lowQualScore : 1 1 444 8888 77777777777777777777 1 1 1 1111111111 1 88888888888888888888888888888888888888888888888888888888 44444444
lowQualScore : 7 7 666 5555 6 44444444444444444444 88 2 33 2 3 2 5 2 0 4 2 333 6666666666 9999 33 222 1 111 1 1 1 0 22 66666666666666666666666666666666666666666666666666666666 5555 22222222 44
lowQualScore : . . ... .... . .................... .. . .. . . . . . . . . ... .......... .... .. ... . ... . . . . .. ........................................................ .... ........ ..
lowQualScore : 0 0 000 0000 0 00000000000000000000 55 5 99 7 4 5 1 0 0 0 0 333 3333333333 5555 00 000 1 999 2 2 2 5 99 33333333333333333333333333333333333333333333333333333333 0000 11111111 22
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAATATGCACATGGT----TTAAAACAAAA---ATATCGCGCAAACANNCTANTCGT--AAT-CGG-AACATCGCTCGGCC-A-TT-CCGC-CTAC---GTACCAA------AAC---GC--A---AT-CGGAA---CATCGC-T-CG-GCCAT--TTCCG-CCT-AC--GT--A--CG--GAA------AT---T--T-C-----GTACG--TAGGCGGAAATGGCCGA----GC--G--ATGT--TCCGAT
Reference ( gi|2 ) : TCGCAAAAACTGGACTCATTAAACAAAACGCGTTGCTATTTGGA-ATGGTGAAATTAAAACGAAATAAATATTACGCA--CAGC-TGCTTGT--AAT-CTG-AACATCGCTCAGCC-A-TT-CCGC-CTAC---GTACCAA------AAC---AC--A---AT-CGGAA---CATCGC-T-CG-GCAAT--TTCCG-ACT-AC--AT--A--CG--GAA------AT---T--T-C-----ATACG--TGGACGGAAATGGCCGA----GC--A--A--T--TCCGAT
gi|6 : TGCAATATGCACATGGT----TTAAAACAAAA---ATAT-ATGCAAACAAG-TAATC----AAT-CGG-AACATCGTTCGGCCAA-TT-CCGC-ATTC---GT
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcgaATCGCGTA--CATCCTACTTGTTCAAT-CGG-AACATTGCTCGGTC-A-TTTCCGC-CTTC---GTACGAA------AATCGAACG-A---ATGCGGA-----ATTGG-C-CGAACGATG-TTCCG-ATT-g
gi|7 : atttggtatttgtaaagtcGC--AAT-CGG-AACATCGCTCGGTC-A-TT-------TAC---GTA----------AAC---GT-------T-TGAAA---CA------------AATCATTCCG-A---AC--ATTTA--CG--GAA------AT---T--gattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|5 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgacGT--AAT-CGG-AACATCGCTCGGTC-ATTT-CCGC-CTAC---GTACGAA------Agccgagtgatgttccgatt
gi|5 : agtaatatgcgttaattcggaacatcgctcggtaaT--AATTCGG-AACATCGCTCGGTA-A-TT-TCG---TAC---GTAgcttcgttaccacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|8 : agtaatatgcgtT--AAT--TGCAATATCGCTCGGTC-A-TTACCGC-CTAC---GTAggcggaaatgaccgagcgatgttccgattacgcttcgttaccacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|11 : accagaacatcgctcggctattcccgtc--AAT-CGG-AACATCACTCGGCC-ATTT-CCGC-CAAC---GTACCAAAT----AAT---GT--A---AG-CGGAA---atatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|11 : tccaaaagatacttgtcttatataactac--AAT-TGG-AACATCTCTCGGCC-ATTT-CCGC-TTAC---ATatggccgagagatgttccaattga
gi|14 : tccaaaagatacttgtcttatataactacaatcggaacatcactcggccatttccgccaacgtaccaaata--AAT-CGG-AACATCGCTCGGCC-A-TT-ga
gi|4 : agtgtgagttaacttctttttaacaataggaatattgctcagccatttccgtaaacgttcaa--AAT-CGG-AACATCTCTCGGCC-G-TTATCGC-CTAC---G-ACC-G------AAC---GC--A---GG-CGGAA---gttctttttaag
gi|4 : c--AAT-TGG-AACAGCACTCGGCC-A-TTTCCGC-CTGC---GTatggccgagtgctgttccaattggtttgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|17 : caatcggaacatctctcggccgttatcgcctacgaccga--AAT-CGG-AACATCGCTCGGCC-ATTT-CCGC-CTTC---GTggtttgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|19 : ccgactaagtacgcaataattcga--AAT-CGG-AGCATCGCTCGGTC-ATTT-CCGC-CAAT---GTACGAA------Ag
gi|18 : gtta--AAT-CGG-AATATCGCTTGGTC-A-TTTCCGC-CT-C---GTAC
gi|3 : caatcggaacatcgctcT-CGG-AATAACGCTCGTCC-A-TTTCCGC-CCAT---GT--CGA------AGA---AA--A---AT-AGGAA---CATCGC-T-CG-GCCAT--TTCCG-CCC-AT--GT--G--CG--T-T------AT---T--T-CGAAGAATTCG--TAAGCGGAAATGGCCGA----GCGAA--A--T--TCCGA
gi|8 : gttattctgacacgaccaattctcagG-AACATCGCTCGGCT-A-TTCCCGT-CTAC---GTAgtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|8 : accaCAACC-A-TT-TTAC-TTATAAAGTA----------AAC---AT--ATTAAT-TGCAA---TATCGC-T-CG-GTCAT--TACCG-CCT-A------------------------------------------CG--TAGACGGGAATAGCCGA----GC--G--A--T--ggcggtaatgaccgagcgatattgcaattaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|1 : accagaacC-A-CT-CAGC-CTGC---AAAGCAACAGCGGAAA---GC--A---AT-CGGAA---CAACGC-T-CG-GTCAT--TTCCG--CTGAC--GT--T--CG--CAA------AT---T--T-T-----AAATT--TAGACGAAAAATGCCGA----GT--G--G--TGCTCCGATtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|12 : aagaaaacatcagttgaatggcaaaacagagtttC-A-TT-CCGGACAAC---GTAT----------GC---GC--A---AT-TGGAA---CATCGC-T-CG-GAAAT-----CG-A-----------A--CG------------T---T--T-----------------ACGAAAATGGCCGA----GC--GGTA--T--TTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|3 : ggcaaatgtct-A-TT-CTGA-C-AC---G-ACCAA------TTC---TC--A---GT-CGGAA---TTTCGC-T-CG-GCCAT--TTCCG-CTT-ACGAAT--T--CTTCGAA------AT---A--A-C-----GCACA--TGGGCGGAAATGGCCGA----GC--G--ATGT--TCCTATtgacttatgcggaaat
gi|10 : gtt-CTAC-----ACCAA------TAC---CCTCA---AT-CGGAA---CACCGC-T-CG-GCCAT--TTCCG-TAA-AC--GT--T--C---GAA------ATAAAT--T-C-----GTATA--T--------ATGGCCGA----GC--G--ATGT--TTCGATttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|5 : a---GTAACGA------AGC---GT--A---AT-CGGAA---CATCGC-T-CG-GTCAT--TTCCG-CCT-AC--GT--A--C---GAA------AT---T--tgtgggttttggtattgtt
