lowQualScore : 1 1 555555 11 1
lowQualScore : . . ...... .. .
lowQualScore : 2 2 333333 99 5
consensus : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
Reference ( gi|10 ) : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
gi|18 : TTAAGTTGTATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGGATT-TTT
gi|9 : TTAAGTTGTATCG-TTGTTTAAACTTCAC-AAATAAAC------TT--TGTATT-TTTTT
gi|17 : TTAAGTTGTATCG-TTGTTTACACTTCAA-AATTAACC------TA--AGTATT-TTT
gi|8 : TTAAGTTGTATCG-TTGTATACACTTCAA-AAATAAAC------TT--AGTATT-TTT
gi|11 : TTAAGTTGTGTCG-TTGTAAACACTTTAC-AAATAAAC------TA--AGTATT-TTTTcc
gi|6 : TTAAGTTGTTTCT-TTGTTTACACTTCAC-AACTAAAC------AA--AGTATT-TTTTc
gi|26 : TTTAGTTGTATCG-TTGTTTACACTTCATAAAATAAAC------CA--AGTATT-ct
gi|14 : TTTAGTTGAATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGTACT-GTTT
gi|5 : TTGAATTGTGTCG-TTGTATACACTTTAC-AAATAAACT-----TA--AGTATT-TTTTT
gi|29 : TTAAGTTGTATCG-TTGTTTACACTCCAC-AAATAAA--------G--AATATT-c
gi|4 : TTAAGCTGTGTCG-TTGTATACATTTAAC-AAATAAAC------TA--AGTATT-CTTc
gi|32 : tTTAAGTTGTATCG-TTGTTAACACCTTAC-AAATAAAC------TA--Accg
gi|2 : TTAAATTGTTTCG-TTGTTTACACTTCAC-AAATTAAC------TA--AGT-TT-GTTTa
gi|27 : ttTTAAGTTGTATCG-TTATTT-CACTTCAC-AAACA----------A--AGCATT-TTTTccg
gi|3 : tTTAAGTTGTATCGTTTTTTTACACTTCAC-TAACAAAc
gi|1 : tTAAGCTGTATCG-TTGTTTACACTTCAC-AAATAAACTACATGTA--AGTATT-TTTgactgtctccgnnnn
gi|12 : TAAGTTGTGTCG-TTGTTTACACTTCAC-AAATAACC------CG--AATATT-TTTTTc
gi|30 : TAAATTATATCG-TTGTTTACACTTCAC-AAA-----------TA--AGTATT-TTTc
gi|13 : TAAGTTTTATCG-TTGTTTATACTTCAC-AAA-AAAA------AG--AGTATT-CTTTccg
gi|31 : AAGCTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-ccg
gi|25 : AAGTTGTATCG-TTGTTTACCCTTCAC-AAATAAAC------TT--AGTATT-TT
gi|15 : AAGTTGTATCG-TTGTTTGAACTTCAC-AAATAAAC------TA--AGTATG-TTTc
gi|7 : AAGTTGTATCG-TTGTTAACACTTCAC-AAATAAAC------TACTAGTAcc
gi|23 : gAATTTGTATCG-TT-TTTA-ACTCCAC-AAATAAAC------TA--AGTATT-TTTTagttcc
gi|19 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTc
gi|16 : aggGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTT
gi|24 : aggGTTGTATCG-TTGTTTACACTTCAC-AAATAAAA------TA--AGTAAT-TTTT
gi|28 : GTTGAATCG-TTGTTTACACTTCTC-AAATAAAC------TA--AGTATT-TTTc
gi|20 : TTGTATCG-TTGTTTATACTTCGC-AAATAAAc
gi|21 : tcagaTTGTATCT-TAGTTTACACTTCCC-AAACAAAgaatgtttccgt
gi|22 : tcagtTGTATCG-TTCTATACACTTTAC-AAATAAAC------TA--AGTATTATTTTTgaatgttcccgt
gi|33 : ATTG-TTGTTTACACTTCAC-AAATAAAC------TT--AGTATT-TTTtt
Alignments
lowQualScore : 1 1 555555 11 1
lowQualScore : . . ...... .. .
