lowQualScore : 1 111 1111 1 22 4 1 1 22 1 11111111 111111111 1 111 1 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 111 33333 111 1 1 8888888888 111111111 1 1
lowQualScore : 6 1 1 1 6 3 3 2 888 2 77 3333 3 2 8888 88 6 3 77 0 99 6 2 1 1 4 5 3 2 88 77 3 3 7 5 3 33333333 666 666 6 666666666 55 4 5 888 6 4 00000 44 0 33 0 1 4 66 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 333333 5 77 3 777 555 33 8 2 2 2 66 6 0 5 44444 0 6 777 6 6 0 44 4 9 5 5 3 3 4 3 6 33 0 4444444444 666666666 0 2 9 44 2 4 4 2 8888 6 0 2 555 1 3 2 33 5 5
lowQualScore : . . . . . . . . ... . .. .... . . .... .. . . .. . .. . . . . . . . . .. .. . . . . . ........ ... ... . ......... .. . . ... . . ..... .. . .. . . . .. . .............................................................................................. ...... . .. . ... ... .. . . . . .. . . . ..... . . ... . . . .. . . . . . . . . . .. . .......... ......... . . . .. . . . . .... . . . ... . . . .. . .
lowQualScore : 0 0 9 8 0 6 0 6 222 1 22 9999 5 5 5555 44 6 6 00 0 55 8 2 8 4 8 5 3 5 00 55 6 6 3 2 6 22222222 444 444 0 555555555 00 2 5 555 0 6 11111 66 6 00 6 9 4 11 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777777 0 55 4 555 000 99 6 9 7 7 55 6 2 0 44444 4 0 111 6 0 2 22 8 5 0 4 1 1 6 1 6 99 2 2222222222 222222222 2 9 0 44 9 5 1 1 2222 2 0 9 000 3 6 9 99 1 0
consensus : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--CCCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTNCAGCGAGTGTTTCTGAAACTCACACCTTTTCTGTG-G-AAAA-AAGCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATA-------CTTACATGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGA----NTACAA--TCACAGGCCATATNTT-AC--TATAGCNTTNGGACAGNTNTATTATA---------GTANATAG-CCATCATTTACTACA-TATNNCTGTCCNNAAGCTATAGTAANNNTAAGNTAGG--GCCTGTGAGGCTGTGACCACATTGGAGGATATTAACTCGAATTTGGGTGTTA-TTG---GTTT--GTGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACAT--CTTTCCTGCCACAAGACCTGTGCACTTTTAGACATAG--GAAAACAAGAGGCCCTATATGNTANC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAA-A-GATT-TTTTTGGAAATATAGAATAGC--ATGTG--T----ANAGAAAG--------GCTACTCTACCCTT-ATACAAGCTTTATCTTATA-TAAGAATCAGATTAAGTTA-AAGTCAAAAGGAAAG---GTGCATGAGCGTCCATTG-AA---ACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
Reference ( gi|2 ) : ATAACACAAACGAATCTCAGATCAGCAATATGCGCTAAACATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTTACGTGACTTTCATTCAAGTAT-TGGAAAA--CTCCAAAGAGGGCAAACAATGTTC----AGCTTTATTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGATTA-TACTTTATGTGTATTACC-AAGCTTATTTCCCACTTGACTATGTTTGTGTTTAAATCCAAAATGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAGTG-G-AAAA-AAGAACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTAATA-------CATACATGTAGTAATTATATT--GTTTGTCATAGGTTAAAACATTGATTAATCTCCGGGAGACTTCTGATAAATGGACACAGATGTGGGTGGGGTAATGTGA----ATACAA--TCACAGGCCCTATCTT-AC--TATAGCTTTTGGATAGCTATATTATA---------GTAAATAATCCATCATTTACTACA-TATCACTATCCTAAAGCTATAGTAACTGTAAGATAGG--GTCTGTGAGACTGTGACTACATTTGAACATATTAACTTGAATTTGGGTGTTA-TAG---GTTT--GTGT-A-AA-A-A-TTAGATTTGTTGTGCATGTCACGAAAAAACAGGC--CTTTCCTGCTACAAGACCTGTGCACTTTCAGACATAT--GATAACAAGAGGCCCTATATGATAAC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCCA-A-GATT-TTTTTGGAAATATATAATAGC--ATATG--TGTAAAAAAAAAG--------ACTACTCTACTCTT-ATACAAGCTTTATCTTCTG-TAAGAATCAGATTAAGTTA-AAGTCAAAGGGAAAG---ATGCATGAACGTACATTG-AA---ACAAGGACTATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGTGCAACGAAATTTTGAGCCAGAGCCAG
gi|9 : ACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--CCCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTG-G-AAAATAAGCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATA-------CTTACATGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGA----ATANNN--NNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTA-TTG---GTTT--GTGT-A-AA-A-A-ATAGATTTGTTATGCATGTCACGTGAAAACACAT--CTTTCCTGCTACAAGACCTGTGCACTTTTAGACATAG--GATAACAAG
gi|10 : cACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--CCCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTG-G-AAAATAAGCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATA-------CTTACATGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGA----ATANNN--NNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTA-TTG---GTTT--GTGT-A-AA-A-A-ATAGATTTGTTATGCATGTCACGTGAAAACACAT--CTTTCCTGCTACAAGACCTGTGCATTTTTAGACATAG--GATAACAAG
gi|1 : cACAACACAAACAAATCTCAGATCAGCAATGTGGGCTTAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACATGAATTGCATACAAATAT-TGGAAAA--CCCCAAAGAGTGCAAATAATGTTC----AGCTTTATTTGTCATTACAGCTGAGAAAAGCCGGTAACTAAATGTTTAAAAG-TAGACTAGCACTTTAAGTGTATTACCTAAGTTTTTTTCCTACTTTACTATGTTTGTGTTTAAATCATAAATGCACATTGATTTCAATATGCTGTCTCCAGCGAGTGTTTCTGAAACTCTCACCTTTTTTGTG-GAAAAA-AAGCACACACCTCAAAAGACACTT-TGTATAGG--------GTATACATGTAAGTACTGCTTGATA-------CTTACATGTAGTAATTATATT--GTTT-TCATAGGTTAAAACATTGATTAATCTCCTGCAGACTTCTGGTAAATGAACAC--AT-TGGGTGGGGTAATGTGA----ATAAAA--T
gi|23 : ACAACACAAACTA-TTTCAGATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactacattggaacatattaactcgaatttgggtgttattggtttgtgtaaaaattagatttgttatgcatgtcacgagaaaacccctttcctgctacaagacctgtgcacttttagacataggataacaagaggccctatatgatagcatatgatattgctctactagttcaatttggtgcaaagattttttttttaatataatagcatatgtgaaaaaagactactctactactctactcttatacaagctttatcttctgtaagaatcagatgaagttaaagtcaaaggtaaagatacatgagcgtacattgatacaagggagctctgcttattttcacagaaaaatatatggcgcaaagaaattttgagcaagagccagcg
gi|24 : cacACAACACAAATGAATCTCAGATCAGCAATG-GAGCTAAATATAGTAACAATTTTCC
gi|6 : cacAACACAAACCAATTTCAGATCAGCAATGTGTACTTAATATAGTAACAATTTTCCTTATATATATA------TATATAA---TAATACTAATAT-AGGAAAAAAC-CCAAAGAGTGCAAACAATACTC----AGCTTTATTTGCCATTATAACGGAGAAAAGCTGCTAACCAAATTTTTAAAAA-TAAACCAGTATATTATGTGTATTATA-AAGTTTATTTCCCACTTCATT---TTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTGCAGCGAGTGTTTCTGAAATTCTCACCTTTTCTGTG-G-AAAA-AAGCTCTCGCCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATA-------CTTACATGTAGTAATTATATT--GTTTTTCACAAGTTAAAACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGA----CTACAA--T
gi|7 : AGATCAGCAATGTGTGCTAAGTATAGTATCCATTTTCCTTA-ACAGGTGCTTGGTCACTTGACTTGCATACTAATGT-GGGAAAA--CCCCAAAAAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAATGGAGAAAATCTGGTAACTAAATTTTTAAAAAATAGACGAGTACTTTATGTATATTATA-AAGTTTAGTTCCCACTTTACAATGTTTGTGTTTAAATTCTTAATGCACA-TGATTTCAATA--ATGTCTGCAGCGAATGTTTC--AAATTCACACTTTTTCTGTG-G-AAAA-AAGTACACACCTCAATACACACTT-TCTATAGGGTATTAGGGTAT---T---AGTACTGCTTGATA-------CTTACATGTAGTAATTATATT--GTTTTTCACAGATTAATACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGA----CTACAA--TCACAGGCAATTTATT-AC--TATAGCCTCTGGACAGATATATTATA---------GTAAATAA------NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNAGGCTGTGACCTCATTGGAGGATATTAAGTTGAATTTGGGTGTTG-CTG---GTTT--GTATAA-AA-A-A-TTATATTTGTTATGCATATTACAAGAAAAGATAT--CTTTCCTGCCACAAGACCTTTGCACTTTTAGACAAAG--GAAAACAAGAGGCCCCATATGCTATC--AAACGTTATTGCTCTACTAGTTCTATTGGGT-TCA-A-GGAT-ATTTTGG----ATAGAATAGC-------------------AAG--------GCTACTCTACCCTT-ATACAAGCTTTATCTTATA-TAAGAATCAGATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattggaggatattaacttataattagatttgtaatgcatatttcaagaaaacacatctttcctgccacaagacctatgcacttttagataggaaaacaagagaccatattatgatacatgttattgctctactagttcagttgaatgcaaggatttttttgaaatatagaatagcatgtgcaacaaggctactctattcttatacaagctttatcttataaaagaatcagattaagtcaaaaggaccagtgcatgagggttcgttgaaacaaggaccagaactctgctcattttcacagaaaaatatatggcg
gi|3 : GATCAGCAATATGCGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGACTTGCAT------------AAAA--CTCCAAAGAGGGTAAACAGTGTTC----AGCTTTCTTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTCAAAAA-TAGATAAGCACTTTATGTGTATAACC-AAGTTTATTTACCACGCGACTGTGTTTGTGTTTAAATTCAAAGTGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAG-A-G-AAAA-AAGCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATA-------CTTATATGTAGTAATTATATT--GTTTGTCACAGGCTAAAACATTGATTAATCTCCGGCAGACTTCTGATAAATGAACACAGAAGTGGATGGGGTAATGTGA----ATACAA--TNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNTGAC------TACATTGGAACATATTAACTCGAA-TTGGGTGTTA-TTG---GTATACATGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACCGGAAAACA--C--CTTTCCTGCTACAAGACTTGTGCATTTTTAGACATAG--GATAACAATAGGCCCTATAAGATAGC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCAA-A-GATT-TTTTTTGAAATATATATTACCATATATG--TGTGTAAAAAAAG--------ACTACTCTACTCTT-ATACAAGCTTTATCTTTTG-TAAGAATCAGATTAAGTGA-AAGTCAAAGTAAAAG---ATGCATGAGCGTACATTG-AA---ACAAGGACTATAACTCTGTTAATTTTTGCA-GAAAA--ATATATGGTGCAAAGAAATTTTGAGCCAGAGCCAG
gi|4 : GATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACACATGCTTGGTCACGTGACTTGCATACTAGTAT-TGGAAAAAATCCCACAGAGTGCAAACAATGTTC----AGCTTTATTTGTCATTATAACTGAGAAAAGCCGGTAACTAAATGTTT-AAAA-TAGGCCAGCACTTTATGT-------------TTATTTCCCACCTTACTTTGTTTGTGTTT-AATGCTAAATGC--A-CGATTTCAATAGGGTGTCTCCAGCGAGTGTTTCTGAAATTCACACCTTTTCCGTGAA-AAAA-AAGCACACACCTCAATACACACTTGTCTATAGG--------GTAA---T---AGTACTGCTTGATACTTACATCATACATGTAGTAATTATATT--CTTTTTCACAGGTTAAAACATTGATTGATCTTCTGCAGACTTCTGACAAATGAACACAGAAGTGGGTGGGGTAATGTGA----CTACAA--TCACAAGCCATATTTTAACTATATAGCGTTAGGCTAGCTTTATCAAA---------GTAAATAA---NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNT---AGGATATTAACTCAAATTTGGGTGTAA-TTG---GCTT--GTGTAA-AA-A-A-ATAGATTTGTTATGCATGTTACGAGAAAACACAT--CTTTCCTGCCACAAGACCTGTGCACTTTTAGATGTAG--GAAAACAAGAGGCCTTATATG--------------ATTGCT---CTAGTTCAATTGGGTGCAA-G-GATT-TTTTTGGAAATATAGAATCGC--ATGTG--C------AAAAAG--------GCTACTCTACCCTT-ATACAAGCTTTATCTTATA-TAAGAATCAGATAAAGTTA-AAGTCAAAAGAAACG---GTGCATGAGCGTCCATTGAAA---ACAAGGACCATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGAATTTTTGAGCCAGAGCCAGcc
gi|11 : ATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGGCTTGCATTCTAATATGTG------------AAGAGTGCAAACAATGCTA----AGCTTTATTTGCCATTTTAACAGAGAAAAGCCGGT-----AATGTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTAACAATGTTTGTGTTTAAATTCTAAATGCACA-TCATTTCAATATGGTGTCTACAGCAAGTGTTTCTGAAATTCACGCCTTTTCTGTG-G-AAAA-AAGCACACGCCTCAATACACACTT-TCTATAGG--------GCAT---T---AGTACTGCTTGATA-------CTTACATATAGTAATTA-ATTTGGTTTATC--AGGTTAAAACATTGATTGATTTTCTACAGTCTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGA----CTACAA--TNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGA--------CCACATTGGAGGATATTAACTCAAATTTGGGTGTTA-CTG---GTTT--GTGTAA-AA-A-A-TTAGATTTGTTATGCATATTAC--AAGAACATGCATCTTTCCTTCCACACGACc
