lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888 1 11 66666666666666666 222 4444444444 11111111 1
lowQualScore : 6 222222222222222222222222222222222222222222222222222222222222222222 5 6 0 22 9 22222222222222222 1 666 3 77777 11 4444444444 1 77777 22222222 7 2 555 2 5 11 9 7
lowQualScore : . .................................................................. . . . .. . ................. . ... . ..... .. .......... . ..... ........ . . ... . . .. . .
lowQualScore : 0 000000000000000000000000000000000000000000000000000000000000000000 0 0 7 00 0 77777777777777777 4 000 3 33333 77 3333333333 9 11111 00000000 1 9 000 4 5 77 4 4
consensus : NNAAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAGTTG--------ACCAAGCCCGGTCCAATATAAT-AA-TNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAG-TATTTCAATA-----TGCAAGCAC-ATC----CAAAGG-GTG---TGTTATGCCCAAATGGAACGACANATTTG
Reference ( gi|3 ) : GCAAACATTTTTA-GATTTATTAATGGTCCAGTTATAT---ATAAGA----GTA----TATATAAGTTCTCATATACACCCAACCCGACCCAGTATACT-A--TCA-AGAATATCGTCATCTTATCCAATA-T--A--CAAAATGTGTGTAAG-CGTTTCAATA-----TGCAAGCAC-GTC----CAAATG-GTG---TATTGTGCCTAAATGAAACGACACATTTG
gi|1 : AAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAGTTG--------ACCAAGCCCTGTCCACTATGATGA--TAATAGAATAACGTAACCT------ATA-T----------T-TGGGTAAC-AATTCCAAGA-----TGCAAACAC-ATC----CAAA-G-GTGAACTATTATGCCTTAATGGAACGACATATTTG
gi|7 : agaCCTGGTTCAATATAAT-AAACCA-A-AATGACATTATCATGTCCAATA-T--A--CAAAATGTGTAT--G-TATTTCAATA-----TGCTAGAAT-ATT----TAAAGG-GTG---TGTCACTCCAAGATGGAATAATAAATTttattttatattgtgtttacatttattctgtgtaatg
gi|10 : gccatcaaaattaggCTGGTCCAATATAAA-AA-TGA-AGA-TGACATTATCCAGTCCAATA-T--T--CAAAATAT-T-TAAG-TATTTCAATA-----TGCAATC-C-CTC----CAATGG-GTG---ga
gi|6 : aCGTCATCCGGTCTAATA-T--AACCAA----TCTGTAATTCTTTTTAA-A-----TGTAACCAC-ATC----AAACAG-GCG---TATTATGCCTAAATCTAACGACACATTTG
gi|11 : atgaGTCATCCGGTCCAATA-T--A--CAAAA-----GTA-----TTTCAA-A-----TGCAAGCAT-ATC----CAAAGG-TTG---TATTTTGCCTCAATGGAATGACAAATTTGttatttttgtattgtgaagatttccgtattaaaaacaatacatggtgttt
gi|5 : aagATCCGGTTCAATA-T--A--CAAAATGTGTAT-------TTCAATA-----TGCAAGCAA-AAC----C-AATGAGTG---TATTATGCCCAAACGAAATGGCAAATTTGt
gi|8 : ggtctggtcaaatgtaaaactggacaacatgATCCAGTA-T--G--CAAAAAGTGT--AAG-TTATTCAACA-----AGTTAACAC-ATCTATGTAAAGA-GTG---TGTTGTGTCCAAATG-GGCGACAttactttttgtagtgtttagaaatattcggtataatatatattattt
gi|4 : atatgTTCAATA-T--A--CAAAATGTGTGT--G-TATTTCAACA-----TGCAGGCAC-ATT----CAAAGG-GTG---TGTTATGTCCAAATTGAATGACAAATTTGaactattgtt
