lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222
lowQualScore : 222 1 333 1 111 11 1 4444 22 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6666666666 444444444444 44444444444444444 333 11 1 4444444444444444444 111 00000000000000000000000000000000 1111 111111 999999999999999999999999999999 1
lowQualScore : 44 222 4 6 1 5 222 0 999 88 6 3 5 4444 66 1 6 3 7 1 1 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555555555 4 3 0 333333333333 6 0 9999 44444444444444444 0 666 77 8 6 1 3 5 88 3333333333333333333 1 3 111 0 6 22222222222222222222222222222222 7777 44 777777 777777777777777777777777777777 6 5
lowQualScore : .. ... . . . . ... . ... .. . . . .... .. . . . . . . . ............................................................................................................ .......... . . . ............ . . .... ................. . ... .. . . . . . .. ................... . . ... . . ................................ .... .. ...... .............................. . .
lowQualScore : 00 000 0 0 4 0 555 5 555 00 0 0 0 0000 55 4 7 5 8 0 8 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6666666666 1 8 1 555555555555 2 9 4444 77777777777777777 6 888 88 0 0 0 0 9 00 1111111111111111111 0 3 777 7 7 00000000000000000000000000000000 2222 66 222222 777777777777777777777777777777 0 0
consensus : TACATCAGATCTGAGNAGCGTAGCTTCGAATCGAGCAGNGACNCTACGAGTNGAGGGCNAGTGTAGGAGGGAGTCTNCCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAA---C------AATTTC--------G---AAG-G--TAA--A---------TGTT-T-------TGC-----CGTNCTTCAGCCTCAAT-TTTCAGT--GCA-TTTTNTTTGTCACTTTCATTGATCTACT-ACTGCACATNAGCAAGGTTAGGAAACAAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTT----ATCACGCCGCTCAC--------------GTCATGACACTGTCTCGCCGTTTGAAAGAAAATAA-ACTTAAGCTGTGAAAGTCGATTGTCATTTGAAACCTNAACAGCAGAGCCAGTCGGCGATA--CCCC-------------TCTTATTA---CATATT-TG--G-A--TTTTTTATGTTTTCACT-TTGCTGACGAAT---TGTAC--GCATTG----GCGTACGTGCGTATGCCTGGGTACGCGCCTG------TTTG-TGTACAATACTTAATATACTCTGTTTAAAT
Reference ( gi|2 ) : TACGCCAGATCAGCGTAGTGTAGCTTCGAATGGAGCACTAACACTATACGTTTAAGGTAAATGTAGGCGGGAG--CACCCCG-TCCCGTCGGT-GGGGATTTGGACTCCATCAAGAAA----T------AAT-----------G---AAG-G--TAA--A---------TGTT---------TGC-----CATTTTTCAGCGTAAATGTTTAAGTC-GCA-TTTATTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAGGAAACGGATATAACAATTTTAAATCGTTTTAAAAGTCATAGCTT----ATCACGCCGCTAAC--------------GTCATGACACTGTACAGCCGTTTGAAAGAAACCAA-A-TTAAGCTGTGAAAGTCGATTGTCATTTGAAACCTTAACAGCAGAGCCAGGTGGCGATA--ACCC-------------TTTCATTA---CACATT-TG--G-A--TTT----------------------CGAAG---TGTAC--GCATTG----ACGTACGTGCGTATGCCTGGATACGCGCCTGA----ATTTA-TGTGCAGT--TTGTTATA-TCTATGTAAATACTTTTGAGAACCTTTAATTGTCTGACAGT
gi|15 : TACGCCAGACCTGAGTAGCATTGCTTTGAATCAAGCAGAGACCCTACAAGTTGAGGGCAAATGTAGGAGGGAGTCTGCCCC--TCCTGCTGGTGGGGGGTTTGGACTCAATCAAGAAC----TTTTAGAAAT-----------G---AAG-G--
gi|7 : ggtagagaacttgggcatacctgaacaaatttgaactgTACATCAGATCTGAGAAGCGAAGCTTCGAATCGAGCA
gi|6 : agccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgTACATCAGATCTGAGAAGCGAAGCTTCGAATCGAGCAgcgaatctcccgctcccgtcagtgggggttaggcttccaccaaaacaatttcgaaaaatttaatgttgcgttctcgagcttcatttcagtttctttgtcactttcattgatctactgactgcatataagcaaggtaaggaatcttaaaa
gi|5 : aagccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgTACATCAGATCTGAGTAGCGTAGCTTCGAATCGAGCAgcgaatctcccgctcccgtcagtgggggttaggcttccaccaaaacaatttcgaaaaatttaatgttgcgttctcgagcttcatttcagtttctttgtcactttcattgatctactgactgcatataagcaaggtaaggaatcttaaaa
gi|13 : agctatttgaagtgaacacaatataatacaaatctaatcgttgtgaaaaagacgtttgaactggagttttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttacctgTAGCTTC-AATCAGGCAGCGACGCTACGAGTGGAGGGTCAGTGTAGGAGGGAG--TCTTCCGATCCCGTCTGT-GGGGGTTTAGCCTCCAACAAGAAA----gcgaatctcccactctcgtcgatgggggtttggcttccaccaaaaaaacaatttcgaaatatagaaagcaaaatttaatgttgcgttctcgttcttcatttcagtctctttgtcactttcattgatctactaactgcatataagcaaggttatgaatcttaaaaa
gi|7 : tatacaggggcgtactttaactgctcgccaCCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACCA--AAA----C------AATTTC--------G---AAA-AATTTA--A---------TG-T---------TG------CGTTCTCGAGCTTCA---TTTCAGT------TT--CTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAGGAAacttggggaaaaaagatgacaaatgttgtgtttcctgctttatctcggcactaatgtggcgtttttgctgta
gi|6 : agccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgtacatcagatctgagaagcgaagcttcgaatcgagcagcgaatctCCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACCA--AAA----C------AATTTC--------G---AAA-AATTTA--A---------TG-T---------TG------CGTTCTCGAGCTTCA---TTTCAGT------TT--CTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAGGAAtcttaaaa
gi|5 : aagccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgtacatcagatctgagaagcgaagcttcgaatcgagcagcgaatct-TCTCGTCGAT-GGGGGTTTGGCTTCCACCAAAAAAA---C------AATTTCGAAATATAG---AAA-G--CAA--AATTTAA---TGTT----------GCGTTCTCGTTCTTCA---------TTTCAGTC-TC-------TTTGTCACTTTCATTGATCTACTAACTGCATATAAGCAAGGTTATGAAtcttaaaa
gi|1 : agctatttgaagtgaacacaatataatacaaatctaatcgttgtgaaaaagacgtttgaactggagttttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttacctgtacatcagatctgagtagcgtagcttcgaatcgagcagcgaatctcccac-GGGGACT----CTCAACCAAGAAAA---T------ATT-----------GGAAAAGAG--TAG--ACAACTGATGTGTTCTTA-----TGC-----TATATTTCAGCCTCAATCCT-------GCA-TTTTGATTGTAATGTTTAT----------ACTGCACATTAGCGATGTTCGGAAAC------AAAAA----AAAACGTTTTAAAA-TCATAGCTT----GTCACGCCGtcttaaaaa
gi|3 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatatgagcagcgatgctgcaagtgggagagtaagtataggacTCCGTTAAGAAAATACTGAA---AATTA---------G---AAG-GCATAATTA---------TGTTGTGCTCTCATGC-----CAAATTTCAGAGTTAATGT----G---GCAATTTGTTT-GTCACTTTTAT----------ACTACATATTAGCAAGGTTAGGAAACAAAAATATCATTTTTTATTCATTTTAA--GTCATAGCTT----ATCATGCTGGTCGC--------------ATCATAGCACTGTCTCACCTTTTGAAAGAAAATAA-A-CTAA------ATA--CAATTGTCATATGAATCCATAAattcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgttttttttttacatattttgaatttttatgttttcacattgtgctgacgaattgtacgcattggcgtacgtgcgtattcctggatacgcgcttgacattatttactgt
