lowQualScore : 1111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1111 1 1 1 777 9999999999999 33333 1 1 1 1 222222 1 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111 33333333333 999999999999999999999999999999999999999 1111 111 1111111 1111 2222222 44444444444 55555555555555555 444 22222 1 1 1 33333
lowQualScore : 9999 7777 5 5 5 6 000 6 7777777777777 6 33333 5 6 6 5 3 5 000000 0 0 22 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 999999 6 66666666666 3 222222222222222222222222222222222222222 0000 6 222 0 8888888 7 1 3 2222 44 1 3333333 3 0 99 44444444444 33333333333333333 8 6 3 000 00000 5 5 7 44444 6
lowQualScore : .... .... . . . . ... . ............. . ..... . . . . . . ...... . . .. ............................................................................................................................................................................................. . ...... . ........... . ....................................... .... . ... . ....... . . . .... .. . ....... . . .. ........... ................. . . . ... ..... . . . ..... .
lowQualScore : 0000 0000 0 0 0 0 000 0 0000000000000 0 00000 0 0 0 0 3 0 888888 8 0 88 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 222222 7 55555555555 1 333333333333333333333333333333333333333 6666 0 999 7 6666666 6 7 9 1111 00 0 5555555 0 2 00 00000000000 00000000000000000 3 7 7 333 33333 0 0 0 00000 0
consensus : TATTTAGTCCATTGACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCGTGTCGCTTAAATCTCTACAAATTCAGACGNATACATATCAAGG-AATCTG---ATCA-T--CATTCCCGTCTTTTNTCTTAA-------AATAAAAGANAGG-TAAATGTATATTTAAACCCGCCGAT-GGGATGCCGA-TACAAATGTAAGCCGT-----NCGNCATTA-TTCTCC-T--C-CAGTCAGTCGCGTNCTTTCTTCATGTCATA--NTTTGTTTNNT--TTAGC-ATTTTTATTCATGT------C-TTC-AA-----TAGCGTATGGTGTCAGTGGGC----ATATCG----------TCAACA---A-CAA--GCNTTCTC----TTCGGTAATATA-TGGTCT------NAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGNATCTGCCATTTTAACC-----G-----TCGCTGC-CT-CC-GTTGTCGT-GGATGCTCGCG--CAAAT--AACGAATTAACTGATTTCGGGTATTTTT
Reference ( gi|1 ) : TATTTAGTCAGTAGAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG-----AT------GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGA-AATCTGTAAATCA-A--CATTCCTATAGTGCATCATAA-------AATAAAAGAAAGAGCAAATGTACATTTAAACCTGCCGAT-GGGAGGCTGA-TACAAATGCAAGCCGT-----ACACCATTA-TTCTCCTTGAC-CAGTCAGTTGCGTTTTTTTTTCATGTCATA--GTTCATTTAATTATTAGC-ACTATTATTCATGT------C-TTC-AA-----TATTGTATGGTGCCAGTGGGC----CTATCGA-------AATCAA-A---A-CAA--GCTTTCTT----TTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTTTT-GTTGTCATTAGTTGCTCGCGATTAAAT--AA-GACTTCACTGTTTTTAGTAATTCTTCA
gi|2 : TATTTAGTCCATTGACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAGACCATTT-----TCA-T--CTATGCTGT--TGAATGTGAG-------AACAAAA-ACCGGATAAATATATATTTGAACCCGCCAAT-AG-----TGA-T--GAGT-C-AGTCGA-----GTGCT-----TTCTTCATGTCACAATCAATT-TGTTTT--------------------ATTT-----TTAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----AAGTGTAGAGTGTTAGTGCGC----AAATCAATGTGCATAAACAATA---A-CAA--AGTTTCTC----TTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--T
gi|6 : aagttctatatactttttcaatatgataccatcgactttaaTCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGC-AATCTG---ATCATAGTCATTCCCATCTTTTTTCCT-A-------ATTATGAGAAAA---AAATGTAT-CTTAAAACTGTCAA--GTGATGCCAAGTTCAAGTGC-AGTCGT-----CCGACGTTG-TTCTC-----C-CAGAGAGTTGCATGTTTT
gi|3 : TCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATG-ATTCTGACTATTA-T--CATTCCCATCTTTTCTCTTAATTATGAGGATAAAAACTAGA-TAAATGCGT-TTTAATCCTGCTGATTGGGATGCCAA-GA--AATG-AAGCCAT-----CCAACATTAATTCTCCCT--------------------TTCTTCATGTCAT---GTT--TTTAG-----AAT-ACG--TATTGGTAT------C-TTC-AAAGATCTATCGTTTGGTATGGGTGGGT----TAAACG----------TTAACA---A-CAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|15 : CTTCACAAATCCAGGCTTATACATATCAAGG-AATCTG---ATCA-tactgt
gi|14 : tttcacttatgtTTTACAAACTCAGACAGA-GCATATGAAGG-AATCtaattgttcccatcttt
gi|13 : gtgttgacaatgagtcgtttAAATGTGTATTCAAACCCGCCGAA-GGAATACAAC-TACAAATGTA-GCCGT-----CCAACATTA-CTCTCC------CAGTCAGTCGCGTACTTTCTTTATGTCCTA--TTTTGTTTctttcattattatttcaat
gi|9 : atAAATGTAAATTTAAATCCGCCGAT-TAGA---TGA-C----ATGT-AGCCATTAAAGACAT--TTA-CTCTCACTG-C-CAGTC----GCATAATTTCTTCAGGTCATATGGTGTGTTTGTTTA-TAAC-ATTTGTATTCATGT------CATCC-AA-----AATCATATGGAGGTATTGGGCAAAATTATCGtt
gi|7 : aCAAATGTG-GCTGT-----ACAGCAATT-TTCTCC------CAGTCAGTCGCATTCTTTCTTCATGTCATA--TTTTGTTTTATGTTTCGC-CTCTTTATTTATGT------C-ATCAAA-----TAGTGTATGGTGTCAGTAGGT----CTG---------------------------------TCTC----TACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----GTGA
gi|4 : gTTAGT-ATT-TTGTTAATGT------C-TTT-------------TATGGTGTCAGTGGGT----ATACCG----------TCAA-ACGCATCAA--GACTTCTT----TTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-ATTGCAGTTGTCGTTGGAT-CTTGCG--CAAAT--A
gi|5 : ttaattctttcgttacgatcttttgttTTGTTCATGT------C-TTC-AAA----TAGTATATGGTGCCAGTGGGC----ATATTG----------TCAA-C---G-TAATCGCCTT-TT----TCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTATC-TAATCGTCTAG-----TCGCTGCACTGCT-TTTGTCGTGGGATGCTCGTG--CAAAC--AA-tacaaattgg
gi|17 : TGTATGGTGTCAGTGGGC----ATACTG----------TCAG-C---A-CTA--AC--CCTT----TTCacgaattggct
gi|8 : tagtcacttttttccgaaagTGCCAGTGGGC----ATATCGA-------GAACAACA---A-CAA--GCATTCTC----TTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C--CT-GTT-T-----GTTGCTCGAGAATAAATTGAACGAATTAACTGATTTCGGGTATTTTTcggt
gi|16 : CAACA---A-CAC--GCTTTCTC----TTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TAAAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAGATCATTCTTACCTTTTCTCTCAAAAACCTGGATAAATGCGTATTTAAACTCGCCGACAGAATGTCAAGAACATATGCAGCTGTCTGAC
Unaligned ( gi|11 ): TGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAATCATTTCCATTTTAATTCTTAATTATAATGGGGAAAACCTGGATAAATTAAACGCGTCGACGGGATACCAAGTAC
Unaligned ( gi|12 ): AGTTCTTTTTAATTTTTTCTATTGAATTTAATTTTCGACTTCATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGACAGAAGCAATATTTCTCCTCAAT
Alignments
lowQualScore : 33333 333 333333333 11 222 4444444444444444444444444444444 333333 222 3333333 222222222 33333333 111111 222222222 222222222222222222222222 1111111 1111 11111 33333333333 44444444 2222 22 2222
lowQualScore : 33333 1 4 555 999999999 77 3 3 3 0 22 0 22 4 666 999999999 6 22 7777777777777777777777777777777 66 88 99 5 111111 333 888 1 7777 9999999 0 0 2 111111111 77777777 6 444444 5 444444444 55 888888888888888888888888 7777 0 999 1 9999 1 888 5555555 0 2 0000 11111 0 0 0 33333333333 55555555 3 7777 3 2 0 77 4444 2 4 4 66
lowQualScore : ..... . . ... ......... .. . . . . .. . .. . ... ......... . .. ............................... .. .. .. . ...... ... ... . .... ....... . . . ......... ........ . ...... . ......... .. ........................ .... . ... . .... . ... ....... . . .... ..... . . . ........... ........ . .... . . . .. .... . . . ..