gi|5 : ATCGGCAATGTGTGCTAAATATAGTAACAATATTGTTTA-ACAGGTGCTTGGTTACGTGACTTGCATACTAATAT-GGGAAAA--CCCCAAAGAATGCAAACTATGCTCTGACAGCTTTATATGCCACAATAAGGGAGAAAAACTGGTTACCAAATTTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTACAGTGAGTGTTTCTGAAATTTACACCTTTTCTGTG-G-AAAA-ACACACACACCTCAATACACACTT-TCTATTGG--------GTAT---T---AGTACTGCCTGATA-------CTTACATGTAGTAATTATATT--GTTTTACACAGGATAAAACATTGATTGATCTTCTGCAGACTTCTGATAAACAAACACAGAAGTGGGCGGGGTAATGCGA----CTACAA--
gi|18 : TA-ACAGGTGCTTGGTCAAGTGACTTGTATACTAATAT-GGGAAAA--CCCCA---------------GCTC----AACTTTATTTGCCATTATAACAGAGTAAAGCAGGTAACAACATTTTTAAAAA-TACCCCAGTACTTTATGTGTATTATA-AAATTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGCCTATAGC-AGTGTTTCTGAAATTCACACCTTTTCTGTG-G-AAAA-AAGCACACACCTCAATACACACTT-Tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtttaactcgaacttgggtgttactggtatgtgtaaaaaatttgttatgcacattacaagaaaacacaactttcctgccacaagacctgtgcacttttagacacagggaaacaagaggccctatatgctatcatatgttattgctctacttgttcaattgggtccaaggattttttggaaatacagaatagcacatacagaaaggctgccctacctttatacaagctttattttataaaagaacgagaataagttcaaggcaaaagtccattgaaacaaggaccataactctgctaattttcgcagaaaaacatatggcgcaaataagttttgagccagccc
gi|20 : TCATTATAACTGAGAAAAACCGGTAACCAAATGTTTAAAAA-TAGACTAGCACTTAATGTGTATTACA-GAGTTTATTTCCCACTTTACTATGTTTGT
gi|21 : AGTTTATTTCCCACTTTACAATGTTTGTATTTAAATTCTAAATGCACC-TGATTTCAATATGGTGTCTACAGCGAGTGTTTCTGAAAt
gi|8 : tatagTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTTTGAAACTCGCACCTTTTCTGTG-G-AAAA-AAGCACACACCTAAATACACACTT-TCTATTGG--------GTAT---T---AGTATTGCTTGATA-------CTTACATGTTATAATTTTATT--GTTTTTCACAGGTTAAAACATTGATAAATCTCTTGCAGATTTCTGATAAATGAACACAGAAGTGGGTGGGGCAATGTGAAACAATNNNN--NNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNGACTACATTGGAAGATATTAACTTGAATTTGGGTGTTA-CTG---GTTT--GTGT---AA-A-A-TT--------------TGTCACGAGAAAACACAT--TTTTCCTGCTACAAGACCTGTGCACTTTTAGACATATAGGATAAAAAGAGGCCCTATATGATAGCATATATGTTATTGTTCTACCAGTTCAATTTGGTGCAA-A-GATT-TTTTTGGAAATAAATAATAGC--ATATG--TG----AAAAAAG----------------ACTCTT-ATACAAGGTTTATCTTATA-TTAGAATCAGAATAAGTTT-AAGTCAAAAGTAAAG---GTGCATGAGCATCCATTG-AA---ACAAGGACTGTAACTCTGCTTTTTTTCTCA-GAAAA--ATATATGGTGTAAAGAAATTTTGAGCCAGAGCCAGt
gi|12 : gaaTAGG--------GTTT---T---AGTACTGCTTGATA-------CTTACATGTAGTAGTTGTATT--GTTTTTCACAGGTTAAAACATTGATTGATCTTTGAT-GAATT--GATAAATGAACGCAGAAGTGGGTTGGGTAATGTGA----CTACAA--TNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNN---CCATCATTTACTACA-TATCATTATCCCTAAGCCAT------------------------TGAGGCTGTGACCACATTGGAGGATATTGACTGGAATTTGGGTGTTACTAGAAAGTTT--GTGT-A-AA-A-AATTAGATTTGTTATGCATATTACGAGAAAACA--T--CATTCCTGCCACAAGACCTGTGCACTTTTAGACATAG--GAAAACAAGAGGCTCTATATGTTATC--ATATGTTATTGCTCTACTAGTTCAACTGGGT-CCAGG-GATT-TTTTTGGAAATATAGAATAGC--ATGT--------ACAGAAAG--------GCTACTCTGCCCTT-ATGCAAGCTTTATCTTAAA-TAAGAAT-A----AAGTTA-AAGT-AAATAATAAGTTAAAGTA-AAAAGTCCATTG-AA---ACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCTCAAAGAAATTTTGAGCCAGAGCCAct
gi|26 : CATCAATTGATCTTCTGCAGATTCCTGATAAAT
gi|13 : atgAATGTGG----ATACAGCCTCACTGGCCCTATCTT-AC--TACAGCTTT---ACAG----ATTATA---------G
gi|7 : TTATTTACTATAATATATCTGTCCAGAGGCTATAGTAA---TAAATT-----GCCTGT--GATTGTAGTCACATTggaggatattaactcgaatttaggtgtttgtgtaaaaaattagatttgttatgcatattatgagaaaacacttctttccttccacaagacctgggcacttttagacataggaaaacaagaggccctacatgctatcatatgttattgctctactagttcaattgggtcaaaggattttttggaaatataagatagcatgtgtagaaaggctactctacccttatacaagctttatcttataaaagcatcatattaagttacagtcaaatggaacggtgcatgagcgtccactgaaacaaggaccataactctgctaatttcagcagaaaactatatatggggcaaagaaaatttgagccagagccagc
gi|13 : agatcagcaatgtgtgctaagtatagtatccattttccttaacaggtgcttggtcacttgacttgcatactaatgtgggaaaaccccaaaaagtgcaaacaatgctcagctttatttgccattataatggagaaaatctggtaactaaatttttaaaaaatagacgagtactttatgtatattataaagtttagttcccactttacaatgtttgtgtttaaattcttaatgcacatgatttcaataatgtctgcagcgaatgtttcaaattcacactttttctgtggaaaaaagtacacacctcaatacacactttctatagggtattagggtattagtactgcttgatacttacatgtagtaattatattgtttttcacagattaatacattgattgatcttctgcagacttctgataaatgaacacagaagtgggtggggtTAAAGCTGTAGTAA------GATAGG--GCCAGTGAGGCTGTATCCACATTGGAGGATATTAACTCGAATTTAGGTGTT-----------T--GTGT-A-AA-AAA-TTAGATTTGTTATGCATATTATGAGAAAACACTT--CTTTCCTTCCACAAGACCTGGGCACTTTTAGACATAG--GAAAACAAGAGGCCCTACATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGT-CAA-A-GGAT-TTTTTGGAAATATAAGATAGC--ATGTG--T------AGAAAG--------GCTACTCTACCCTT-ATACAAGCTTTATCTTATA-AAAGCATCATATTAAGTTA-CAGTCAAATGGAACG---GTGCATGAGCGTCCACTG-AA---ACAAGGACCATAACTCTGCTAATTTCAGCA-GAAAACTATATATGGGGCAAAGAAAATTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggctgtgacctcattggaggatattaagttgaatttgggtgttgctggtttgtataaaaaattatatttgttatgcatattacaagaaaagatatctttcctgccacaagacctttgcacttttagacaaaggaaaacaagaggccccatatgctatcaaacgttattgctctactagttctattgggttcaaggatattttggatagaatagcaaggctactctacccttatacaagctttatcttatataagaatcagatt
gi|15 : ctataatctgGTGACCACTTTGGAGGATATTAACTCGAATTTGGAAGTTA-CTG---GTTT--GTGA-AGAA-A-A-ATAGATTTGTTATGCATTTAACAAGAAAACACAT--CTTTCCTGCCACAAGACCTGTGCACTTTTTGACACAG--GAAAACAAGAGGCCCAATATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGAGT-CCA-AGGA---TTTTTGGAAATATAGAATAGC--ATGT--------ACAGAAAG--------GCTACTTT-TTCTTAATACAAGCTTTATCTTATG-TAAGGATTAGATTAATTTC-AAGTCAA---------------------GTCCATTG-AA---ACAAGAACTATAACTCTACTAATTTTCGCA-TAAAA--ATATATGGCGCAAAGAAA-TTTGAGCCAGAGCCAGc
gi|1 : TGACTACATTGGAACATATTAACTCGAATTTGGGTGTTA-TTG---GTTT--GTGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACC--C--CTTTCCTGCTACAAGACCTGTGCACTTTTAGACATAG--GATAACAAGAGGCCCTATATGATAGC--ATATGATATTGCTCTACTAGTTCAATTTGGTGCAA-A-GATT-TTTTTTTTA--ATATAATAGC--ATATG--TG----AAAAAAGACTACTCTACTACTCTACTCTT-ATACAAGCTTTATCTTCTG-TAAGAATCAGATGAAGTTA-AAGTCAAAGGTAAAG---ATACATGAGCGTACATTG-AT---ACAAGGG----AGCTCTGCTTATTTTCACA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCAAGAGCCAGa
gi|16 : acaacacaaacaaatctcagatcagcaatgtgggcttaatatagtaacaattttccttaacaggtgcttggtcacatgaattgcatacaaatattggaaaaccccaaagagtgcaaataatgttcagctttatttgtcattacagctgagaaaagccggtaactaaatgtttaaaagtagactagcactttaagtgtattacctaagtttttttcctactttactatgtttgtgtttaaatcataaatgcacattgatttcaatatgctgtctccagcgagtgtttctgaaactctcaccttttttgtggaaaaaaagcacacacctcaaaagacactttgtatagggtatacatgtaagtactgcttgatacttacatgtagtaattatattgttttcataggttaaaacattgattaatctcctgcagacttctggtaaatgaacacattgggtggggtaatgtgaataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTACATTGGAGGATATTAACTCGAATTTGGGTGTTA-TTG---GTTG--GTGT-A-AACA-A-TTGGATTTGTTATGCATGTCACGAGAAAATACAT--CTTTCCTGCCACAAGACCTGTGCACTTTTAGATATAG--AAAAACAAGAAGCCCTATAT-AT--C--ATACATTATTGCTGTACTAGTTCAGTT---------------------GGAAATATAGAACAGC--ACGT--------ACAGAAAG--------GCTACTCTACCCTT-ATACAAGCTTCATCTTGTA-GAAGAATCAGATTAAGT-------CAAAAGGAAAG---GTGCATGAGCGTCCATTG-AA---ACAAGGACCATAACTTCGCTAATTTTCACA-GAACA--ATATATGGCGCAAAGAAATGTTGAGCCACAGCCAcg
gi|14 : TACATTGGAGGATATTAACTTGAATTTGG--------------TTT--GTGT-A-AA-A-AATTGGATTTGTTATGCATATTACGAGAAAACACAT--CTTTCCTGCCACAAGACCTGTGCACTTTTAGACATAG--GAAAACAAGAGGCCCTGTATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGT-CCA-A-GGAT-ATTTTGGAAAT-----ATAGC--ATGT--------ACAGAAAG--------GCTACTCTACCCTT-ATACAAGTTTTATCTTCTA-TAAGAATCAGATTAAGTTACAAGTCGAAAGGAACG---GTGCGTGAGTGTCCATTG-AA---ACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
gi|5 : TTAACTCGAACTTGGGTGTTA-CTG---GTAT--GTGT-A-AA-A-A-----ATTTGTTATGCACATTACAAGAAAACACAA--CTTTCCTGCCACAAGACCTGTGCACTTTTAGACACAG--GGAAACAAGAGGCCCTATATGCTATC--ATATGTTATTGCTCTACTTGTTCAATTGGGT-CCA-A-GGAT-TTTTTGGAAATACAGAATAGC--ACAT--------ACAGAAAG--------GCTGCCCTACCTTT-ATACAAGCTTTATTTTATA-AAAGAACGAGAATAAGTTC-AAGGCAAAAG-------------------TCCATTG-AA---ACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ACATATGGCGCAAATAAGTTTTGAGCCAGcc
gi|6 : atcggcaatgtgtgctaaatatagtaacaatattgtttaacaggtgcttggttacgtgacttgcatactaatatgggaaaaccccaaagaatgcaaactatgctctgacagctttatatgccacaataagggagaaaaactggttaccaaatttttaaaaatagaccagtactttatgtgtattataaagtttatttcccactttacaatgtttgtgtttaaattctaaatgcacatgatttcaatatggtgtctacagtgagtgtttctgaaatttacaccttttctgtggaaaaacacacacacctcaatacacactttctattgggtattagtactgcctgatacttacatgtagtaattatattgttttacacaggataaaacattgattgatcttctgcagacttctgataaacaaacacagaagtgggcggggtaatgcgactacaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggt-A-A-TTAGATTTGTAATGCATATTTCAAGAAAACACAT--CTTTCCTGCCACAAGACCTATGCACTTTTAGA--TAG--GAAAACAAGAGACC--ATATTATGAT--ACATGTTATTGCTCTACTAGTTCAGTTGAATGCAA-G-GATT-TTTTTG-AAATATAGAATAGC--ATGTG--C------AACAAG--------GCTACTCTATTCTT-ATACAAGCTTTATCTTATA-AAAGAATCAGATTAAGT-------CAAAAGGACCA---GTGCATGAGGGTTCGTTG-AA---ACAAGGACCAGAACTCTGCTCATTTTCACA-GAAAA--ATATATGGCGccc
gi|17 : aacacaaaccaatttcagatcagcaatgtgtacttaatatagtaacaattttccttatatatatatatataataatactaatataggaaaaaacccaaagagtgcaaacaatactcagctttatttgccattataacggagaaaagctgctaaccaaatttttaaaaataaaccagtatattatgtgtattataaagtttatttcccacttcatttttgtgtttaaattctaaatgcacatgatttcaatatggtgtctgcagcgagtgtttctgaaattctcaccttttctgtggaaaaaagctctcgcctcaatacacactttctatagggtattagtactgcttgatacttacatgtagtaattatattgtttttcacaagttaaaacattgattgatcttctgcagacttctgataaatgaacacagaagtgggtggggtaatgtgactacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattggaggatattaacttatTTCCTGCTACAAGACCTGTGCACTTTTTGACATAG--GATAACAAGAGACCCTATATAATAAC--ATATGTTATTGCTCTACTAGTTCAATTTGGTGCAA-A-GATTGTTTTTTGAAATATATAATAGC--TTATAATTATGAAAAA-----------------------CTT-ATACAAGCTTTATCTTCAGATAAGAATCAGATTAAGTTA-AATTCAAAGGGAAAG---ATGCATGAGCTTCTATTG-AA---ACAAGGATTATAATTCTGCTAA-TTTCGCATAAAAA--ATATATGGCGCAAAGAAATTTTGAGCTAGA
gi|19 : GAAATATATAATAGC--ATATG--TG----AAAAAAG--------ACTTCTCTACTCTT-ATACAAGCTTTATCTTATA-TGATAATCAGAATAAGTTA-AAGTCAAAAGTAAAG---GTGCATGAGCGTCCATTG-AA---ACAAGAACTATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGGAATTTTGAGCCAGAGCCAG
gi|22 : TA-TAAGAATCAGTTTAAATTA-AAGTCAAAAGGAc
gi|22 : taTAAATTA-AAGTCAAAAGGACCAAAACTCTGCTAATTTTCGCA-AAAAA--A-------------GAAATTTTGAGCCAGAGCCAGccaaaactctgctaattttcgcaaaaaaagaaattttgagccagagccagc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): GCCCTGTCTAGGAATCATAACTTGATTGTTACACAAA
Unaligned ( gi|27 ): AAAATGTGCTCAATATAGTAACAATTTGACTT
Alignments
lowQualScore : 11111111 1111111 444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111111 111111111
lowQualScore : 3 2 55 55 3 2 7777 66 3 3 0 55 1 3 1 3 6 3 3 22222222 555 555 0000000 44 1 777 0 0 0 1 5 66 1 1 11 1 1 0 888888888888888888888888888888888888888888888888888888888888888888888888888 5555 33 7 2 2 2 55 1 33 2 2 4 2 33 4 0 8 2 2 9999999999999999999 2 000000000 2 2 5555 2 2 2 2 33
lowQualScore : . . .. .. . . .... .. . . . .. . . . . . . . ........ ... ... ....... .. . ... . . . . . .. . . .. . . . ........................................................................... .... .. . . . . .. . .. . . . . .. . . . . . ................... . ......... . . .... . . . . ..