gi|8 : ctTTAAGAAA----T------TA------------G---GAG-A--CAA--AAG-------TGTTCTA------TGT-----TATAGTTCAGC-----TGTC---ATCTGCA-TTTTGTTTGTCACTTTAAT----------ACTGCACATTAGCAAAGTTAGGAAACAAAAATAACGATTTTAAATCGTTTTAAAAAGTATAGCTT----GTCCCACCGCTCAC--------------atgcactcctgatcaggaaggctgtggaagtcaattgtcatttggaacctaaacagcagagtaaggtggtgataccactctctttctttctgtttttactacatatttggaattttttatgtttccacttttgctgacgaattgtacacactggcatacgtgcgtatgcctgtataggcacctgttttcaatacttaatatactctgtttaaat
gi|4 : ggctcttcagtaaaaacat---------TGC-----TACATTTCAGCCTCAATCTT-------GCA-TTTTGTTCATCACTTTTAT----------ACTGAACATGAGCAATGTTAGGAAACAAAAATAACGATTTTAAATCGATTTAAAAAGCAAAGCTT----GTCACGCTGactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgatatgcatatttggaatttttgttttatgatgaattgtgggcattagcg
gi|16 : aagtaaaagacagataatgtgcttccaTT-GCA-TGT-TCTTGTCACTTTTAT----------ACTGCACATTAGCAATATTAGAAAA-----ACAATAGTCTCGA--TGTCTTACGGGTC--AG-TT----ACCACaccgacaagagtatcgatgtctaataggtaaattaccactgatatatattttttgtttttacattttgctgactaattgtaacgtggcgcattcgcgtacatgcattcgcgtacatgcgtttgctggatacacgtctgcttgtatataattttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|9 : ttcggaaattagaaaacaaatgatgttttctaatggtatatttcagccataatcAAGGTAAGGAAACGA----------TTTAAATCGTTTTTAGAATCATAGTTT----ATCACGCCGCTCAC--------------ACCATGACACCGTCTCGCCGTTTGAAAAAAATAAACA-TAAAACTtgatatattcagaagaaattag
gi|11 : AAACTATTTTTAAAATCATAGTTT----ACCACGCCGCTCAA--------------GTCATGACCCTGTCTTGCCGTTTGAAAGAAAATAA-ACTTAAtccataatcaacatgaatccattatgcagcatttatgctcatgatacctctgaaaatcgattgtcatttgaaacctaaacagtagagccaggcgccaatacccctcttattacatatttgcaagttttatatgttttacttttgctgaagaattgtactcattggcgtacgtgcgtaagcctgggtacacg
gi|10 : gttaggaAAACTATTTTTAAAATCATAGTTT----ACCACGCCGCTCAA--------------GTCATGACCCTGTCTTGCCGTTTGAAAGAAAATAA-ACTTAAaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttc
gi|14 : ttaggaAAATTGTTTTAAAAATCATAACATAACAAACACGCTGCTAATGCTGTCCTACACGAGTCAAGACAATGTCTCTCTATTAGAAAGAAAACAA-A-CTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttct
gi|3 : aaAGGCTGTGGAAGTCAATTGTCATTTGGAACCTAAACAGCAGAGTAAGGTGGTGATACCACTCTCTTTCTTTCTGTTTTTACTA---CATATT-TG--GAA--TTTTTTATGTTTCCACTTTTGCTGACGAAT---TGTAC--ACACTG----GCATACGTGCGTATGCCTGTATAGGCACCTG------TTT--T---CAATACTTAATATACTCTGTTTAAATgtaatattccatatatatccagaatacattcatgctcatgatattgttaattcaattgtcatttaaaccttaaaga
gi|11 : cttccgttaagaaaatactgaaaattagaaggcataattatgttgtgctctcatgccaaatttcagagttaatgtggcaatttgtttgtcacttttatactacatattagcaaggttaggaaacaaaaatatcattttttattcattttaagtcatagcttatcatgctggtcgcatcatagcactgtctcaccttttgaaagaaaataaactaaatacaattgtcatatgaatccataaatgcactcctgatcaggaAGCTGTGAAAGTCGATTGTCATTTGAAATCTAAACAGCAGAACCAGTCGGCGATA--TTCT-------------TCTTATTA---CATATT-TT--G-A--TTTTTTATGTTTTCACTGTTGCTGACGAAT---TATAC--GCATTGGCATACGTACGTACGTATGCCTGGGT
gi|10 : gttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtAGCTGTGAAAGTCGATTGTCATTTGAAATCTAAACAGCAGAACCAGTCGGCGATA--TTCT-------------TCTTATTA---CATATT-TT--G-A--TTTTTTATGTTTTCACTGTTGCTGACGAAT---TATAC--GCATTGGCATACGTACGTACGTATGCCTGGGTtc
gi|17 : ttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtGCTGTGGAAGTTAAGTGTCATTTGAAAATCTAAAAGCAGAGCCATTCGGCTATG--CCCC-------------TCTCATtct
gi|9 : tataattctaaaatgaatccatgcccatggtgCTCTGAAAATCGATTGTCATTTGAAACCTAAACAGTAGAGCCAGGCGCCAATA--CCCC-------------TCTTATTA---CATATT-TG--C-AAGTTTTATATGTTTTACTTTTGC----TGAAGAATTGTAC--TCATTG----GCGTACGTGCGTAAGCCTGGGTACACGc
gi|14 : aaggtaaggaaacgatttaaatcgtttttagaatcatagtttatcacgccgctcacaccatgacaccgtctcgccgtttgaaaaaaataaacataaaacttccataatcaacatgaatccattatgcagcatttatgctcatgatacAATTCAATTGTCATTT-AAACCTTAA
gi|12 : aaaaattgttttaaaaatcataacataacaaacacgctgctaatgctgtcctacacgagtcaagacaatgtctctctattagaaagaaaacaaactgtaatattccatatatatccagaatacattcatgctcatgatattgttCC-------------TTTTATGATTTCAC-TT-TG--G-C--TTA----------------------CGAAT---TGTAC--CCATT------TGTACGTGCGCGTTCCTGGATACGCGCCTGaga
gi|1 : gggcgtacctggacgcgtttggactgttcatcagttatgaacagcggcgctgcgagtggggcgtgggtaaggttttcaggggtcaaaatagaacatttgggaaattggaagaaaaatgatgcgttattataggtgtagttataattcagTTT---CACATTGTGCTG-A---------------------------CGAAT---TGTAC--GCATTG----GCGTACGTGCGTATTCCTGGATACGCGCTTGACATTATTTACTGTccagatggttattcatgttcaatatatccaaac
gi|22 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatatgagcagcgatgctgcaagtgggagagtaagtataggacggggactctcaaccaagaaaatattggaaaagagtagacaactgatgtgttcttatgctatatttcagcctcaatcctgcattttgattgtaatgtttatactgcacattagcgatgttcggaaacaaaaaaaaacgttttaaaatcatagcttgtcacgccgattcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgttttttttttacatattttgaatttttatgt----------------------CGAAT---TGTGC--GCATTG----GCGTATGTGCGTATGTC
gi|20 : agactgaAAT---TGTAC--GCATTG----GTGTACGTGCGTATGCCTGGGTACTCAGCTG
gi|4 : acG---CGTACATGCATTC----GCGTACATGCGTTTGC-TGGATACACGTCTG------CTTG-TATATAAT--TTtctatt
gi|21 : aagtaaaagacagataatgtgcttccatgctacatttcagcctcaatcttgcattttgttcatcacttttatactgaacatgagcaatgttaggaaacaaaaataacgattttaaatcgatttaaaaagcaaagcttgtcacgctgaccgacaagagtatcgatgtctaataggtaaattaccactgatatatattttttgtttttacattttgctgactaattgtaacgtggcgcattcGTAC--ACATTG----TCGTACGTGC-TATGCCTGGGTACGCGCCTGtctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|11 : --GCAT------ACGTACGTACGTATGCCtcta
gi|10 : gttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcatt--GCAT------ACGTACGTACGTATGCCctgggttc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTTACCACTGTCAACATCAGATCTGAGTACTTCTATAGAGCAACGACCCACAATCTCCTGCAGACGCTCGTCGGTGTTGTCGGCTCCCA
Unaligned ( gi|19 ): CAGCACTGTCTACACTTCACCTTTTGAAAGAACAGTAAAATTTAAATACACTTGTCATGTGAACAGGGCCCTAATTCACTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777777777777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9999999999 222222222222 333333333333333 11 11111111 1111 11111111 11111 11 1
lowQualScore : 1 1 555555555555555555555555555555555555555555555555555555 444 1 5 5 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 1 2222222222 1 4 66 0 888888 0 9999 999999999999 99 6 5 5 1 3 111111111111111 66 5 11 0 3 55555555 4 999999 4444 33333333 99999 77 66666 88 4 5 3
lowQualScore : . . ...................................................... ... . . . . . .................................................................................................. . . . .......... . . .. . ...... . .... ............ .. . . . . . ............... .. . .. . . ........ . ...... .... ........ ..... .. ..... .. . . .