lowQualScore : 00000 0 0 000 000000000 55 0 0 0 7 00 4 11 5 222 000000000 0 88 1111111111111111111111111111111 99 22 11 0 777777 666 999 0 5555 8888888 3 4 8 000000000 00000000 7 444444 0 222222222 66 666666666666666666666666 9999 9 000 0 4444 7 999 4444444 4 2 6666 55555 6 6 8 22222222222 55555555 2 5555 5 5 2 55 8888 5 0 0 55
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-------AA-------AATAAAAGCNAG-ATAAA--TGTAT-ATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGT--CCGACA-TT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGTTT----TT--TAGC-ATTTTTATTCATGT------C-TTC-AA-----NAGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTT-GGATGCTCGCGA-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCGTGTCGCTTAAATCTCTACAAATTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCGTCTTTTNTCTT-------AA-------AATAAAAGANAG-GTAAA--TGTAT-ATTTAAACCCGCCGA-TGG-GATGCC--GA-TACAAATGTAAGCCGT--NCGNCA-TT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGTTT--NNTT--TAGC-ATTTTTATTCATGT------C-TTC-AA-----TAGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCNTTCT----CTTCGGTAATATA-TGGTCT------NAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGNATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CCGTTGTCG-T-GGATGCTCGCG--CAAAT--A-ACGAATTAACTGATTTCGGGTATTTTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAATCA---ACA---TTCCTATAGTGCATCAT-------AA-------AATAAAAGAAAGAGCAAA--TGTAC-ATTTAAACCTGCCGA-TGG-GAGGCT--GA-TACAAATGCAAGCCGT--ACACCA-TT-ATTCTC-CTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCA----TA--GTTCATTT--AATTATTAGC-ACTATTATTCATGT------C-TTC-AA-----TATTGTATGGTGCCAGTGGGCC----TATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATT-AGTTGCTCGCGATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG---ATCA---T------TCTTACCTTTTCTCTC-------AA-------AA----ACCTGG-ATAAA--TGCGT-ATTTAAACTCGCCGA-CAG-AATGTCAAGA--ACATATGC-AGCTGT--CTGACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAA---TCA---TTTCCATTTTAATTCTT-------AAT------TATAATGG---G-GAAAACCTGGATAAATTAAACGCGTCGA-CGG-GATACC--AAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcTAAA--TGTGT-ATTCAAACCCGCCGA-AGG-AATACA--AC-TACAAATGTA-GCCGT--CCAACA-TT-ACTCTC-C-----CAGTCAGTCGCGTACTTTCTTTATGTCC----TA--TTTTGTTT--cagaagcaatatttctcctcaat
gi|14 : aGTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---TTCA---TTA---TTtt
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---ATCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GA-----AAGTGTATGGTGTCAGTGGGCA----TACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG-------------A---CCA---TTTTCATCTATGCTGTTGAATGTGAG-------AACAAAAACCGG-ATAAA--TATAT-ATTTGAACCCGCCAA-TAGTGATG
gi|2 : aagttctatatactttttcaatatgataccatcgactttaaAGTCAGTCGAGTGCTTTCTTCATGTCACAATCA--ATTTGTTTTATTTT--TAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----AAGTGTAGAGTGTTAGTGCGCA----AATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--Tagtcagtcgagtgctttcttcatgtcacaatcaatttgttttatttttagcaatttttattcatgtctcagacttcaaaaagtgtagagtgttagtgcgcaaatcaatgtgcataaacaataacaaagtttctcttcggtaaaataaagtgttacaacatgaaattgttgtcagaaagtggt
gi|3 : aagttctatatactttttcaatatgataccatcgactttaatatttagtccattgacctgattgatttaggagttgtcgttaagaatcaatgagtgtttacatttatcggtcaaaactcttgcatattacctcatgtcgcttcaatctcttcaagttcagatgaataaatatcaagaccattttcatctatgctgttgaatgtgagaacaaaaaccggataaatatatatttgaacccgccaatagtgatgTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTGACTATTA---TCA---TTCCCATCTTTTCTCTT-------AATTATGAGGATAAAAACTAG-ATAAA--TGCGT--TTTAATCCTGCTGATTGG-GATGCC--A---AGAAATG-AAGCCAT--CCAACA-TTAATTCTC-C-------------------CTTTCTTCATGTCA-----------TGTT-----TT--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCTATCGTTTGGTATGGGTGGGTT----AAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--A----TC--TTTTGTTT--------TAGT-ATTTT-GTTAATGT------C-TTT-------------TATGGTGTCAGTGGGTA----TACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTT-GGAT-CTTGCG--CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AAA----TAGTATATGGTGCCAGTGGGCA----TATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCG-TGGGATGCTCGTG--CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---ATCATAGTCA---TTCCCATCTTTTTTCCT--------A-------ATTATGAGAAAA---AAA--TGTAT--CTTAAAACTGTCAA--GT-GATGCC--AAGTTCAAGTGC-AGTCGT--CCGACG-TT-GTTCTC------CCAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGT--ACAGCA----ATTTTC-TC---CCAGTCAGTCGCATTCTTTCTTCATGTCA----TA--TTTTGTTTTATGTT--TCGC-CTCTTTATTTATGT------C-ATCAAA-----TAGTGTATGGTGTCAGTAGGT---------------------------------------CTGTCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCA----TATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTG-T----TGCTCGAGAATAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAA--TGTAA-ATTTAAATCCGCCGA-TTA-GATG--------AC--ATGT-AGCCATTAAAGACATTT-ACTCTCACT------GCCAGTCGCATAATTTCTTCAGGTCA----TATGGTGTGTTT--GTTTA-TAAC-ATTTGTATTCATGT------CATCC-AA-----AATCATATGGAGGTATTGGGCAAAATTATC---G---
Alignments
lowQualScore : 33333 222 333333333 11 2222 66666666666666666666666 11 333333 222 3333333 111111111 1111 333333333 111111 2222222222 222222222222222222222222 1111111 1111 11111 33333333333 444444 333 2222
lowQualScore : 0 22222 1 111 999999999 77 2 1 1 0 22 22 4 9999 1 888 888 1 66666666666666666666666 999 5 6 22 5 111111 333 77 7777 9999999 0 0 2 666666666 2222 000000000 6 444444 5 3333333333 55 888888888888888888888888 7777 0 999 2 9999 1 888 5555555 0 2 0000 00000 0 0 0 33333333333 333333 3 99 3 2 0 555 4444 2 1 1 22
lowQualScore : . ..... . ... ......... .. . . . . .. .. . .... . ... ... . ....................... ... . . .. . ...... ... .. .... ....... . . . ......... .... ......... . ...... . .......... .. ........................ .... . ... . .... . ... ....... . . .... ..... . . . ........... ...... . .. . . . ... .... . . . ..