gi|14 : agtaatatgcgttaattcggaacatcgctcggtAA------AGA---AC--A---AT-CGGAA---CATCGC-T-CG-GCCAT--TT-TG-A-----------A--CG------------T---T--T-----------------ACGGAAATGGCTGA----GC--AATA--T--TCCTATcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|4 : agtgtgagttaacttctttttaacaA------AAC----C--A---AT-TGGAA---CAGCAC-T-CG-GCCAT--TTCCG-CCT-GC--GT--T--CG--G---------T-----------------CG--TAGGCGATAACGGCCGA----GA--G--ATGT--TCCGATttaag
gi|11 : ca------AACT--AC--A---AT-CGGAA---CATCAC-T-CG-GCCAT--TTCCG-CCA-AC--GT--A--C---CAA------AT--------------A-ATG--TAAGCGGAAATGGCCGA----GA--G--ATGT--TCCAATgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|7 : tccaaaagatacttgtcttatatAC---GC--A---AT-CGGAA---CATCGC-T-CG-GTCAT--TTACG-TAA-AC--GT--T--TG--AAACAAATCAT---T--C-C-----GAACA--TTTACGGAAATTGCCGA----GT--G--ATGT--TCCGATtga
gi|14 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattg---AC--A---AT-AGGAA---TATTGC-T-CA-GCCAT--TTCCG---T-A---A---A--CG----------------T--T-C-----A-------------AAATGGCCGA----GC--G--ATGT--TCCGATt
gi|9 : agtgtgagttaacttcttttta---AC--A---AT-CGGAA---CGCCACTT-TG-GT-AT--TTCTG-CCT-CC--GT--A--C---GAA------AT---G--T-----------G--TAGGTGGAAACGGTCCA----AC--G--ATGT--TCCGATtgttctttttaag
gi|11 : accaC--A---AT-TGGAA---CATCTC-T-CG-GCCAT--TTCCG-CTT-AC--AT-----------T------AT---T--T-G-----GTACG--TTGGCGGAAATGGCCGA----GT--G--ATGT--TCCGATccaactactttacgatgactcacggaatcta
gi|6 : tccaaaagatacttgtcttatataactacaC--A---AT-CGGAA---CATCGT-T-CG-GCCAA--TTCCG-CAT-TC--GT--T--CG----A------TT---T--T-C-----GTACG--AAGGCGGAAATGACCGA----GC--A--ATGT--TCCGATa
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaC--A---AT-CGGAA---CATTGC-T-CG-GTCAT--TTCCG-CCT-TC--GT--A--CG--AAA------A-------T-C-----GAACGAATG--CGGAATTGGCCGA----AC--G--ATGT--TCCGATattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|15 : atttggtatttgtaaagtcatcgcgtacatcctacttgttC--A---AT-CAGAA---CATCGC-T-CG-ATACT--TTCCG-TAT-AC--TT--A--CG--T-T------AT---T--T-C-----TTACGT-TATGCGGAAATGATCGA----Gtgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|4 : C--A---AT-CGGAA---CATCTC-T-CG-GCCGT--TATCG-CCT-AC--G---A--CC--GA-------------------------ACG--CAGGCGGAAATGGCCGAGT--GC--T--G--T--TCCAATagatactgcaatt
gi|17 : C--A---AT-CGGAA---CATCGC-T-CG-GCCAT--TTCCG-CCT-TC--GT--T--C---GAATT----AT---T--G-C-----GTACT--TAGTCGGtggtttgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|9 : C--A---AT-CGGAA---CATCGT-T-GG-ACCGT--TTCCA-CCT-AC--AC------------------AT---T--T-C-----GTACG--GAGGCAGAAAT-ACCAAAGTGGC-----G--T--TCCGAT
gi|12 : acC--A---AT-CGAAA---TACCGC-T-CG-GCCAT--TTTCG-tgtccaactactttacgatgactcacggaatcta
gi|18 : ggcaaatgtctcattccggacaacgtatgcgcaattggaacatcgctcggaaatcgaacgtttaC--A---AT-CGGAA---CATCGC-T-CG-acttatgcggaaat
gi|7 : --A---AT-CGGAA---CATCAC-T-CG-GCAAT--TTCCG---T-AA--AT--GTTCG--GAATGATTTGT---T--T-C-----AAACG--TTTACGTAAATGACCGA----GC--G--ATGT--TCCGATtacgaggcggaaatgaccaagcgatattccgatt
gi|10 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgacgca--A---AT-CGAAA---CATCGC-T-CG-GCCAT------------AT--AT--A--CG---AATTT---AT---T--T-C-----GAACG--TTTACGGAAATGGCCGA----GC--GGTG--T--TCCGAT
gi|15 : --A---AT-TGCAG---TATCTC-T-CG-ATCAT--TTCCGCATA-AC--GT--A---A--GAA------AT---A--A-C-----GTAAG--TATACGGAAAGTATCGA----GC--G--ATGT--TCTGATtgagggtattggtgtagtgtgggttttggtattgtt
gi|13 : ca--A---AT-CGAAAGCACAACGC-T-TG-GCCGT--TTTCG-TCT-GCTAAT--A---------------AT---T--TGC-----A-ATG--TAGGCGGAAATGAC
gi|19 : ataggaacaacgctac--A---AT-CGGAG---CATCGC-T-CG-GTCAT--TTCCG-CCA-AT--GT--A--CG--AAA------agcctaataagccacgtagat
gi|18 : gtta--A---AT-CGGAA---TATCGC-T-TG-GTCAT--TTCCG-CCT--C--GT--A--CG--
gi|1 : caatcggaacatcgct---AT-CGGAG---CACCAC-T-CG-GCATT--TTTCG-TCT-AA--AT-----TT--AAA------AT---T--TGC-----GAACG--TCAGCGGAAATGACCGA----GC--GTTG--T--TCCGAT
gi|13 : aagaaaacatcagttgaatggcaaaacagagtttcactcagcctgcaaagcaacagcggaaagca---AT-AGGAA---CAACGC-TACG-TCA-T--TTCCG-CCT-AC--AT-----TG--CAA------AT---T----------ATTAG--CAGACGAAAACGGCCAA----GC--ccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|8 : ---AC-CAGAA---CATCGC-T-CG-GCTAT--TCCCG-------------------------------------T-C------TACG--TAGGCGGTAATGACCGA----GC--G--A--T--gttgtgctttcgattagcctaataagccacgtagat
gi|5 : T-CGGAA---CATCGC-T-CG-GTA--------------------------------------AT---T--T-C-----GTACG--TAGGCGGAAATGACCGA----GC--G--ATGT--TCCGATattgcaattaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|17 : agtaatatgcgttaatCCG-ACT-AA--GT--A--CG--CAAT-----AA---T--T-C-----GAACG--AAGGCGGAAATGGCCGA----GC--G--ATGT--TCCGATtacgcttcgttaccacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|18 : --CG--GAAC-----AT---CGCT-C-----GTACG--AGG-CGGAAATGACCAA----GC--GATA--T--TCCGATtg
gi|19 : caat------AT---T--T-C-----GTACA--TTGGCGGAAATGACCGA----GC--G--A--TGCTCCGATt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA
Alignments
lowQualScore : 1 22 2222 11 666666666666666666666666666666 111111 4444444444444444444444444444444444
lowQualScore : 3 00 8888 7 11 555555555555555555555555555555 1 4 8 8 4 1 222222 4 33 1 1 6666666666666666666666666666666666 66666 333
lowQualScore : . .. .... . .. .............................. . . . . . . ...... . .. . . .................................. ..... ...