gi|9 : atcattatacctcattttcacatttccttctttgttgaaaatagtgtcatcaatatgttacaggtctgatataaaaattgggataacatattcaggTCCAATC-T--A--CAAAATGT---TAAT-TATTTCCATA-----TGCAAGCAC-ATC----TAAAGT-GTG---T-TTATGCCTAAATGGAATAACAAATTTat
gi|14 : gTCCAATA-TGTA--CAAA----GTGTAAG-ATTTTCAATA-----TGCAAGCAC----------AAGG-ATG---GGTTATGCCCAAATGTAACGttgtattatat
gi|2 : TCCAATA-A--A--CAAAAAGTGT-T------TTTCAGTA-----TTCAAACAC-ATC----CAACTG-GTG---TGTTATGCCCTTATGGAACAAAGCAT
gi|12 : ataatgccaatatattagaatatgggccggtcccggtacagaatatgaatgactccatacggAATAAT--A--CAAAATGTGTG--AG-TATTTCAATA-----CGGAAACAC-AT------GAAGG-ATG-----CTATGGCCAAATGGTACGAcagttgtaatactcgttttgtatttccaatataatataacaaaactacatgatgttt
gi|15 : ttg--CAAAATGT-----AG-TATTTCAATA-----TGCAATCACAATA----TAAG-G-GTG---TATTACGCCCAAATtttttttt
gi|13 : AAATGTGTG--AA-TATTTCAATATGCATTGCAAGCAC-ATC----CAAA---GAG---TATCATTCCT-AATGGAACAACATATTTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTATCATACCTCATTTTCAAATTTATGGAACA
Alignments
lowQualScore : 11 2 222 2222 11 666666666666666 22222 22222
lowQualScore : 77 0 55 4 4 111 4 3333 00 555555555555555 0 5 11111 3 1 2 3 66666 0 22222 0 66666 5555 444 1 1
lowQualScore : .. . .. . . ... . .... .. ............... . . ..... . . . . ..... . ..... . ..... .... ... . .
lowQualScore : 55 0 55 0 0 000 0 5555 77 000000000000000 8 4 11111 2 9 9 1 11111 9 88888 3 77777 7777 777 6 0
consensus : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG----TTG--------ACCGGGCCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
Reference ( family-562 ) : NNAAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAG----TTG--------ACCAAGCCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACANATTTG
gi|1 : AAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAG----TTG--------ACCAAGCCCTGTCCACTATGATGATAATAGAATAACGTAACC--------TA-T---------ATTTGGGTAACAATTCCAAGATGCA-----AACACATCCA----AA-GGTGAACTATTATGCCTTAATGGAACGACATATTTG
gi|10 : agaCTGGTCCAATATAAAAATGA-AGA-TGACATTATCCAGTCCAATA-T--T--CAAAATAT-T-TAAGTATTTCAATATGCA-----ATC-CCTCCA----ATGGGTG---ttattttatattgtgtttacatttattctgtgtaatg
gi|11 : aGTCATCCGGTCCAATA-T--A--CAAAA---------GTATTTCAA-ATGCA-----AGCATATCCA----AAGGTTG---TATTTTGCCTCAATGGAATGACAAATTTG
gi|12 : aagAATAAT--A--CAAAATGTGTG--AGTATTTCAATACGGA-----AACACAT--G----AAGG--A---TGCTATGGCCAAATGGTACGAt
gi|13 : ttgAAATGTGTG--AATATTTCAATATGCATTGCAAGCACATCCA----AAGA--G---TATCATTCCT-AATGGAACAACATATTTGtttttttt
gi|14 : TCCAATA-TGTA--CAAA----GTGTAAGATTTTCAATATGCA-----AGCAC---------AAGGATG---GGTTATGCCCAAATGTAACG
gi|15 : --CAAAATGT-----AGTATTTCAATATGCA-----ATCACAATAT----AAGGGTG---TATTACGCCCAAAT