lowQualScore : 7 00000 0 555 000000000 55 5 0 0 7 00 11 5 6666 4 888 888 0 88888888888888888888888 555 7 2 44 0 777777 111 99 5555 8888888 3 4 8 333333333 1111 444444444 7 444444 0 2222222222 66 666666666666666666666666 9999 9 000 7 4444 7 999 1111111 4 2 6666 99999 6 6 8 22222222222 222222 2 55 5 5 2 555 8888 5 0 0 00
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-------AA-------AAT----AAAANCCGGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTC--CGACA-TT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-------AA-------AAT----AAAAGCNAGA-TAAATGTATATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTC--CGACA-TT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAATCA---ACA---TTCCTATAGTGCATCAT-------AA-------AAT----AAAAGAAAGAGCAAATGTACATTTAAACCTGCCGA-TGG-GAGGCT--GA-TACAAATGCAAGCCGTA--CACCA-TT-ATTCTC-CTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCA----TA--GTTCAT----TTAAT-TAT--TAGC-ACTATTATTCATGT------C-TTC-AA-----T-ATTGTATGGTGCCAGTGGGCC----TATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATTAGTTGCTCGCG-ATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG------A---TCA---TTCTTACCTTTTCTCTC-------A---------------AAAACCTGGA-TAAATGCGTATTTAAACTCGCCGA-CAG-AATGTCAAGA--ACATATGC-AGCTGTC--TGACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAA---TCA---TTTCCATTTTAATTCTT-------AATTAT---AATGGGGAAAACCTGGA-TAAA-------TTAAACGCGTCGA-CGG-GATACC--AAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcA-TAAATGTGTATTCAAACCCGCCGA-AGG-AATACA--AC-TACAAATGTA-GCCGTC--CAACA-TT-ACTCTC-C-----CAGTCAGTCGCGTACTTTCTTTATGTCC----TA--TTTTGT----TT----T-T--cagaagcaatatttctcctcaat
gi|14 : GTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---TTCA---TTA---TT
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---ATCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GA-----A-AGTGTATGGTGTCAGTGGGCA----TACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG-------------A---CCA---TTTTCATCTATGCTGTTGAATGTGAG-------AAC----AAAAACCGGA-TAAATATATATTTGAACCCGCCAA-TAGTGATG
gi|2 : aagttctatatactttttcaatatgataccatcgactttaaAGTCAGTCGAGTGCTTTCTTCATGTCACAATCA--ATTTGTTTTATT----T-T--TAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----A-AGTGTAGAGTGTTAGTGCGCA----AATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--Tagtcagtcgagtgctttcttcatgtcacaatcaatttgttttatttttagcaatttttattcatgtctcagacttcaaaaagtgtagagtgttagtgcgcaaatcaatgtgcataaacaataacaaagtttctcttcggtaaaataaagtgttacaacatgaaattgttgtcagaaagtggt
gi|3 : aagttctatatactttttcaatatgataccatcgactttaatatttagtccattgacctgattgatttaggagttgtcgttaagaatcaatgagtgtttacatttatcggtcaaaactcttgcatattacctcatgtcgcttcaatctcttcaagttcagatgaataaatatcaagaccattttcatctatgctgttgaatgtgagaacaaaaaccggataaatatatatttgaacccgccaatagtgatgTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTGACTATTA---TCA---TTCCCATCTTTTCTCTT-------AATTATGAGGAT----AAAAACTAGA-TAAATGCGT-TTTAATCCTGCTGATTGG-GATGCC--A---AGAAATG-AAGCCATC--CAACA-TTAATTCTC-C-------------------CTTTCTTCATGTCA----TG------------TT----T-T--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCT-ATCGTTTGGTATGGGTGGGTT----AAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--A----TC--TTTTGT----TT----T-----AGT-ATTTT-GTTAATGT------C-TTT--------------TATGGTGTCAGTGGGTA----TACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTTGGAT-CTTGCG---CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AA-----ATAGTATATGGTGCCAGTGGGCA----TATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCGTGGGATGCTCGTG---CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---ATCATAGTCA---TTCCCATCTTTTTTCCT--------A-------ATT----ATGAG--AAA-AAAATGTAT-CTTAAAACTGTCAA--GT-GATGCC--AAGTTCAAGTGC-AGTCGTC--CGACG-TT-GTTCTC------CCAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGTA--CAGCA----ATTTTC-TC---CCAGTCAGTCGCATTCTTTCTTCATGTCA----TA--TTTTGT----TTTATGT-T--TCGC-CTCTTTATTTATGT------C-ATCAAA-----T-AGTGTATGGTGTCAGTAGGT---------------------------------------CTGTCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCA----TATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTGT----TGCTCGAGAA-TAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAATGTAAATTTAAATCCGCCGA-TTA-GATG--------AC--ATGT-AGCCATTAAAGACATTT-ACTCTCACT------GCCAGTCGCATAATTTCTTCAGGTCA----TATGGTGTGT----TTG---T-TTATAAC-ATTTGTATTCATGT------CATCC-AA-----A-ATCATATGGAGGTATTGGGCAAAATTATC---G---
Alignments
lowQualScore : 33333 222 333333333 11 2222 66666666666666666666666 11 333333 222 1 3333333 111111111 1111 333333333 111111 2222222222 222222222222222222222222 1111111 1111 11111 33333333333 444444 333 2222
lowQualScore : 0 22222 1 111 999999999 77 2 1 1 0 22 22 4 9999 1 888 888 1 55555555555555555555555 999 5 666 22 5 111111 1 333 77 3 9999999 0 0 2 666666666 2222 000000000 6 444444 5 3333333333 55 888888888888888888888888 7777 0 999 2 9999 1 888 5555555 0 2 0000 00000 0 0 0 33333333333 333333 3 99 3 2 0 555 4444 2 1 1 22
lowQualScore : . ..... . ... ......... .. . . . . .. .. . .... . ... ... . ....................... ... . ... .. . ...... . ... .. . ....... . . . ......... .... ......... . ...... . .......... .. ........................ .... . ... . .... . ... ....... . . .... ..... . . . ........... ...... . .. . . . ... .... . . . ..