lowQualScore : 3 6 77 00 6 4 7777 55 3 3 8 22 0 1 0 3 7 3 3 11111111 888 888 8888888 66 0 888 6 2 5 0 0 99 0 0 11 0 0 5 333333333333333333333333333333333333333333333333333333333333333333333333333 3333 44 5 5 5 5 66 2 44 4 9 8 0 99 3 2 6 9 7 9999999999999999999 5 666666666 5 7 7777 1 2 7 7 77
consensus : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATA---------GTANATAG-CCATCATTTACTACATATCACTATCCCAAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGCAT------GTG--T----ANAGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
Reference ( family-5849 ) : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTNCAGCGAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTNGGACAGNTNTATTATA---------GTANATAG-CCATCATTTACTACATATNNCTGTCCNNAAGCTATAGTAANNNTAAGNTAGGGCCTGTGAGGCTGTGACCACATTGGAGGATATTAACTCGAATTTGGGTGTTATTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTAT-ATGNTANC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAAGATT-TTTTTGGAAATATAGAATAGCAT------GTG--T----ANAGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
gi|1 : ACAACACAAACAAATCTCAGATCAGCAATGTGGGCTTAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACATGAATTGCATACAAATAT-TGGAAAA--C-CCCAAAGAGTGCAAATAATGTTC----AGCTTTATTTGTCATTACAGCTGAGAAAAGCCGGTAACTAAATGTTTAAAAG-TAGACTAGCACTTTAAGTGTATTACCTAAGTTTTTTTCCTACTTTACTATGTTTGTGTTTAAATCATAAATGCACATTGATTTCAATATGCTGTCTCCAGCGAGTGTTTCTGAAACTCTCACCTTTTTTGTGGAAAAA-AA-GCACACACCTCAAAAGACACTT-TGTATAGG--------GTATACATGTAAGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--G-TTTTCATAGGTTAAAACATTGATTAATCTCCTGCAGACTTCTGGTAAATGAACAC---ATTGGGTGGGGTAATGTGAATAAAAT---NNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTACATTGGAACATATTAACTCGAATTTGGGTGTTATTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACCC--CTTTCCTGCTACAAGACCTGTGCACTTTTAGAC--ATAGGATAACAAGAGGCCCTAT-ATGATAGC--ATATGATATTGCTCTACTAGTTCAATTTGGTGCAAAGATT-TTTTTTTTAATAT--AATAGCAT------ATG--T----GAAAAAAGACTACTCTACTACTCTACTCTTATACAAGCTTTATCTT-CTGTAAGAATCAGATGAAGTTA-AAGTCAA----AGGTAAAGATACATGAGCGTACATTG-ATACAAGGG----AGCTCTGCTTATTTTCACA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCAAGAGCCAG
gi|10 : ACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--C-CCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAATAA-GCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATANNNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTATTGG----TTTG--TGT-A-AA-A-A-ATAGATTTGTTATGCATGTCACGTGAAAACACATCTTTCCTGCTACAAGACCTGTGCATTTTTAGAC--ATAGGATAACAAGcg
gi|11 : cATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGGCTTGCATTCTAATATGTG-------------AAGAGTGCAAACAATGCTA----AGCTTTATTTGCCATTTTAACAGAGAAAAGCCGGT-----AATGTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTAACAATGTTTGTGTTTAAATTCTAAATGCACA-TCATTTCAATATGGTGTCTACAGCAAGTGTTTCTGAAATTCACGCCTTTTCTGTGG-AAAA-AA-GCACACGCCTCAATACACACTT-TCTATAGG--------GCAT---T---AGTACTGCTTGATACTTACA-------TATAGTAATTA-ATTTGGTTTAT--CAGGTTAAAACATTGATTGATTTTCTACAGTCTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAAT-----NNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGACCACATTGGAGGATATTAACTCAAATTTGGGTGTTACTGG----TTTG--TGTAA-AA-A-A-TTAGATTTGTTATGCATATTACAAGAACATGCATCTTTCCTTCCACACGAC
gi|12 : TAGG--------GTTT---T---AGTACTGCTTGATACTTACA-------TGTAGTAGTTGTATT--GTTTTTCACAGGTTAAAACATTGATTGATCTT-TGATGAATT--GATAAATGAACGCAGAAGTGGGTTGGGTAATGTGACTACAATNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNN---CCATCATTTACTACATATCATTATCCCTAAGCCAT----------------------TGAGGCTGTGACCACATTGGAGGATATTGACTGGAATTTGGGTGTTACTAGAAAGTTTG--TGT-A-AA-A-AATTAGATTTGTTATGCATATTACGAGAAAACA--TCATTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCTCTAT-ATGTTATC--ATATGTTATTGCTCTACTAGTTCAACTGGGTCCAGGGATT-TTTTTGGAAATATAGAATAGCA--------TG--T----ACAGAAAG--------GCTACTCTGCCCTTATGCAAGCTTTATCTT-AAATAAGAAT-A----AAGTTA-AAGTAAATAATAAGTTAAAGTA---AAAAGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCTCAAAGAAATTTTGAGCCAGAGCCA
gi|13 : CTGT---AAAGCTGTAGTAA------GATAGGGCCAGTGAGGCTGTATCCACATTGGAGGATATTAACTCGAATTTAGGTGTT-----------TG--TGT-A-AA-AAA-TTAGATTTGTTATGCATATTATGAGAAAACACTTCTTTCCTTCCACAAGACCTGGGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTAC-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGT-CAAAGGAT-TTTTTGGAAATATAAGATAGCAT------GTG--T------AGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATAAAAGCATCATATTAAGTTA-CAGTCAA----ATGGAACGGTGCATGAGCGTCCACTG-AAACAAGGACCATAACTCTGCTAATTTCAGCA-GAAAACTATATATGGGGCAAAGAAAATTTGAGCCAGAGCCAG
gi|14 : ctataatACATTGGAGGATATTAACTTGAATTTGG--------------TTTG--TGT-A-AA-A-AATTGGATTTGTTATGCATATTACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTGT-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTCCAAGGA-T-ATTTTGGAAAT-----ATAGCA--------TG--T----ACAGAAAG--------GCTACTCTACCCTTATACAAGTTTTATCTT-CTATAAGAATCAGATTAAGTTACAAGTCGA----AAGGAACGGTGCGTGAGTGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAGc
gi|15 : tGTGACCACTTTGGAGGATATTAACTCGAATTTGGAAGTTACTGG----TTTG--TGA-AGAA-A-A-ATAGATTTGTTATGCATTTAACAAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTTGAC--ACAGGAAAACAAGAGGCCCAAT-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGAGTCCAAGGA---TTTTTGGAAATATAGAATAGCA--------TG--T----ACAGAAAG--------GCTACTTTTTCTTAATACAAGCTTTATCTT-ATGTAAGGATTAGATTAATTTC-AAGTCAA----------------------GTCCATTG-AAACAAGAACTATAACTCTACTAATTTTCGCA-TAAAA--ATATATGGCGCAAAGAAA-TTTGAGCCAGAGCCAGcc
gi|16 : ACTACATTGGAGGATATTAACTCGAATTTGGGTGTTATTGG----TTGG--TGT-A-AACA-A-TTGGATTTGTTATGCATGTCACGAGAAAATACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAT--ATAGAAAAACAAGAAGCCCTAT-AT---ATC--ATACATTATTGCTGTACTAGTTCAGTTGG-------------------AAATATAGAACAGCAC------GT--------ACAGAAAG--------GCTACTCTACCCTTATACAAGCTTCATCTT-GTAGAAGAATCAGATTAAGT-------CAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTTCGCTAATTTTCACA-GAACA--ATATATGGCGCAAAGAAATGTTGAGCCACAGCCAa
gi|17 : TTCCTGCTACAAGACCTGTGCACTTTTTGAC--ATAGGATAACAAGAGACCCTAT-ATAATAAC--ATATGTTATTGCTCTACTAGTTCAATTTGGTGCAAAGATTGTTTTTTGAAATATATAATAGCTT------ATAATT----ATGAAAAA-------------------CTTATACAAGCTTTATCTTCAGATAAGAATCAGATTAAGTTA-AATTCAA----AGGGAAAGATGCATGAGCTTCTATTG-AAACAAGGATTATAATTCTGCTAA-TTTCGCATAAAAA--ATATATGGCGCAAAGAAATTTTGAGCTAGA
gi|18 : TA-ACAGGTGCTTGGTCAAGTGACTTGTATACTAATAT-GGGAAAA--C-CCCA---------------GCTC----AACTTTATTTGCCATTATAACAGAGTAAAGCAGGTAACAACATTTTTAAAAA-TACCCCAGTACTTTATGTGTATTATA-AAATTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGCCTATAGC-AGTGTTTCTGAAATTCACACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-T
gi|19 : GAAATATATAATAGCAT------ATG--T----GAAAAAAG--------ACTTCTCTACTCTTATACAAGCTTTATCTT-ATATGATAATCAGAATAAGTTA-AAGTCAA----AAGTAAAGGTGCATGAGCGTCCATTG-AAACAAGAACTATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGGAATTTTGAGCCAGAGCCAG
gi|2 : ATAACACAAACGAATCTCAGATCAGCAATATGCGCTAAACATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTTACGTGACTTTCATTCAAGTAT-TGGAAAA--C-TCCAAAGAGGGCAAACAATGTTC----AGCTTTATTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGATTA-TACTTTATGTGTATTACC-AAGCTTATTTCCCACTTGACTATGTTTGTGTTTAAATCCAAAATGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAGTGG-AAAA-AA-GAACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTAATACATACA-------TGTAGTAATTATATT--GTTTGTCATAGGTTAAAACATTGATTAATCTCCGGGAGACTTCTGATAAATGGACACAGATGTGGGTGGGGTAATGTGAATACAATCACAGGCCCTATCTT-AC--TATAGCTTTTGGATAGCTATATTATA---------GTAAATAATCCATCATTTACTACATATCACTATCCTAAAGCTATAGTAACTGTAAGATAGGGTCTGTGAGACTGTGACTACATTTGAACATATTAACTTGAATTTGGGTGTTATAGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTGTGCATGTCACGAAAAAACAGGCCTTTCCTGCTACAAGACCTGTGCACTTTCAGAC--ATATGATAACAAGAGGCCCTAT-ATGATAAC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCCAAGATT-TTTTTGGAAATATATAATAGCAT------ATG--TGTAAAAAAAAAG--------ACTACTCTACTCTTATACAAGCTTTATCTT-CTGTAAGAATCAGATTAAGTTA-AAGTCAA----AGGGAAAGATGCATGAACGTACATTG-AAACAAGGACTATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGTGCAACGAAATTTTGAGCCAGAGCCAGc
gi|20 : CATTATAACTGAGAAAAACCGGTAACCAAATGTTTAAAAA-TAGACTAGCACTTAATGTGTATTACA-GAGTTTATTTCCCACTTTACTATGTTTGT
gi|21 : tTATA-GAGTTTATTTCCCACTTTACAATGTTTGTATTTAAATTCTAAATGCACC-TGATTTCAATATGGTGTCTACAGCGAGTGTTTCTGAAAt
gi|22 : T-ATATAAGAATCAGTTTAAATTA-AAGTCAA----AAGGA---------------CCA----AAAC------------TCTGCTAATTTTCGCA-AAA---------------AAAGAAATTTTGAGCCAGAGCCAGt
gi|23 : ACAACACAAACTA-TTTCAGATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-c
gi|24 : cacACAACACAAATGAATCTCAGATCAGCAATG-GAGCTAAATATAGTAACAATTTTCC
gi|26 : cacCATCAATTGATCTTCTGCAGATTCCTGATAAAT
gi|27 : atgAATGTGCTC--AATATAGTAACAATTT
gi|3 : aaGATCAGCAATATGCGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGACTTGCATA------------AAA--C-TCCAAAGAGGGTAAACAGTGTTC----AGCTTTCTTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTCAAAAA-TAGATAAGCACTTTATGTGTATAACC-AAGTTTATTTACCACGCGACTGTGTTTGTGTTTAAATTCAAAGTGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAG-AG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTATA-------TGTAGTAATTATATT--GTTTGTCACAGGCTAAAACATTGATTAATCTCCGGCAGACTTCTGATAAATGAACACAGAAGTGGATGGGGTAATGTGAATACAATgactt