gi|2 : TGCCAATATATTAGAATATGG--------GCCGGTCCCGGTACAG---AATA-T----GAATGACTCCATACGGTCCAATA-A--A--CAAAAAGTGT-----T-TTTCAGTATTCA-----AACACATCCA----ACTGGTG---TGTTATGCCCTTATGGAACAA
gi|3 : ataaAAACATTTTTA-GATTTATTAATGGTCCAGTTATAT---ATAAGA----GTA----TATATAAG----TTCTCATATACACCCAACCCGACCCAGTATACTA-TCA-AGAATATCGTCATCTTATCCAATA-T--A--CAAAATGTGTGTAAGCGTTTCAATATGCA-----AGCACGTCCA----AATGGTG---TATTGTGCCTAAATGAAACGACACATTTGagcatcagttgtaatactcgttttgtatttccaatataatataacaaaactacatgatgttt
gi|4 : gcGGTCTGATATAAAAATTG-GGA-TAACATATTCAGGTTCAATA-T--A--CAAAATGTGTGT--GTATTTCAACATGCA-----GGCACATTCA----AAGGGTG---TGTTATGTCCAAATTGAATGACAAATTTG
gi|5 : atcattatacctcattttcacatttccttctttgttgaaaatagtgtcatcaatatgttacaGTCTGGTCAAATGTAA-AACT---GGACAACATGATCCGGTTCAATA-T--A--CAAAATGTGT------ATTTCAATATGCA-----AGCAAAACCA----ATGAGTG---TATTATGCCCAAACGAAATGGCAAATTTGat
gi|6 : gATGACGTCATCCGGTCTAATA-T--AACCAA----TCTGTAATTCTTTTTAAATGTA-----ACCACATCAA----ACAGGCG---TATTATGCCTAAATCTAACGACACATTTGttactttttgtagtgtttagaaatattcggtataatatatattattt
gi|7 : AGGCCTGGTTCAATATAATAAACC-AAAATGACATTATCATGTCCAATA-T--A--CAAAATGTGTAT--GTATTTCAATATGCT-----AGAATATTTA----AAGGGTG---TGTCACTCCAAGATGGAATAATAAATTttatttttgtattgtgaagatttccgtattaaaaacaatacatggtgttt
gi|8 : gccatcaaaattGATCCAGTA-T--G--CAAAAAGTGT--AAGTTATTCAACAAGTT-----AACACATCTATGTAAAGAGTG---TGTTGTGTCCAAATGG-GCGACAAACTga
gi|9 : atatGTCCAATC-T--A--CAAAATGT---TAATTATTTCCATATGCA-----AGCACATCTA----AAGTGTG---T-TTATGCCTAAATGGAATAACAAATTTattgtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATCATACCTCATTTTCAAATTTATGGAACA
Alignments
lowQualScore : 11 1 222 2222 11 666666666666666 22222 22222
lowQualScore : 66 5 22 1 1 111 1 3333 00 555555555555555 3 5 11111 3 1 2 3 66666 0 22222 0 66666 5555 444 1 1
lowQualScore : .. . .. . . ... . .... .. ............... . . ..... . . . . ..... . ..... . ..... .... ... . .
lowQualScore : 00 5 00 0 0 000 0 5555 33 000000000000000 7 4 11111 2 9 9 1 11111 9 88888 3 77777 7777 777 6 0
consensus : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG----TTG--------ACCCGGCCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
Reference ( family-562 ) : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG----TTG--------ACCGGGCCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
gi|1 : AAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAG----TTG--------ACCAAGCCCTGTCCACTATGATGATAATAGAATAACGTAACC--------TA-T---------ATTTGGGTAACAATTCCAAGATGCA-----AACACATCCA----AA-GGTGAACTATTATGCCTTAATGGAACGACATATTTG