lowQualScore : 7 00000 0 555 000000000 55 5 0 0 7 00 11 5 6666 4 888 888 0 33333333333333333333333 888 7 555 44 0 777777 7 111 99 3 8888888 3 4 8 333333333 1111 444444444 7 444444 0 2222222222 66 666666666666666666666666 9999 9 000 7 4444 7 999 1111111 4 2 6666 99999 6 6 8 22222222222 222222 2 55 5 5 2 555 8888 5 0 0 00
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-------AAT------AAT----AAAAACCGGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-------AA-------AAT----AAAANCCGGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAATCA---ACA---TTCCTATAGTGCATCAT-------AA-------AAT----AAAAGAAAGAGCAAATGTACATTTAAACCTGCCGA-TGG-GAGGCT--GA-TACAAATGCAAGCCGTAC--ACCATT-ATTCTC-CTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCA----TA--GTTCAT----TTAAT-TAT--TAGC-ACTATTATTCATGT------C-TTC-AA-----T-ATTGTATGGTGCCAGTGGGCC----TATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATTAGTTGCTCGCG-ATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG------A---TCA---TTCTTACCTTTTCTCTC-------A---------------AAAACCTGGA-TAAATGCGTATTTAAACTCGCCGA-CAG-AATGTCAAGA--ACATATGC-AGCTGTCT--GACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAA---TCA---TTTCCATTTTAATTCTT-------AATTAT---AATGGGGAAAACCTGGA-TAAA-------TTAAACGCGTCGA-CGG-GATACC--AAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcA-TAAATGTGTATTCAAACCCGCCGA-AGG-AATACA--AC-TACAAATGTA-GCCGTCC--AACATT-ACTCTC-C-----CAGTCAGTCGCGTACTTTCTTTATGTCC----TA--TTTTGT----TT----T-T--cagaagcaatatttctcctcaat
gi|14 : GTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---TTCA---TTA---TT
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---ATCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GA-----A-AGTGTATGGTGTCAGTGGGCA----TACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG-------------A---CCA---TTTTCATCTATGCTGTTGAATGTGAG-------AAC----AAAAACCGGA-TAAATATATATTTGAACCCGCCAA-TAGTGATG
gi|2 : aagttctatatactttttcaatatgataccatcgactttaaAGTCAGTCGAGTGCTTTCTTCATGTCACAATCA--ATTTGTTTTATT----T-T--TAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----A-AGTGTAGAGTGTTAGTGCGCA----AATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--Tagtcagtcgagtgctttcttcatgtcacaatcaatttgttttatttttagcaatttttattcatgtctcagacttcaaaaagtgtagagtgttagtgcgcaaatcaatgtgcataaacaataacaaagtttctcttcggtaaaataaagtgttacaacatgaaattgttgtcagaaagtggt
gi|3 : aagttctatatactttttcaatatgataccatcgactttaatatttagtccattgacctgattgatttaggagttgtcgttaagaatcaatgagtgtttacatttatcggtcaaaactcttgcatattacctcatgtcgcttcaatctcttcaagttcagatgaataaatatcaagaccattttcatctatgctgttgaatgtgagaacaaaaaccggataaatatatatttgaacccgccaatagtgatgTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTGACTATTA---TCA---TTCCCATCTTTTCTCTT-------AATTATGAGGAT----AAAAACTAGA-TAAATGCGT-TTTAATCCTGCTGATTGG-GATGCC--A---AGAAATG-AAGCCATCC--AACATTAATTCTC-C-------------------CTTTCTTCATGTCA----TG------------TT----T-T--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCT-ATCGTTTGGTATGGGTGGGTT----AAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--A----TC--TTTTGT----TT----T-----AGT-ATTTT-GTTAATGT------C-TTT--------------TATGGTGTCAGTGGGTA----TACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTTGGAT-CTTGCG---CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AA-----ATAGTATATGGTGCCAGTGGGCA----TATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCGTGGGATGCTCGTG---CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---ATCATAGTCA---TTCCCATCTTTTTTCCT-------AAT------TAT----GAGAA----A-AAAATGTAT-CTTAAAACTGTCAA--GT-GATGCC--AAGTTCAAGTGC-AGTCGTCC--GACGTT-GTTCTC------CCAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGTAC--AGCA---ATTTTC-TC---CCAGTCAGTCGCATTCTTTCTTCATGTCA----TA--TTTTGT----TTTATGT-T--TCGC-CTCTTTATTTATGT------C-ATCAAA-----T-AGTGTATGGTGTCAGTAGGT---------------------------------------CTGTCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCA----TATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTGT----TGCTCGAGAA-TAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAATGTAAATTTAAATCCGCCGA-TTA-GATG--------ACA--TGTA-GCCATTAAAGACATTTACTCTCACT------GCCAGTCGCATAATTTCTTCAGGTCA----TATGGTGTGT----TTG---T-TTATAAC-ATTTGTATTCATGT------CATCC-AA-----A-ATCATATGGAGGTATTGGGCAAAATTATC---G---
Alignments
lowQualScore : 33333 222 333333333 11 222 55555555555555555 111 11 333333 222 3333333 111111111 1111 333333333 111111 2222222222 222222222222222222222222 1111111 1111 11111 33333333333 444444 333 2222
lowQualScore : 0 22222 1 111 999999999 77 2 1 1 0 22 22 4 666 999999999 1 6 88888888888888888 666 5 666 22 5 111111 333 77 7777 9999999 0 0 2 666666666 2222 000000000 6 444444 5 3333333333 55 888888888888888888888888 7777 0 999 2 9999 1 888 5555555 0 2 0000 00000 0 0 0 33333333333 333333 3 99 3 2 0 555 4444 2 1 1 22
lowQualScore : . ..... . ... ......... .. . . . . .. .. . ... ......... . . ................. ... . ... .. . ...... ... .. .... ....... . . . ......... .... ......... . ...... . .......... .. ........................ .... . ... . .... . ... ....... . . .... ..... . . . ........... ...... . .. . . . ... .... . . . ..