gi|3 : TGACTACATTGGAACATATTAACTCGAATT-GGGTGTTATTGG----TATACATGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACCGGAAAACAC--CTTTCCTGCTACAAGACTTGTGCATTTTTAGAC--ATAGGATAACAATAGGCCCTAT-AAGATAGC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCAAAGATT-TTTTTTGAAATATATATTACCATATATGTGTG--T----AAAAAAAG--------ACTACTCTACTCTTATACAAGCTTTATCTT-TTGTAAGAATCAGATTAAGTGA-AAGTCAA----AGTAAAAGATGCATGAGCGTACATTG-AAACAAGGACTATAACTCTGTTAATTTTTGCA-GAAAA--ATATATGGTGCAAAGAAATTTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactacattggaacatattaactcgaattgggtgttattggtatacatgtaaaaattagatttgttatgcatgtcaccggaaaacacctttcctgctacaagacttgtgcatttttagacataggataacaataggccctataagatagcatatgttattgctctactaattcaatttggtgcaaagattttttttgaaatatatattaccatatatgtgtgtaaaaaaagactactctactcttatacaagctttatcttttgtaagaatcagattaagtgaaagtcaaagtaaaagatgcatgagcgtacattgaaacaaggactataactctgttaatttttgcagaaaaatatatggtgcaaagaaattttgagccagagccagcc
gi|4 : gatcagcaatatgcgctaaatatagtaacaattttccttaagaggtgcttggtcacgtgacttgcataaaactccaaagagggtaaacagtgttcagctttctttgtcatgctaactgagaaaagccggtaaccaaatgttcaaaaatagataagcactttatgtgtataaccaagtttatttaccacgcgactgtgtttgtgtttaaattcaaagtgcatatgatttcaatatggtgtctccagcgagtgtttctgaaacttgcaccttttaagagaaaaaagcacacacctcaatacacactttctatagggtattagtactgcttgatacttatatgtagtaattatattgtttgtcacaggctaaaacattgattaatctccggcagacttctgataaatgaacacagaagtggatggggtaatgtgaatacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACACATGCTTGGTCACGTGACTTGCATACTAGTAT-TGGAAAAAAT-CCCACAGAGTGCAAACAATGTTC----AGCTTTATTTGTCATTATAACTGAGAAAAGCCGGTAACTAAATGTTTAAAA--TAGGCCAGCACTTTATGT-------------TTATTTCCCACCTTACTTTGTTTGTGTTTAA-TGCTAAATGCAC---GATTTCAATAGGGTGTCTCCAGCGAGTGTTTCTGAAATTCACACCTTTTCCGTGA-AAAA-AAAGCACACACCTCAATACACACTTGTCTATAGG--------GTAA---T---AGTACTGCTTGATACTTACATCATACATGTAGTAATTATATT--CTTTTTCACAGGTTAAAACATTGATTGATCTTCTGCAGACTTCTGACAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATCACAAGCCATATTTTAACTATATAGCGTTAGGCTAGCTTTATCAAA---------GTAAATA----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--AGGATATTAACTCAAATTTGGGTGTAATTGG----CTTG--TGTAA-AA-A-A-ATAGATTTGTTATGCATGTTACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAT--GTAGGAAAACAAGAGGCCTTAT-ATG--------------ATTGCT---CTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATCGCAT------GTG--------CAAAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATAAAGTTA-AAGTCAA----AAGAAACGGTGCATGAGCGTCCATTGAAAACAAGGACCATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGAATTTTTGAGCCAGAGCCAGcc
gi|5 : ATCGGCAATGTGTGCTAAATATAGTAACAATATTGTTTA-ACAGGTGCTTGGTTACGTGACTTGCATACTAATAT-GGGAAAA--C-CCCAAAGAATGCAAACTATGCTCTGACAGCTTTATATGCCACAATAAGGGAGAAAAACTGGTTACCAAATTTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTACAGTGAGTGTTTCTGAAATTTACACCTTTTCTGTGG-AAAA-AC-ACACACACCTCAATACACACTT-TCTATTGG--------GTAT---T---AGTACTGCCTGATACTTACA-------TGTAGTAATTATATT--GTTTTACACAGGATAAAACATTGATTGATCTTCTGCAGACTTCTGATAAACAAACACAGAAGTGGGCGGGGTAATGCGACTACAAc
gi|5 : TTAACTCGAACTTGGGTGTTACTGG----TATG--TGT-A-AA-A-A-----ATTTGTTATGCACATTACAAGAAAACACAACTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ACAGGGAAACAAGAGGCCCTAT-ATGCTATC--ATATGTTATTGCTCTACTTGTTCAATTGGGTCCAAGGA-T-TTTTTGGAAATACAGAATAGCA--------CA--T----ACAGAAAG--------GCTGCCCTACCTTTATACAAGCTTTATTTT-ATAAAAGAACGAGAATAAGTTC-AAGGCAA----AA----------------GTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ACATATGGCGCAAATAAGTTTTGAGCCAGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtttaactcgaacttgggtgttactggtatgtgtaaaaaatttgttatgcacattacaagaaaacacaactttcctgccacaagacctgtgcacttttagacacagggaaacaagaggccctatatgctatcatatgttattgctctacttgttcaattgggtccaaggattttttggaaatacagaatagcacatacagaaaggctgccctacctttatacaagctttattttataaaagaacgagaataagttcaaggcaaaagtccattgaaacaaggaccataactctgctaattttcgcagaaaaacatatggcgcaaataagttttgagccagccc
gi|6 : atcggcaatgtgtgctaaatatagtaacaatattgtttaacaggtgcttggttacgtgacttgcatactaatatgggaaaaccccaaagaatgcaaactatgctctgacagctttatatgccacaataagggagaaaaactggttaccaaatttttaaaaatagaccagtactttatgtgtattataaagtttatttcccactttacaatgtttgtgtttaaattctaaatgcacatgatttcaatatggtgtctacagtgagtgtttctgaaatttacaccttttctgtggaaaaacacacacacctcaatacacactttctattgggtattagtactgcctgatacttacatgtagtaattatattgttttacacaggataaaacattgattgatcttctgcagacttctgataaacaaacacagaagtgggcggggtaatgcgactacaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtAACACAAACCAATTTCAGATCAGCAATGTGTACTTAATATAGTAACAATTTTCCTTATATATATAT------ATATAA--TA-ATACTAATAT-AGGAAAA--AACCCAAAGAGTGCAAACAATACTC----AGCTTTATTTGCCATTATAACGGAGAAAAGCTGCTAACCAAATTTTTAAAAA-TAAACCAGTATATTATGTGTATTATA-AAGTTTATTTCCCACTTCATT---TTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTGCAGCGAGTGTTTCTGAAATTCTCACCTTTTCTGTGG-AAAA-AA-GCTCTCGCCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAAGTTAAAACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATccc
gi|6 : ACATTGGAGGATATTAACT-------------TAT----------------------A-A-TTAGATTTGTAATGCATATTTCAAGAAAACACATCTTTCCTGCCACAAGACCTATGCACTTTTAGA----TAGGAAAACAAGAGACCATATTATGATAC-----ATGTTATTGCTCTACTAGTTCAGTTGAATGCAAGGATT-TTTTTG-AAATATAGAATAGCAT------GTG--C----AAC--AAG--------GCTACTCTATTCTTATACAAGCTTTATCTT-ATAAAAGAATCAGATTAAGT-------CAA----AAGGACCAGTGCATGAGGGTTCGTTG-AAACAAGGACCAGAACTCTGCTCATTTTCACA-GAAAA--ATATATGGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattggaggatattaacttataattagatttgtaatgcatatttcaagaaaacacatctttcctgccacaagacctatgcacttttagataggaaaacaagagaccatattatgatacatgttattgctctactagttcagttgaatgcaaggatttttttgaaatatagaatagcatgtgcaacaaggctactctattcttatacaagctttatcttataaaagaatcagattaagtcaaaaggaccagtgcatgagggttcgttgaaacaaggaccagaactctgctcattttcacagaaaaatatatggcg
gi|7 : aacacaaaccaatttcagatcagcaatgtgtacttaatatagtaacaattttccttatatatatatatataataatactaatataggaaaaaacccaaagagtgcaaacaatactcagctttatttgccattataacggagaaaagctgctaaccaaatttttaaaaataaaccagtatattatgtgtattataaagtttatttcccacttcatttttgtgtttaaattctaaatgcacatgatttcaatatggtgtctgcagcgagtgtttctgaaattctcaccttttctgtggaaaaaagctctcgcctcaatacacactttctatagggtattagtactgcttgatacttacatgtagtaattatattgtttttcacaagttaaaacattgattgatcttctgcagacttctgataaatgaacacagaagtgggtggggtaatgtgactacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATCAGCAATGTGTGCTAAGTATAGTATCCATTTTCCTTA-ACAGGTGCTTGGTCACTTGACTTGCATACTAATGT-GGGAAAA--C-CCCAAAAAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAATGGAGAAAATCTGGTAACTAAATTTTTAAAAAATAGACGAGTACTTTATGTATATTATA-AAGTTTAGTTCCCACTTTACAATGTTTGTGTTTAAATTCTTAATGCACA-TGATTTCAATA--ATGTCTGCAGCGAATGTTTC--AAATTCACACTTTTTCTGTGG-AAAA-AA-GTACACACCTCAATACACACTT-TCTATAGGGTATTAGGGTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGATTAATACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATCACAGGCAATTTATT-AC--TATAGCCTCTGGACAGATATATTATA---------GTAAATAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGACCTCATTGGAGGATATTAAGTTGAATTTGGGTGTTGCTGG----TTTG--TATAA-AA-A-A-TTATATTTGTTATGCATATTACAAGAAAAGATATCTTTCCTGCCACAAGACCTTTGCACTTTTAGAC--AAAGGAAAACAAGAGGCCCCAT-ATGCTATC--AAACGTTATTGCTCTACTAGTTCTATTGGGTTCAAGGA-T-ATTTTGG----ATAGAATAGC-----------------------AAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATT
gi|8 : TGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTTTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTAAATACACACTT-TCTATTGG--------GTAT---T---AGTATTGCTTGATACTTACA-------TGTTATAATTTTATT--GTTTTTCACAGGTTAAAACATTGATAAATCTCTTGCAGATTTCTGATAAATGAACACAGAAGTGGGTGGGGCAATGTGAA-ACAAT
gi|8 : gaaGACTACATTGGAAGATATTAACTTGAATTTGGGTGTTACTGG----TTTG--TGT---AA-A-A-TT--------------TGTCACGAGAAAACACATTTTTCCTGCTACAAGACCTGTGCACTTTTAGACATATAGGATAAAAAGAGGCCCTAT-ATGATAGCATATATGTTATTGTTCTACCAGTTCAATTTGGTGCAAAGATT-TTTTTGGAAATAAATAATAGCAT------ATG--T----GAAAAAAG----------------ACTCTTATACAAGGTTTATCTT-ATATTAGAATCAGAATAAGTTT-AAGTCAA----AAGTAAAGGTGCATGAGCATCCATTG-AAACAAGGACTGTAACTCTGCTTTTTTTCTCA-GAAAA--ATATATGGTGTAAAGAAATTTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactacattggaagatattaacttgaatttgggtgttactggtttgtgtaaaatttgtcacgagaaaacacatttttcctgctacaagacctgtgcacttttagacatataggataaaaagaggccctatatgatagcatatatgttattgttctaccagttcaatttggtgcaaagatttttttggaaataaataatagcatatgtgaaaaaagactcttatacaaggtttatcttatattagaatcagaataagtttaagtcaaaagtaaaggtgcatgagcatccattgaaacaaggactgtaactctgctttttttctcagaaaaatatatggtgtaaagaaattttgagccagagccagct
gi|9 : gaatgtgtttaaatcctaaatgcacatgatttcaatatggtgtctccagcgagtgtttttgaaactcgcaccttttctgtggaaaaaagcacacacctaaatacacactttctattgggtattagtattgcttgatacttacatgttataattttattgtttttcacaggttaaaacattgataaatctcttgcagatttctgataaatgaacacagaagtgggtggggcaatgtgaaacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--C-CCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAATAA-GCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATANNNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTATTGG----TTTG--TGT-A-AA-A-A-ATAGATTTGTTATGCATGTCACGTGAAAACACATCTTTCCTGCTACAAGACCTGTGCACTTTTAGAC--ATAGGATAACAAGct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GCCCTGTCTAGGAATCATAACTTGATTGTTACACAAA
Alignments
lowQualScore : 11111111 1111111 44444444444444444444 3333333333333333333333 1 1111111111111111111 111111111
lowQualScore : 3 2 55 55 3 2 7777 66 3 3 0 55 1 0 3 1 3 3 6 3 3 22222222 555 555 0000000 44 1 777 0 0 0 1 5 66 1 0 0 0 0 11111111111111111111 0 0 00 0000000000000000000000 1 5555 33 7 2 2 2 55 1 33 1 2 4 2 33 2 0 2 2 9999999999999999999 2 000000000 2 2 5555 2 2 2 2 33
lowQualScore : . . .. .. . . .... .. . . . .. . . . . . . . . . ........ ... ... ....... .. . ... . . . . . .. . . . . . .................... . . .. ...................... . .... .. . . . . .. . .. . . . . .. . . . . ................... . ......... . . .... . . . . ..