gi|10 : agaCTGGTCCAATATAAAAATGA-AGA-TGACATTATCCAGTCCAATA-T--T--CAAAATAT-T-TAAGTATTTCAATATGCA-----ATC-CCTCCA----ATGGGTG---ttattttatattgtgtttacatttattctgtgtaatg
gi|11 : aGTCATCCGGTCCAATA-T--A--CAAAA---------GTATTTCAA-ATGCA-----AGCATATCCA----AAGGTTG---TATTTTGCCTCAATGGAATGACAAATTTG
gi|12 : aagAATAAT--A--CAAAATGTGTG--AGTATTTCAATACGGA-----AACACAT--G----AAGG--A---TGCTATGGCCAAATGGTACGAt
gi|13 : ttgAAATGTGTG--AATATTTCAATATGCATTGCAAGCACATCCA----AAGA--G---TATCATTCCT-AATGGAACAACATATTTGtttttttt
gi|14 : TCCAATA-TGTA--CAAA----GTGTAAGATTTTCAATATGCA-----AGCAC---------AAGGATG---GGTTATGCCCAAATGTAACG
gi|15 : --CAAAATGT-----AGTATTTCAATATGCA-----ATCACAATAT----AAGGGTG---TATTACGCCCAAAT
gi|2 : TGCCAATATATTAGAATATGG--------GCCGGTCCCGGTACAG---AATA-T----GAATGACTCCATACGGTCCAATA-A--A--CAAAAAGTGT-----T-TTTCAGTATTCA-----AACACATCCA----ACTGGTG---TGTTATGCCCTTATGGAACAA
gi|3 : ataaAAACATTTTTA-GATTTATTAATGGTCCAGTTATAT---ATAAGA----GTA----TATATAAG----TTCTCATATACACCCAACCCGACCCAGTATACTA-TCA-AGAATATCGTCATCTTATCCAATA-T--A--CAAAATGTGTGTAAGCGTTTCAATATGCA-----AGCACGTCCA----AATGGTG---TATTGTGCCTAAATGAAACGACACATTTGagcatcagttgtaatactcgttttgtatttccaatataatataacaaaactacatgatgttt
gi|4 : gcGGTCTGATATAAAAATTG-GGA-TAACATATTCAGGTTCAATA-T--A--CAAAATGTGTGT--GTATTTCAACATGCA-----GGCACATTCA----AAGGGTG---TGTTATGTCCAAATTGAATGACAAATTTG
gi|5 : atcattatacctcattttcacatttccttctttgttgaaaatagtgtcatcaatatgttacaGGTCTGGTCAAATGTAA-AACT---GGACAACATGATCCGGTTCAATA-T--A--CAAAATGTGT------ATTTCAATATGCA-----AGCAAAACCA----ATGAGTG---TATTATGCCCAAACGAAATGGCAAATTTGat
gi|6 : ATGACGTCATCCGGTCTAATA-T--AACCAA----TCTGTAATTCTTTTTAAATGTA-----ACCACATCAA----ACAGGCG---TATTATGCCTAAATCTAACGACACATTTGttactttttgtagtgtttagaaatattcggtataatatatattattt
gi|7 : GGCCTGGTTCAATATAATAAACC-AAAATGACATTATCATGTCCAATA-T--A--CAAAATGTGTAT--GTATTTCAATATGCT-----AGAATATTTA----AAGGGTG---TGTCACTCCAAGATGGAATAATAAATTttatttttgtattgtgaagatttccgtattaaaaacaatacatggtgttt
gi|8 : gccatcaaaattaGATCCAGTA-T--G--CAAAAAGTGT--AAGTTATTCAACAAGTT-----AACACATCTATGTAAAGAGTG---TGTTGTGTCCAAATGG-GCGACAAACTga
gi|9 : atatGTCCAATC-T--A--CAAAATGT---TAATTATTTCCATATGCA-----AGCACATCTA----AAGTGTG---T-TTATGCCTAAATGGAATAACAAATTTattgtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATCATACCTCATTTTCAAATTTATGGAACA
Alignments
lowQualScore : 11 1 222 2222 11 66666666666666 22222 22222
lowQualScore : 66 5 22 1 1 111 1 3333 00 00000000000000 8 5 11111 3 1 2 3 66666 0 22222 0 66666 5555 444 1 1
lowQualScore : .. . .. . . ... . .... .. .............. . . ..... . . . . ..... . ..... . ..... .... ... . .