lowQualScore : 7 00000 0 555 000000000 55 5 0 0 7 00 11 5 222 000000000 0 7 55555555555555555 888 7 555 44 0 777777 111 99 5555 8888888 3 4 8 333333333 1111 444444444 7 444444 0 2222222222 66 666666666666666666666666 9999 9 000 7 4444 7 999 1111111 4 2 6666 99999 6 6 8 22222222222 222222 2 55 5 5 2 555 8888 5 0 0 00
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------NATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTC--CGACA-TT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------AATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTC--CGACA-TT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAATCA---ACA---TTCCTATAGTGCATCAT-AA-------AATA------AAAGAA-AGAGCAAATGTACATTTAAACCTGCCGA-TGG-GAGGCT--GA-TACAAATGCAAGCCGTA--CACCA-TT-ATTCTC-CTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCA----TA--GTTCAT----TTAAT-TAT--TAGC-ACTATTATTCATGT------C-TTC-AA-----T-ATTGTATGGTGCCAGTGGGCC----TATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATTAGTTGCTCGCG-ATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG---ATCA---T------TCTTACCTTTTCTCTC-AA------------------AAACCTGGA-TAAATGCGTATTTAAACTCGCCGA-CAG-AATGTCAAGA--ACATATGC-AGCTGTC--TGACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAA---TCA---TTTCCATTTTAATTCTT-AAT------TATAATGGGGAAAACCTGGA-TAAA-------TTAAACGCGTCGA-CGG-GATACC--AAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcA-TAAATGTGTATTCAAACCCGCCGA-AGG-AATACA--AC-TACAAATGTA-GCCGTC--CAACA-TT-ACTCTC-C-----CAGTCAGTCGCGTACTTTCTTTATGTCC----TA--TTTTGT----TT----T-T--cagaagcaatatttctcctcaat
gi|14 : GTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---TTCA---TTA---TT
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---ATCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GA-----A-AGTGTATGGTGTCAGTGGGCA----TACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG-------------A---CCA---TTTTCATCTATGCTGTTGAATGTGAG-AACA------AAAACC-GGA-TAAATATATATTTGAACCCGCCAA-TAGTGATG
gi|2 : aagttctatatactttttcaatatgataccatcgactttaaAGTCAGTCGAGTGCTTTCTTCATGTCACAATCA--ATTTGTTTTATT----T-T--TAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----A-AGTGTAGAGTGTTAGTGCGCA----AATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--Tagtcagtcgagtgctttcttcatgtcacaatcaatttgttttatttttagcaatttttattcatgtctcagacttcaaaaagtgtagagtgttagtgcgcaaatcaatgtgcataaacaataacaaagtttctcttcggtaaaataaagtgttacaacatgaaattgttgtcagaaagtggt
gi|3 : aagttctatatactttttcaatatgataccatcgactttaatatttagtccattgacctgattgatttaggagttgtcgttaagaatcaatgagtgtttacatttatcggtcaaaactcttgcatattacctcatgtcgcttcaatctcttcaagttcagatgaataaatatcaagaccattttcatctatgctgttgaatgtgagaacaaaaaccggataaatatatatttgaacccgccaatagtgatgTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTGACTATTA---TCA---TTCCCATCTTTTCTCTT-AATTATGAGGATA------AAAACT-AGA-TAAATGCGT-TTTAATCCTGCTGATTGG-GATGCC--A---AGAAATG-AAGCCATC--CAACA-TTAATTCTC-C-------------------CTTTCTTCATGTCA----TG------------TT----T-T--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCT-ATCGTTTGGTATGGGTGGGTT----AAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--A----TC--TTTTGT----TT----T-----AGT-ATTTT-GTTAATGT------C-TTT--------------TATGGTGTCAGTGGGTA----TACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTTGGAT-CTTGCG---CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AA-----ATAGTATATGGTGCCAGTGGGCA----TATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCGTGGGATGCTCGTG---CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---ATCATAGTCA---TTCCCATCTTTTTTCCT-AAT------TATG------AGAA-----A-AAAATGTAT-CTTAAAACTGTCAA--GT-GATGCC--AAGTTCAAGTGC-AGTCGTC--CGACG-TT-GTTCTC------CCAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGTA--CAGCA----ATTTTC-TC---CCAGTCAGTCGCATTCTTTCTTCATGTCA----TA--TTTTGT----TTTATGT-T--TCGC-CTCTTTATTTATGT------C-ATCAAA-----T-AGTGTATGGTGTCAGTAGGT---------------------------------------CTGTCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCA----TATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTGT----TGCTCGAGAA-TAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAATGTAAATTTAAATCCGCCGA-TTA-GATG--------AC--ATGT-AGCCATTAAAGACATTT-ACTCTCACT------GCCAGTCGCATAATTTCTTCAGGTCA----TATGGTGTGT----TTG---T-TTATAAC-ATTTGTATTCATGT------CATCC-AA-----A-ATCATATGGAGGTATTGGGCAAAATTATC---G---
Alignments
lowQualScore : 33333 222 333333333 11 222 55555555555555555 111 11 333333 222 1 3333333 111111111 1111 333333333 111111 2222222222 222222222222222222222222 1111111 1111 11111 33333333333 444444 333 2222
lowQualScore : 0 22222 1 111 999999999 77 2 1 1 0 22 22 4 666 999999999 1 6 55555555555555555 666 5 666 22 5 111111 1 333 77 3 9999999 0 0 2 666666666 2222 000000000 6 444444 5 3333333333 55 888888888888888888888888 7777 0 999 2 9999 1 888 5555555 0 2 0000 00000 0 0 0 33333333333 333333 3 99 3 2 0 555 4444 2 1 1 22
lowQualScore : . ..... . ... ......... .. . . . . .. .. . ... ......... . . ................. ... . ... .. . ...... . ... .. . ....... . . . ......... .... ......... . ...... . .......... .. ........................ .... . ... . .... . ... ....... . . .... ..... . . . ........... ...... . .. . . . ... .... . . . ..
lowQualScore : 7 00000 0 555 000000000 55 5 0 0 7 00 11 5 222 000000000 0 7 77777777777777777 888 7 555 44 0 777777 7 111 99 3 8888888 3 4 8 333333333 1111 444444444 7 444444 0 2222222222 66 666666666666666666666666 9999 9 000 7 4444 7 999 1111111 4 2 6666 99999 6 6 8 22222222222 222222 2 55 5 5 2 555 8888 5 0 0 00