lowQualScore : 3 6 77 00 6 4 7777 55 3 3 8 22 0 5 1 5 5 3 7 3 3 11111111 888 888 8888888 66 0 888 6 2 5 0 0 99 0 5 2 5 5 55555555555555555555 2 2 88 9999999999999999999999 7 3333 44 5 5 5 5 66 2 44 0 9 8 6 99 5 2 9 7 9999999999999999999 5 666666666 5 7 7777 1 2 7 7 77
consensus : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATA---------GTANATAG-CCATCATTTACTACATATCACTATCCCAAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGCAT------GTG--T----ANAGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
Reference ( family-5849 ) : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATA---------GTANATAG-CCATCATTTACTACATATCACTATCCCAAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGCAT------GTG--T----ANAGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
gi|1 : ACAACACAAACAAATCTCAGATCAGCAATGTGGGCTTAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACATGAATTGCATACAAATAT-TGGAAAA--C-CCCAAAGAGTGCAAATAATGTTC----AGCTTTATTTGTCATTACAGCTGAGAAAAGCCGGTAACTAAATGTTTAAAAG-TAGACTAGCACTTTAAGTGTATTACCTAAGTTTTTTTCCTACTTTACTATGTTTGTGTTTAAATCATAAATGCACATTGATTTCAATATGCTGTCTCCAGCGAGTGTTTCTGAAACTCTCACCTTTTTTGTGGAAAAA-AA-GCACACACCTCAAAAGACACTT-TGTATAGG--------GTATACATGTAAGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--G-TTTTCATAGGTTAAAACATTGATTAATCTCCTGCAGACTTCTGGTAAATGAACAC---ATTGGGTGGGGTAATGTGAATAAAAT---NNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTACATTGGAACATATTAACTCGAATTTGGGTGTTATTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACCC--CTTTCCTGCTACAAGACCTGTGCACTTTTAGAC--ATAGGATAACAAGAGGCCCTAT-ATGATAGC--ATATGATATTGCTCTACTAGTTCAATTTGGTGCAAAGATT-TTTTTTTTAATAT--AATAGCAT------ATG--T----GAAAAAAGACTACTCTACTACTCTACTCTTATACAAGCTTTATCTT-CTGTAAGAATCAGATGAAGTTA-AAGTCAA----AGGTAAAGATACATGAGCGTACATTG-ATACAAGGG----AGCTCTGCTTATTTTCACA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCAAGAGCCAG
gi|10 : ACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--C-CCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAATAA-GCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATANNNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTATTGG----TTTG--TGT-A-AA-A-A-ATAGATTTGTTATGCATGTCACGTGAAAACACATCTTTCCTGCTACAAGACCTGTGCATTTTTAGAC--ATAGGATAACAAGcg
gi|11 : cATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGGCTTGCATTCTAATATGTG-------------AAGAGTGCAAACAATGCTA----AGCTTTATTTGCCATTTTAACAGAGAAAAGCCGGT-----AATGTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTAACAATGTTTGTGTTTAAATTCTAAATGCACA-TCATTTCAATATGGTGTCTACAGCAAGTGTTTCTGAAATTCACGCCTTTTCTGTGG-AAAA-AA-GCACACGCCTCAATACACACTT-TCTATAGG--------GCAT---T---AGTACTGCTTGATACTTACA-------TATAGTAATTA-ATTTGGTTTAT--CAGGTTAAAACATTGATTGATTTTCTACAGTCTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAAT-----NNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGACCACATTGGAGGATATTAACTCAAATTTGGGTGTTACTGG----TTTG--TGTAA-AA-A-A-TTAGATTTGTTATGCATATTACAAGAACATGCATCTTTCCTTCCACACGAC
gi|12 : TAGG--------GTTT---T---AGTACTGCTTGATACTTACA-------TGTAGTAGTTGTATT--GTTTTTCACAGGTTAAAACATTGATTGATCTT-TGATGAATT--GATAAATGAACGCAGAAGTGGGTTGGGTAATGTGACTACAATNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNN---CCATCATTTACTACATATCATTATCCCTAAGCCAT----------------------TGAGGCTGTGACCACATTGGAGGATATTGACTGGAATTTGGGTGTTACTAGAAAGTTTG--TGT-A-AA-A-AATTAGATTTGTTATGCATATTACGAGAAAACA--TCATTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCTCTAT-ATGTTATC--ATATGTTATTGCTCTACTAGTTCAACTGGGTCCAGGGATT-TTTTTGGAAATATAGAATAGCA--------TG--T----ACAGAAAG--------GCTACTCTGCCCTTATGCAAGCTTTATCTT-AAATAAGAAT-A----AAGTTA-AAGTAAATAATAAGTTAAAGTA---AAAAGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCTCAAAGAAATTTTGAGCCAGAGCCA
gi|13 : AAAGCTGTAGTAA------GATAGGGCCAGTGAGGCTGTATCCACATTGGAGGATATTAACTCGAATTTAGGTGTT-----------TG--TGT-A-AA-AAA-TTAGATTTGTTATGCATATTATGAGAAAACACTTCTTTCCTTCCACAAGACCTGGGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTAC-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTCAAAGGA-T-TTTTTGGAAATATAAGATAGCAT------GTG--T------AGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATAAAAGCATCATATTAAGTTA-CAGTCAA----ATGGAACGGTGCATGAGCGTCCACTG-AAACAAGGACCATAACTCTGCTAATTTCAGCA-GAAAACTATATATGGGGCAAAGAAAATTTGAGCCAGAGCCAG
gi|14 : ctataatctgtTACATTGGAGGATATTAACTTGAATTTGG--------------TTTG--TGT-A-AA-A-AATTGGATTTGTTATGCATATTACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTGT-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTCCAAGGA-T-ATTTTGGAAAT-----ATAGCA--------TG--T----ACAGAAAG--------GCTACTCTACCCTTATACAAGTTTTATCTT-CTATAAGAATCAGATTAAGTTACAAGTCGA----AAGGAACGGTGCGTGAGTGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAGc
gi|15 : GTGACCACTTTGGAGGATATTAACTCGAATTTGGAAGTTACTGG----TTTG--TGA-AGAA-A-A-ATAGATTTGTTATGCATTTAACAAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTTGAC--ACAGGAAAACAAGAGGCCCAAT-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGAGTCCAAGGA---TTTTTGGAAATATAGAATAGCA--------TG--T----ACAGAAAG--------GCTACTTTTTCTTAATACAAGCTTTATCTT-ATGTAAGGATTAGATTAATTTC-AAGTCAA----------------------GTCCATTG-AAACAAGAACTATAACTCTACTAATTTTCGCA-TAAAA--ATATATGGCGCAAAGAAA-TTTGAGCCAGAGCCAGcc
gi|16 : ACTACATTGGAGGATATTAACTCGAATTTGGGTGTTATTGG----TTGG--TGT-A-AACA-A-TTGGATTTGTTATGCATGTCACGAGAAAATACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAT--ATAGAAAAACAAGAAGCCCTAT-AT---ATC--ATACATTATTGCTGTACTAGTTCAGTTGG-------------------AAATATAGAACAGCAC------GT--------ACAGAAAG--------GCTACTCTACCCTTATACAAGCTTCATCTT-GTAGAAGAATCAGATTAAGT-------CAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTTCGCTAATTTTCACA-GAACA--ATATATGGCGCAAAGAAATGTTGAGCCACAGCCAa
gi|17 : TTCCTGCTACAAGACCTGTGCACTTTTTGAC--ATAGGATAACAAGAGACCCTAT-ATAATAAC--ATATGTTATTGCTCTACTAGTTCAATTTGGTGCAAAGATTGTTTTTTGAAATATATAATAGCTT------ATAATT----ATGAAAAA-------------------CTTATACAAGCTTTATCTTCAGATAAGAATCAGATTAAGTTA-AATTCAA----AGGGAAAGATGCATGAGCTTCTATTG-AAACAAGGATTATAATTCTGCTAA-TTTCGCATAAAAA--ATATATGGCGCAAAGAAATTTTGAGCTAGA
gi|18 : TA-ACAGGTGCTTGGTCAAGTGACTTGTATACTAATAT-GGGAAAA--C-CCCA---------------GCTC----AACTTTATTTGCCATTATAACAGAGTAAAGCAGGTAACAACATTTTTAAAAA-TACCCCAGTACTTTATGTGTATTATA-AAATTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGCCTATAGC-AGTGTTTCTGAAATTCACACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-T
gi|19 : GAAATATATAATAGCAT------ATG--T----GAAAAAAG--------ACTTCTCTACTCTTATACAAGCTTTATCTT-ATATGATAATCAGAATAAGTTA-AAGTCAA----AAGTAAAGGTGCATGAGCGTCCATTG-AAACAAGAACTATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGGAATTTTGAGCCAGAGCCAG
gi|2 : ATAACACAAACGAATCTCAGATCAGCAATATGCGCTAAACATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTTACGTGACTTTCATTCAAGTAT-TGGAAAA--C-TCCAAAGAGGGCAAACAATGTTC----AGCTTTATTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGATTA-TACTTTATGTGTATTACC-AAGCTTATTTCCCACTTGACTATGTTTGTGTTTAAATCCAAAATGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAGTGG-AAAA-AA-GAACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTAATACATACA-------TGTAGTAATTATATT--GTTTGTCATAGGTTAAAACATTGATTAATCTCCGGGAGACTTCTGATAAATGGACACAGATGTGGGTGGGGTAATGTGAATACAATCACAGGCCCTATCTT-AC--TATAGCTTTTGGATAGCTATATTATA---------GTAAATAATCCATCATTTACTACATATCACTATCCTAAAGCTATAGTAACTGTAAGATAGGGTCTGTGAGACTGTGACTACATTTGAACATATTAACTTGAATTTGGGTGTTATAGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTGTGCATGTCACGAAAAAACAGGCCTTTCCTGCTACAAGACCTGTGCACTTTCAGAC--ATATGATAACAAGAGGCCCTAT-ATGATAAC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCCAAGATT-TTTTTGGAAATATATAATAGCAT------ATG--TGTAAAAAAAAAG--------ACTACTCTACTCTTATACAAGCTTTATCTT-CTGTAAGAATCAGATTAAGTTA-AAGTCAA----AGGGAAAGATGCATGAACGTACATTG-AAACAAGGACTATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGTGCAACGAAATTTTGAGCCAGAGCCAGc
gi|20 : CATTATAACTGAGAAAAACCGGTAACCAAATGTTTAAAAA-TAGACTAGCACTTAATGTGTATTACA-GAGTTTATTTCCCACTTTACTATGTTTGT
gi|21 : tTATA-GAGTTTATTTCCCACTTTACAATGTTTGTATTTAAATTCTAAATGCACC-TGATTTCAATATGGTGTCTACAGCGAGTGTTTCTGAAAt
gi|22 : T-ATATAAGAATCAGTTTAAATTA-AAGTCAA----AAGGA---------------CCA----AAAC------------TCTGCTAATTTTCGCA-AAA---------------AAAGAAATTTTGAGCCAGAGCCAGt
gi|23 : ACAACACAAACTA-TTTCAGATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-c
gi|24 : cacACAACACAAATGAATCTCAGATCAGCAATG-GAGCTAAATATAGTAACAATTTTCC
gi|26 : cacCATCAATTGATCTTCTGCAGATTCCTGATAAAT
gi|27 : atgAATGTGCTC--AATATAGTAACAATTT
gi|3 : aaGATCAGCAATATGCGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGACTTGCATA------------AAA--C-TCCAAAGAGGGTAAACAGTGTTC----AGCTTTCTTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTCAAAAA-TAGATAAGCACTTTATGTGTATAACC-AAGTTTATTTACCACGCGACTGTGTTTGTGTTTAAATTCAAAGTGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAG-AG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTATA-------TGTAGTAATTATATT--GTTTGTCACAGGCTAAAACATTGATTAATCTCCGGCAGACTTCTGATAAATGAACACAGAAGTGGATGGGGTAATGTGAATACAATgactt
gi|3 : TGACTACATTGGAACATATTAACTCGAATT-GGGTGTTATTGG----TATACATGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACCGGAAAACAC--CTTTCCTGCTACAAGACTTGTGCATTTTTAGAC--ATAGGATAACAATAGGCCCTAT-AAGATAGC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCAAAGATT-TTTTTTGAAATATATATTACCATATATGTGTG--T----AAAAAAAG--------ACTACTCTACTCTTATACAAGCTTTATCTT-TTGTAAGAATCAGATTAAGTGA-AAGTCAA----AGTAAAAGATGCATGAGCGTACATTG-AAACAAGGACTATAACTCTGTTAATTTTTGCA-GAAAA--ATATATGGTGCAAAGAAATTTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactacattggaacatattaactcgaattgggtgttattggtatacatgtaaaaattagatttgttatgcatgtcaccggaaaacacctttcctgctacaagacttgtgcatttttagacataggataacaataggccctataagatagcatatgttattgctctactaattcaatttggtgcaaagattttttttgaaatatatattaccatatatgtgtgtaaaaaaagactactctactcttatacaagctttatcttttgtaagaatcagattaagtgaaagtcaaagtaaaagatgcatgagcgtacattgaaacaaggactataactctgttaatttttgcagaaaaatatatggtgcaaagaaattttgagccagagccagcc
gi|4 : gatcagcaatatgcgctaaatatagtaacaattttccttaagaggtgcttggtcacgtgacttgcataaaactccaaagagggtaaacagtgttcagctttctttgtcatgctaactgagaaaagccggtaaccaaatgttcaaaaatagataagcactttatgtgtataaccaagtttatttaccacgcgactgtgtttgtgtttaaattcaaagtgcatatgatttcaatatggtgtctccagcgagtgtttctgaaacttgcaccttttaagagaaaaaagcacacacctcaatacacactttctatagggtattagtactgcttgatacttatatgtagtaattatattgtttgtcacaggctaaaacattgattaatctccggcagacttctgataaatgaacacagaagtggatggggtaatgtgaatacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACACATGCTTGGTCACGTGACTTGCATACTAGTAT-TGGAAAAAAT-CCCACAGAGTGCAAACAATGTTC----AGCTTTATTTGTCATTATAACTGAGAAAAGCCGGTAACTAAATGTTTAAAA--TAGGCCAGCACTTTATGT-------------TTATTTCCCACCTTACTTTGTTTGTGTTTAA-TGCTAAATGCAC---GATTTCAATAGGGTGTCTCCAGCGAGTGTTTCTGAAATTCACACCTTTTCCGTGA-AAAA-AAAGCACACACCTCAATACACACTTGTCTATAGG--------GTAA---T---AGTACTGCTTGATACTTACATCATACATGTAGTAATTATATT--CTTTTTCACAGGTTAAAACATTGATTGATCTTCTGCAGACTTCTGACAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATCACAAGCCATATTTTAACTATATAGCGTTAGGCTAGCTTTATCAAA---------GTAAATA----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--AGGATATTAACTCAAATTTGGGTGTAATTGG----CTTG--TGTAA-AA-A-A-ATAGATTTGTTATGCATGTTACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAT--GTAGGAAAACAAGAGGCCTTAT-ATG--------------ATTGCT---CTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATCGCAT------GTG--------CAAAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATAAAGTTA-AAGTCAA----AAGAAACGGTGCATGAGCGTCCATTGAAAACAAGGACCATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGAATTTTTGAGCCAGAGCCAGcc