lowQualScore : 00 5 00 0 0 000 0 5555 33 33333333333333 0 4 11111 2 9 9 1 11111 9 88888 3 77777 7777 777 6 0
consensus : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
Reference ( family-562 ) : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
gi|1 : AAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAG--T-TG--------ACCAAG-CCCTGTCCACTATGATGATAATAGAATAACGTAACC--------TA-T---------ATTTGGGTAACAATTCCAAGATGCA-----AACACATCCA----AA-GGTGAACTATTATGCCTTAATGGAACGACATATTTG
gi|10 : agaCTGGTCCAATATAAAAATGA-AGA-TGACATTATCCAGTCCAATA-T--T--CAAAATAT-T-TAAGTATTTCAATATGCA-----ATC-CCTCCA----ATGGGTG---ttattttatattgtgtttacatttattctgtgtaatg
gi|11 : aGTCATCCGGTCCAATA-T--A--CAAAA---------GTATTTCAA-ATGCA-----AGCATATCCA----AAGGTTG---TATTTTGCCTCAATGGAATGACAAATTTG
gi|12 : aagAATAAT--A--CAAAATGTGTG--AGTATTTCAATACGGA-----AACACAT--G----AAGG--A---TGCTATGGCCAAATGGTACGAt
gi|13 : ttgAAATGTGTG--AATATTTCAATATGCATTGCAAGCACATCCA----AAGA--G---TATCATTCCT-AATGGAACAACATATTTGtttttttt
gi|14 : TCCAATA-TGTA--CAAA----GTGTAAGATTTTCAATATGCA-----AGCAC---------AAGGATG---GGTTATGCCCAAATGTAACG
gi|15 : --CAAAATGT-----AGTATTTCAATATGCA-----ATCACAATAT----AAGGGTG---TATTACGCCCAAAT
gi|2 : TGCCAATATATTAGAATATG--------GGCCGGTCCCGGTACAG---AATA-T----GAATGACTCCATACGGTCCAATA-A--A--CAAAAAGTGT-----T-TTTCAGTATTCA-----AACACATCCA----ACTGGTG---TGTTATGCCCTTATGGAACAA
gi|3 : ataaAAACATTTTTA-GATTTATTAATGGTCCAGTTATAT---ATAAGA----GTA----TATATAAG--T-TCTCATATACACCCAA-CCCGACCCAGTATACTA-TCA-AGAATATCGTCATCTTATCCAATA-T--A--CAAAATGTGTGTAAGCGTTTCAATATGCA-----AGCACGTCCA----AATGGTG---TATTGTGCCTAAATGAAACGACACATTTGagcatcagttgtaatactcgttttgtatttccaatataatataacaaaactacatgatgttt
gi|4 : gcGGTCTGATATAAAAATTG-GGA-TAACATATTCAGGTTCAATA-T--A--CAAAATGTGTGT--GTATTTCAACATGCA-----GGCACATTCA----AAGGGTG---TGTTATGTCCAAATTGAATGACAAATTTG
gi|5 : atcattatacctcattttcacatttccttctttgttgaaaatagtgtcatcaatatgttacaGG-TCTGGTCAAATGTAA-AACT---GGACAACATGATCCGGTTCAATA-T--A--CAAAATGTGT------ATTTCAATATGCA-----AGCAAAACCA----ATGAGTG---TATTATGCCCAAACGAAATGGCAAATTTGat
gi|6 : ATGACGTCATCCGGTCTAATA-T--AACCAA----TCTGTAATTCTTTTTAAATGTA-----ACCACATCAA----ACAGGCG---TATTATGCCTAAATCTAACGACACATTTGttactttttgtagtgtttagaaatattcggtataatatatattattt
gi|7 : GG-CCTGGTTCAATATAATAAACC-AAAATGACATTATCATGTCCAATA-T--A--CAAAATGTGTAT--GTATTTCAATATGCT-----AGAATATTTA----AAGGGTG---TGTCACTCCAAGATGGAATAATAAATTttatttttgtattgtgaagatttccgtattaaaaacaatacatggtgttt
gi|8 : gccatcaaaattaGATCCAGTA-T--G--CAAAAAGTGT--AAGTTATTCAACAAGTT-----AACACATCTATGTAAAGAGTG---TGTTGTGTCCAAATGG-GCGACAAACTga
gi|9 : atatGTCCAATC-T--A--CAAAATGT---TAATTATTTCCATATGCA-----AGCACATCTA----AAGTGTG---T-TTATGCCTAAATGGAATAACAAATTTattgtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATCATACCTCATTTTCAAATTTATGGAACA
Alignments
lowQualScore : 11 1 222 2222 11 66666666666666 22222 22222
lowQualScore : 66 5 22 1 1 111 1 3333 00 00000000000000 8 5 11111 3 1 2 3 66666 0 22222 0 66666 5555 444 1 1
lowQualScore : .. . .. . . ... . .... .. .............. . . ..... . . . . ..... . ..... . ..... .... ... . .