lowQualScore : 3 00 3333 3 00 000000000000000000000000000000 0 4 9 9 0 4 888888 7 22 6 6 7777777777777777777777777777777777 55555 999
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACAN-CTANTCGC--AATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGA------AACGC--AATCGGAACATCGCTCGGCCATTTCCGCCTACGTN-----CGGAA------AT---T--TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
Reference ( family-6132 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCGCGCAAACANNCTANTCGT--AATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCAA------AACGC--AATCGGAACATCGCTCGGCCATTTCCGCCTACGTA-----CGGAA------AT---T--TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
gi|1 : C-A-CT-CAGC-CTGCAAAGCAACAGCGGAAAGC--AATCGGAACAACGCTCGGTCATTTCCGCTGACGTT-----CGCAA------AT---T--TTA-----AATT-TAGACGAAAAATGCCGAGTGGTG---CTCCGAT
gi|10 : aagaaaacatcagttgaatggcaaaacagagttt-CTAC--ACCAA------TACCCTCAATCGGAACACCGCTCGGCCATTTCCGTAAACGTT-----C-GAA------ATAAAT--TCG-----TATA-T--------ATGGCCGAGCGATG---TTTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|11 : aC--AATTGGAACATCTCTCGGCCATTTCCGCTTACATT----------------AT---T--TGG-----TACG-TTGGCGGAAATGGCCGAGTGATG---TTCCGATtgtgggttttggtattgtt
gi|12 : tccaaaagatacttgtcttatataactacaC-A-TT-CCGGACAACGTAT----------GCGC--AATTGGAACATCGCTCGG-------------------------AA------AT-------CG-----AACG-TTTACGAAAATGGCCGAGCGGTA---TTTCGATa
gi|13 : ggcaaatgtctATAGGAACAACGCTACGTCATTTCCGCCTACAT------TGCAA------AT---TA-T-------TA-G-CAGACGAAAACGGCCAAGCGTTGTGCTTTCGATtgacttatgcggaaat
gi|14 : C--AATAGGAATATTGCTCAGCCATTTCCGT---------------AA------A--------CG-----TTCA--------AAATGGCCGAGCGATG---TTCCGATtagcctaataagccacgtagat
gi|15 : agtgtgagttaacttctttttaaC--AATCAGAACATCGCTCGATACTTTCCGTATACTTA-----CGT-T------AT---T--TCT-----TACGTTATGCGGAAATGATCGAGAGATA---CTGCAATtgttctttttaag
gi|17 : C--AATCGGAACATCGCTCGGCCATTTCCGCCTTCGTT-----C-GAATT----AT---T--GCG-----TACT-TAGTCGGt
gi|18 : C--AATCGGAACATCGCTCG
gi|18 : -----CGGAAC-----AT---CGCTCG-----TACG--AGGCGGAAATGACCAAGCGATA---TTCCGATtacgaggcggaaatgaccaagcgatattccgatt
gi|19 : caat------AT---T--TCG-----TACA-TTGGCGGAAATGACCGAGCGATG---CTCCGATt
gi|2 : gttTGCTA-TTTGGA--ATGGTGAAATTAAAACGA--AATAAAT-ATTACGCA--CAG-CTGCTTGT--AATCTGAACATCGCTCAGCC-A-TT-CCGC-CTACGTACCAA------AACAC--AATCGGAACATCGCTCGGCAATTTCCGACTACATA-----CGGAA------AT---T--TCA-----TACG-TGGACGGAAATGGCCGAGCAA-----TTCCGATt
gi|3 : tcgcaaaaactggactcattaaacaaaacgcgt-A-TT-CTGA-C-ACG-ACCAA------TTCTC--AGTCGGAATTTCGCTCGGCCATTTCCGCTTACGAATTCTTCG-AA------AT---A--ACG-----CACA-TGGGCGGAAATGGCCGAGCGATG---TTCCTAT
gi|3 : gttACAACTAA---AT-ATC---CAAGAAA--TGGTC-C--ACTCGGAATAACGCTCGTCC-A-TTTCCGC-CCATGT--CGA------AGAAA--AATAGGAACATCGCTCGGCCATTTCCGCCCATGTG-----CGT-T------AT---T--TCGAAGAATTCG-TAAGCGGAAATGGCCGAGCGAAA---TTCCGAttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|4 : gttattctgacacgaccaattctcagA------AAC-C--AATTGGAACAGCACTCGGCCATTTCCGCCTGCGTT-----CGG---------T----------------CG-TAGGCGATAACGGCCGAGAGATG---TTCCGATagttacaaaaggttttc
gi|4 : caTGCAACTATACAACATAAT----T-GAAATAG--AA---A--------CAAAC----------C--AATTGGAACAGCACTCGGCC-ATTT-CCGC-CTGCGTgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|5 : caatcggaacatctctcggccgttatcgcctacgaccgaGTAACGA------AGCGT--AATCGGAACATCGCTCGGTCATTTCCGCCTACGTA-----C-GAA------AT---T---------------------------ACCGAGCGATG---TTCCGAaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|6 : agtaatatgcgttaatA--AA---GTCATCGCGTA--CATCCTACTTGTTCAATCGGAACATTGCTCGGTC-ATTT-CCGC-CTTCGTACGAA------AAcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|6 : atttggtatttgtC--AATCGGAACATTGCTCGGTCATTTCCGCCTTCGTA-----CGAAA------A-------TCG-----AACG-AATGCGGAATTGGCCGAACGATG---TTCCGATtcgaacgaatgcggaattggccgaacgatgttccgattgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-AT-ATGCAAACAAG-TAATC----AATCGGAACATCGTTCGGCCAA-TT-CCGC-ATTCGTtgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|7 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcgaACGC--AATCGGAACATCGCTCGGTCATTTACGTAAACGTT-----TGAAACAAATCAT---T--CCG-----AACA-TTTACGGAAATTGCCGAGTGATG---TTCCGATg
gi|8 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattg--AATTGCAATATCGCTCGGTCATTACCGCCTA--------------------------------------CG-TAGACGGGAATAGCCGAGCGATG---TTCTGGTt
gi|8 : GTAAACATATTAATTGC--AAT------ATCGCTCGGTC-A-TTACCGC-CTACGTAaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|9 : accagaacatcgctcggctattcccgtcC--AATCGGAACATCGTTGGACCGTTTCCACCTAC--A-----C----------AT---T--TCG-----TACG-GAGGCAGAAATACCAAAGTGGCG---TTCCGATtttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA
Alignments
lowQualScore : 1 22 2222 11 555555555555555555555555555555 1 11 44444444444444444444444444444444444
lowQualScore : 3 00 8888 7 11 888888888888888888888888888888 4 2 8 444 00 666 5555 1 66666666666666666666666666666666666 444 0 333
lowQualScore : . .. .... . .. .............................. . . . ... .. ... .... . ................................... ... . ...