gi|5 : ATCGGCAATGTGTGCTAAATATAGTAACAATATTGTTTA-ACAGGTGCTTGGTTACGTGACTTGCATACTAATAT-GGGAAAA--C-CCCAAAGAATGCAAACTATGCTCTGACAGCTTTATATGCCACAATAAGGGAGAAAAACTGGTTACCAAATTTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTACAGTGAGTGTTTCTGAAATTTACACCTTTTCTGTGG-AAAA-AC-ACACACACCTCAATACACACTT-TCTATTGG--------GTAT---T---AGTACTGCCTGATACTTACA-------TGTAGTAATTATATT--GTTTTACACAGGATAAAACATTGATTGATCTTCTGCAGACTTCTGATAAACAAACACAGAAGTGGGCGGGGTAATGCGACTACAAc
gi|5 : TTAACTCGAACTTGGGTGTTACTGG----TATG--TGT-A-AA-A-A-----ATTTGTTATGCACATTACAAGAAAACACAACTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ACAGGGAAACAAGAGGCCCTAT-ATGCTATC--ATATGTTATTGCTCTACTTGTTCAATTGGGTCCAAGGA-T-TTTTTGGAAATACAGAATAGCA--------CA--T----ACAGAAAG--------GCTGCCCTACCTTTATACAAGCTTTATTTT-ATAAAAGAACGAGAATAAGTTC-AAGGCAA----AA----------------GTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ACATATGGCGCAAATAAGTTTTGAGCCAGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtttaactcgaacttgggtgttactggtatgtgtaaaaaatttgttatgcacattacaagaaaacacaactttcctgccacaagacctgtgcacttttagacacagggaaacaagaggccctatatgctatcatatgttattgctctacttgttcaattgggtccaaggattttttggaaatacagaatagcacatacagaaaggctgccctacctttatacaagctttattttataaaagaacgagaataagttcaaggcaaaagtccattgaaacaaggaccataactctgctaattttcgcagaaaaacatatggcgcaaataagttttgagccagccc
gi|6 : atcggcaatgtgtgctaaatatagtaacaatattgtttaacaggtgcttggttacgtgacttgcatactaatatgggaaaaccccaaagaatgcaaactatgctctgacagctttatatgccacaataagggagaaaaactggttaccaaatttttaaaaatagaccagtactttatgtgtattataaagtttatttcccactttacaatgtttgtgtttaaattctaaatgcacatgatttcaatatggtgtctacagtgagtgtttctgaaatttacaccttttctgtggaaaaacacacacacctcaatacacactttctattgggtattagtactgcctgatacttacatgtagtaattatattgttttacacaggataaaacattgattgatcttctgcagacttctgataaacaaacacagaagtgggcggggtaatgcgactacaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtAACACAAACCAATTTCAGATCAGCAATGTGTACTTAATATAGTAACAATTTTCCTTATATATATAT------ATATAA--TA-ATACTAATAT-AGGAAAA--AACCCAAAGAGTGCAAACAATACTC----AGCTTTATTTGCCATTATAACGGAGAAAAGCTGCTAACCAAATTTTTAAAAA-TAAACCAGTATATTATGTGTATTATA-AAGTTTATTTCCCACTTCATT---TTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTGCAGCGAGTGTTTCTGAAATTCTCACCTTTTCTGTGG-AAAA-AA-GCTCTCGCCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAAGTTAAAACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATccc
gi|6 : ACATTGGAGGATATTAAC-------------------------TTA--T--------A-A-TTAGATTTGTAATGCATATTTCAAGAAAACACATCTTTCCTGCCACAAGACCTATGCACTTTTAGA----TAGGAAAACAAGAGACCATATTATGATAC-----ATGTTATTGCTCTACTAGTTCAGTTGAATGCAAGGATT-TTTTTG-AAATATAGAATAGCAT------GTG--C----AAC--AAG--------GCTACTCTATTCTTATACAAGCTTTATCTT-ATAAAAGAATCAGATTAAGT-------CAA----AAGGACCAGTGCATGAGGGTTCGTTG-AAACAAGGACCAGAACTCTGCTCATTTTCACA-GAAAA--ATATATGGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattggaggatattaacttataattagatttgtaatgcatatttcaagaaaacacatctttcctgccacaagacctatgcacttttagataggaaaacaagagaccatattatgatacatgttattgctctactagttcagttgaatgcaaggatttttttgaaatatagaatagcatgtgcaacaaggctactctattcttatacaagctttatcttataaaagaatcagattaagtcaaaaggaccagtgcatgagggttcgttgaaacaaggaccagaactctgctcattttcacagaaaaatatatggcg
gi|7 : aacacaaaccaatttcagatcagcaatgtgtacttaatatagtaacaattttccttatatatatatatataataatactaatataggaaaaaacccaaagagtgcaaacaatactcagctttatttgccattataacggagaaaagctgctaaccaaatttttaaaaataaaccagtatattatgtgtattataaagtttatttcccacttcatttttgtgtttaaattctaaatgcacatgatttcaatatggtgtctgcagcgagtgtttctgaaattctcaccttttctgtggaaaaaagctctcgcctcaatacacactttctatagggtattagtactgcttgatacttacatgtagtaattatattgtttttcacaagttaaaacattgattgatcttctgcagacttctgataaatgaacacagaagtgggtggggtaatgtgactacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATCAGCAATGTGTGCTAAGTATAGTATCCATTTTCCTTA-ACAGGTGCTTGGTCACTTGACTTGCATACTAATGT-GGGAAAA--C-CCCAAAAAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAATGGAGAAAATCTGGTAACTAAATTTTTAAAAAATAGACGAGTACTTTATGTATATTATA-AAGTTTAGTTCCCACTTTACAATGTTTGTGTTTAAATTCTTAATGCACA-TGATTTCAATA--ATGTCTGCAGCGAATGTTTC--AAATTCACACTTTTTCTGTGG-AAAA-AA-GTACACACCTCAATACACACTT-TCTATAGGGTATTAGGGTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGATTAATACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATCACAGGCAATTTATT-AC--TATAGCCTCTGGACAGATATATTATA---------GTAAATAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGACCTCATTGGAGGATATTAAGTTGAATTTGGGTGTTGCTGG----TTTG--TATAA-AA-A-A-TTATATTTGTTATGCATATTACAAGAAAAGATATCTTTCCTGCCACAAGACCTTTGCACTTTTAGAC--AAAGGAAAACAAGAGGCCCCAT-ATGCTATC--AAACGTTATTGCTCTACTAGTTCTATTGGGTTCAAGGA-T-ATTTTGG----ATAGAATAGC-----------------------AAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATT
gi|8 : TGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTTTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTAAATACACACTT-TCTATTGG--------GTAT---T---AGTATTGCTTGATACTTACA-------TGTTATAATTTTATT--GTTTTTCACAGGTTAAAACATTGATAAATCTCTTGCAGATTTCTGATAAATGAACACAGAAGTGGGTGGGGCAATGTGAA-ACAAT
gi|8 : gaaGACTACATTGGAAGATATTAACTTGAATTTGGGTGTTACTGG----TTTG--TGT---AA-A-A-TT--------------TGTCACGAGAAAACACATTTTTCCTGCTACAAGACCTGTGCACTTTTAGACATATAGGATAAAAAGAGGCCCTAT-ATGATAGCATATATGTTATTGTTCTACCAGTTCAATTTGGTGCAAAGATT-TTTTTGGAAATAAATAATAGCAT------ATG--T----GAAAAAAG----------------ACTCTTATACAAGGTTTATCTT-ATATTAGAATCAGAATAAGTTT-AAGTCAA----AAGTAAAGGTGCATGAGCATCCATTG-AAACAAGGACTGTAACTCTGCTTTTTTTCTCA-GAAAA--ATATATGGTGTAAAGAAATTTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactacattggaagatattaacttgaatttgggtgttactggtttgtgtaaaatttgtcacgagaaaacacatttttcctgctacaagacctgtgcacttttagacatataggataaaaagaggccctatatgatagcatatatgttattgttctaccagttcaatttggtgcaaagatttttttggaaataaataatagcatatgtgaaaaaagactcttatacaaggtttatcttatattagaatcagaataagtttaagtcaaaagtaaaggtgcatgagcatccattgaaacaaggactgtaactctgctttttttctcagaaaaatatatggtgtaaagaaattttgagccagagccagct
gi|9 : gaatgtgtttaaatcctaaatgcacatgatttcaatatggtgtctccagcgagtgtttttgaaactcgcaccttttctgtggaaaaaagcacacacctaaatacacactttctattgggtattagtattgcttgatacttacatgttataattttattgtttttcacaggttaaaacattgataaatctcttgcagatttctgataaatgaacacagaagtgggtggggcaatgtgaaacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--C-CCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAATAA-GCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATANNNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTATTGG----TTTG--TGT-A-AA-A-A-ATAGATTTGTTATGCATGTCACGTGAAAACACATCTTTCCTGCTACAAGACCTGTGCACTTTTAGAC--ATAGGATAACAAGct
blockSeqs : T A GT AA A T TGAC TT A A C T . C A . T A G GTATTAGG . . TCATACA TG A NNN N A TA N NNNNNNNTTGTATATAGNNN NNNNNNNNNNNNNNNNNNNNNN T AAAG CA A G C A AT A AT T T T T AT C T G G TATATGTGTGTAA G G C C TAAT T A A T CT
blockSeqs : . T T . . A . TA A . A A . A A . T . . . . . . . C NNN N . . N NNNNNNNTTGTATATAGNNN NNNNNNNNNNNNNNNNNNNNNN C . . A . . . AT A . A . C T . C T . A TATGTGTAAAA G G . . . G C . . .
blockSeqs : . T G . . A . GC T . A A . A A . . . . . . . . . C CAC N . . N GTAAATAATCC AGTAACTGTAAGATAGGGTCTG C . . A . . . A T . A . C T . C T . G TATAATTAT G G . . . G C . . .
blockSeqs : . A T . . A . TA T . C T . C G . . . . . . . . . A CAC C . . T NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNN C . . . . . . T A . A . C T . C T . G TATGTGA G G . . . G A . . .
blockSeqs : . T T . . C . GC T . A T . A G . . . . . . . . . A CAC T . . G NNNNNNCC NNNNNNNNNNNNNNNNNNNNNN T . . . . . . T A . A . A T . G T . T TGTGCAA G G . . . G A . . .
blockSeqs : . T G . . A . TA T . A A . C A . . . . . . . . . C NNN A . . C GTAAATAA NNNNNNNNNNNNNNNNNNNNNN T . . . . . . A A . A . A A . G T . T TATGTGA A A . . . T A . . .
blockSeqs : . T A . . A . AA G . C T . C A . . . . . . . . . C . N . . N GTAAATA AGTAAGATAGGGCCAG T . . . . . . T G . T . A A . G T . T TGTAC A A . . . G A . . .
blockSeqs : . T G . . A . TA G . A T . A T . . . . . . . . . C . T . . . . . . T A . T . C G . G . . T TGTGT A A . . . G A . . .
blockSeqs : . A T . . T . TA G . A A . G A . . . . . . . . . C C . . . . . . T A . T . A T . C . . G TGTAC A G . . . A C . . .
blockSeqs : . . . . . . . . . . A T . G G . . . . . . . . . A C . . . . . . A A . A . C C . G . . G TGTAC A G . . . A C . . .
blockSeqs : . . . . C A . C A . . . . . . . . . A C . . . . . . T A . A . A T . T . . G CGTAC G G . . . G A . . .
blockSeqs : . T . C T . . . . . . T A . A . . G . G . . G TGTGC A G . . . T . . . .
blockSeqs : . . . . . . . T A . A . . . . . . . T CATAC . . . . . . . . . .
blockSeqs : . . . . . . . A . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T .
blockSeqCons : A* *** *** CAC GTANATAGC*********** TGTAC************** G********
originalCons : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATA---------GTANATAG-CCATCATTTACTACATATCACTATCCCAAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGCAT------GTG--T----ANAGAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
finalCons : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATAGTANATAGC-----------ATCATTTACTACATATCACTATCCCAAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-A-A-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGCATGTAC--------------AGAAAGG--------CTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GCCCTGTCTAGGAATCATAACTTGATTGTTACACAAA
Alignments
lowQualScore : 11111111 1111111 44444444444444444444 3333333333333333333333 11111111 1111111111
lowQualScore : 3 2 55 55 3 2 7777 66 3 3 0 55 1 0 3 1 3 3 6 3 3 22222222 555 555 0000000 44 1 6 00 0 1 4 66 1 0 0 0 0 0 11111111111111111111 00 0 00 0000000000000000000000 1 5555 33 7 2 2 88 1 33 1 2 4 2 33 2 6 2 2 77 33333333 2222222222 2 99999999 2 2 5555 2 2 2 2 33
lowQualScore : . . .. .. . . .... .. . . . .. . . . . . . . . . ........ ... ... ....... .. . . .. . . . .. . . . . . . .................... .. . .. ...................... . .... .. . . . .. . .. . . . . .. . . . . .. ........ .......... . ........ . . .... . . . . ..