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------NATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------NATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAATCA---ACA---TTCCTATAGTGCATCAT-AA-------AATA------AAAGAA-AGAGCAAATGTACATTTAAACCTGCCGA-TGG-GAGGCT--GA-TACAAATGCAAGCCGTAC--ACCATT-ATTCTC-CTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCA----TA--GTTCAT----TTAAT-TAT--TAGC-ACTATTATTCATGT------C-TTC-AA-----T-ATTGTATGGTGCCAGTGGGCC----TATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATTAGTTGCTCGCG-ATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG---ATCA---T------TCTTACCTTTTCTCTC-AA------------------AAACCTGGA-TAAATGCGTATTTAAACTCGCCGA-CAG-AATGTCAAGA--ACATATGC-AGCTGTCT--GACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAA---TCA---TTTCCATTTTAATTCTT-AAT------TATAATGGGGAAAACCTGGA-TAAA-------TTAAACGCGTCGA-CGG-GATACC--AAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcA-TAAATGTGTATTCAAACCCGCCGA-AGG-AATACA--AC-TACAAATGTA-GCCGTCC--AACATT-ACTCTC-C-----CAGTCAGTCGCGTACTTTCTTTATGTCC----TA--TTTTGT----TT----T-T--cagaagcaatatttctcctcaat
gi|14 : GTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---TTCA---TTA---TT
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---ATCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GA-----A-AGTGTATGGTGTCAGTGGGCA----TACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG-------------A---CCA---TTTTCATCTATGCTGTTGAATGTGAG-AACA------AAAACC-GGA-TAAATATATATTTGAACCCGCCAA-TAGTGATG
gi|2 : aagttctatatactttttcaatatgataccatcgactttaaAGTCAGTCGAGTGCTTTCTTCATGTCACAATCA--ATTTGTTTTATT----T-T--TAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----A-AGTGTAGAGTGTTAGTGCGCA----AATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--Tagtcagtcgagtgctttcttcatgtcacaatcaatttgttttatttttagcaatttttattcatgtctcagacttcaaaaagtgtagagtgttagtgcgcaaatcaatgtgcataaacaataacaaagtttctcttcggtaaaataaagtgttacaacatgaaattgttgtcagaaagtggt
gi|3 : aagttctatatactttttcaatatgataccatcgactttaatatttagtccattgacctgattgatttaggagttgtcgttaagaatcaatgagtgtttacatttatcggtcaaaactcttgcatattacctcatgtcgcttcaatctcttcaagttcagatgaataaatatcaagaccattttcatctatgctgttgaatgtgagaacaaaaaccggataaatatatatttgaacccgccaatagtgatgTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTGACTATTA---TCA---TTCCCATCTTTTCTCTT-AATTATGAGGATA------AAAACT-AGA-TAAATGCGT-TTTAATCCTGCTGATTGG-GATGCC--A---AGAAATG-AAGCCATCC--AACATTAATTCTC-C-------------------CTTTCTTCATGTCA----TG------------TT----T-T--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCT-ATCGTTTGGTATGGGTGGGTT----AAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--A----TC--TTTTGT----TT----T-----AGT-ATTTT-GTTAATGT------C-TTT--------------TATGGTGTCAGTGGGTA----TACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTTGGAT-CTTGCG---CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AA-----ATAGTATATGGTGCCAGTGGGCA----TATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCGTGGGATGCTCGTG---CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---ATCATAGTCA---TTCCCATCTTTTTTCCT-AAT------TATG------AGAA-----A-AAAATGTAT-CTTAAAACTGTCAA--GT-GATGCC--AAGTTCAAGTGC-AGTCGTCC--GACGTT-GTTCTC------CCAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGTAC--AGCA---ATTTTC-TC---CCAGTCAGTCGCATTCTTTCTTCATGTCA----TA--TTTTGT----TTTATGT-T--TCGC-CTCTTTATTTATGT------C-ATCAAA-----T-AGTGTATGGTGTCAGTAGGT---------------------------------------CTGTCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCA----TATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTGT----TGCTCGAGAA-TAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAATGTAAATTTAAATCCGCCGA-TTA-GATG--------ACA--TGTA-GCCATTAAAGACATTTACTCTCACT------GCCAGTCGCATAATTTCTTCAGGTCA----TATGGTGTGT----TTG---T-TTATAAC-ATTTGTATTCATGT------CATCC-AA-----A-ATCATATGGAGGTATTGGGCAAAATTATC---G---
Alignments
lowQualScore : 33333 222 333333333 11 222 55555555555555555 111 11 333333 222 1 3333333 111111111 1111 333333333 111111 2222222222 222222222222222222222222 1111111 1111 11111 33333333333 444444 333 2222
lowQualScore : 0 22222 1 111 999999999 77 2 1 1 0 22 22 4 666 999999999 1 6 55555555555555555 666 5 666 22 5 111111 1 333 77 3 9999999 0 0 2 666666666 2222 000000000 6 444444 5 3333333333 55 888888888888888888888888 7777 0 999 2 9999 1 888 5555555 0 2 0000 00000 0 0 0 33333333333 333333 3 99 3 2 0 555 4444 2 1 1 22
lowQualScore : . ..... . ... ......... .. . . . . .. .. . ... ......... . . ................. ... . ... .. . ...... . ... .. . ....... . . . ......... .... ......... . ...... . .......... .. ........................ .... . ... . .... . ... ....... . . .... ..... . . . ........... ...... . .. . . . ... .... . . . ..
lowQualScore : 7 00000 0 555 000000000 55 5 0 0 7 00 11 5 222 000000000 0 7 77777777777777777 888 7 555 44 0 777777 7 111 99 3 8888888 3 4 8 333333333 1111 444444444 7 444444 0 2222222222 66 666666666666666666666666 9999 9 000 7 4444 7 999 1111111 4 2 6666 99999 6 6 8 22222222222 222222 2 55 5 5 2 555 8888 5 0 0 00
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------NATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------NATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAATCA---ACA---TTCCTATAGTGCATCAT-AA-------AATA------AAAGAA-AGAGCAAATGTACATTTAAACCTGCCGA-TGG-GAGGCT--GA-TACAAATGCAAGCCGTAC--ACCATT-ATTCTC-CTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCA----TA--GTTCAT----TTAAT-TAT--TAGC-ACTATTATTCATGT------C-TTC-AA-----T-ATTGTATGGTGCCAGTGGGCC----TATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATTAGTTGCTCGCG-ATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG---ATCA---T------TCTTACCTTTTCTCTC-AA------------------AAACCTGGA-TAAATGCGTATTTAAACTCGCCGA-CAG-AATGTCAAGA--ACATATGC-AGCTGTCT--GACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCATAA---TCA---TTTCCATTTTAATTCTT-AAT------TATAATGGGGAAAACCTGGA-TAAA-------TTAAACGCGTCGA-CGG-GATACC--AAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcA-TAAATGTGTATTCAAACCCGCCGA-AGG-AATACA--AC-TACAAATGTA-GCCGTCC--AACATT-ACTCTC-C-----CAGTCAGTCGCGTACTTTCTTTATGTCC----TA--TTTTGT----TT----T-T--cagaagcaatatttctcctcaat