lowQualScore : 3 00 3333 3 00 111111111111111111111111111111 0 0 0 111 77 000 0000 1 22222222222222222222222222222222222 888 3 999
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTCGGAA------AT---T--TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
Reference ( family-6132 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TANTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TNCGGAA------AT---T--TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
gi|1 : CGGAAAGCAATCGGAACAACGCTCGGTCATTTCCG----CTGACG-----TTCGCAA------AT---T--TTA-----AATT-TAGACGAAAAATGCCGAGTGGTG---CTCCGAT
gi|10 : aagaaaacatcagttgaatggcaaaacagagtttcactcagcctgcaaagcaacagCAATCGGAACACCGCTCGGCCATTTCCG----TAAACG-----TTC-GAA------ATAAAT--TCG-----TATA-T--------ATGGCCGAGCGATG---TTTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|10 : aACACCAATACCCT--CAATCGGAACACCGCTCGGCC-ATTT-CCGT-AAACGT-TCGAAAagggtattggtgtagtgtgggttttggtattgtt
gi|11 : aatcgaaacatcgctcggccatatatacgaatttaCAATTGGAACATCTCTCGGCCATTTCCG----CTTACA-----TT-----------AT---T--TGG-----TACG-TTGGCGGAAATGGCCGAGTGATG---TTCCGATagtgtgggttttggtattgtt
gi|12 : tccaaaagatacttgtcttatataactacaC-A-TT-CCGGACAACGTAT----GCGCAATTGGAACATCGCTCGG-----------------------------AA------AT-------CG-----AACG-TTTACGAAAATGGCCGAGCGGTA---TTTCGATa
gi|13 : ggcaaatgtctATAGGAACAACGCTACGTCATTTCCG----CCTACA-----TT-GCAA------AT---TA-T-------TA-G-CAGACGAAAACGGCCAAGCGTTGTGCTTTCGATtgacttatgcggaaat
gi|14 : CAATAGGAATATTGCTCAGCCATTTCCG----TAAACG-----TTCA-------------------------------------AAATGGCCGAGCGATG---TTCCGATtagcctaataagccacgtagat
gi|15 : agtgtgagttaacttctttttaaCAATCAGAACATCGCTCGATACTTTCCGTATACTTACG-----TT-----------AT---T--TCT-----TACGTTATGCGGAAATGATCGAGAGATA---CTGCAATtgttctttttaag
gi|17 : CAATCGGAACATCGCTCGGCCATTTCCG----CCTTCG-----TTC-GAATT----AT---T--GCG-----TACT-TAGTCGGt
gi|18 : CAATCGGAACATCGCTCG
gi|18 : CGGAAC-----AT---CGCTCG-----TACG--AGGCGGAAATGACCAAGCGATA---TTCCGATtacgaggcggaaatgaccaagcgatattccgatt
gi|19 : caat------AT---T--TCG-----TACA-TTGGCGGAAATGACCGAGCGATG---CTCCGATt
gi|2 : gttTGCTA-TTTGGA--ATGGTGAAATTAAAACGA--AATAAAT-ATTACGCA--CAGC--TGCTTG--TAATCTGAACATCGCTCAGCC-A-TT-CCGC-CTACGTACCAAAACACAATCGGAACATCGCTCGGCAATTTCCG----ACTACA-----TACGGAA------AT---T--TCA-----TACG-TGGACGGAAATGGCCGAGCAA-----TTCCGATt
gi|3 : tcgcaaaaactggactcattaaacaaaacgcgt-A-TT-CTGA-C-ACG-ACCAATTCTCAGTCGGAATTTCGCTCGGCCATTTCCG----CTTACGAATTCTTCG-AA------AT---A--ACG-----CACA-TGGGCGGAAATGGCCGAGCGATG---TTCCTAT
gi|3 : gttACAACTAA---AT-ATC---CAAGAAA---TGGTC---CACTCGGAATAACGCTCGTCC-A-TTTCCGC-CCATGT--CGAAGAAAAATAGGAACATCGCTCGGCCATTTCCG----CCCATG-----TGCGT-T------AT---T--TCGAAGAATTCG-TAAGCGGAAATGGCCGAGCGAAA---TTCCGAttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|4 : gttattctgacacgaccaattctcagAAAC-CAATTGGAACAGCACTCGGCCATTTCCG----CCTGCG-----TTCGG---------T----------------CG-TAGGCGATAACGGCCGAGAGATG---TTCCGATagttacaaaaggttttc
gi|4 : caTGCAACTATACAACATAAT----T-GAAATAG--AA---A--------CAAAC-------------CAATTGGAACAGCACTCGGCC-ATTT-CCGC-CTGCGTgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|5 : caatcggaacatctctcggccgttatcgcctacgaccgaGTAACGAAGCGTAATCGGAACATCGCTCGGTCATTTCCG----CCTACG-----TAC-GAA------AT---T---------------------------ACCGAGCGATG---TTCCGAaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|6 : agtaatatgcgttaatA--AA---GTCATCGCGTA--CATCC-TACTTGTTCAATCGGAACATTGCTCGGTC-ATTT-CCGC-CTTCGTA-CGAA----AATCGAAcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|6 : atttggtatttgtCAATCGGAACATCGTTCGGCCAATTCCG----CATTCG-----TTCG--A------TT---T--TCG-----TACG-AAGGCGGAAATGACCGAGCAATG---TTCCGATcgaatgcggaattggccgaacgatgttccgattgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-AT-ATGCAAACAAG--TAAT----CAATCGGAACATCGTTCGGCCAA-TT-CCGC-ATTCGTattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|7 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcga-ATCACG--GACATT--GA--CG--CAATCGGAACATCGCTCGGTC-A-TT-------TACGTAg
gi|7 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgACGCAATCGGAACATCGCTCGGTCATTTACG----TAAACG-----TTTGAAACAAATCAT---T--CCG-----AACA-TTTACGGAAATTGCCGAGTGATG---TTCCGATaacgtttgaaacaaatcattccgaacatttacggaaattgccgagtgatgttccgatt
gi|8 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgAATTGCAATATCGCTCGGTCATTACCG----CCT--------------------------------------ACG-TAGACGGGAATAGCCGAGCGATG---TTCTGGTt
gi|8 : T-ATAAAGTAAACA----TATT-----AATTGCAATATCGCTCGGTC-A-TTACCGC-CTACGTAaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|9 : accagaacatcgctcggctattcccgtcCAATCGGAACATCGTTGGACCGTTTCCA----CCTAC-----------AC------AT---T--TCG-----TACG-GAGGCAGAAATACCAAAGTGGCG---TTCCGATagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA
Alignments
lowQualScore : 1 22 2222 11 555555555555555555555555555555 1 11 44444444444444444444444444444444444444444
lowQualScore : 3 00 8888 7 11 888888888888888888888888888888 4 2 8 444 00 666 5555 1 66666666666666666666666666666666666666666 0 333
lowQualScore : . .. .... . .. .............................. . . . ... .. ... .... . ......................................... . ...