lowQualScore : 0 9 555555555555555555555555555555555555555555555555555555 444 7 7 4 9 9 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 0 7 0000000000 0 0 99 4 444444 8 4444 333333333333 22 7 7 7 0 0 222222222222222 99 6 99 8 9 88888888 0 666666 2222 22222222 11111 99 55555 00 0 0 0
consensus : TACGTCAGATCTGAGTAGCGTAGCTTCGAAT--GAGCAGCGAC-CTACGAGTCG-AGGGCAAGTGTAGGAGNGAGTCT--CCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNGAAG--------G--TA-A-A---------TGTT---T---T-----GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG--TTTATGTGCAATACTTGNTATACTCTGTNTAAAT
Reference ( family-583 ) : TACATCAGATCTGAGNAGCGTAGCTTCGAAT-CGAGCAGNGACNCTACGAGTNG-AGGGCNAGTGTAGGAGGGAGTCTNCCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTCGAAG--------G--TA-A-A---------TGTT---T---T-----GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTCATTGATCTACT-ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TNAACAGCAGAGCCAGTCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG--TTTGTGTACAATACTTAATATACTCTGTTTAAAT
gi|1 : CGAATATGAGCAGCGATGCTGCAAGTGGGAGAGTAAGTATAGGA------------------------C-GGGGACT----CTCAACCAAGAAAATA-------TTGGAAAAGA-----G--TA-G-ACAACTGATGTGTT---C---TTAT--GCTATATT-TCA-GCC-TCAAT-CCT-------------G-CATTTTGATTGTAATGTTTAT----------ACTGCACATTAGCGATGTTCG-GAAAC--AAAAA----------AAAACGTTTTAAAA-TCATAGCTTGTCA----CGCCG
gi|1 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgcTTT---------------TTTTAC--ATATTTTGA--ATTTTTATGTTTTCACAT-TGT-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATTC-----CTGGATACGCGCTTG--attcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgttttttttttacatattttgaatttttatgttttcacattgtgctgacgaattgtacgcattggcgtacgtgcgtattcctggatacgcgcttgacattatttactgt
gi|10 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatatgagcagcgatgctgcaagtgggagagtaagtataggacggggactctcaaccaagaaaatattggaaaagagtagacaactgatgtgttcttatgctatatttcagcctcaatcctgcattttgattgtaatgtttatactgcacattagcgatgttcggaaacaaaaaaaaacgttttaaaatcatagcttgtcacgccgattcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgtttAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAacattatttactgt
gi|10 : ttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGT-T-G-CTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttct
gi|11 : ttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAtct
gi|11 : gttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGT-T-G-CTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttc
gi|12 : gttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtTTTTATGATTTCAC-T-T-T-GGCTTACGAATTGTA------CCCATT------TGTACGTGCGC--------GTTC-----CTGGATACGCGCCTG--tc
gi|13 : gggcgtacctggacgcgtttggactgttcatcagttatgaacagcggcgctgcgagtggggcgtgggtaaggttttcaggggtcaaaatagaacatttgggaaattggaagaaaaatgatgcgttattataggtgtagttataattcagccCATAGCTTC-AAT-CAGGCAGCGACGCTACGAGTGG-AGGGTCAGTGTAGGAGGGAGTCTT--CCGATCCCGTCTGT-GGGGGTTTAGCCTCCAACAAGAAAACccagatggttattcatgttcaatatatccaaac
gi|14 : tatacaggggcgtactttaactgctcgcAAATTGTTTTAAAAATCATAACATAACAAACACGCTGCTAATGCTGTCCTACACGAGTCAAGACAATGTCTCTCTATTAGAAAGAAAACAAACTGTAAttggggaaaaaagatgacaaatgttgtgtttcctgctttatctcggcactaatgtggcgtttttgctgta
gi|15 : aaTACGCCAGACCTGAGTAGCATTGCTTTGAAT-CAAGCAGAGACCCTACAAGTTG-AGGGCAAATGTAGGAGGGAGTCTGCCC--CTCCTGCTGGTGGGGGGTTTGGACTCAATCAAGAAtattccatatatatccagaatacattcatgctcatgatattgttaattcaattgtcatttaaaccttaaaga
gi|16 : ggtagagaacttgggcatacctgaacaaatttgaactgAGAAAACAAA-----T--------------------G-A---------TGTT---T---TCTAATGGTATATT-TCA-GCC-ATAAT-CTT-------------G-CATGTTCTT-GTCACTTTTAT----------ACTGCACATTAGCAATATTAGAAAAAC--AATAGTCTCGATcttttagaaatgaagg
gi|17 : ttcggaaattGCTGTGGAAGTTAAGTGTCATTTGAAAATC-TAAA-AGCAGAGCCATTCGGCTATGCCCCTCT---------------CATgtcttacgggtcagttaccactgatatattcagaagaaattag
gi|18 : tataattctaaaatgaatccatgcccatggtgACATCAGATCTGAGTA------CTTCT-AT-AGAGCAACGACCCc
gi|2 : tttaccactgtcaTACGCCAGATCAGCGTAGTGTAGCTTCGAAT-GGAGCACTAACACTATACGTTT-AAGGTAAATGTAGGCGGGAGC--ACCCCG-TCCCGTCGGT-GGGGATTTGGACTCCATCAAGAAA-TAAT--------GAAG--------G--TA-A-A---------TGTT---T---------GCCATTTT-TCA-GCG-TAAATGTTTAAG--------TCG-CATTTATTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--GGATATAACAATTTTAAATCGTTTTAAAAGTCATAGCTTATCA----CGCCGCT------------AACG--TCATGACACTGTACAGCCGTTTGAAAGAAACCAAA-T-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TTAACAGCAGAGCCAGGTGGCGATAACCCTTT---------------CATTAC--ACATTTGGA--TTT--------------------------CGAAGTGTA------CGCATTGA----CGTACGTGCGT--------ATGC-----CTGGATACGCGCCTGAATTTATGTGCAGT--TTGTTATA-TCTATGTAAATacaatctcctgcagacgctcgtcggtgttgtcggctccca
gi|20 : AATTGTA------CGCATTGG----TGTACGTGCGT--------ATGC-----CTGGGTACTCAGCTG--TCTATacttttgagaacctttaattgtctgacagt
gi|21 : acGTA------CACATTGT----CGTACGTGC-T--------ATGC-----CTGGGTACGCGCCTG--TCTt
gi|22 : -CTGACGAATTGTG------CGCATTGG----CGTATGTGCGT--------ATGT-----Ca
gi|3 : agaCTTCCGTTAAGAAAATACTGAAAATTAGAAG--------G--CATA-A---------T--T---A---T-----GTTGTGCTCTCATGCC---AAA-TTTCAGAGTTAATGT-GGCAATTTGTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--AAAAATATCATTTTTTATTCATTTTAAG--TCATAGCTTATCA----TGCTGGT------------CGCA--TCATAGCACTGTCTCACCTTTTGAAAGAAAATAAACT----------AAATACAATTGTCATATG-AATCCATAAA
gi|3 : AGGCTGTGGAAGTCAATTGTCATTTG-GAACC-TAAACAGCAGAGTAAGGTGGTGATACCACTCTCTTTCTTTCTGTTTTTACTAC--ATATTTGGAA-TTTTTTATGTTTCCAC-T-T-TTG-CTGACGAATTGTA------CACACTGG----CATACGTGCGT--------ATGC-----CTGTATAGGCACCTG--TTT-T---CAATACTTAATATACTCTGTTTAAATtgcactcctgatcaggaaggctgtggaagtcaattgtcatttggaacctaaacagcagagtaaggtggtgataccactctctttctttctgtttttactacatatttggaattttttatgtttccacttttgctgacgaattgtacacactggcatacgtgcgtatgcctgtataggcacctgttttcaatacttaatatactctgtttaaat
gi|4 : cttccgttaagaaaatactgaaaattagaaggcataattatgttgtgctctcatgccaaatttcagagttaatgtggcaatttgtttgtcacttttatactacatattagcaaggttaggaaacaaaaatatcattttttattcattttaagtcatagcttatcatgctggtcgcatcatagcactgtctcaccttttgaaagaaaataaactaaatacaattgtcatatgaatccataaatgcactcctgatcaggaAG--------A--TA-ATG---------TGCT---TCCAT-----GCTACATT-TCA-GCC-TCAAT-CTT-------------G-CATTTTGTTCATCACTTTTAT----------ACTGAACATGAGCAATGTTAG-GAAAC--AAAAATAACGATTTTAAATCGATTTAAAAAGCAAAGCTTGTCA----CGCTG
gi|4 : aagtaaaagacT---------------TACCACTGATATAT--A--TTTTTTGTTTTTACAT-T-T-T-G-CTGACTAATTGTAACGTGGCGCATTCG----CGTACATGCATTCGCGTACATGCGTTTGCTGGATACACGTCTG--CTTGTATATAATaccgacaagagtatcgatgtctaataggtaaattaccactgatatatattttttgtttttacattttgctgactaattgtaacgtggcgcattcgcgtacatgcattcgcgtacatgcgtttgctggatacacgtctgcttgtatataattttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|5 : aagtaaaagacagataatgtgcttccatgctacatttcagcctcaatcttgcattttgttcatcacttttatactgaacatgagcaatgttaggaaacaaaaataacgattttaaatcgatttaaaaagcaaagcttgtcacgctgaccgacaagagtatcgatgtctaataggtaaaTACATCAGATCTGAGTAGCGTAGCTT---------------------CGAATCG-AG--C---------AGCGAATCT--CCCACTCTCGTCGAT-GGGGGTTTGGCTTCCACCAAAAAAACAAT-----TTCGAAATATAGAAAG--CA-A-AATTTAA---TGTTGCGT---T-----CTCGTTCT-TCA-----------TTTCAG--------T-------CTCTTTGTCACTTTCATTGATCTACTAACTGCATATAAGCAAGGTTAT-GAATCTTAAAAAtttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|6 : agctatttgaagtgaacacaatataatacaaatctaatcgttgtgaaaaagacgtttgaactggagttttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttacctgTACATCAGATCTGAGAAGCGAAGCTT---------------------CGAATCG-AG--C---------AGCGAATCT--CCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACC---AAAACAAT-----TTCGAAA--------AATTT-A-A---------TG-----T---T-----G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAA
gi|7 : aagccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgTACATCAGATCTGAGAAGCGAAGCTT---------------------CGAATCG-AG--C---------AGCGAATCT--CCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACC---AAAACAAT-----TTCGAAA--------AATTT-A-A---------TG-----T---T-----G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAAtcttaaaa
gi|8 : agccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgAAGAAA----------TTAGGAG--------A--CA-A-AAG-------TGTT---C---TAT---GTTATAGT-TCA-GCTGTCA-----TC----------T-G-CATTTTGTTTGTCACTTTAAT----------ACTGCACATTAGCAAAGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAAGTATAGCTTGTCC----CACCGCT------------CACtcttaaaa
gi|8 : ggctcttcagtaaaaacatttTGC--ATATTTGGA--ATTTTT--GTTTT-A-----------TGATGAATTGTG------GGCATTAG----CGactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgatatgcatatttggaatttttgttttatgatgaattgtgggcattagcg
gi|9 : ggctcttcagtaaaaacatttaagaaattaggagacaaaagtgttctatgttatagttcagctgtcatctgcattttgtttgtcactttaatactgcacattagcaaagttaggaaacaaaaataacgattttaaatcgttttaaaaagtatagcttgtcccaccgctcacactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgataAAGGTAAG-GAAAC--GA----------TTTAAATCGTTTTTAGAATCATAGTTTATCA----CGCCGCT------------CACA--CCATGACACCGTCTCGCCGTTTGAAA-AAAATAAACA-TAA
gi|9 : CTCTGAAAATCGATTGTCATTTG-AAACC-TAAACAGTAGAGCCAGGCGCCAATACCCCTCT---------------TATTAC--ATATTTGCAAGTTTTATATGTTTT-ACTT-T-T-G-CTGAAGAATTGTA------CTCATTGG----CGTACGTGCGT--------AAGC-----CTGGGTACACGaacttccataatcaacatgaatccattatgcagcatttatgctcatgatacctctgaaaatcgattgtcatttgaaacctaaacagtagagccaggcgccaatacccctcttattacatatttgcaagttttatatgttttacttttgctgaagaattgtactcattggcgtacgtgcgtaagcctgggtacacg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAGCACTGTCTACACTTCACCTTTTGAAAGAACAGTAAAATTTAAATACACTTGTCATGTGAACAGGGCCCTAATTCACTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5555555555 222222222222 333333333333333 11 11111111 1111 11111111 33333333333 111 1
lowQualScore : 0 1 33333333333333333333333333333333333333333333333 0 4 1 5 5 1 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 8888888888 1 4 66 0 888888 5 9999 999999999999 99 6 5 5 1 111111111111111 66 5 11 0 3 55555555 4 999999 4444 33333333 99999 55555555555 1 000 99 1 5 1
lowQualScore : . . ............................................... . . . . . . . ........................................................................................................... . . .......... . . .. . ...... . .... ............ .. . . . . ............... .. . .. . . ........ . ...... .... ........ ..... ........... . ... .. . . .