lowQualScore : 00 5 00 0 0 000 0 5555 33 33333333333333 0 4 11111 2 9 9 1 11111 9 88888 3 77777 7777 777 6 0
consensus : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
Reference ( family-562 ) : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
gi|1 : AAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAG--T-TG--------ACCAAG-CCCTGTCCACTATGATGATAATAGAATAACGTAACC--------TA-T---------ATTTGGGTAACAATTCCAAGATGCA-----AACACATCCA----AA-GGTGAACTATTATGCCTTAATGGAACGACATATTTG
gi|10 : agaCTGGTCCAATATAAAAATGA-AGA-TGACATTATCCAGTCCAATA-T--T--CAAAATAT-T-TAAGTATTTCAATATGCA-----ATC-CCTCCA----ATGGGTG---ttattttatattgtgtttacatttattctgtgtaatg
gi|11 : aGTCATCCGGTCCAATA-T--A--CAAAA---------GTATTTCAA-ATGCA-----AGCATATCCA----AAGGTTG---TATTTTGCCTCAATGGAATGACAAATTTG
gi|12 : aagAATAAT--A--CAAAATGTGTG--AGTATTTCAATACGGA-----AACACAT--G----AAGG--A---TGCTATGGCCAAATGGTACGAt
gi|13 : ttgAAATGTGTG--AATATTTCAATATGCATTGCAAGCACATCCA----AAGA--G---TATCATTCCT-AATGGAACAACATATTTGtttttttt
gi|14 : TCCAATA-TGTA--CAAA----GTGTAAGATTTTCAATATGCA-----AGCAC---------AAGGATG---GGTTATGCCCAAATGTAACG
gi|15 : --CAAAATGT-----AGTATTTCAATATGCA-----ATCACAATAT----AAGGGTG---TATTACGCCCAAAT
gi|2 : TGCCAATATATTAGAATATG--------GGCCGGTCCCGGTACAG---AATA-T----GAATGACTCCATACGGTCCAATA-A--A--CAAAAAGTGT-----T-TTTCAGTATTCA-----AACACATCCA----ACTGGTG---TGTTATGCCCTTATGGAACAA
gi|3 : ataaAAACATTTTTA-GATTTATTAATGGTCCAGTTATAT---ATAAGA----GTA----TATATAAG--T-TCTCATATACACCCAA-CCCGACCCAGTATACTA-TCA-AGAATATCGTCATCTTATCCAATA-T--A--CAAAATGTGTGTAAGCGTTTCAATATGCA-----AGCACGTCCA----AATGGTG---TATTGTGCCTAAATGAAACGACACATTTGagcatcagttgtaatactcgttttgtatttccaatataatataacaaaactacatgatgttt
gi|4 : gcGGTCTGATATAAAAATTG-GGA-TAACATATTCAGGTTCAATA-T--A--CAAAATGTGTGT--GTATTTCAACATGCA-----GGCACATTCA----AAGGGTG---TGTTATGTCCAAATTGAATGACAAATTTG
gi|5 : atcattatacctcattttcacatttccttctttgttgaaaatagtgtcatcaatatgttacaGG-TCTGGTCAAATGTAA-AACT---GGACAACATGATCCGGTTCAATA-T--A--CAAAATGTGT------ATTTCAATATGCA-----AGCAAAACCA----ATGAGTG---TATTATGCCCAAACGAAATGGCAAATTTGat
gi|6 : ATGACGTCATCCGGTCTAATA-T--AACCAA----TCTGTAATTCTTTTTAAATGTA-----ACCACATCAA----ACAGGCG---TATTATGCCTAAATCTAACGACACATTTGttactttttgtagtgtttagaaatattcggtataatatatattattt
gi|7 : GG-CCTGGTTCAATATAATAAACC-AAAATGACATTATCATGTCCAATA-T--A--CAAAATGTGTAT--GTATTTCAATATGCT-----AGAATATTTA----AAGGGTG---TGTCACTCCAAGATGGAATAATAAATTttatttttgtattgtgaagatttccgtattaaaaacaatacatggtgttt