lowQualScore : 3 00 3333 3 00 111111111111111111111111111111 0 0 0 111 77 000 0000 1 33333333333333333333333333333333333333333 3 999
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTCG-AA------AT---T--TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
Reference ( family-6132 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTCGGAA------AT---T--TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
gi|1 : CGGAAAGCAATCGGAACAACGCTCGGTCATTTCCG----CTGACG-----TTCGCAA------AT---T--TTA-----AATT-TAGACGAAAAATGCCGAGTGGTG---CTCCGAT
gi|10 : aagaaaacatcagttgaatggcaaaacagagtttcactcagcctgcaaagcaacagCAATCGGAACACCGCTCGGCCATTTCCG----TAAACG-----TTC-GAA------ATAAAT--TCG-----TATA-T--------ATGGCCGAGCGATG---TTTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|10 : aACACCAATACCCT--CAATCGGAACACCGCTCGGCC-ATTT-CCGT-AAACGT-TCGAAAagggtattggtgtagtgtgggttttggtattgtt
gi|11 : aatcgaaacatcgctcggccatatatacgaatttaCAATTGGAACATCTCTCGGCCATTTCCG----CTTACA-----TT-----------AT---T--TGG-----TACG-TTGGCGGAAATGGCCGAGTGATG---TTCCGATagtgtgggttttggtattgtt
gi|12 : tccaaaagatacttgtcttatataactacaC-A-TT-CCGGACAACGTAT----GCGCAATTGGAACATCGCTCGG-----------------------------AA------AT-------CG-----AACG-TTTACGAAAATGGCCGAGCGGTA---TTTCGATa
gi|13 : ggcaaatgtctATAGGAACAACGCTACGTCATTTCCG----CCTACA-----TT-GCAA------AT---TA-T-------TA-G-CAGACGAAAACGGCCAAGCGTTGTGCTTTCGATtgacttatgcggaaat
gi|14 : CAATAGGAATATTGCTCAGCCATTTCCG----TAAACG-----TTCA-------------------------------------AAATGGCCGAGCGATG---TTCCGATtagcctaataagccacgtagat
gi|15 : agtgtgagttaacttctttttaaCAATCAGAACATCGCTCGATACTTTCCGTATACTTACG-----TT-----------AT---T--TCT-----TACGTTATGCGGAAATGATCGAGAGATA---CTGCAATtgttctttttaag
gi|17 : CAATCGGAACATCGCTCGGCCATTTCCG----CCTTCG-----TTC-GAATT----AT---T--GCG-----TACT-TAGTCGGt
gi|18 : TCGGAAC-----AT---CGCTCG-----TACG--AGGCGGAAATGACCAAGCGATA---TTCCGAT
gi|19 : caa------AT---T--TCG-----TACA-TTGGCGGAAATGACCGAGCGATG---CTCCGATt
gi|2 : gttTGCTA-TTTGGA--ATGGTGAAATTAAAACGA--AATAAAT-ATTACGCA--CAGC--TGCTTG--TAATCTGAACATCGCTCAGCC-A-TT-CCGC-CTACGTACCAAAACACAATCGGAACATCGCTCGGCAATTTCCG----ACTACA-----TACGGAA------AT---T--TCA-----TACG-TGGACGGAAATGGCCGAGCAA-----TTCCGATt
gi|3 : tcgcaaaaactggactcattaaacaaaacgcgt-A-TT-CTGA-C-ACG-ACCAATTCTCAGTCGGAATTTCGCTCGGCCATTTCCG----CTTACGAATTCTTCG-AA------AT---A--ACG-----CACA-TGGGCGGAAATGGCCGAGCGATG---TTCCTAT
gi|3 : gttACAACTAA---AT-ATC---CAAGAAA---TGGTC---CACTCGGAATAACGCTCGTCC-A-TTTCCGC-CCATGT--CGAAGAAAAATAGGAACATCGCTCGGCCATTTCCG----CCCATG-----TGCGT-T------AT---T--TCGAAGAATTCG-TAAGCGGAAATGGCCGAGCGAAA---TTCCGAttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|4 : gttattctgacacgaccaattctcagAAAC-CAATTGGAACAGCACTCGGCCATTTCCG----CCTGCG-----TTCGG---------T----------------CG-TAGGCGATAACGGCCGAGAGATG---TTCCGATagttacaaaaggttttc
gi|4 : caTGCAACTATACAACATAAT----T-GAAATAG--AA---A--------CAAAC-------------CAATTGGAACAGCACTCGGCC-ATTT-CCGC-CTGCGTgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|5 : caatcggaacatctctcggccgttatcgcctacgaccgaGTAACGAAGCGTAATCGGAACATCGCTCGGTCATTTCCG----CCTA-----------------------------CG-----TAC--------GAAATTACCGAGCGATG---TTCCGAaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|6 : agtaatatgcgttaatA--AA---GTCATCGCGTA--CATCC-TACTTGTTCAATCGGAACATTGCTCGGTC-ATTT-CCGC-CTTCGTA-CGAA----AATCGAAcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|6 : atttggtatttgtCAATCGGAACATCGTTCGGCCAATTCCG----CATTCG-----TTCG--A------TT---T--TCG-----TACG-AAGGCGGAAATGACCGAGCAATG---TTCCGATcgaatgcggaattggccgaacgatgttccgattgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-AT-ATGCAAACAAG--TAAT----CAATCGGAACATCGTTCGGCCAA-TT-CCGC-ATTCGTattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|7 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcga-ATCACG--GACATT--GAC--G--CAATCGGAACATCGCTCGGTC-A-TT-------TACGTAg
gi|7 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgACGCAATCGGAACATCGCTCGGTCATTTACG----TAAACG-----TTTGAAACAAATCAT---T--CCG-----AACA-TTTACGGAAATTGCCGAGTGATG---TTCCGATaacgtttgaaacaaatcattccgaacatttacggaaattgccgagtgatgttccgatt
gi|8 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgAATTGCAATATCGCTCGGTCATTACCG----CCTACG-----T----------------------------------AGACGGGAATAGCCGAGCGATG---TTCTGGTt
gi|8 : T-ATAAAGTAAACA----TATT-----AATTGCAATATCGCTCGGTC-A-TTACCGC-CTACGTAaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|9 : accagaacatcgctcggctattcccgtcCAATCGGAACATCGTTGGACCGTTTCCA----CCTAC-----------AC------AT---T--TCG-----TACG-GAGGCAGAAATACCAAAGTGGCG---TTCCGATagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA
Alignments
lowQualScore : 1 22 2222 11 555555555555555555555555555555 1 11 333333333333333333333333333333333333
lowQualScore : 3 00 8888 7 11 888888888888888888888888888888 4 2 8 444 00 666 5555 1 55555 000000000000000000000000000000000000 0 333
lowQualScore : . .. .... . .. .............................. . . . ... .. ... .... . ..... .................................... . ...