lowQualScore : 7 9 44444444444444444444444444444444444444444444444 4 3 7 7 4 9 9 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 9 0 3333333333 0 0 99 4 444444 1 4444 333333333333 22 7 7 7 0 222222222222222 99 6 99 8 9 88888888 0 666666 2222 22222222 11111 00000000000 7 000 88 0 0 0
consensus : TACGTCAGATCTGAGTAGCGTAGCTTCGAAT-G-AG-CAGCGAC-C-TACAAGTCG-AGGGCAAGTGTAGGAGNGAGTCTCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNG------AAG--------G--T---A-A-A---------TGTT---T-----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
Reference ( family-583 ) : TACGTCAGATCTGAGTAGCGTAGCTTCGAAT-G-AG-CAGCGAC-C-TACGAGTCG-AGGGCAAGTGTAGGAGNGAGTCTCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNG------AAG--------G--T---A-A-A---------TGTT---T-----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTGCAATACTTGNTATACTCTGTNTAAAT
gi|1 : AT-G-AG-CAGCGATGC-TGCAAGTGGGAGAGTAAGTATAGGA----------------------C-GGGGACT----CTCAACCAAGAAAATA-------TTGG------AAAAGA-----G--T---A-G-ACAACTGATGTGTT---C-----TTATGCTATATT-TCA-GCC-TCAAT-CCT-------------G-CATTTTGATTGTAATGTTTAT----------ACTGCACATTAGCGATGTTCG-GAAAC--AAAAA----------AAAACGTTTTAAAA-TCATAGCTTGTCA----CGCCG
gi|1 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatTTT---------------TTTTAC--ATATTTTGA--ATTTTTATGTTTTCACAT-TGT-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATTC-----CTGGATACGCGCTTG-----------attcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgttttttttttacatattttgaatttttatgttttcacattgtgctgacgaattgtacgcattggcgtacgtgcgtattcctggatacgcgcttgacattatttactgt
gi|10 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatatgagcagcgatgctgcaagtgggagagtaagtataggacggggactctcaaccaagaaaatattggaaaagagtagacaactgatgtgttcttatgctatatttcagcctcaatcctgcattttgattgtaatgtttatactgcacattagcgatgttcggaaacaaaaaaaaacgttttaaaatcatagcttgtcacgccgattcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgtttAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAacattatttactgt
gi|10 : ttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGT-T-G-CTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttct
gi|11 : ttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAtct
gi|11 : gttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGT-T-G-CTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttc
gi|12 : gttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtTTTTATGATTTCAC-T-T-T-GGCTTACGAATTGTA------CCCATT------TGTACGTGCGC--------GTTC-----CTGGATACGCGCCTGCCAGATGGTTATTCATGTTCAATAtc
gi|13 : gggcgtacctggacgcgtttggactgttcatcagttatgaacagcggcgctgcgagtggggcgtgggtaaggttttcaggggtcaaaatagaacatttgggaaattggaagaaaaatgatgcgttattataggtgtagttataattcagccCATAGCTTC-AAT-C-AGGCAGCGACGC-TACGAGTGG-AGGGTCAGTGTAGGAGGGAGTCTTCCGATCCCGTCTGT-GGGGGTTTAGCCTCCAACAAGAAAAC--------TTGGGGAAAAAAG--------A--TGACA-A-A---------TGTT---G-----T---Gtatccaaac
gi|14 : tatacaggggcgtactttaactgctcgcAAATTGTTTTAAAAATCATAACATAACAAACACGCTGCTAATGCTGTCCTACACGAGTCAAGACAATGTCTCTCTATTAGAAAGAAAACAAACTGTAAtttcctgctttatctcggcactaatgtggcgtttttgctgta
gi|15 : aaTACGCCAGACCTGAGTAGCATTGCTTTGAATCA-AG-CAGAGAC-CCTACAAGTTG-AGGGCAAATGTAGGAGGGAGTCTGCCCCTCCTGCTGGTGGGGGGTTTGGACTCAATCAAGAAtattccatatatatccagaatacattcatgctcatgatattgttaattcaattgtcatttaaaccttaaaga
gi|16 : ggtagagaacttgggcatacctgaacaaatttgaactgAGAAAACAAA-----T-----------------------------G-A---------TGTT---TTCTAAT---GGTATATT-TCA-GCC-ATAAT-CT------------T-G-CATGTTC-TTGTCACTTTTAT----------ACTGCACATTAGCAATATTAGAAAAAC--AATAGTCTCGATcttttagaaatgaagg
gi|17 : ttcggaaattGCTGTGGAAGTTAAGTGTCATTTGAAAATC-TAAA-AGCAGAGCCATTCGGCTATGCCCCTCT---------------CATgtcttacgggtcagttaccactgatatattcagaagaaattag
gi|18 : tataattctaaaatgaatccatgcccatggtgACATCAGATCTGAGTA------CTTCTATA-G-AG-CAACGAC-C-CACAAc
gi|2 : tttaccactgtcaTACGCCAGATCAGCGTAGTGTAGCTTCGAAT-GGAG-CACTAACAC-TATACGTTT-AAGGTAAATGTAGGCGGGAGCACCCCG-TCCCGTCGGT-GGGGATTTGGACTCCATCAAGAAA-TAAT--------G------AAG--------G--T---A-A-A---------TGTT---T---------GCCATTTT-TCA-GCG-TAAATGTTTAAG--------TCG-CATTTATTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--GGATATAACAATTTTAAATCGTTTTAAAAGTCATAGCTTATCA----CGCCGCT------------AACG--TCATGACACTGTACAGCCGTTTGAAAGAAACCAAA-T-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TTAACAGCAGAGCCAGGTGGCGATAACCCTTT---------------CATTAC--ACATTTGGA--TTT--------------------------CGAAGTGTA------CGCATTGA----CGTACGTGCGT--------ATGC-----CTGGATACGCGCCTGAA---------TTTATGTGCAGT--TTGTTATA-TCTATGTAAATtctcctgcagacgctcgtcggtgttgtcggctccca
gi|20 : AATTGTA------CGCATTGG----TGTACGTGCGT--------ATGC-----CTGGGTACTCAGCTG-----------TCTATacttttgagaacctttaattgtctgacagt
gi|21 : acGTA------CACATTGT----CGTACGTGC-T--------ATGC-----CTGGGTACGCGCCTG-----------TCTAt
gi|22 : -CTGACGAATTGTG------CGCATTGG----CGTATGTGCGT--------ATGT-----C
gi|3 : agaCTTCCGTTAAGAAAATACTGAAAATTAG------AAG--------G--C---ATA-A---------T--T---A-----T---GTTGTGCTCTCATGCC---AAA-TTTCAGAGTTAATGT-GGCAATTTGTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--AAAAATATCATTTTTTATTCATTTT--AAGTCATAGCTTATCA----TGCTGGT------------CGCA--TCATAGCACTGTCTCACCTTTTGAAAGAAAATAAACT----------AAATACAATTGTCATATG-AATCCATAAA
gi|3 : AGGCTGTGGAAGTCAATTGTCATTTG-GAACC-TAAACAGCAGAGTAAGGTGGTGATACCACTCTCTTTCTTTCTGTTTTTACTAC--ATATTTGGAA-TTTTTTATGTTTCCAC-T-T-TTG-CTGACGAATTGTA------CACACTGG----CATACGTGCGT--------ATGC-----CTGTATAGGCACCTG-----------TTT-T---CAATACTTAATATACTCTGTTTAAATtgcactcctgatcaggaaggctgtggaagtcaattgtcatttggaacctaaacagcagagtaaggtggtgataccactctctttctttctgtttttactacatatttggaattttttatgtttccacttttgctgacgaattgtacacactggcatacgtgcgtatgcctgtataggcacctgttttcaatacttaatatactctgtttaaat
gi|4 : cttccgttaagaaaatactgaaaattagaaggcataattatgttgtgctctcatgccaaatttcagagttaatgtggcaatttgtttgtcacttttatactacatattagcaaggttaggaaacaaaaatatcattttttattcattttaagtcatagcttatcatgctggtcgcatcatagcactgtctcaccttttgaaagaaaataaactaaatacaattgtcatatgaatccataaatgcactcctgatcaggaAG--------A--T---A-ATG---------TGCT---TCCA--T---GCTACATT-TCA-GCC-TCAAT-CTT-------------G-CATTTTGTTCATCACTTTTAT----------ACTGAACATGAGCAATGTTAG-GAAAC--AAAAATAACGATTTTAAATCGATTTAAAAAGCAAAGCTTGTCA----CGCTG