gi|8 : gccatcaaaattaGATCCAGTA-T--G--CAAAAAGTGT--AAGTTATTCAACAAGTT-----AACACATCTATGTAAAGAGTG---TGTTGTGTCCAAATGG-GCGACAAACTga
gi|9 : atatGTCCAATC-T--A--CAAAATGT---TAATTATTTCCATATGCA-----AGCACATCTA----AAGTGTG---T-TTATGCCTAAATGGAATAACAAATTTattgtt
blockSeqs : A A TG A A . A . CC TTCTCATATAC T A ATGA A T C A GTA GTGTA TTGCA TGTA . A A
blockSeqs : . AATATG . T ATTG A C C . AAC GTGTA . . . G T
blockSeqs : . T AACC A C C . T CTGTA . . . A C
blockSeqs : . A TCA A C T . A GTGT . . . G A
blockSeqs : T ACT A A A . A GTAT . . . A A
blockSeqs : . T . G C . A TTA . . . G C
blockSeqs : . C C . A GTG . . . A A
blockSeqs : T A . A GTG . . . G A
blockSeqs : . A GTA . . . A A
blockSeqs : . A GT . . . A
blockSeqs : . G GT . . . G
blockSeqs : . A TA . . . G
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : ACTG* A**** GTA** ***
originalCons : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAATNA-AGAATGACGTCATCCGGTCCAATA-T--A--CAAAATGTGTGTAAGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
finalCons : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAACTG-AGAATGACGTCATCCGGTCCAATA-TA----CAAAATGTGTA--AGTATTTCAATATGCA-----AGCACATCCA----AAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATCATACCTCATTTTCAAATTTATGGAACA
Alignments
lowQualScore : 11 1 222 2222 11 66666666666666 2222222222
lowQualScore : 66 5 22 1 1 111 1 3333 00 00000000000000 8 4444444444 1 0 3 44 5555 1 66666 5555 444 1 1
lowQualScore : .. . .. . . ... . .... .. .............. . .......... . . . .. .... . ..... .... ... . .
lowQualScore : 00 5 00 0 0 000 0 5555 33 33333333333333 0 0000000000 9 1 1 22 1111 9 77777 7777 777 6 0
consensus : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAANTG--AGAATGACGTCATCCGGTCCAATA-T--ACAAAATGTGT--AAGTATTTCAATA-----TGCAAGCACATC----CAAAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
Reference ( family-562 ) : NNAAACATTTTCNCGATTTATTAANNGCCCNGTTNTATTCAATANGAACTCGTACCAATATATTAG--T-TG--------ACCCGG-CCCGGTCCAATATAATAACTG--AGAATGACGTCATCCGGTCCAATA-T--ACAAAATGTGT--AAGTATTTCAATA-----TGCAAGCACATC----CAAAGGGTG---TGTTATGCCCAAATGGAACGACAAATTTG
gi|1 : AAATATTTTCCCGATTT-TTAAGTGCCCTGTTTTATTCAATATGAACTCGTACTAATATATTAG--T-TG--------ACCAAG-CCCTGTCCACTATGATGA-TAATAGAATAACGTAA------CCTATA-T-------TTGGGT--AACAATTCCAAGA-----TGCAAACACATC----CAAA-GGTGAACTATTATGCCTTAATGGAACGACATATTTG