lowQualScore : 3 00 3333 3 00 111111111111111111111111111111 0 0 0 111 77 000 0000 1 99999 444444444444444444444444444444444444 3 999
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTC-G-AA-------AT---T-TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
Reference ( family-6132 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTC-G-AA-------AT---T-TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
gi|1 : CGGAAAGCAATCGGAACAACGCTCGGTCATTTCCG----CTGACG-----TTC-GCAA-------AT---T-TTA-----AATT-TAGACGAAAAATGCCGAGTGGTG---CTCCGAT
gi|10 : aagaaaacatcagttgaatggcaaaacagagtttcactcagcctgcaaagcaacagCAATCGGAACACCGCTCGGCCATTTCCG----TAAACG-----TTC-G-AA-------ATAAAT-TCG-----TATA-T--------ATGGCCGAGCGATG---TTTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|10 : aACACCAATACCCT--CAATCGGAACACCGCTCGGCC-ATTT-CCGT-AAACGT-TCGAAAagggtattggtgtagtgtgggttttggtattgtt
gi|11 : aatcgaaacatcgctcggccatatatacgaatttaCAATTGGAACATCTCTCGGCCATTTCCG----CTTACA-----TT-------------AT---T-TGG-----TACG-TTGGCGGAAATGGCCGAGTGATG---TTCCGATagtgtgggttttggtattgtt
gi|12 : tccaaaagatacttgtcttatataactacaC-A-TT-CCGGACAACGTAT----GCGCAATTGGAACATCGCTCGG------------------------------AA-------AT------CG-----AACG-TTTACGAAAATGGCCGAGCGGTA---TTTCGATa
gi|13 : ggcaaatgtctATAGGAACAACGCTACGTCATTTCCG----CCTACA-----TTG-C-AA-------AT---TAT-------TA-G-CAGACGAAAACGGCCAAGCGTTGTGCTTTCGATtgacttatgcggaaat
gi|14 : CAATAGGAATATTGCTCAGCCATTTCCG----TAAACG-----TTC--------------------------------------AAAATGGCCGAGCGATG---TTCCGATtagcctaataagccacgtagat
gi|15 : agtgtgagttaacttctttttaaCAATCAGAACATCGCTCGATACTTTCCGTATACTTACG-----TT-------------AT---T-TCT-----TACGTTATGCGGAAATGATCGAGAGATA---CTGCAATtgttctttttaag
gi|17 : CAATCGGAACATCGCTCGGCCATTTCCG----CCTTCG-----TTC-G-AATT-----AT---T-GCG-----TACT-TAGTCGGt
gi|18 : CAATCGGAACATCGCTCG
gi|18 : -TCG-----TACG--AGGCGGAAATGACCAAGCGATA---TTCCGATtacgaggcggaaatgaccaagcgatattccgatt
gi|19 : caatcggaacatcgc-------AT---T-TCG-----TACA-TTGGCGGAAATGACCGAGCGATG---CTCCGATt
gi|2 : gttTGCTA-TTTGGA--ATGGTGAAATTAAAACGA--AATAAAT-ATTACGCA--CAGC--TGCTTG--TAATCTGAACATCGCTCAGCC-A-TT-CCGC-CTACGTACCAAAACACAATCGGAACATCGCTCGGCAATTTCCG----ACTACA-----TACGG-AA-------AT---T-TCA-----TACG-TGGACGGAAATGGCCGAGCAA-----TTCCGATt
gi|3 : tcgcaaaaactggactcattaaacaaaacgcgt-A-TT-CTGA-C-ACG-ACCAATTCTCAGTCGGAATTTCGCTCGGCCATTTCCG----CTTACGAATTCTTC-G-AA-------AT---A-ACG-----CACA-TGGGCGGAAATGGCCGAGCGATG---TTCCTAT
gi|3 : gttACAACTAA---AT-ATC---CAAGAAA---TGGTC---CACTCGGAATAACGCTCGTCC-A-TTTCCGC-CCATGT--CGAAGAAAAATAGGAACATCGCTCGGCCATTTCCG----CCCATG-----TGC-G-TT-------AT---T-TCGAAGAATTCG-TAAGCGGAAATGGCCGAGCGAAA---TTCCGAttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|4 : gttattctgacacgaccaattctcagAAAC-CAATTGGAACAGCACTCGGCCATTTCCG----CCTGCG-----TTC-G-------------------G-----T-CG-TAGGCGATAACGGCCGAGAGATG---TTCCGATagttacaaaaggttttc
gi|4 : caTGCAACTATACAACATAAT----T-GAAATAG--AA---A--------CAAAC-------------CAATTGGAACAGCACTCGGCC-ATTT-CCGC-CTGCGTgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|5 : caatcggaacatctctcggccgttatcgcctacgaccgaGTAACGAAGCGTAATCGGAACATCGCTCGGTCATTTCCG----CCTACG-----TAC-G-AA-------AT---T--------------------------ACCGAGCGATG---TTCCGAaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|6 : agtaatatgcgttaatA--AA---GTCATCGCGTA--CATCC-TACTTGTTCAATCGGAACATTGCTCGGTC-ATTT-CCGC-CTTCGTA-CGAA----AATCGAAcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|6 : atttggtatttgtCAATCGGAACATCGTTCGGCCAATTCCG----CATTCG-----TTC-G-AT--------T---T-TCG-----TACG-AAGGCGGAAATGACCGAGCAATG---TTCCGATcgaatgcggaattggccgaacgatgttccgattgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-AT-ATGCAAACAAG--TAAT----CAATCGGAACATCGTTCGGCCAA-TT-CCGC-ATTCGTattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|7 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcga-ATCACG--GACATT--GAC--G--CAATCGGAACATCGCTCGGTC-A-TT-------TACGTAg
gi|7 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgACGCAATCGGAACATCGCTCGGTCATTTACG----TAAACG-----TTT-G-AAACAAATCAT---T-CCG-----AACA-TTTACGGAAATTGCCGAGTGATG---TTCCGATaacgtttgaaacaaatcattccgaacatttacggaaattgccgagtgatgttccgatt
gi|8 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgAATTGCAATATCGCTCGGTCATTACCG----CCTACG-----T-----------------------------------AGACGGGAATAGCCGAGCGATG---TTCTGGTt
gi|8 : T-ATAAAGTAAACA----TATT-----AATTGCAATATCGCTCGGTC-A-TTACCGC-CTACGTAaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|9 : accagaacatcgctcggctattcccgtcCAATCGGAACATCGTTGGACCGTTTCCA----CCTAC------------AC-------AT---T-TCG-----TACG-GAGGCAGAAATACCAAAGTGGCG---TTCCGATagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA
Alignments
lowQualScore : 1 22 2222 11 555555555555555555555555555555 1 11 333333333333333333333333333333333333
lowQualScore : 3 00 8888 7 11 888888888888888888888888888888 4 2 8 444 00 666 5555 1 55555 000000000000000000000000000000000000 0 333
lowQualScore : . .. .... . .. .............................. . . . ... .. ... .... . ..... .................................... . ...