gi|4 : aagtaaaagacT---------------TACCACTGATATAT--A--TTTTTTGTTTTTACAT-T-T-T-G-CTGACTAATTGTAACGTGGCGCATTCG----CGTACATGCATTCGCGTACATGCGTTTGCTGGATACACGTCTG-----------CTTGTATATAATaccgacaagagtatcgatgtctaataggtaaattaccactgatatatattttttgtttttacattttgctgactaattgtaacgtggcgcattcgcgtacatgcattcgcgtacatgcgtttgctggatacacgtctgcttgtatataattttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|5 : aagtaaaagacagataatgtgcttccatgctacatttcagcctcaatcttgcattttgttcatcacttttatactgaacatgagcaatgttaggaaacaaaaataacgattttaaatcgatttaaaaagcaaagcttgtcacgctgaccgacaagagtatcgatgtctaataggtaaaTACATCAGATCTGAGTAGCGTAGCTTCG-----------------------AATCG-AG--CA---------GCGAATCTCCCACTCTCGTCGAT-GGGGGTTTGGCTTCCACCAAAAAAACAAT-----TTCG------AAATATAGAAAG--C---A-A-AATTTAA---TGTTGCGT-----T---CTCGTTCT-TCA-----------TTTCAG--------T-------CTCTTTGTCACTTTCATTGATCTACTAACTGCATATAAGCAAGGTTAT-GAATCTTAAAAAtttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|6 : agctatttgaagtgaacacaatataatacaaatctaatcgttgtgaaaaagacgtttgaactggagttttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttacctgTACATCAGATCTGAGAAGCGAAGCTTCG-----------------------AATCG-AG--CA---------GCGAATCTCCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACC---AAAACAAT-----TTCG------AAA--------AATT---T-A-A---------TG-----T-----T---G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAA
gi|7 : aagccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgTACATCAGATCTGAGAAGCGAAGCTTCG-----------------------AATCG-AG--CA---------GCGAATCTCCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACC---AAAACAAT-----TTCG------AAA--------AATT---T-A-A---------TG-----T-----T---G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAAtcttaaaa
gi|8 : agccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgAAGAAA----------TTAG------GAG--------A--C---A-A-AAG-------TGTT---C-----TAT-GTTATAGT-TCA-GCTGTCA-----TC----------T-G-CATTTTGTTTGTCACTTTAAT----------ACTGCACATTAGCAAAGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAAGTATAGCTTGTCC----CACCGCT------------CACtcttaaaa
gi|8 : ggctcttcagtaaaaacatttTGC--ATATTTGGA--ATTTTT--GTTTT-A-----------TGATGAATTGTG------GGCATTAG----CGactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgatatgcatatttggaatttttgttttatgatgaattgtgggcattagcg
gi|9 : ggctcttcagtaaaaacatttaagaaattaggagacaaaagtgttctatgttatagttcagctgtcatctgcattttgtttgtcactttaatactgcacattagcaaagttaggaaacaaaaataacgattttaaatcgttttaaaaagtatagcttgtcccaccgctcacactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgataAAGGTAAG-GAAAC--GA----------TTTAAATCGTTTTTAGAATCATAGTTTATCA----CGCCGCT------------CACA--CCATGACACCGTCTCGCCGTTTGAAA-AAAATAAACA-TAA
gi|9 : CTCTGAAAATCGATTGTCATTTG-AAACC-TAAACAGTAGAGCCAGGCGCCAATACCCCTCT---------------TATTAC--ATATTTGCAAGTTTTATATGTTTT-ACTT-T-T-G-CTGAAGAATTGTA------CTCATTGG----CGTACGTGCGT--------AAGC-----CTGGGTACACGaacttccataatcaacatgaatccattatgcagcatttatgctcatgatacctctgaaaatcgattgtcatttgaaacctaaacagtagagccaggcgccaatacccctcttattacatatttgcaagttttatatgttttacttttgctgaagaattgtactcattggcgtacgtgcgtaagcctgggtacacg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAGCACTGTCTACACTTCACCTTTTGAAAGAACAGTAAAATTTAAATACACTTGTCATGTGAACAGGGCCCTAATTCACTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777777 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5555555555 222222222222 333333333333333 11 11111111 1111 11111111 33333333333 1
lowQualScore : 0 1 77777777777777777777777777777777777777777777777 0 4 1 5 5 1 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 8888888888 1 4 66 0 888888 5 9999 999999999999 99 6 5 5 1 111111111111111 66 5 11 0 3 55555555 4 999999 4444 33333333 99999 55555555555 1 0 1 99 1 5 1
lowQualScore : . . ............................................... . . . . . . . ........................................................................................................... . . .......... . . .. . ...... . .... ............ .. . . . . ............... .. . .. . . ........ . ...... .... ........ ..... ........... . . . .. . . .
lowQualScore : 7 9 99999999999999999999999999999999999999999999999 4 3 7 7 4 9 9 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 9 0 3333333333 0 0 99 4 444444 1 4444 333333333333 22 7 7 7 0 222222222222222 99 6 99 8 9 88888888 0 666666 2222 22222222 11111 00000000000 7 2 0 88 0 0 0
consensus : TACGTCAGATCTGAGTAGCGTAGCTTCGAAT-G-AG-CAGCGAC-C-TACAAGTCG-AGGGCAAGTGTAGGAGNGAGTCTCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNG------AAG--------G--T---A-A-A---------TGTT---T-----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
Reference ( family-583 ) : TACGTCAGATCTGAGTAGCGTAGCTTCGAAT-G-AG-CAGCGAC-C-TACAAGTCG-AGGGCAAGTGTAGGAGNGAGTCTCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNG------AAG--------G--T---A-A-A---------TGTT---T-----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
gi|1 : AT-G-AG-CAGCGATGC-TGCAAGTGGGAGAGTAAGTATAGGA----------------------C-GGGGACT----CTCAACCAAGAAAATA-------TTGG------AAAAGA-----G--T---A-G-ACAACTGATGTGTT---C-----TTATGCTATATT-TCA-GCC-TCAAT-CCT-------------G-CATTTTGATTGTAATGTTTAT----------ACTGCACATTAGCGATGTTCG-GAAAC--AAAAA----------AAAACGTTTTAAAA-TCATAGCTTGTCA----CGCCG
gi|1 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatTTT---------------TTTTAC--ATATTTTGA--ATTTTTATGTTTTCACAT-TGT-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATTC-----CTGGATACGCGCTTG-----------attcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgttttttttttacatattttgaatttttatgttttcacattgtgctgacgaattgtacgcattggcgtacgtgcgtattcctggatacgcgcttgacattatttactgt
gi|10 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatatgagcagcgatgctgcaagtgggagagtaagtataggacggggactctcaaccaagaaaatattggaaaagagtagacaactgatgtgttcttatgctatatttcagcctcaatcctgcattttgattgtaatgtttatactgcacattagcgatgttcggaaacaaaaaaaaacgttttaaaatcatagcttgtcacgccgattcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgtttAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAacattatttactgt
gi|10 : ttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGT-T-G-CTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttct
gi|11 : ttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAtct
gi|11 : gttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGT-T-G-CTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttc
gi|12 : gttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtTTTTATGATTTCAC-T-T-T-GGCTTACGAATTGTA------CCCATT------TGTACGTGCGC--------GTTC-----CTGGATACGCGCCTGCCAGATGGTTATTCATGTTCAATAtc
gi|13 : gggcgtacctggacgcgtttggactgttcatcagttatgaacagcggcgctgcgagtggggcgtgggtaaggttttcaggggtcaaaatagaacatttgggaaattggaagaaaaatgatgcgttattataggtgtagttataattcagccCATAGCTTC-AAT-C-AGGCAGCGACGC-TACGAGTGG-AGGGTCAGTGTAGGAGGGAGTCTTCCGATCCCGTCTGT-GGGGGTTTAGCCTCCAACAAGAAAAC--------TTGGGGAAAAAAG--------A--TGACA-A-A---------TGTT---G-----T---Gtatccaaac
gi|14 : tatacaggggcgtactttaactgctcgcAAATTGTTTTAAAAATCATAACATAACAAACACGCTGCTAATGCTGTCCTACACGAGTCAAGACAATGTCTCTCTATTAGAAAGAAAACAAACTGTAAtttcctgctttatctcggcactaatgtggcgtttttgctgta
gi|15 : aaTACGCCAGACCTGAGTAGCATTGCTTTGAATCA-AG-CAGAGAC-CCTACAAGTTG-AGGGCAAATGTAGGAGGGAGTCTGCCCCTCCTGCTGGTGGGGGGTTTGGACTCAATCAAGAAtattccatatatatccagaatacattcatgctcatgatattgttaattcaattgtcatttaaaccttaaaga
