGGATTGAAGCTGTTCATATATGCGTTTTTCTTTGCAATTAACTGAATAAAGTGTTGAGTGTGCCCTCTTTTTGAATTTCTAGTTTGTCTAAGTGGGGGACATG-----GTCTGATGTCGACTAttaagtctgttaagtaacatgtcagtgatataagtc
gi|9 : CATCG--TCTCT----AGTAACCGC--ATCCCTCTACGA---GAGTACTCT---CGCGATGTGGTTAAAATACT--GAGCACCTGCAGC------------TTGT-----TACAGATAATAA----GTTCAATTTGTACATATTTGTGATATTAAAAG---GT-AAAAATATCATTGGTTAGA-CTAGATGGCACCCAGTCTCACT--ACA-CCGACTGGAACCC-TTCCAGAGAGGCCTGACTGATTACCTC---------TACGTTCCAGAGAACAATTGACGCTGGATAATATCTGTTCAGATATACGCT