lowQualScore : 3 00 3333 3 00 111111111111111111111111111111 0 0 0 111 77 000 0000 1 99999 444444444444444444444444444444444444 3 999
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTC-G-AA-------AT---T-TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
Reference ( family-6132 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTC-G-AA-------AT---T-TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
gi|1 : CGGAAAGCAATCGGAACAACGCTCGGTCATTTCCG----CTGACG-----TTC-GCAA-------AT---T-TTA-----AATT-TAGACGAAAAATGCCGAGTGGTG---CTCCGAT
gi|10 : aagaaaacatcagttgaatggcaaaacagagtttcactcagcctgcaaagcaacagCAATCGGAACACCGCTCGGCCATTTCCG----TAAACG-----TTC-G-AA-------ATAAAT-TCG-----TATA-T--------ATGGCCGAGCGATG---TTTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|10 : aACACCAATACCCT--CAATCGGAACACCGCTCGGCC-ATTT-CCGT-AAACGT-TCGAAAagggtattggtgtagtgtgggttttggtattgtt
gi|11 : aatcgaaacatcgctcggccatatatacgaatttaCAATTGGAACATCTCTCGGCCATTTCCG----CTTACA-----TT-------------AT---T-TGG-----TACG-TTGGCGGAAATGGCCGAGTGATG---TTCCGATagtgtgggttttggtattgtt
gi|12 : tccaaaagatacttgtcttatataactacaC-A-TT-CCGGACAACGTAT----GCGCAATTGGAACATCGCTCGG------------------------------AA-------AT------CG-----AACG-TTTACGAAAATGGCCGAGCGGTA---TTTCGATa
gi|13 : ggcaaatgtctATAGGAACAACGCTACGTCATTTCCG----CCTACA-----TTG-C-AA-------AT---TAT-------TA-G-CAGACGAAAACGGCCAAGCGTTGTGCTTTCGATtgacttatgcggaaat
gi|14 : CAATAGGAATATTGCTCAGCCATTTCCG----TAAACG-----TTC--------------------------------------AAAATGGCCGAGCGATG---TTCCGATtagcctaataagccacgtagat
gi|15 : agtgtgagttaacttctttttaaCAATCAGAACATCGCTCGATACTTTCCGTATACTTACG-----TT-------------AT---T-TCT-----TACGTTATGCGGAAATGATCGAGAGATA---CTGCAATtgttctttttaag
gi|17 : CAATCGGAACATCGCTCGGCCATTTCCG----CCTTCG-----TTC-G-AATT-----AT---T-GCG-----TACT-TAGTCGGt
gi|18 : CAATCGGAACATCGCTCG
gi|18 : -TCG-----TACG--AGGCGGAAATGACCAAGCGATA---TTCCGATtacgaggcggaaatgaccaagcgatattccgatt
gi|19 : caatcggaacatcgc-------AT---T-TCG-----TACA-TTGGCGGAAATGACCGAGCGATG---CTCCGATt
gi|2 : gttTGCTA-TTTGGA--ATGGTGAAATTAAAACGA--AATAAAT-ATTACGCA--CAGC--TGCTTG--TAATCTGAACATCGCTCAGCC-A-TT-CCGC-CTACGTACCAAAACACAATCGGAACATCGCTCGGCAATTTCCG----ACTACA-----TACGG-AA-------AT---T-TCA-----TACG-TGGACGGAAATGGCCGAGCAA-----TTCCGATt
gi|3 : tcgcaaaaactggactcattaaacaaaacgcgt-A-TT-CTGA-C-ACG-ACCAATTCTCAGTCGGAATTTCGCTCGGCCATTTCCG----CTTACGAATTCTTC-G-AA-------AT---A-ACG-----CACA-TGGGCGGAAATGGCCGAGCGATG---TTCCTAT
gi|3 : gttACAACTAA---AT-ATC---CAAGAAA---TGGTC---CACTCGGAATAACGCTCGTCC-A-TTTCCGC-CCATGT--CGAAGAAAAATAGGAACATCGCTCGGCCATTTCCG----CCCATG-----TGC-G-TT-------AT---T-TCGAAGAATTCG-TAAGCGGAAATGGCCGAGCGAAA---TTCCGAttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|4 : gttattctgacacgaccaattctcagAAAC-CAATTGGAACAGCACTCGGCCATTTCCG----CCTGCG-----TTC-G-------------------G-----T-CG-TAGGCGATAACGGCCGAGAGATG---TTCCGATagttacaaaaggttttc
gi|4 : caTGCAACTATACAACATAAT----T-GAAATAG--AA---A--------CAAAC-------------CAATTGGAACAGCACTCGGCC-ATTT-CCGC-CTGCGTgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|5 : caatcggaacatctctcggccgttatcgcctacgaccgaGTAACGAAGCGTAATCGGAACATCGCTCGGTCATTTCCG----CCTACG-----TAC-G-AA-------AT---T--------------------------ACCGAGCGATG---TTCCGAaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|6 : agtaatatgcgttaatA--AA---GTCATCGCGTA--CATCC-TACTTGTTCAATCGGAACATTGCTCGGTC-ATTT-CCGC-CTTCGTA-CGAA----AATCGAAcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|6 : atttggtatttgtCAATCGGAACATCGTTCGGCCAATTCCG----CATTCG-----TTC-G-AT--------T---T-TCG-----TACG-AAGGCGGAAATGACCGAGCAATG---TTCCGATcgaatgcggaattggccgaacgatgttccgattgattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-AT-ATGCAAACAAG--TAAT----CAATCGGAACATCGTTCGGCCAA-TT-CCGC-ATTCGTattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|7 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcga-ATCACG--GACATT--GAC--G--CAATCGGAACATCGCTCGGTC-A-TT-------TACGTAg
gi|7 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgACGCAATCGGAACATCGCTCGGTCATTTACG----TAAACG-----TTT-G-AAACAAATCAT---T-CCG-----AACA-TTTACGGAAATTGCCGAGTGATG---TTCCGATaacgtttgaaacaaatcattccgaacatttacggaaattgccgagtgatgttccgatt
gi|8 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgAATTGCAATATCGCTCGGTCATTACCG----CCTACG-----T-----------------------------------AGACGGGAATAGCCGAGCGATG---TTCTGGTt
gi|8 : T-ATAAAGTAAACA----TATT-----AATTGCAATATCGCTCGGTC-A-TTACCGC-CTACGTAaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
gi|9 : accagaacatcgctcggctattcccgtcCAATCGGAACATCGTTGGACCGTTTCCA----CCTAC------------AC-------AT---T-TCG-----TACG-GAGGCAGAAATACCAAAGTGGCG---TTCCGATagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
blockSeqs : C AC . T CT GTCATCGCGTACATCCTACTTGTT A T T ACA AT GCG TATA A AATTC TTGAAACAAATCATTCCGAACATT TGC
blockSeqs : . C . . . ATATATGCAAACAAGTAAT . T A CT AC ACA . T . GCGTTATTTCGAAGAATTCGTA .
blockSeqs : . ATATCCAAGAAATGGTC . . . CC AC TCT . C . TCGAAATAAATTCGTATAT .
blockSeqs : . ACAAAC . . . CT AA GAA . A . TCGAATTATTGCGTACTTA .
blockSeqs : . . . CT A GCG . T . ACGGAAATTTCATACGTG .
blockSeqs : . . . AT . ACG . C . TCGAAATAACGCACATG .
blockSeqs : . . . CT AC . C . TCGATTTTCGTACGAA .
blockSeqs : . . . C . . T . TGCAAATTATTAGCA .
blockSeqs : . . . T . C . TATTTCTTACGTTA .
blockSeqs : . C . ACATTTCGTACGGA .
blockSeqs : . C . TATTTGGTACGTT .
blockSeqs : . A . AAATCGAACGTT .
blockSeqs : . A . TCGGTCGTA .
blockSeqs : . C . ACGAAATT .
blockSeqs : . C . TC .
blockSeqs : . . . A .
blockSeqs : .
blockSeqCons : ATCCGAACAAGTT***************** AC TCGAATTATTCGTACGTA******************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AA---AT-ATCACGCAAACANC--TACTCG--CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTC-G-AA-------AT---T-TCG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAA--AAATCCGAACAAGTT-----------------CAATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCG----CCTACG-----TTCGAATTATTCGTACGTA------------------GGCGGAAATGGCCGAGCGATG---TTCCGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA
Alignments
lowQualScore : 1 22 2222 9999999999999999999999999999 555555555555555555555555555555555555555555
lowQualScore : 3 00 8888 3 1 1111111111111111111111111111 1 6 6 6 666 44 3 1 888888888888888888888888888888888888888888 0 333
lowQualScore : . .. .... . . ............................ . . . . ... .. . . .......................................... . ...