gi|16 : ggtagagaacttgggcatacctgaacaaatttgaactgAGAAAACAAA-----T-----------------------------G-A---------TGTT---TTCTAAT---GGTATATT-TCA-GCC-ATAAT-CT------------T-G-CATGTTC-TTGTCACTTTTAT----------ACTGCACATTAGCAATATTAGAAAAAC--AATAGTCTCGATcttttagaaatgaagg
gi|17 : ttcggaaattGCTGTGGAAGTTAAGTGTCATTTGAAAATC-TAAA-AGCAGAGCCATTCGGCTATGCCCCTCT---------------CATgtcttacgggtcagttaccactgatatattcagaagaaattag
gi|18 : tataattctaaaatgaatccatgcccatggtgACATCAGATCTGAGTA------CTTCTATA-G-AG-CAACGAC-C-CACAAc
gi|2 : tttaccactgtcaTACGCCAGATCAGCGTAGTGTAGCTTCGAAT-GGAG-CACTAACAC-TATACGTTT-AAGGTAAATGTAGGCGGGAGCACCCCG-TCCCGTCGGT-GGGGATTTGGACTCCATCAAGAAA-TAAT--------G------AAG--------G--T---A-A-A---------TGTT---T---------GCCATTTT-TCA-GCG-TAAATGTTTAAG--------TCG-CATTTATTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--GGATATAACAATTTTAAATCGTTTTAAAAGTCATAGCTTATCA----CGCCGCT------------AACG--TCATGACACTGTACAGCCGTTTGAAAGAAACCAAA-T-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TTAACAGCAGAGCCAGGTGGCGATAACCCTTT---------------CATTAC--ACATTTGGA--TTT--------------------------CGAAGTGTA------CGCATTGA----CGTACGTGCGT--------ATGC-----CTGGATACGCGCCTGAA---------TTTATGTGCAGT--TTGTTATA-TCTATGTAAATtctcctgcagacgctcgtcggtgttgtcggctccca
gi|20 : AATTGTA------CGCATTGG----TGTACGTGCGT--------ATGC-----CTGGGTACTCAGCTG-----------TCTATacttttgagaacctttaattgtctgacagt
gi|21 : acGTA------CACATTGT----CGTACGTGC-T--------ATGC-----CTGGGTACGCGCCTG-----------TCTAt
gi|22 : -CTGACGAATTGTG------CGCATTGG----CGTATGTGCGT--------ATGT-----C
gi|3 : agaCTTCCGTTAAGAAAATACTGAAAATTAG------AAG--------G--C---ATA-A---------T--T---A-----T---GTTGTGCTCTCATGCC---AAA-TTTCAGAGTTAATGT-GGCAATTTGTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--AAAAATATCATTTTTTATTCATTTT--AAGTCATAGCTTATCA----TGCTGGT------------CGCA--TCATAGCACTGTCTCACCTTTTGAAAGAAAATAAACT----------AAATACAATTGTCATATG-AATCCATAAA
gi|3 : AGGCTGTGGAAGTCAATTGTCATTTG-GAACC-TAAACAGCAGAGTAAGGTGGTGATACCACTCTCTTTCTTTCTGTTTTTACTAC--ATATTTGGAA-TTTTTTATGTTTCCAC-T-T-TTG-CTGACGAATTGTA------CACACTGG----CATACGTGCGT--------ATGC-----CTGTATAGGCACCTG-----------TT----TTCAATACTTAATATACTCTGTTTAAATtgcactcctgatcaggaaggctgtggaagtcaattgtcatttggaacctaaacagcagagtaaggtggtgataccactctctttctttctgtttttactacatatttggaattttttatgtttccacttttgctgacgaattgtacacactggcatacgtgcgtatgcctgtataggcacctgttttcaatacttaatatactctgtttaaat
gi|4 : cttccgttaagaaaatactgaaaattagaaggcataattatgttgtgctctcatgccaaatttcagagttaatgtggcaatttgtttgtcacttttatactacatattagcaaggttaggaaacaaaaatatcattttttattcattttaagtcatagcttatcatgctggtcgcatcatagcactgtctcaccttttgaaagaaaataaactaaatacaattgtcatatgaatccataaatgcactcctgatcaggaAG--------A--T---A-ATG---------TGCT---TCCA--T---GCTACATT-TCA-GCC-TCAAT-CTT-------------G-CATTTTGTTCATCACTTTTAT----------ACTGAACATGAGCAATGTTAG-GAAAC--AAAAATAACGATTTTAAATCGATTTAAAAAGCAAAGCTTGTCA----CGCTG
gi|4 : aagtaaaagacT---------------TACCACTGATATAT--A--TTTTTTGTTTTTACAT-T-T-T-G-CTGACTAATTGTAACGTGGCGCATTCG----CGTACATGCATTCGCGTACATGCGTTTGCTGGATACACGTCTG-----------CTTGTATATAATaccgacaagagtatcgatgtctaataggtaaattaccactgatatatattttttgtttttacattttgctgactaattgtaacgtggcgcattcgcgtacatgcattcgcgtacatgcgtttgctggatacacgtctgcttgtatataattttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|5 : aagtaaaagacagataatgtgcttccatgctacatttcagcctcaatcttgcattttgttcatcacttttatactgaacatgagcaatgttaggaaacaaaaataacgattttaaatcgatttaaaaagcaaagcttgtcacgctgaccgacaagagtatcgatgtctaataggtaaaTACATCAGATCTGAGTAGCGTAGCTTCG-----------------------AATCG-AG--CA---------GCGAATCTCCCACTCTCGTCGAT-GGGGGTTTGGCTTCCACCAAAAAAACAAT-----TTCG------AAATATAGAAAG--C---A-A-AATTTAA---TGTTGCGT-----T---CTCGTTCT-TCA-----------TTTCAG--------T-------CTCTTTGTCACTTTCATTGATCTACTAACTGCATATAAGCAAGGTTAT-GAATCTTAAAAAtttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|6 : agctatttgaagtgaacacaatataatacaaatctaatcgttgtgaaaaagacgtttgaactggagttttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttacctgTACATCAGATCTGAGAAGCGAAGCTTCG-----------------------AATCG-AG--CA---------GCGAATCTCCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACC---AAAACAAT-----TTCG------AAA--------AATT---T-A-A---------TG-----T-----T---G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAA
gi|7 : aagccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgTACATCAGATCTGAGAAGCGAAGCTTCG-----------------------AATCG-AG--CA---------GCGAATCTCCCGCTCCCGTCAGT-GGGGGTTAGGCTTCCACC---AAAACAAT-----TTCG------AAA--------AATT---T-A-A---------TG-----T-----T---G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAAtcttaaaa
gi|8 : agccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgAAGAAA----------TTAG------GAG--------A--C---A-A-AAG-------TGTT---C-----TAT-GTTATAGT-TCA-GCTGTCA-----TC----------T-G-CATTTTGTTTGTCACTTTAAT----------ACTGCACATTAGCAAAGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAAGTATAGCTTGTCC----CACCGCT------------CACtcttaaaa
gi|8 : ggctcttcagtaaaaacatttTGC--ATATTTGGA--ATTTTT--GTTTT-A-----------TGATGAATTGTG------GGCATTAG----CGactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgatatgcatatttggaatttttgttttatgatgaattgtgggcattagcg
gi|9 : ggctcttcagtaaaaacatttaagaaattaggagacaaaagtgttctatgttatagttcagctgtcatctgcattttgtttgtcactttaatactgcacattagcaaagttaggaaacaaaaataacgattttaaatcgttttaaaaagtatagcttgtcccaccgctcacactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgataAAGGTAAG-GAAAC--GA----------TTTAAATCGTTTTTAGAATCATAGTTTATCA----CGCCGCT------------CACA--CCATGACACCGTCTCGCCGTTTGAAA-AAAATAAACA-TAA
gi|9 : CTCTGAAAATCGATTGTCATTTG-AAACC-TAAACAGTAGAGCCAGGCGCCAATACCCCTCT---------------TATTAC--ATATTTGCAAGTTTTATATGTTTT-ACTT-T-T-G-CTGAAGAATTGTA------CTCATTGG----CGTACGTGCGT--------AAGC-----CTGGGTACACGaacttccataatcaacatgaatccattatgcagcatttatgctcatgatacctctgaaaatcgattgtcatttgaaacctaaacagtagagccaggcgccaatacccctcttattacatatttgcaagttttatatgttttacttttgctgaagaattgtactcattggcgtacgtgcgtaagcctgggtacacg
blockSeqs : T GAATCAAGCAGAGACCCTACAAGTTGAGGGCAAATGTAGGAGG A T G T A A CTGAAAATTAGAAGGCATAATTATGTTGTGCTCTCATGCCAAATTTCAGAGTTAATGTGG T C TGATCTACTA T A TT TCTCGA T AACA AATGCTGTCCTA AG G A A T CTTTCTTTCTGTTTT TG T AG C CTGTT G ACGTGG CATA TCGCGTAC GTTTG CCAGATGGTTA T G AC A C T
blockSeqs : T GAATGGAGCACTAACACTATACGTTTAAGGTAAATGTAGGCGG C G . T A A ATTTCGAAATATAGAAAGCAAAATTTAATGTTGCGTTCTCGTTCTTCATTTCAGT T T TGATCTACTG T . . TAACAA T . . . . . . T . . T A C CTGTT . . CATA . . AA T T
blockSeqs : T GAATCGAGCAGC C G . T A A ATGAAGGTAAATGTTTGCCATTTTTCAGCGTAAATGTTTAAGTCG A G TGATCTACTG T . . TATCAT A . . . . . . G . . G . C CTTTT . . . . . . T A
blockSeqs : A GAATCGAGCAGC C G . T A A TTAGGAGACAAAAGTGTTCTATGTTATAGTTCAGCTGTCATCTG T G . G . . TAACGA A . . . . . . G . . G . C CTTTT . . . . . . T
blockSeqs : A GAATCGAGCAGC C A . A A A ATTTCGAAAAATTTAATGTTGCGTTCTCGAGCTTCATTTCAG T C . A . . TAACGA A . . . . . . G . . G . C CTTT . . . . . . .