lowQualScore : 2 2 222222 88 4
consensus : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
Reference ( family-568 ) : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
gi|1 : TAAGCTGTATCG-TTGTTTACACTTCAC-AAATAAACTACATGTA--AGTATT-TTT
gi|10 : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTTc
gi|11 : TTAAGTTGTGTCG-TTGTAAACACTTTAC-AAATAAAC------TA--AGTATT-TTTT
gi|12 : TAAGTTGTGTCG-TTGTTTACACTTCAC-AAATAACC------CG--AATATT-TTTTTc
gi|13 : TAAGTTTTATCG-TTGTTTATACTTCAC-AAA-AAAA------AG--AGTATT-CTTTc
gi|14 : TTTAGTTGAATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGTACT-GTTTccg
gi|15 : AAGTTGTATCG-TTGTTTGAACTTCAC-AAATAAAC------TA--AGTATG-TTT
gi|16 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTcc
gi|17 : aggTTAAGTTGTATCG-TTGTTTACACTTCAA-AATTAACC------TA--AGTATT-TTT
gi|18 : TTAAGTTGTATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGGATT-TTT
gi|19 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTT
gi|2 : aggTTAAATTGTTTCG-TTGTTTACACTTCAC-AAATTAAC------TA--AGT-TT-GTTT
gi|20 : ttTTGTATCG-TTGTTTATACTTCGC-AAATAAAccg
gi|21 : tcagaTTGTATCT-TAGTTTACACTTCCC-AAACAAAgaatgtttccgt
gi|22 : tcagtTGTATCG-TTCTATACACTTTAC-AAATAAAC------TA--AGTATTATTTTTgaatgttcccgt
gi|23 : AATTTGTATCG-TT-TTTA-ACTCCAC-AAATAAAC------TA--AGTATT-TTTTtt
gi|24 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAA------TA--AGTAAT-TTTTc
gi|25 : AAGTTGTATCG-TTGTTTACCCTTCAC-AAATAAAC------TT--AGTATT-TTc
gi|26 : TTTAGTTGTATCG-TTGTTTACACTTCATAAAATAAAC------CA--AGTATT-c
gi|27 : TTAAGTTGTATCG-TTATTT-CACTTCAC-AAACA----------A--AGCATT-TTTT
gi|28 : tGTTGAATCG-TTGTTTACACTTCTC-AAATAAAC------TA--AGTATT-TTTc
gi|29 : TTAAGTTGTATCG-TTGTTTACACTCCAC-AAATAAA--------G--AATATT-c
gi|3 : TTAAGTTGTATCGTTTTTTTACACTTCAC-TAACAAAc
gi|30 : tTAAATTATATCG-TTGTTTACACTTCAC-AAA-----------TA--AGTATT-TTTgactgtctccgnnnn
gi|31 : AAGCTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-ccg
gi|32 : TTAAGTTGTATCG-TTGTTAACACCTTAC-AAATAAAC------TA--A
gi|33 : ATTG-TTGTTTACACTTCAC-AAATAAAC------TT--AGTATT-TTTa
gi|4 : TTAAGCTGTGTCG-TTGTATACATTTAAC-AAATAAAC------TA--AGTATT-CTT
gi|5 : tTTGAATTGTGTCG-TTGTATACACTTTAC-AAATAAACT-----TA--AGTATT-TTTTTccg
gi|6 : TTAAGTTGTTTCT-TTGTTTACACTTCAC-AACTAAAC------AA--AGTATT-TTTTc
gi|7 : AAGTTGTATCG-TTGTTAACACTTCAC-AAATAAAC------TACTAGTAct
gi|8 : gTTAAGTTGTATCG-TTGTATACACTTCAA-AAATAAAC------TT--AGTATT-TTTagttcc
gi|9 : TTAAGTTGTATCG-TTGTTTAAACTTCAC-AAATAAAC------TT--TGTATT-TTTTTcc
Alignments
lowQualScore : 1 1 555555 11 1
lowQualScore : . . ...... .. .