lowQualScore : 3 00 3333 2 2 8888888888888888888888888888 0 7 7 7 888 00 4 6 999999999999999999999999999999999999999999 3 999
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACGAAAT-A--ATN-CAAACAA--GT--NC----AATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAGCGCAATCGGAACATCGCTCGGCCATTTCCGCCTACG-----TT-----CG--AATT--A-TT-CG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
Reference ( family-6132 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAA-TATGCA-CATGGT----TTAAAACAAAA-----ATC-CGAACAA--GT--TC----AATCGGAACATCGCTCGGCC-A-TT-CCGC-CTACGTACCGAAACGCAATCGGAACATCGCTCGGCCATTTCCGCCTACG-----TT-----CG--AATT--A-TT-CG-----TACG-TAGGCGGAAATGGCCGAGCGATG---TTCCGAT
gi|1 : CGGAAAGCAATCGGAACAACGCTCGGTCATTTCCGCTGACG-----TT-----CGCAAAT-----TT-TA-----AATT-TAGACGAAAAATGCCGAGTGGTG---CTCCGAT
gi|10 : aagaaaacatcagttgaatggcaaaacagagtttcactcagcctgcaaagcaacagCAATCGGAACACCGCTCGGCCATTTCCGTAAACG-----TT-----CG--AAATAAA-TT-CG-----TATA-T--------ATGGCCGAGCGATG---TTTCGATccggcagacaagcgacactaagatttttcatcaccactctgtaatctaataacgtagaaatcattaaaa
gi|11 : aCAATTGGAACATCTCTCGGCCATTTCCGCTTAC------------------ATT--A-TT-TGG----TACG-TTGGCGGAAATGGCCGAGTGATG---TTCCGATagggtattggtgtagtgtgggttttggtattgtt
gi|12 : tccaaaagatacttgtcttatataactacaC-A-TT-CCGGACAACGTAT----GCGCAATTGGAACATCGCTCGG----------------------------A--AAT--------CG-----AACG-TTTACGAAAATGGCCGAGCGGTA---TTTCGATa
gi|13 : ggcaaatgtctATAGGAACAACGCTACGTCATTTCCGCCTACA-----TTG----CA--AATT--A-T---------TA-G-CAGACGAAAACGGCCAAGCGTTGTGCTTTCGATtgacttatgcggaaat
gi|14 : CAATAGGAATATTGCTCAGCCATTTCCGTAAACG-----TT-----C--------------------------------AAAATGGCCGAGCGATG---TTCCGATtagcctaataagccacgtagat
gi|15 : agtgtgagttaacttctttttaaCAATCAGAACATCGCTCGATACTTTCCGTATACT-----TA-----CG----TT--ATTT-CT-----TACGTTATGCGGAAATGATCGAGAGATA---CTGCAATtgttctttttaag
gi|17 : CAATCGGAACATCGCTCGGCCATTTCCGCCTTCG-----TT-----CG--AATT--A-TTGCG-----TACT-TAGTCGGt
gi|18 : C----AATCGGAACATCGCTCG
gi|18 : T-CG-----TACG--AGGCGGAAATGACCAAGCGATA---TTCCGATtacgaggcggaaatgaccaagcgatattccgatt
gi|19 : caatcggaacatcgcTT--A-TTTCG-----TACA-TTGGCGGAAATGACCGAGCGATG---CTCCGATt
gi|2 : gTGCTA-TTTGGA--ATGGTGAAATTAAAACGAAATAAATATTACGCACAG--CT--GCTTGTAATCTGAACATCGCTCAGCC-A-TT-CCGC-CTACGTACCAAAACACAATCGGAACATCGCTCGGCAATTTCCGACTACA-----TA-----CGGAAAT-----TT-CA-----TACG-TGGACGGAAATGGCCGAGCAA-----TTCCGATt
gi|3 : tcgcaaaaactggactcattaaacaaaacgcgt-A-TT-CTGA-C-ACG-ACCAATTCTCAGTCGGAATTTCGCTCGGCCATTTCCGCTTACGAATTCTT-----CG--AAAT--A-A--CG-----CACA-TGGGCGGAAATGGCCGAGCGATG---TTCCTAT
gi|3 : gttTACAACTAAAT----ATC-CAAGAAATGGT--CC----ACTCGGAATAACGCTCGTCC-A-TTTCCGC-CCATGT--CGAAGAAAAATAGGAACATCGCTCGGCCATTTCCGCCCATG-----TG-----CG----TT--ATTT-CGAAGAATTCG-TAAGCGGAAATGGCCGAGCGAAA---TTCCGAttttcttcgacatgggcggaaatggacgagcgttattccgagtggaccatttcttggatatttagttgtagttacaaaaggttttc
gi|4 : gttattctgacacgaccaattctcagAAAC-CAATTGGAACAGCACTCGGCCATTTCCGCCTGCG-----TT-----CG--------------G-----T-CG-TAGGCGATAACGGCCGAGAGATG---TTCCGATgttacaaaaggttttc
gi|4 : caTGCAACTATACAACATAAT----T-GAAATAGAA-----A---CAAAC---------C----AATTGGAACAGCACTCGGCC-ATTT-CCGC-CTGCGTgtttctatttcaattatgttgtatagttgcaaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|5 : caatcggaacatctctcggccgttatcgcctacgaccgaGTAACGAAGCGTAATCGGAACATCGCTCGGTCATTTCCGCCTA-----------------------------CG-----TAC--------GAAATTACCGAGCGATG---TTCCGAaattttatgttaaatctttgccttgaaaatgtatttagagaacactctagctgaataaaatgttata
gi|6 : agtaatatgcgttaatCAATCGGAACATCGTTCGGCCAATTCCGCATTCG-----TT-----CG--A-TT----TT-CG-----TACG-AAGGCGGAAATGACCGAGCAATG---TTCCGATcacaaacttaattttgttagaagatcaatatattatcatctacatgacatatatttagatctaactgatacataatgatgttat
gi|6 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaTGCAA-TATGCA-CATGGT----TTAAAACAAAAATAT-ATG-CAAACAA--GTAATC----AATCGGAACATCGTTCGGCCAA-TT-CCGC-ATTCGTattacttgtttgcatatatttttgttttaaaccatgtgcatattgcag
gi|7 : atttggtatttgtaaagtcatcgcgtacatcctacttgttcaatcggaacattgctcggtcatttccgccttcgtacgaaaatcgaACGCAATCGGAACATCGCTCGGTCATTTACGTAAACG-----TTTGAAACA--AATC--A-TTCCG-----AACA-TTTACGGAAATTGCCGAGTGATG---TTCCGATg
gi|8 : taatttattattcatatatctaagaaaatattatgagtggcacgtgtcttagtcagctgatcacggacattgAATTGCAATATCGCTCGGTCATTACCGCCTACG-----T----------------------------------AGACGGGAATAGCCGAGCGATG---TTCTGGTt
gi|9 : CAATCGGAACATCGTTGGACCGTTTCCACCTACA-----C-----------AT-----TT-CG-----TACG-GAGGCAGAAATACCAAAGTGGCG---TTCCGATaatatgtttactttataagtaaaatggttgtttgttcagtctggcacgtattcaattacactgtctcataaacaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACGCTTCGTTACAACAAACTTAATTTCATTAGAATATCAATAAATGATTTATACCCTAGACATGAT
Unaligned ( gi|20 ): TGACTGCTGACGATAGTAGGCGTGGGTTAACTTCCCGACTAGA