blockSeqs : . . A . A A A ATTTCGAAAAATTTAATGTTGCGTTCTCGAGCTTCATTTCAG . C . A . . . A . . . . . . G . . TTTT . . . . . .
blockSeqs : . . AATGATGTTTTCTAATGGTATATTTCAGCCATAATCTTG . C . A . . T . . . . . . . . . . . .
blockSeqs : . . . G . T . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : GAATCGAGCAGC*********************************** TAACGA CTTTT***
originalCons : TACGTCAGATCTGAGTAGCGTAGCTTCGAAT-G-AG-CAGCGAC-C-TACAAGTCG-AGGGCAAGTGTAGGAGNGAGTCTCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNG------AAG--------G--T---A-A-A---------TGTT---T-----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-T-T-T-G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
finalCons : TACGTCAGATCTGAGTAGCGTAGCTTCGAATCGAGCAGC-----------------------------------GAGTCTCCCGCTCCCGTCGGT-GGGGGTTTGGCCTCCACCAAGAAAACAAT-----TTNG------AAG--------G--T---A-A-A---------TGTT---T-----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCACTTTT---G-CTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAGCACTGTCTACACTTCACCTTTTGAAAGAACAGTAAAATTTAAATACACTTGTCATGTGAACAGGGCCCTAATTCACTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555555555 222222222222 333333333333333 11 1111 11111111 33333333333 1
lowQualScore : 0 77 2 1 222222 33333 5 5 5 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 8888888888 1 4 66 0 888888 5 9999 999999999999 99 6 5 5 1 111111111111111 66 5 11 4 5 8 1 999999 4444 33333333 99999 55555555555 1 0 1 99 1 5 1
lowQualScore : . .. . . ...... ..... . . . . ......................................................................................................................... . . .......... . . .. . ...... . .... ............ .. . . . . ............... .. . .. . . . . ...... .... ........ ..... ........... . . . .. . . .
lowQualScore : 6 44 5 4 888888 11111 0 7 4 9 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 0 3333333333 0 0 99 4 444444 1 4444 333333333333 22 7 7 7 0 222222222222222 99 6 99 6 7 9 7 666666 2222 22222222 11111 00000000000 7 2 0 88 0 0 0
consensus : TACGCCAGATCTGAGTAGCGNAGCTTCGAATCGAGCAGCG------AGTCTCCCG----CTCCCGTCGG-TGG-GGGTTTGGCCTCCACCAAGAAAACAAT-----T--------TAG------AAG---A--T---A------A-A---------TG----TT---T----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG----------G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-TTTTGCTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
Reference ( family-583 ) : TACGTCAGATCTGAGTAGCGTAGCTTCGAATCGAGCAGCG------AGTCTCCCG----CTCCCGTCGG-TGG-GGGTTTGGCCTCCACCAAGAAAACAAT-----T--------TNG------AAG---G--T---A------A-A---------TG----TT---T----T---GCCGTNCT-TCA-GCC-TCAAT-TTTCAG--------T-G-CATTTTNTTTGTCACTTTTAT----------ACTGCACATNAGCAAGGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAATCATAGCTTATCA----CGCCGCT------------CACG--TCATGACACTGTCTCGCCGTTTGAAAGAAAATAAACT-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TAAACAGCAGAGCCAGNCGGCGATACCCCTCT---------------TATTAC--ATATTTGGA--TTTTTTATGTTTTCAC-TTTTGCTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATGC-----CTGGGTACGCGCCTG-----------TTTATGTNCAATACTTGNTATACTCTGTNTAAAT
gi|1 : TACGCCGAATATGAGCAGCGATGCTGCAAGTGGGAGAGTA------AGT---------------ATAGGACGG-GGACT----CTCAACCAAGAAAATA-------T--------TGG------AAAAGAG--T---A------G-ACAACTGATGTG----TT---C----TTATGCTATATT-TCA-GCC-TCAAT-CCT-------------G-CATTTTGATTGTAATGTTTAT----------ACTGCACATTAGCGATGTTCG-GAAAC--AAAAA----------AAAACGTTTTAAAA-TCATAGCTTGTCA----CGCCG
gi|1 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgTTT---------------TTTTAC--ATATTTTGA--ATTTTTATGTTTTCACATTGTGCTGACGAATTGTA------CGCATTGG----CGTACGTGCGT--------ATTC-----CTGGATACGCGCTTG-----------attcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgttttttttttacatattttgaatttttatgttttcacattgtgctgacgaattgtacgcattggcgtacgtgcgtattcctggatacgcgcttgacattatttactgt
gi|10 : atgtagtatacgatagtatcatattaaataaatgcaaatataccattcaggggcgtacctgaacgggtttgaactgtacgccgaatatgagcagcgatgctgcaagtgggagagtaagtataggacggggactctcaaccaagaaaatattggaaaagagtagacaactgatgtgttcttatgctatatttcagcctcaatcctgcattttgattgtaatgtttatactgcacattagcgatgttcggaaacaaaaaaaaacgttttaaaatcatagcttgtcacgccgattcagctgaccgacaagtctcgatgtcttattaatacattaccactgatatatgcggaagtaataagtagcatatattcctctcagcattcagttgtttatttgtttgattgtgtttAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAacattatttactgt
gi|10 : ttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGTTGCTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttct
gi|11 : ttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtAAACTATTTTTAAAATCATAGTTTACCA----CGCCGCT------------CAAG--TCATGACCCTGTCTTGCCGTTTGAAAGAAAATAAACT-TAAtct
gi|11 : gttaggaAGCTGTGAAAGTCGATTGTCATTTG-AAATC-TAAACAGCAGAACCAGTCGGCGATATTCTTCT---------------TATTAC--ATATTTTGA--TTTTTTATGTTTTCAC-TGTTGCTGACGAATTATA------CGCATTGGCATACGTACGTACGT--------ATGC-----CTGGGTaactacaataacgaatatgatctataatgcattcgtgctcatggtagctgtgaaagtcgattgtcatttgaaatctaaacagcagaaccagtcggcgatattcttcttattacatattttgattttttatgttttcactgttgctgacgaattatacgcattggcatacgtacgtacgtatgcctgggttc
gi|12 : gttaggaaaactatttttaaaatcatagtttaccacgccgctcaagtcatgaccctgtcttgccgtttgaaagaaaataaacttaaaactacaataacgaatatgatctataatgcattcgtgctcatggtTTTTATGATTTCAC-TTTGGCTTACGAATTGTA------CCCATT------TGTACGTGCGC--------GTTC-----CTGGATACGCGCCTGCCAGATGGTTATTCATGTTCAATAtc
gi|13 : gggcgtacctggacgcgtttggactgttcatcagttatgaacagcggcgctgcgagtggggcgtgggtaaggttttcaggggtcaaaatagaacatttgggaaattggaagaaaaatgatgcgttattataggtgtagttataattcagccAGGAGGG------AGTCTTCCG----ATCCCGTCTG-TGG-GGGTTTAGCCTCCAACAAGAAAAC--------T--------TGGGGAAAAAAG---A--TGACA------A-A---------TG----TT---G----T---Gtatccaaac
gi|14 : tatacaggggcgtactttaactgctcgccatagcttcaatcaggcagcgacgctacgagtggagggtcagtgtAAATTGTTTTAAAAATCATAACATAACAAACACGCTGCTAATGCTGTCCTACACGAGTCAAGACAATGTCTCTCTATTAGAAAGAAAACAAACTGTAAtttcctgctttatctcggcactaatgtggcgtttttgctgta
gi|15 : aaTACGCCAGACCTGAGTAGCATTGCTTTGAATCAAGCAGAG------Atattccatatatatccagaatacattcatgctcatgatattgttaattcaattgtcatttaaaccttaaaga
gi|15 : ggtagagaacttgggcatacctgaacaaatttgaactgCAAATGTAGGAGGG------AGTCTGCCC----CTCCTGCTGG-TGGGGGGTTTGGACTCAATCAAGAAccctacaagttgagggcaaatgtaggagggagtctgcccctcctgctggtggggggtttggactcaatcaagaacttttagaaatgaagg
gi|16 : ggtagagaacttgggcatacctgaacaaatttgaactgtacgccagacctgagtagcattgctttgaatcaagcagagaccctacaagttgagggAAA-----T--------TAG------AAA---A--C---A------A-A---------TGATGTTT---TCTAAT---GGTATATT-TCA-GCC-ATAAT-CTT-------------G-CATGTTCTT-GTCACTTTTAT----------ACTGCACATTAGCAATATTAGAAAAAC--AATAGTCTCGATcttttagaaatgaagg