lowQualScore : 2 2 222222 88 4
consensus : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
Reference ( family-568 ) : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
gi|1 : TAAGCTGTATCG-TTGTTTACACTTCAC-AAATAAACTACATGTA--AGTATT-TTT
gi|10 : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTTc
gi|11 : TTAAGTTGTGTCG-TTGTAAACACTTTAC-AAATAAAC------TA--AGTATT-TTTT
gi|12 : TAAGTTGTGTCG-TTGTTTACACTTCAC-AAATAACC------CG--AATATT-TTTTTc
gi|13 : TAAGTTTTATCG-TTGTTTATACTTCAC-AAA-AAAA------AG--AGTATT-CTTTc
gi|14 : TTTAGTTGAATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGTACT-GTTTccg
gi|15 : AAGTTGTATCG-TTGTTTGAACTTCAC-AAATAAAC------TA--AGTATG-TTT
gi|16 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTcc
gi|17 : aggTTAAGTTGTATCG-TTGTTTACACTTCAA-AATTAACC------TA--AGTATT-TTT
gi|18 : TTAAGTTGTATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGGATT-TTT
gi|19 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTT
gi|2 : aggTTAAATTGTTTCG-TTGTTTACACTTCAC-AAATTAAC------TA--AGT-TT-GTTT
gi|20 : ttTTGTATCG-TTGTTTATACTTCGC-AAATAAAccg
gi|21 : tcagaTTGTATCT-TAGTTTACACTTCCC-AAACAAAgaatgtttccgt
gi|22 : tcagtTGTATCG-TTCTATACACTTTAC-AAATAAAC------TA--AGTATTATTTTTgaatgttcccgt
gi|23 : AATTTGTATCG-TT-TTTA-ACTCCAC-AAATAAAC------TA--AGTATT-TTTTtt
gi|24 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAA------TA--AGTAAT-TTTTc
gi|25 : AAGTTGTATCG-TTGTTTACCCTTCAC-AAATAAAC------TT--AGTATT-TTc
gi|26 : TTTAGTTGTATCG-TTGTTTACACTTCATAAAATAAAC------CA--AGTATT-c
gi|27 : TTAAGTTGTATCG-TTATTT-CACTTCAC-AAACA----------A--AGCATT-TTTT
gi|28 : tGTTGAATCG-TTGTTTACACTTCTC-AAATAAAC------TA--AGTATT-TTTc
gi|29 : TTAAGTTGTATCG-TTGTTTACACTCCAC-AAATAAA--------G--AATATT-c
gi|3 : TTAAGTTGTATCGTTTTTTTACACTTCAC-TAACAAAc
gi|30 : tTAAATTATATCG-TTGTTTACACTTCAC-AAA-----------TA--AGTATT-TTTgactgtctccgnnnn
gi|31 : AAGCTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-ccg
gi|32 : TTAAGTTGTATCG-TTGTTAACACCTTAC-AAATAAAC------TA--A
gi|33 : ATTG-TTGTTTACACTTCAC-AAATAAAC------TT--AGTATT-TTTa
gi|4 : TTAAGCTGTGTCG-TTGTATACATTTAAC-AAATAAAC------TA--AGTATT-CTT
gi|5 : tTTGAATTGTGTCG-TTGTATACACTTTAC-AAATAAACT-----TA--AGTATT-TTTTTccg
gi|6 : TTAAGTTGTTTCT-TTGTTTACACTTCAC-AACTAAAC------AA--AGTATT-TTTTc
gi|7 : AAGTTGTATCG-TTGTTAACACTTCAC-AAATAAAC------TACTAGTAct
gi|8 : gTTAAGTTGTATCG-TTGTATACACTTCAA-AAATAAAC------TT--AGTATT-TTTagttcc
gi|9 : TTAAGTTGTATCG-TTGTTTAAACTTCAC-AAATAAAC------TT--TGTATT-TTTTTcc
blockSeqs : T A T CT A
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : ******
originalCons : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
finalCons : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
Alignments
lowQualScore : 1 1 555555 11 1
lowQualScore : . . ...... .. .