gi|14 : GTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---TTCA---TTA---TT
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---ATCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GA-----A-AGTGTATGGTGTCAGTGGGCA----TACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG-------------A---CCA---TTTTCATCTATGCTGTTGAATGTGAG-AACA------AAAACC-GGA-TAAATATATATTTGAACCCGCCAA-TAGTGATG
gi|2 : aagttctatatactttttcaatatgataccatcgactttaaAGTCAGTCGAGTGCTTTCTTCATGTCACAATCA--ATTTGTTTTATT----T-T--TAGCAATTTTTATTCATGTCTCAGAC-TTCAAA-----A-AGTGTAGAGTGTTAGTGCGCA----AATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--Tagtcagtcgagtgctttcttcatgtcacaatcaatttgttttatttttagcaatttttattcatgtctcagacttcaaaaagtgtagagtgttagtgcgcaaatcaatgtgcataaacaataacaaagtttctcttcggtaaaataaagtgttacaacatgaaattgttgtcagaaagtggt
gi|3 : aagttctatatactttttcaatatgataccatcgactttaatatttagtccattgacctgattgatttaggagttgtcgttaagaatcaatgagtgtttacatttatcggtcaaaactcttgcatattacctcatgtcgcttcaatctcttcaagttcagatgaataaatatcaagaccattttcatctatgctgttgaatgtgagaacaaaaaccggataaatatatatttgaacccgccaatagtgatgTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTGACTATTA---TCA---TTCCCATCTTTTCTCTT-AATTATGAGGATA------AAAACT-AGA-TAAATGCGT-TTTAATCCTGCTGATTGG-GATGCC--A---AGAAATG-AAGCCATCC--AACATTAATTCTC-C-------------------CTTTCTTCATGTCA----TG------------TT----T-T--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCT-ATCGTTTGGTATGGGTGGGTT----AAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--A----TC--TTTTGT----TT----T-----AGT-ATTTT-GTTAATGT------C-TTT--------------TATGGTGTCAGTGGGTA----TACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTTGGAT-CTTGCG---CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AA-----ATAGTATATGGTGCCAGTGGGCA----TATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCGTGGGATGCTCGTG---CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---ATCATAGTCA---TTCCCATCTTTTTTCCT-AAT------TATG------AGAA-----A-AAAATGTAT-CTTAAAACTGTCAA--GT-GATGCC--AAGTTCAAGTGC-AGTCGTCC--GACGTT-GTTCTC------CCAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGTAC--AGCA---ATTTTC-TC---CCAGTCAGTCGCATTCTTTCTTCATGTCA----TA--TTTTGT----TTTATGT-T--TCGC-CTCTTTATTTATGT------C-ATCAAA-----T-AGTGTATGGTGTCAGTAGGT---------------------------------------CTGTCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCA----TATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTGT----TGCTCGAGAA-TAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAATGTAAATTTAAATCCGCCGA-TTA-GATG--------ACA--TGTA-GCCATTAAAGACATTTACTCTCACT------GCCAGTCGCATAATTTCTTCAGGTCA----TATGGTGTGT----TTG---T-TTATAAC-ATTTGTATTCATGT------CATCC-AA-----A-ATCATATGGAGGTATTGGGCAAAATTATC---G---
blockSeqs : CTATA G . TTTACATTT CG T T T AA AA G GCC TAATTG T G TTATAATGGGG CCT . GTA TT T AAGA T CA AA A TCC A CAATCAA TTTA TATGTT A CTCAGA A AAAGATCT GT AAATCAATGTGCATAAA ACGC TCG T TACA A CTA ACGTTCT T CCAG TTTGC ATCTAC ATTG T TG A G AA TGA C G A GT
blockSeqs : T A TA GA T ACT TAGTCA A . TTATGAGGATA CCT . GTA C . AAGT A TA . T ACT G TATGG . GTTTA . . . AAAA GT ATATCGAGAA C G C . G TG T T . CGT GTCTAG ACTG T GG A G . AT C A
blockSeqs : TC AG G . TCA G . TGTGAGAACA CC . ATA C . AAGT A AA . . C T TAT . TT . . . AAAT TC ATACTGT C C T . G AA T T . TAA G C . . . . . AA C
blockSeqs : GA TT G . TTA T . TTATG CT . AAA A . ACT A CA . . C G TCT . TT . . . AAAT GT TAAACGT T A A . A TG A T . . G
blockSeqs : TA GA G . CCA T . . . . GT T . A A TG . . C T TAT . TT . . . GAA GT ATACCGT C G C . A TG A A .
blockSeqs : T AC C . TCA . AT T . . . TA . A TG . T . . AAA TC ATATTGT C G C . G AC A C .
blockSeqs : AA . . T . . . . . . . . . C . T . A . T . .
blockSeqs : . . A . T
blockSeqCons : *** TTATGAGGG******** CCT AAGT** TA* C****** TT******* AAA******* ATACCGT***************** C*** G**********
originalCons : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AAT------NATA------AAAACC-GGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCC--GA-TACAAATGCAAGCCGTCC--GACATT-ATTCTC-CT---CCAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AA-----N-AGCGTATGGTGTCAGTGGGCA----TATC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
finalCons : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---ATCA---TCA---TTCCCATCTTTNCTCTT-AATTATGAGGG--------AAAACCTGGA-TAAATGTGTATTTAAACCCGCCGA-CGG-GATGCCAAGT--ACAAATGTA-GCCGTCC--GACATT-ATTCTCC------CAGTCAGTCGCGTNCTTTCTTCATGTCA----TA--NTTTGT----TTTT-------TAGC-ATTTTTATTCATGT------C-TTCAAA-------AGCGTATGGTGTCAGTGGGCATACCGT-----------------CAAC---AACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACCG----------TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Alignments
lowQualScore : 33333 222 333333333 11 2222222 11 33333333 111 11 1111111 11 111 11111 111 333333333 111111 22222 33333333333 11111 1111111 1111 11111 33333333333 444444 333 2222
lowQualScore : 0 22222 1 111 999999999 77 2 1 1 0 22 22 4 3333333 999999999 1 11 33333333 222 666 22 5 1111111 3 1 5 1 66 2 11 000 44444 0 5 4 33 1 444 3 777777777 6 444444 5 5 22222 55 22 1 888 11111111111 7777 0 11111 9999 1 888 5555555 0 2 0000 00000 0 0 0 33333333333 333333 3 99 3 2 0 555 4444 2 1 1 22
lowQualScore : . ..... . ... ......... .. . . . . .. .. . ....... ......... . .. ........ ... ... .. . ....... . . . . .. . .. ... ..... . . . .. . ... . ......... . ...... . . ..... .. .. . ... ........... .... . ..... .... . ... ....... . . .... ..... . . . ........... ...... . .. . . . ... .... . . . ..