lowQualScore : 3 6 77 00 6 4 7777 55 3 3 8 22 0 5 1 5 5 3 7 3 3 11111111 888 888 8888888 66 0 6 44 6 0 4 11 0 6 3 1 6 6 33333333333333333333 44 3 99 0000000000000000000000 7 3333 44 5 5 5 11 2 44 0 9 8 6 99 5 7 9 7 33 33333333 1111111111 7 77777777 5 7 7777 1 2 7 7 77
consensus : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATA---------GTANATAG--CATCATTTACTACATATCACTATCCCNAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-AA-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGC--AT--------GT------G--CA-GAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
Reference ( family-5849 ) : ACAACACAAACGAATCTCAGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACTAATAT-TGGAAAA--C-CCCAAAGAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAACNGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGACCAGCACTTTATGTGTATTACA-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGTTAAAACATTGATTGATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGANTACAATCACAGGCCATATNTT-AC--TATAGCNTTTGGATAGCTATATTATA---------GTANATAG--CATCATTTACTACATATCACTATCCCAAAGCTATAGTAACTGTAAGATAGGGCCNGTGAGGCTGTGACTACATTGGAGGATATTAACTCGAATTTGGGTGTTACTGG----TTTG--TGT-A-AA-AA-TTAGATTTGTTATGCATGTCACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGANAACAAGAGGCCCTAT-ATGNTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATAGC--AT--------GT------A--CA-GAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATTAAGTTA-AAGTCAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAG
gi|1 : ACAACACAAACAAATCTCAGATCAGCAATGTGGGCTTAATATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTCACATGAATTGCATACAAATAT-TGGAAAA--C-CCCAAAGAGTGCAAATAATGTTC----AGCTTTATTTGTCATTACAGCTGAGAAAAGCCGGTAACTAAATGTTTAAAAG-TAGACTAGCACTTTAAGTGTATTACCTAAGTTTTTTTCCTACTTTACTATGTTTGTGTTTAAATCATAAATGCACATTGATTTCAATATGCTGTCTCCAGCGAGTGTTTCTGAAACTCTCACCTTTTTTGTGGAAAAA-AA-GCACACACCTCAAAAGACACTT-TGTATAGG--------GTATACATGTAAGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--G-TTTTCATAGGTTAAAACATTGATTAATCTCCTGCAGACTTCTGGTAAATGAACAC---ATTGGGTGGGGTAATGTGAATAAAAT--NNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTACATTGGAACATATTAACTCGAATTTGGGTGTTATTGG----TTTG--TGT-A-AA-AA-TTAGATTTGTTATGCATGTCACGAGAAAACCC--CTTTCCTGCTACAAGACCTGTGCACTTTTAGAC--ATAGGATAACAAGAGGCCCTAT-ATGATAGC--ATATGATATTGCTCTACTAGTTCAATTTGGTGCAAAGATT-TTTTTTTTAATAT--AATAGCATAT--------GT------G--AA-AAAAGACTACTCTACTACTCTACTCTTATACAAGCTTTATCTT-CTGTAAGAATCAGATGAAGTTA-AAGTCAA----AGGTAAAGATACATGAGCGTACATTG-ATACAAGGG----AGCTCTGCTTATTTTCACA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCAAGAGCCAG
gi|10 : ACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--C-CCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAATAA-GCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATANNNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTATTGG----TTTG--TGT-A-AA-AA-ATAGATTTGTTATGCATGTCACGTGAAAACACATCTTTCCTGCTACAAGACCTGTGCATTTTTAGAC--ATAGGATAACAAGcg
gi|11 : cATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGGCTTGCATTCTAATATGTG-------------AAGAGTGCAAACAATGCTA----AGCTTTATTTGCCATTTTAACAGAGAAAAGCCGGT-----AATGTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTAACAATGTTTGTGTTTAAATTCTAAATGCACA-TCATTTCAATATGGTGTCTACAGCAAGTGTTTCTGAAATTCACGCCTTTTCTGTGG-AAAA-AA-GCACACGCCTCAATACACACTT-TCTATAGG--------GCAT---T---AGTACTGCTTGATACTTACA-------TATAGTAATTA-ATTTGGTTTAT--CAGGTTAAAACATTGATTGATTTTCTACAGTCTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAAT----NNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGACCACATTGGAGGATATTAACTCAAATTTGGGTGTTACTGG----TTTG--TGTAA-AA-AA-TTAGATTTGTTATGCATATTACAAGAACATGCATCTTTCCTTCCACACGAC
gi|12 : TAGG--------GTTT---T---AGTACTGCTTGATACTTACA-------TGTAGTAGTTGTATT--GTTTTTCACAGGTTAAAACATTGATTGATCTT-TGATGAATT--GATAAATGAACGCAGAAGTGGGTTGGGTAATGTGACTACAATNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNC---CATCATTTACTACATATCATTATCCCTAAGCCAT----------------------TGAGGCTGTGACCACATTGGAGGATATTGACTGGAATTTGGGTGTTACTAGAAAGTTTG--TGT-A-AA-AAATTAGATTTGTTATGCATATTACGAGAAAACA--TCATTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCTCTAT-ATGTTATC--ATATGTTATTGCTCTACTAGTTCAACTGGGTCCAGGGATT-TTTTTGGAAATATAGAATAGC--AT--------GT------A--CA-GAAAG--------GCTACTCTGCCCTTATGCAAGCTTTATCTT-AAATAAGAAT-A----AAGTTA-AAGTAAATAATAAGTTAAAGTA---AAAAGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCTCAAAGAAATTTTGAGCCAGAGCCA
gi|13 : AAAGCTGTAGTAA------GATAGGGCCAGTGAGGCTGTATCCACATTGGAGGATATTAACTCGAATTTAGGTGTT-----------TG--TGT-A-AA-AAATTAGATTTGTTATGCATATTATGAGAAAACACTTCTTTCCTTCCACAAGACCTGGGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTAC-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTCAAAGGATT-TT-TTGGAAATATAAGATAGC--AT--------GT------G--TA-GAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATAAAAGCATCATATTAAGTTA-CAGTCAA----ATGGAACGGTGCATGAGCGTCCACTG-AAACAAGGACCATAACTCTGCTAATTTCAGCA-GAAAACTATATATGGGGCAAAGAAAATTTGAGCCAGAGCCAG
gi|14 : ctataatctgtTACATTGGAGGATATTAACTTGAATTTGG--------------TTTG--TGT-A-AA-AAATTGGATTTGTTATGCATATTACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ATAGGAAAACAAGAGGCCCTGT-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGGGTCCAAGGA-T-ATTTTGGAAAT-----ATAGC--AT--------GT------A--CA-GAAAG--------GCTACTCTACCCTTATACAAGTTTTATCTT-CTATAAGAATCAGATTAAGTTACAAGTCGA----AAGGAACGGTGCGTGAGTGTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGCGCAAAGAAATTTTGAGCCAGAGCCAGc
gi|15 : GTGACCACTTTGGAGGATATTAACTCGAATTTGGAAGTTACTGG----TTTG--TGA-AGAA-AA-ATAGATTTGTTATGCATTTAACAAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTTGAC--ACAGGAAAACAAGAGGCCCAAT-ATGCTATC--ATATGTTATTGCTCTACTAGTTCAATTGAGTCCAAGGA---TTTTTGGAAATATAGAATAGC--AT--------GT------A--CA-GAAAG--------GCTACTTTTTCTTAATACAAGCTTTATCTT-ATGTAAGGATTAGATTAATTTC-AAGTCAA----------------------GTCCATTG-AAACAAGAACTATAACTCTACTAATTTTCGCA-TAAAA--ATATATGGCGCAAAGAAA-TTTGAGCCAGAGCCAGcc
gi|16 : ACTACATTGGAGGATATTAACTCGAATTTGGGTGTTATTGG----TTGG--TGT-A-AACAA-TTGGATTTGTTATGCATGTCACGAGAAAATACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAT--ATAGAAAAACAAGAAGCCCTAT-AT---ATC--ATACATTATTGCTGTACTAGTTCAGTTGG-------------------AAATATAGAACAGC--AC--------GT------A--CA-GAAAG--------GCTACTCTACCCTTATACAAGCTTCATCTT-GTAGAAGAATCAGATTAAGT-------CAA----AAGGAAAGGTGCATGAGCGTCCATTG-AAACAAGGACCATAACTTCGCTAATTTTCACA-GAACA--ATATATGGCGCAAAGAAATGTTGAGCCACAGCCAa
gi|17 : TTCCTGCTACAAGACCTGTGCACTTTTTGAC--ATAGGATAACAAGAGACCCTAT-ATAATAAC--ATATGTTATTGCTCTACTAGTTCAATTTGGTGCAAAGATTGTTTTTTGAAATATATAATAGC--TT--------AT------AATTATGAAAA--------ACT----------TATACAAGCTTTATCTTCAGATAAGAATCAGATTAAGTTA-AATTCAA----AGGGAAAGATGCATGAGCTTCTATTG-AAACAAGGATTATAATTCTGCTAA-TTTCGCATAAAAA--ATATATGGCGCAAAGAAATTTTGAGCTAGA
gi|18 : TA-ACAGGTGCTTGGTCAAGTGACTTGTATACTAATAT-GGGAAAA--C-CCCA---------------GCTC----AACTTTATTTGCCATTATAACAGAGTAAAGCAGGTAACAACATTTTTAAAAA-TACCCCAGTACTTTATGTGTATTATA-AAATTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGCCTATAGC-AGTGTTTCTGAAATTCACACCTTTTCTGTGG-AAAA-AA-GCACACACCTCAATACACACTT-T
gi|19 : GAAATATATAATAGC--ATAT------GT------G--AA-AAAAG--------ACTTCTCTACTCTTATACAAGCTTTATCTT-ATATGATAATCAGAATAAGTTA-AAGTCAA----AAGTAAAGGTGCATGAGCGTCCATTG-AAACAAGAACTATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGGAATTTTGAGCCAGAGCCAG
gi|2 : ATAACACAAACGAATCTCAGATCAGCAATATGCGCTAAACATAGTAACAATTTTCCTTA-ACAGGTGCTTGGTTACGTGACTTTCATTCAAGTAT-TGGAAAA--C-TCCAAAGAGGGCAAACAATGTTC----AGCTTTATTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTTAAAAA-TAGATTA-TACTTTATGTGTATTACC-AAGCTTATTTCCCACTTGACTATGTTTGTGTTTAAATCCAAAATGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAGTGG-AAAA-AA-GAACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTAATACATACA-------TGTAGTAATTATATT--GTTTGTCATAGGTTAAAACATTGATTAATCTCCGGGAGACTTCTGATAAATGGACACAGATGTGGGTGGGGTAATGTGAATACAATCACAGGCCCTATCTT-AC--TATAGCTTTTGGATAGCTATATTATA---------GTAAATAATCCATCATTTACTACATATCACTATCCTAAAGCTATAGTAACTGTAAGATAGGGTCTGTGAGACTGTGACTACATTTGAACATATTAACTTGAATTTGGGTGTTATAGG----TTTG--TGT-A-AA-AA-TTAGATTTGTTGTGCATGTCACGAAAAAACAGGCCTTTCCTGCTACAAGACCTGTGCACTTTCAGAC--ATATGATAACAAGAGGCCCTAT-ATGATAAC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCCAAGATT-TTTTTGGAAATATATAATAGC--AT--------ATGTGTAAA--AA-AAAAG--------ACTACTCTACTCTTATACAAGCTTTATCTT-CTGTAAGAATCAGATTAAGTTA-AAGTCAA----AGGGAAAGATGCATGAACGTACATTG-AAACAAGGACTATAACTCTGCTAATTTTTGCA-GAAAA--ATATATGGTGCAACGAAATTTTGAGCCAGAGCCAGc
gi|20 : CATTATAACTGAGAAAAACCGGTAACCAAATGTTTAAAAA-TAGACTAGCACTTAATGTGTATTACA-GAGTTTATTTCCCACTTTACTATGTTTGT
gi|21 : tTATA-GAGTTTATTTCCCACTTTACAATGTTTGTATTTAAATTCTAAATGCACC-TGATTTCAATATGGTGTCTACAGCGAGTGTTTCTGAAAt
gi|22 : T-ATATAAGAATCAGTTTAAATTA-AAGTCAA----AAGGA---------------CCA----AAAC------------TCTGCTAATTTTCGCA-AAA---------------AAAGAAATTTTGAGCCAGAGCCAGt
gi|23 : ACAACACAAACTA-TTTCAGATCAGCAATATGTGCTAAATATAGTAACAATTTTCCTTA-c
gi|24 : cacACAACACAAATGAATCTCAGATCAGCAATG-GAGCTAAATATAGTAACAATTTTCC
gi|26 : cacCATCAATTGATCTTCTGCAGATTCCTGATAAAT
gi|27 : atgAATGTGCTC--AATATAGTAACAATTT