gi|17 : ttcggGCTGTGGAAGTTAAGTGTCATTTGAAAATC-TAAA-AGCAGAGCCATTCGGCTATGCCCCTCT---------------CATgtcttacgggtcagttaccactgatatattcagaagaaattag
gi|18 : tataattctaaaatgaatccatgcccatggtgACATCAGATCTGAGTA------CTTCT-ATAGAGCAACGACCCACAATCTCCTGCAGACGCTCGTCGG-TGc
gi|2 : tttaccactgtcaTACGCCAGATCAGCGTAGTGTAGCTTCGAATGGAGCAttgtcggctccca
gi|2 : G------AGCACCCCG-----TCCCGTCGG-TGG-GGATTTGGACTCCATCAAGAAA-TAAT----------------G------AAG---G--T---A------A-A---------TG----TT---T--------GCCATTTT-TCA-GCG-TAAATGTTTAAG--------TCG-CATTTATTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--GGATATAACAATTTTAAATCGTTTTAAAAGTCATAGCTTATCA----CGCCGCT------------AACG--TCATGACACTGTACAGCCGTTTGAAAGAAACCAAA-T-TAAGCTGTGAAAGTCGATTGTCATTTG-AAACC-TTAACAGCAGAGCCAGGTGGCGATAACCCTTT---------------CATTAC--ACATTTGGA--TTT-----------------------CGAAGTGTA------CGCATTGA----CGTACGTGCGT--------ATGC-----CTGGATACGCGCCTGAA---------TTTATGTGCAGT--TTGTTATA-TCTATGTAAATctaacactatacgtttaaggtaaatgtaggcgggagcaccccgtcccgtcggtggggatttggactccatcaagaaataatgaaggtaaatgtttgccatttttcagcgtaaatgtttaagtcgcatttattttgtcacttttatactacatattagcaaggttaggaaacggatataacaattttaaatcgttttaaaagtcatagcttatcacgccgctaacgtcatgacactgtacagccgtttgaaagaaaccaaattaagctgtgaaagtcgattgtcatttgaaaccttaacagcagagccaggtggcgataaccctttcattacacatttggatttcgaagtgtacgcattgacgtacgtgcgtatgcctggatacgcgcctgaatttatgtgcagtttgttatatctatgtaaatacttttgagaacctttaattgtctgacagt
gi|20 : tacgccagatcagcgtagtgtagcttcgaatggagcactaacactatacgtttaaggtaaatgtaggcggAATTGTA------CGCATTGG----TGTACGTGCGT--------ATGC-----CTGGGTACTCAGCTG-----------TCTATacttttgagaacctttaattgtctgacagt
gi|21 : acGTA------CACATTGT----CGTACGTGC-T--------ATGC-----CTGGGTACGCGCCTG-----------TCTAt
gi|22 : CTGACGAATTGTG------CGCATTGG----CGTATGTGCGT--------ATGT-----C
gi|3 : agaCTTCCGTTAAGAAAATACTGAAAAT--------TAG------AAG---G--C---AT-----A-A---------T------T---A----T---GTTGTGCTCTCATGCC---AAA-TTTCAGAGTTAATGT-GGCAATTTGTTTGTCACTTTTAT----------ACTACATATTAGCAAGGTTAG-GAAAC--AAAAATATCATTTTTTATTCATTTT--AAGTCATAGCTTATCA----TGCTGGT------------CGCA--TCATAGCACTGTCTCACCTTTTGAAAGAAAATAAACT----------AAATACAATTGTCATATG-AATCCATAAA
gi|3 : AGGCTGTGGAAGTCAATTGTCATTTG-GAACC-TAAACAGCAGAGTAAGGTGGTGATACCACTCTCTTTCTTTCTGTTTTTACTAC--ATATTTGGAA-TTTTTTATGTTTCCAC-TTTTGCTGACGAATTGTA------CACACTGG----CATACGTGCGT--------ATGC-----CTGTATAGGCACCTG-----------TT----TTCAATACTTAATATACTCTGTTTAAATtgcactcctgatcaggaaggctgtggaagtcaattgtcatttggaacctaaacagcagagtaaggtggtgataccactctctttctttctgtttttactacatatttggaattttttatgtttccacttttgctgacgaattgtacacactggcatacgtgcgtatgcctgtataggcacctgttttcaatacttaatatactctgtttaaat
gi|4 : cttccgttaagaaaatactgaaaattagaaggcataattatgttgtgctctcatgccaaatttcagagttaatgtggcaatttgtttgtcacttttatactacatattagcaaggttaggaaacaaaaatatcattttttattcattttaagtcatagcttatcatgctggtcgcatcatagcactgtctcaccttttgaaagaaaataaactaaatacaattgtcatatgaatccataaatgcactcctgatcaggaAG---A--T---A------ATG---------TG----CT---TCCA-T---GCTACATT-TCA-GCC-TCAAT-CTT-------------G-CATTTTGTTCATCACTTTTAT----------ACTGAACATGAGCAATGTTAG-GAAAC--AAAAATAACGATTTTAAATCGATTTAAAAAGCAAAGCTTGTCA----CGCTG
gi|4 : aagtaaaagacT---------------TACCACTGATATAT--A--TTTTTT--GTTTTTACATTTTGCTGACTAATTGTAACGTGGCGCATTCG----CGTACATGCATTCGCGTACATGCGTTTGCTGGATACACGTCTG-----------CTTGTATATAATaccgacaagagtatcgatgtctaataggtaaattaccactgatatatattttttgtttttacattttgctgactaattgtaacgtggcgcattcgcgtacatgcattcgcgtacatgcgtttgctggatacacgtctgcttgtatataattttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|5 : aagtaaaagacagataatgtgcttccatgctacatttcagcctcaatcttgcattttgttcatcacttttatactgaacatgagcaatgttaggaaacaaaaataacgattttaaatcgatttaaaaagcaaagcttgtcacgctgaccgacaagagtatcgatgtctaataggtaaaTACATCAGATCTGAGTAGCGTAGCTTCGAATCGAGCAGCG------AATCTCCCA----CTCTCGTCGA-TGG-GGGTTTGGCTTCCACCAAAAAAACAAT-----TTCGAAATATAG------AAA---G--C---AAAATTTA-A---------TG----TTGCGT----T---CTCGTTCT-TCA-----------TTTCAG---------------TCTCTTTGTCACTTTCATTGATCTACTAACTGCATATAAGCAAGGTTAT-GAATCTTAAAAAtttctgtcacaaacagcagcaccctctgcctccgcagtatcataatcttacacta
gi|6 : agctatttgaagtgaacacaatataatacaaatctaatcgttgtgaaaaagacgtttgaactggagttttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttacctgTACATCAGATCTGAGAAGCGAAGCTTCGAATCGAGCAGCG------AATCTCCCG----CTCCCGTCAG-TGG-GGGTTAGGCTTCCACC---AAAACAAT-----T--------TCG------AAA---AATT---T------A-A---------TG---------T----T---G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAA
gi|7 : aagccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgTACATCAGATCTGAGAAGCGAAGCTTCGAATCGAGCAGCG------AATCTCCCG----CTCCCGTCAG-TGG-GGGTTAGGCTTCCACC---AAAACAAT-----T--------TCG------AAA---AATT---T------A-A---------TG---------T----T---G-CGTTCT-CGA-GCT-TCA---TTTCAG---------------TTTCTTTGTCACTTTCATTGATCTACTGACTGCATATAAGCAAGGTAAG-GAAtcttaaaa
gi|8 : agccatttgaagtgaacacaatataatacaaaaactaatcgttgtgaataagacgtttgaactggagtttaatcagttatcaacttattcgctttacagctgttacagctttggctgaggcgtacctggacgaattttaactgAAGAAA----------T--------TAG------GAG---A--C---A------A-AAG-------TG----TT---C----TAT-GTTATAGT-TCA-GCTGTCA-----TC----------T-G-CATTTTGTTTGTCACTTTAAT----------ACTGCACATTAGCAAAGTTAG-GAAAC--AAAAATAACGATTTTAAATCGTTTTAAAAAGTATAGCTTGTCC----CACCGCT------------CACtcttaaaa
gi|8 : ggctcttcagtaaaaacatttTGC--ATATTTGGA--ATTTTT--GTTTT-A--------TGATGAATTGTG------GGCATTAG----CGactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgatatgcatatttggaatttttgttttatgatgaattgtgggcattagcg
gi|9 : ggctcttcagtaaaaacatttaagaaattaggagacaaaagtgttctatgttatagttcagctgtcatctgcattttgtttgtcactttaatactgcacattagcaaagttaggaaacaaaaataacgattttaaatcgttttaaaaagtatagcttgtcccaccgctcacactgaccgacaagagtctcgatgccttttaggttaattaccactgatatattcggaagaaattagctcataaccctctcagccttcattgataAAGGTAAG-GAAAC--GA----------TTTAAATCGTTTTTAGAATCATAGTTTATCA----CGCCGCT------------CACA--CCATGACACCGTCTCGCCGTTTGAAA-AAAATAAACA-TAA
gi|9 : CTCTGAAAATCGATTGTCATTTG-AAACC-TAAACAGTAGAGCCAGGCGCCAATACCCCTCT---------------TATTAC--ATATTTGCAAGTTTTATATGTTTT-AC-TTTTGCTGAAGAATTGTA------CTCATTGG----CGTACGTGCGT--------AAGC-----CTGGGTACACGaacttccataatcaacatgaatccattatgcagcatttatgctcatgatacctctgaaaatcgattgtcatttgaaacctaaacagtagagccaggcgccaatacccctcttattacatatttgcaagttttatatgttttacttttgctgaagaattgtactcattggcgtacgtgcgtaagcctgggtacacg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAGCACTGTCTACACTTCACCTTTTGAAAGAACAGTAAAATTTAAATACACTTGTCATGTGAACAGGGCCCTAATTCACTC