gi|10 : agaCTGGTCCAATATAA-AAATG--AAGATGACATTATCCAGTCCAATA-T--TCAAAATATTT--AAGTATTTCAATA-----TGCAATC-CCTC----CAATGGGTG---ttattttatattgtgtttacatttattctgtgtaatg
gi|11 : aGTCATCCGGTCCAATA-T--ACAAAA---------GTATTTCAA-A-----TGCAAGCATATC----CAAAGGTTG---TATTTTGCCTCAATGGAATGACAAATTTG
gi|12 : aagAATAAT--ACAAAATGTGT--GAGTATTTCAATA-----CGGAAACACAT------GAAGG--A---TGCTATGGCCAAATGGTACGAt
gi|13 : ttgAAATGTGT--GAATATTTCAATATGCATTGCAAGCACATC----CAAAGA--G---TATCATTCCT-AATGGAACAACATATTTGtttttttt
gi|14 : TCCAATA-TGTACAAA--GTGT--AAGATTTTCAATA-----TGCAAGCAC---------AAGGATG---GGTTATGCCCAAATGTAACG
gi|15 : CAAAATGT-----AGTATTTCAATA-----TGCAATCACAAT----ATAAGGGTG---TATTACGCCCAAAT
gi|2 : TGCCAATATATTAGAATATG--------GGCCGGTCCCGGTACAG---AATA--TG--A--ATGACTCCATACGGTCCAATA-A--ACAAAAAGTGT-----T-TTTCAGTA-----TTCAAACACATC----CAACTGGTG---TGTTATGCCCTTATGGAACAA
gi|3 : ataaAAACATTTTTA-GATTTATTAATGGTCCAGTTATAT---ATAAGA----GTA----TATATAAG--T-TCTCATATACACCCAA-CCCGACCCAGTATACTATC-A--AGAATATCGTCATCTTATCCAATA-T--ACAAAATGTGTGTAAGCGTTTCAATA-----TGCAAGCACGTC----CAAATGGTG---TATTGTGCCTAAATGAAACGACACATTTGagcatcagttgtaatactcgttttgtatttccaatataatataacaaaactacatgatgttt
gi|4 : gcGGTCTGATATAAAAATTG--GGA-TAACATATTCAGGTTCAATA-T--ACAAAATGTGT--GTGTATTTCAACA-----TGCAGGCACATT----CAAAGGGTG---TGTTATGTCCAAATTGAATGACAAATTTG
gi|5 : atcattatacctcattttcacatttccttctttgttgaaaatagtgtcatcaatatgttacaGG-TCTGGTCAAATGTAA-AACTG--G--ACAACATGATCCGGTTCAATA-T--ACAAAATGTGT--A----TTTCAATA-----TGCAAGCAAAAC----CAATGAGTG---TATTATGCCCAAACGAAATGGCAAATTTGat
gi|6 : ATGACGTCATCCGGTCTAATA-T--AACCAATCTGT--AATTCTTTTTAAA-----TGTAACCACATC----AAACAGGCG---TATTATGCCTAAATCTAACGACACATTTGttactttttgtagtgtttagaaatattcggtataatatatattattt
gi|7 : GG-CCTGGTTCAATATAATAAACC--AAAATGACATTATCATGTCCAATA-T--ACAAAATGTGT--ATGTATTTCAATA-----TGCTAGAATATT----TAAAGGGTG---TGTCACTCCAAGATGGAATAATAAATTttatttttgtattgtgaagatttccgtattaaaaacaatacatggtgttt
gi|8 : gccatcaaaattaGATCCAGTA-T--GCAAAAAGTGT--AAGTTATTCAACA-----AGTTAACACATCTATGTAAAGAGTG---TGTTGTGTCCAAATGG-GCGACAAACTga
gi|9 : atatGTCCAATC-T--ACAAAATGT-T--AATTATTTCCATA-----TGCAAGCACATC----TAAAGTGTG---T-TTATGCCTAAATGGAATAACAAATTTattgtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATCATACCTCATTTTCAAATTTATGGAACA