gi|3 : aaGATCAGCAATATGCGCTAAATATAGTAACAATTTTCCTTA-AGAGGTGCTTGGTCACGTGACTTGCATA------------AAA--C-TCCAAAGAGGGTAAACAGTGTTC----AGCTTTCTTTGTCATGCTAACTGAGAAAAGCCGGTAACCAAATGTTCAAAAA-TAGATAAGCACTTTATGTGTATAACC-AAGTTTATTTACCACGCGACTGTGTTTGTGTTTAAATTCAAAGTGCATA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTCTGAAACTTGCACCTTTTAAG-AG-AAAA-AA-GCACACACCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTATA-------TGTAGTAATTATATT--GTTTGTCACAGGCTAAAACATTGATTAATCTCCGGCAGACTTCTGATAAATGAACACAGAAGTGGATGGGGTAATGTGAATACAATgactt
gi|3 : TGACTACATTGGAACATATTAACTCGAATT-GGGTGTTATTGG----TATACATGT-A-AA-AA-TTAGATTTGTTATGCATGTCACCGGAAAACAC--CTTTCCTGCTACAAGACTTGTGCATTTTTAGAC--ATAGGATAACAATAGGCCCTAT-AAGATAGC--ATATGTTATTGCTCTACTAATTCAATTTGGTGCAAAGATT-TTTTTTGAAATATATATTACC--ATATATGTGTGT------A--AA-AAAAG--------ACTACTCTACTCTTATACAAGCTTTATCTT-TTGTAAGAATCAGATTAAGTGA-AAGTCAA----AGTAAAAGATGCATGAGCGTACATTG-AAACAAGGACTATAACTCTGTTAATTTTTGCA-GAAAA--ATATATGGTGCAAAGAAATTTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactacattggaacatattaactcgaattgggtgttattggtatacatgtaaaaattagatttgttatgcatgtcaccggaaaacacctttcctgctacaagacttgtgcatttttagacataggataacaataggccctataagatagcatatgttattgctctactaattcaatttggtgcaaagattttttttgaaatatatattaccatatatgtgtgtaaaaaaagactactctactcttatacaagctttatcttttgtaagaatcagattaagtgaaagtcaaagtaaaagatgcatgagcgtacattgaaacaaggactataactctgttaatttttgcagaaaaatatatggtgcaaagaaattttgagccagagccagcc
gi|4 : gatcagcaatatgcgctaaatatagtaacaattttccttaagaggtgcttggtcacgtgacttgcataaaactccaaagagggtaaacagtgttcagctttctttgtcatgctaactgagaaaagccggtaaccaaatgttcaaaaatagataagcactttatgtgtataaccaagtttatttaccacgcgactgtgtttgtgtttaaattcaaagtgcatatgatttcaatatggtgtctccagcgagtgtttctgaaacttgcaccttttaagagaaaaaagcacacacctcaatacacactttctatagggtattagtactgcttgatacttatatgtagtaattatattgtttgtcacaggctaaaacattgattaatctccggcagacttctgataaatgaacacagaagtggatggggtaatgtgaatacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATCAGCAATGTGCGCTAAATATAGTAACAATTTTCCTTA-ACACATGCTTGGTCACGTGACTTGCATACTAGTAT-TGGAAAAAAT-CCCACAGAGTGCAAACAATGTTC----AGCTTTATTTGTCATTATAACTGAGAAAAGCCGGTAACTAAATGTTTAAAA--TAGGCCAGCACTTTATGT-------------TTATTTCCCACCTTACTTTGTTTGTGTTTAA-TGCTAAATGCAC---GATTTCAATAGGGTGTCTCCAGCGAGTGTTTCTGAAATTCACACCTTTTCCGTGA-AAAA-AAAGCACACACCTCAATACACACTTGTCTATAGG--------GTAA---T---AGTACTGCTTGATACTTACATCATACATGTAGTAATTATATT--CTTTTTCACAGGTTAAAACATTGATTGATCTTCTGCAGACTTCTGACAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATCACAAGCCATATTTTAACTATATAGCGTTAGGCTAGCTTTATCAAA---------GTAAATA----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--AGGATATTAACTCAAATTTGGGTGTAATTGG----CTTG--TGTAA-AA-AA-ATAGATTTGTTATGCATGTTACGAGAAAACACATCTTTCCTGCCACAAGACCTGTGCACTTTTAGAT--GTAGGAAAACAAGAGGCCTTAT-ATG--------------ATTGCT---CTAGTTCAATTGGGTGCAAGGATT-TTTTTGGAAATATAGAATCGC--AT--------GT------G--CA-AAAAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATAAAGTTA-AAGTCAA----AAGAAACGGTGCATGAGCGTCCATTGAAAACAAGGACCATAACTCTGCTAATTTTCACA-GAAAA--ATATATGGCGCAAAGAATTTTTGAGCCAGAGCCAGcc
gi|5 : ATCGGCAATGTGTGCTAAATATAGTAACAATATTGTTTA-ACAGGTGCTTGGTTACGTGACTTGCATACTAATAT-GGGAAAA--C-CCCAAAGAATGCAAACTATGCTCTGACAGCTTTATATGCCACAATAAGGGAGAAAAACTGGTTACCAAATTTTTAAAAA-TAGACCAGTACTTTATGTGTATTATA-AAGTTTATTTCCCACTTTACAATGTTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTACAGTGAGTGTTTCTGAAATTTACACCTTTTCTGTGG-AAAA-AC-ACACACACCTCAATACACACTT-TCTATTGG--------GTAT---T---AGTACTGCCTGATACTTACA-------TGTAGTAATTATATT--GTTTTACACAGGATAAAACATTGATTGATCTTCTGCAGACTTCTGATAAACAAACACAGAAGTGGGCGGGGTAATGCGACTACAAc
gi|5 : TTAACTCGAACTTGGGTGTTACTGG----TATG--TGT-A-AA-AA-----ATTTGTTATGCACATTACAAGAAAACACAACTTTCCTGCCACAAGACCTGTGCACTTTTAGAC--ACAGGGAAACAAGAGGCCCTAT-ATGCTATC--ATATGTTATTGCTCTACTTGTTCAATTGGGTCCAAGGA-T-TTTTTGGAAATACAGAATAGC--AC--------AT------A--CA-GAAAG--------GCTGCCCTACCTTTATACAAGCTTTATTTT-ATAAAAGAACGAGAATAAGTTC-AAGGCAA----AA----------------GTCCATTG-AAACAAGGACCATAACTCTGCTAATTTTCGCA-GAAAA--ACATATGGCGCAAATAAGTTTTGAGCCAGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtttaactcgaacttgggtgttactggtatgtgtaaaaaatttgttatgcacattacaagaaaacacaactttcctgccacaagacctgtgcacttttagacacagggaaacaagaggccctatatgctatcatatgttattgctctacttgttcaattgggtccaaggattttttggaaatacagaatagcacatacagaaaggctgccctacctttatacaagctttattttataaaagaacgagaataagttcaaggcaaaagtccattgaaacaaggaccataactctgctaattttcgcagaaaaacatatggcgcaaataagttttgagccagccc
gi|6 : atcggcaatgtgtgctaaatatagtaacaatattgtttaacaggtgcttggttacgtgacttgcatactaatatgggaaaaccccaaagaatgcaaactatgctctgacagctttatatgccacaataagggagaaaaactggttaccaaatttttaaaaatagaccagtactttatgtgtattataaagtttatttcccactttacaatgtttgtgtttaaattctaaatgcacatgatttcaatatggtgtctacagtgagtgtttctgaaatttacaccttttctgtggaaaaacacacacacctcaatacacactttctattgggtattagtactgcctgatacttacatgtagtaattatattgttttacacaggataaaacattgattgatcttctgcagacttctgataaacaaacacagaagtgggcggggtaatgcgactacaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtAACACAAACCAATTTCAGATCAGCAATGTGTACTTAATATAGTAACAATTTTCCTTATATATATAT------ATATAA--TA-ATACTAATAT-AGGAAAA--AACCCAAAGAGTGCAAACAATACTC----AGCTTTATTTGCCATTATAACGGAGAAAAGCTGCTAACCAAATTTTTAAAAA-TAAACCAGTATATTATGTGTATTATA-AAGTTTATTTCCCACTTCATT---TTTGTGTTTAAATTCTAAATGCACA-TGATTTCAATATGGTGTCTGCAGCGAGTGTTTCTGAAATTCTCACCTTTTCTGTGG-AAAA-AA-GCTCTCGCCTCAATACACACTT-TCTATAGG--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAAGTTAAAACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGT-----GGGTGGGGT-AATGTGACTACAATNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGGAGGATATTAAC-------------------------TTA--T--------AA-TTAGATTTGTAATGCATATTTCAAGAAAACACATCTTTCCTGCCACAAGACCTATGCACTTTTAGA----TAGGAAAACAAGAGACCATATTATGATAC-----ATGTTATTGCTCTACTAGTTCAGTTGAATGCAAGGATT-TTTTTG-AAATATAGAATAGC--AT--------GT------G--CA-ACAAG--------GCTACTCTATTCTTATACAAGCTTTATCTT-ATAAAAGAATCAGATT-------AAGTCAA----AAGGACCAGTGCATGAGGGTTCGTTG-AAACAAGGACCAGAACTCTGCTCATTTTCACA-GAAAA--ATATATGGCGccc
gi|7 : AGATCAGCAATGTGTGCTAAGTATAGTATCCATTTTCCTTA-ACAGGTGCTTGGTCACTTGACTTGCATACTAATGT-GGGAAAA--C-CCCAAAAAGTGCAAACAATGCTC----AGCTTTATTTGCCATTATAATGGAGAAAATCTGGTAACTAAATTTTTAAAAAATAGACGAGTACTTTATGTATATTATA-AAGTTTAGTTCCCACTTTACAATGTTTGTGTTTAAATTCTTAATGCACA-TGATTTCAATA--ATGTCTGCAGCGAATGTTTC--AAATTCACACTTTTTCTGTGG-AAAA-AA-GTACACACCTCAATACACACTT-TCTATAGGGTATTAGGGTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGATTAATACATTGATTGATCTTCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGACTACAATCACAGGCAATTTATT-AC--TATAGCCTCTGGACAGATATATTATA---------GTAAATAA------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGTGACCTCATTGGAGGATATTAAGTTGAATTTGGGTGTTGCTGG----TTTG--TATAA-AA-AA-TTATATTTGTTATGCATATTACAAGAAAAGATATCTTTCCTGCCACAAGACCTTTGCACTTTTAGAC--AAAGGAAAACAAGAGGCCCCAT-ATGCTATC--AAACGTTATTGCTCTACTAGTTCTATTGGGTTCAAGGA-T-ATTTTGG----ATAGAATAGC----------------------------AAG--------GCTACTCTACCCTTATACAAGCTTTATCTT-ATATAAGAATCAGATT
gi|8 : TGTGTTTAAATCCTAAATGCACA-TGATTTCAATATGGTGTCTCCAGCGAGTGTTTTTGAAACTCGCACCTTTTCTGTGG-AAAA-AA-GCACACACCTAAATACACACTT-TCTATTGG--------GTAT---T---AGTATTGCTTGATACTTACA-------TGTTATAATTTTATT--GTTTTTCACAGGTTAAAACATTGATAAATCTCTTGCAGATTTCTGATAAATGAACACAGAAGTGGGTGGGGCAATGTGAA-ACAAT
gi|8 : gaaGACTACATTGGAAGATATTAACTTGAATTTGGGTGTTACTGG----TTTG--TGT---AA-AA-TT--------------TGTCACGAGAAAACACATTTTTCCTGCTACAAGACCTGTGCACTTTTAGACATATAGGATAAAAAGAGGCCCTAT-ATGATAGCATATATGTTATTGTTCTACCAGTTCAATTTGGTGCAAAGATT-TTTTTGGAAATAAATAATAGCATAT--------GT------G--AA-AAAAG----------------ACTCTTATACAAGGTTTATCTT-ATATTAGAATCAGAATAAGTTT-AAGTCAA----AAGTAAAGGTGCATGAGCATCCATTG-AAACAAGGACTGTAACTCTGCTTTTTTTCTCA-GAAAA--ATATATGGTGTAAAGAAATTTTGAGCCAGAGCCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactacattggaagatattaacttgaatttgggtgttactggtttgtgtaaaatttgtcacgagaaaacacatttttcctgctacaagacctgtgcacttttagacatataggataaaaagaggccctatatgatagcatatatgttattgttctaccagttcaatttggtgcaaagatttttttggaaataaataatagcatatgtgaaaaaagactcttatacaaggtttatcttatattagaatcagaataagtttaagtcaaaagtaaaggtgcatgagcatccattgaaacaaggactgtaactctgctttttttctcagaaaaatatatggtgtaaagaaattttgagccagagccagct
gi|9 : gaatgtgtttaaatcctaaatgcacatgatttcaatatggtgtctccagcgagtgtttttgaaactcgcaccttttctgtggaaaaaagcacacacctaaatacacactttctattgggtattagtattgcttgatacttacatgttataattttattgtttttcacaggttaaaacattgataaatctcttgcagatttctgataaatgaacacagaagtgggtggggcaatgtgaaacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACACAAACGAATCTCAGATCAGCAATGTGCACTAAATATAGGAACAATTTTCCTTA-ACAGGTGCTTGGTCACGTGACTTGCATACAAGTAT-TGGAAAA--C-CCCTTAAAGTGCAAACAGTGTTC----AGCTTTATTTGTCAT-------------AGCCAGTAACCAAATGTTTAAAAA-TAGACTAGCACTTTATGTGTATTACC-AAGTTTATTTCCCACTTTACTATGTTTGTGTTTAAATCGTAAATGCACA-TGACTTAAATATGATGTCTCCAGCCAGTGTTTCTGAAACTCACACCTTTTCTGTGG-AAAATAA-GCACACACCTCAATACACACTT-TCTATA-G--------GTAT---T---AGTACTGCTTGATACTTACA-------TGTAGTAATTATATT--GTTTTTCACAGGCTAAAACATTGATTAATCTCCTGCAGACTTCTGATAAATGAACACAGAAGTGGGTGGGGTAATGTGAATANNNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTTCATTGGAACATATTAACTCGAATTTGAGTGTTATTGG----TTTG--TGT-A-AA-AA-ATAGATTTGTTATGCATGTCACGTGAAAACACATCTTTCCTGCTACAAGACCTGTGCACTTTTAGAC--ATAGGATAACAAGct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GCCCTGTCTAGGAATCATAACTTGATTGTTACACAAA