lowQualScore : 2 2 222222 88 4
consensus : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
Reference ( family-568 ) : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTT
gi|1 : TAAGCTGTATCG-TTGTTTACACTTCAC-AAATAAACTACATGTA--AGTATT-TTT
gi|10 : TTAAGTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTTc
gi|11 : TTAAGTTGTGTCG-TTGTAAACACTTTAC-AAATAAAC------TA--AGTATT-TTTT
gi|12 : TAAGTTGTGTCG-TTGTTTACACTTCAC-AAATAACC------CG--AATATT-TTTTTc
gi|13 : TAAGTTTTATCG-TTGTTTATACTTCAC-AAA-AAAA------AG--AGTATT-CTTTc
gi|14 : TTTAGTTGAATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGTACT-GTTTccg
gi|15 : AAGTTGTATCG-TTGTTTGAACTTCAC-AAATAAAC------TA--AGTATG-TTT
gi|16 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTTcc
gi|17 : aggTTAAGTTGTATCG-TTGTTTACACTTCAA-AATTAACC------TA--AGTATT-TTT
gi|18 : TTAAGTTGTATCG-TTGTTTACATTTCAC-AAATAAAC------TA--AGGATT-TTT
gi|19 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-TTTT
gi|2 : aggTTAAATTGTTTCG-TTGTTTACACTTCAC-AAATTAAC------TA--AGT-TT-GTTT
gi|20 : ttTTGTATCG-TTGTTTATACTTCGC-AAATAAAccg
gi|21 : tcagaTTGTATCT-TAGTTTACACTTCCC-AAACAAAgaatgtttccgt
gi|22 : tcagtTGTATCG-TTCTATACACTTTAC-AAATAAAC------TA--AGTATTATTTTTgaatgttcccgt
gi|23 : AATTTGTATCG-TT-TTTA-ACTCCAC-AAATAAAC------TA--AGTATT-TTTTtt
gi|24 : GTTGTATCG-TTGTTTACACTTCAC-AAATAAAA------TA--AGTAAT-TTTTc
gi|25 : AAGTTGTATCG-TTGTTTACCCTTCAC-AAATAAAC------TT--AGTATT-TTc
gi|26 : TTTAGTTGTATCG-TTGTTTACACTTCATAAAATAAAC------CA--AGTATT-c
gi|27 : TTAAGTTGTATCG-TTATTT-CACTTCAC-AAACA----------A--AGCATT-TTTT
gi|28 : tGTTGAATCG-TTGTTTACACTTCTC-AAATAAAC------TA--AGTATT-TTTc
gi|29 : TTAAGTTGTATCG-TTGTTTACACTCCAC-AAATAAA--------G--AATATT-c
gi|3 : TTAAGTTGTATCGTTTTTTTACACTTCAC-TAACAAAc
gi|30 : tTAAATTATATCG-TTGTTTACACTTCAC-AAA-----------TA--AGTATT-TTTgactgtctccgnnnn
gi|31 : AAGCTGTATCG-TTGTTTACACTTCAC-AAATAAAC------TA--AGTATT-ccg
gi|32 : TTAAGTTGTATCG-TTGTTAACACCTTAC-AAATAAAC------TA--A
gi|33 : ATTG-TTGTTTACACTTCAC-AAATAAAC------TT--AGTATT-TTTa
gi|4 : TTAAGCTGTGTCG-TTGTATACATTTAAC-AAATAAAC------TA--AGTATT-CTT
gi|5 : tTTGAATTGTGTCG-TTGTATACACTTTAC-AAATAAACT-----TA--AGTATT-TTTTTccg
gi|6 : TTAAGTTGTTTCT-TTGTTTACACTTCAC-AACTAAAC------AA--AGTATT-TTTTc
gi|7 : AAGTTGTATCG-TTGTTAACACTTCAC-AAATAAAC------TACTAGTAct
gi|8 : gTTAAGTTGTATCG-TTGTATACACTTCAA-AAATAAAC------TT--AGTATT-TTTagttcc
gi|9 : TTAAGTTGTATCG-TTGTTTAAACTTCAC-AAATAAAC------TT--TGTATT-TTTTTcc