lowQualScore : 7 00000 0 555 000000000 55 5 0 0 7 00 11 5 5555555 000000000 0 00 33333333 222 555 44 0 1111111 4 8 0 4 99 0 77 000 33333 3 3 0 00 4 444 0 333333333 7 444444 0 0 55555 66 55 1 888 33333333333 9999 9 00000 4444 7 999 1111111 4 2 6666 99999 6 6 8 22222222222 222222 2 55 5 5 2 555 8888 5 0 0 00
consensus : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---A---TCA---TCA---TTCCCATCTTTNCTCTTAATTATGA--GG--G-AAAACCTGGATAAATGTGTATTTAAACCCGCCGA-CGG-GATGCCAAGTACAAATGCA-GCCGTCC--GACATT-ATTC---TCC-----CAGTCAGTCGCGTTCTTTCTTCATGTCATA--TTTTGTTT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AAA-----AGCGTATGGTGTCAGTGGGCATACC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
Reference ( family-638 ) : TATTTAGTCCGTC----GACCCGATTGATTTNGGAGTTGTCGTTAAGAATTTACAACGAGTGTTTACATTTATCGGCCAAAACGCTNGCATANTACCTCGTGTCGCTTAAATCTCTACAAACTCAGACGNATACATATCAAGGAATCTG---A---TCA---TCA---TTCCCATCTTTNCTCTTAATTATGA--GG--G-AAAACCTGGATAAATGTGTATTTAAACCCGCCGA-CGG-GATGCCAAGTACAAATGTA-GCCGTCC--GACATT-ATTC---TCC-----CAGTCAGTCGCGTNCTTTCTTCATGTCATA--NTTTGTTT----T-T--TAGC-ATTTTTATTCATGT------C-TTC-AAA-----AGCGTATGGTGTCAGTGGGCATACC---G---T-------CAA---CAACAA--GCCTTCT----CTTCGGTAATATA-TGGTCT------TAATCCCCGAGTTTGTTGTTCA----GAAAGCGA--TGCATCTGCCATTTTAACC-----G-----TCGCTGC-C-T--CTGTTGTCGTTGGATGCTCGCG-A-CAAAT--A-ACGAATTNACTGNTTTCGGNNATTCTT
gi|1 : TATTTAGTCAGTA----GAACCAATTGATTTCGGACTTTTCGTTAAAAATTTACAACGAGTG---------AT--GCCAAAATGTTGGCATAGTATCTCATATCCCTAAAAGCTTTACAAACTCCGATGTATACATATGAAGAAATCTGTAAA---TCA---ACA---TTCCTATAGTGCATCATAAA-ATAA--AA--G-AAA----GAGCAAATGTACATTTAAACCTGCCGA-TGG-GAGGCTGA-TACAAATGCAAGCCGTAC--ACCATT-ATTC---TCCTTGACCAGTCAGTTGCGTTTTTTTTTCATGTCATA--GTTCATTTAAT-TAT--TAGC-ACTATTATTCATGT------C-TTC-AAT-----ATTGTATGGTGCCAGTGGGCCTATC---GAAAT-------CAA----AACAA--GCTTTCT----TTTCAATAATATA-TGGTCT------TAATTCCTGAGTTTGTTGTTCA----GAGAGCGA--TGCATCTGCCATCTTAACC-----G-----TCGCTGC-CTT--TTGTTGTCATTAGTTGCTCGCG-ATTAAAT--A-A-GACTTCACTGTTTTTAGTAATTCTT
gi|10 : AAATCTCTACAAACTCAGACAAATAAGTATCAAGGAGCAAG---A---TCA---T------TCTTACCTTTTCTCTCAA---------------AAACCTGGATAAATGCGTATTTAAACTCGCCGA-CAG-AATGTCAAGAACATATGCA-GCTGTCT--GACca
gi|11 : taTGTTGCTAAAATCTCTATAAACTCAGGCGAACACATATTAAATAATCTGGCCA---TAA---TCA---TTTCCATTTTAATTCTTAATTATAATGGG--G-AAAACCTGGATAAA-------TTAAACGCGTCGA-CGG-GATACCAAGTAC
gi|12 : ATTTAGTCCATCTATAGACGCGATTGAACTGGGAGTTGGCGTTTAGA
gi|13 : agttctttttaattttttctattgaatttaattttcgacttcATAAATGTGTATTCAAACCCGCCGA-AGG-AATAC-AACTACAAATGTA-GCCGTCC--AACATT-ACTC---TCC-----CAGTCAGTCGCGTACTTTCTTTATGTCCTA--TTTTGTTT----T-T--cagaagcaatatttctcctcaat
gi|14 : GTCGTTT-----TTTACAAACTCAGACAGA-GCATATGAAGGAATCCT---T---TCA---TTA---TT
gi|15 : gtgttgacaatgaTCACTTATGTCTTCACAAATCCAGGCTTATACATATCAAGGAATCTG---A---TCA---TAATTGTTCCCATCTTTatttcaat
gi|16 : tt-------CAA---CAACAC--GCTTTCT----CTTCAGTAATGCA-TGGTCT------TAAACGATGAGTTTATTATTCA----GAAAGCAA--
gi|17 : T------T-TCC-GAA-----AGTGTATGGTGTCAGTGGGCATACT---G---T-------CAG---CACTAA--CCCTTTT----C--CGGTgc
gi|2 : tagtcactttTATTTAGTCCATT----GACCTGATTGATTTAGGAGTTGTCGTTAAGAAT---CAATGAGTGTTTACATTTATCGGTCAAAACTCTTGCATATTACCTCATGTCGCTTCAATCTCTTCAAGTTCAGATGAATAAATATCAAG----------------A---CCA---TTTTCATCTATGCTGTTGAATGTGA--GAACA-AAAACC-GGATAAATATATATTTGAACCCGCCAA-TAGTGATG---AGT-------CA-GTCGAGT--G-CTTT-CTTCATGTCA-----CAATCAAT----TTGTTT----------TA--TTTT-------------TAGCAATTTTTATTCATGTCTCAGAC-TTCAAAA-----AGTGTAGAGTGTTAGTGCGCAAATCAATG---TGCATAAACAA---TAACAA--AGTTTCT----CTTCGGTAAAATA-AAGTGT------TACAACATGAAATTGTTG-TCA----GAAAGTGG--T
gi|3 : aagttctatatactttttcaatatgataccatcgactttaaTCGCTGAAATCTCTACAAATGCAGACACATCAATATCAATGATTCTG---ACTATTA---TCA---TTCCCATCTTTTCTCTTAATTATGA--GG--ATAAAAACTAGATAAATGCGT-TTTAATCCTGCTGATTGG-GATGCCAAG---AAATGAA-GCCATCC--AACATTAATTC---TCC-------------------CTTTCTTCATGTCATG--------TT----T-T--TAGA-ATACGTATTGGTAT------C-TTC-AAAGATCTATCGTTTGGTATGGGTGGGTTAAAC---G---T-------TAA---CAACAA---CATTCTTACACTTCAGTAATATA-TGGTCT------AAATCTCCGAGTTTGTTTTTCACCAGGCAAGCGA----------CCATTTTAACA-----G-----TCGCTG
gi|4 : TTCTTTCGTTACG--ATC--TTTTGTTT----T-----AGT-ATTTT-GTTAATGT------C-TTT-------------TATGGTGTCAGTGGGTATACC---G---T-------CAAACGCATCAA--GACTTCT----TTTTAGTAAGATA-TGGTCT------AAATCCCCGAGTATCTTGTTCA----GAAAGCGA--CGTAGCGGTCATTCTGACC-----ATCTACTCGCTGC-A-TTGCAGTTGTCGTTGGAT-CTTGCG---CAAAT--ATACAAATTtactgt
gi|5 : ttaaTTGTTCATGT------C-TTC-AAAT----AGTATATGGTGCCAGTGGGCATATT---G---T-------CAA---C-GTAATCGCCTT-T----TTCCGGTAGTATACTAGTATACGTTCTAATCTCCGAA---GTTGTTCA----GGAAGC-ATTTGCGTCTGGTA-TCTAATCGTCTAG-----TCGCTGCAC-TG-CTTTTGTCGTGGGATGCTCGTG---CAAACA-A-ACGAATTGGCTgg
gi|6 : TCGTGTCGCTTAAACCTCTACAAACTCATACAAATACGTATCAAGCAATCTG---A---TCATAGTCA---TTCCCATCTTTTTTCCTAATTATGA------G-AAAA-------AAATGTAT-CTTAAAACTGTCAA--GT-GATGCCAAGTTCAAGTGCA-GTCGTCC--GACGTT-GTTC---TCC-----CAGAGAGTTGCATGTTTT
gi|7 : CAAATGTG-GCTGTAC--AGCAAT-TTTC---TCC-----CAGTCAGTCGCATTCTTTCTTCATGTCATA--TTTTGTTTTATGT-T--TCGC-CTCTTTATTTATGT------C-ATC-AAAT----AGTGTATGGTGTCAGTAGGT---CT---G-----------------------------TCT----CTACAGTAATATA---GTAT------AAATCCCCGGATTTGTTGATCA----G
gi|8 : gTGCCAGTGGGCATATC---G---AGAA----CAA---CAACAA--GCATTCT----CTTTTGTAATTCA-ACGCCT------TAATCCCTGAGTTTGCTGCGTA----GAAACCGA--TAAATCTGCCATTTTAACC-----G-----TCGCTTC-C----CTGT--TTGT----TGCTCGAGAA-TAAATTGA-ACGAATTAACTGATTTCGGGTATTTTTtga
gi|9 : AAATGTAAATTTAAATCCGCCGA-TTA-GATG------ACA--TGTA-GCCATTAAAGACATTTACTC---TCA-----CTGCCAGTCGCATAATTTCTTCAGGTCATATGGTGTGTTTG---T-TTATAAC-ATTTGTATTCATGT------CATCC-AAA-----ATCATATGGAGGTATTGGGCA