lowQualScore : 4 0 0 0 0
lowQualScore : . . . . .
lowQualScore : 8 9 9 9 9
consensus : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
Reference ( gi|29 ) : AGCTGCTTCGCTGACAGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|31 : AGCTGCTTCACTGACGGAG-ATTAT-CGT-T-AAATTTCCGAT
gi|7 : AGCTGCTTCGCTGACAGAA-ATGAT-CGT-A-ATGTTTCTGAT
gi|45 : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATtaaat
gi|23 : AGCTGCTTCGCTGACAGGT-ATTGT-CGT-A-AAGTTTCCAAT
gi|34 : AGCTACTCCGCTGAC-GAA-ATTAT-CGT-A-AATTTTCCGATt
gi|4 : AGCTGCTTCGATAACGGAA-ATTAT-CGT-A-AATTTTCCG
gi|16 : AGCGACTTCGTTGAAGGAA-ATTAT-CGT-A-AAATTTCCGActtcagtc
gi|44 : AGCTGCTTTGCTGACGGAA-ATTAT-CCT-A-AAATTTataa
gi|21 : AGCAGCTATGCTGGCAGAA-ATTAT-CGT-A-ACATTTCCGAT
gi|43 : AGCTACTTCGCTGAT-GAA-ACTAT-CGT-A-AAATTTCCta
gi|28 : AGCTGTCCTGCTGACAGAA-ATTAT-CAT-A-AAACTTCCAAT
gi|33 : AGCTGCTTCGATGACAGAG-ATTAT-CAT-A-AAAAATCCGAt
gi|35 : tAGCTGATTCGCTGACGGAA-ATTAT-CGT-A-ATATGTTCG
gi|30 : tAGCTGCTTCAGTGACAGAA-ATTTT-CAT-A-AAATTTC
gi|41 : tAGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCGtaa
gi|40 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCG
gi|46 : AGCTGCTTCGCTGACGGAA-ATTAA-CGT-C-AAAT
gi|10 : AGCTGCTTGGCTGACGGAA-ATTAT-CAT-A-AAA
gi|24 : GCTGCTTCGCTGATGGAG-ATTAT-CGT-A-AAATTTCCGATcgttctatttaa
gi|32 : GCTGTCTTGCTAACAGAA-ATTAT-CGT-A-AAATTTCCGATtc
gi|3 : GCTGCTACGTTGATGGAA-ATTAT-CGT-A-AAATTTCCGATt
gi|12 : GCTGCTTCGCTCACGGAA-ATCAT-CGT-A-CAATTTCTGATtaaataa
gi|6 : GTTGCTTCGCTGGTGGGGGATTAT-CGT-A-AAATTTCCGATtcagt
gi|22 : GCTGCTTAGCTGACAGAA-ATTAG-CAT-A-TAACTTCTGATtcaat
gi|8 : GCTGTTTCGCTGAAGGAA-ATAAT-CGT-AAAAATATCCGATtca
gi|15 : GCTACTTCGTTGGCGGAA-ATTAT-CGTAA-AAATGTCCCATtcagt
gi|36 : GCTACTCTGCTGACGGAA-ACTAT-CGT-A-ACATTATCGATtca
gi|37 : GCTGCTCATCTGATGGAA-ATTAG-CAT-A-AAATTTCTGAT
gi|9 : GCTGTTTAGCCGACGGAA-ATTATACG--A-TAATTTCCGAT
gi|38 : GCTGCTTCGTTGATGGTG-ATTAT-CAT-A-AGATTTCtcaatt
gi|1 : GCTGCCCAGCTGATGAAA-ATTTT-CAT-A-AAATTGCAGATaaa
gi|2 : GCTTTTCCGCTGACGAAA-ATTAT-TAT-T-GACTTTCTGATtcaatcatat
gi|5 : CTGCTTCGCTGACGGTA-ATTGT-CGT-A-AAATTTCCTATtcaatcat
gi|39 : CTGCTTTGCTGACGGAA-ATTAT-CGT-A-AATTTTCtcaatag
gi|17 : CTGCTTCGCTTACGGAA-ATAAG-CGT-A-AAATTTCCGAttat
gi|27 : aCTGCTCCACTGACGGAA-ATTAT-CGT-A-ACA-TTCCGATatcaa
gi|11 : TGCCTCGCTGACGGAA-ATCAT-CGT-A-CAATTTCCGtcct
gi|13 : TGTTTCGATGACGGAA-ATTAA-CGT-A-AGAATACCGATtttcaatcg
gi|20 : tGCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatc
gi|14 : cgGCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaa
gi|26 : cgCACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtcaat
gi|25 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtcaatcgta
gi|19 : GCTGACGGAA-ATTGT-CGT-G-AAATTTCCGATtcaatcgta
gi|18 : aCTGATGGAA-ATTAT-CAT-A-AAATTTCAGATacaatcgtat
gi|9 : cccaaCGGAA-ATTAT-CGT-A-TAATTTCCGtcaatcgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|42 ): AGCTACTTGCTAGAATGATAGTAATTATCATAAGATT
Alignments
lowQualScore : 0 0 0 0
lowQualScore : . . . .
lowQualScore : 9 9 9 9
consensus : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
Reference ( family-560 ) : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|1 : GCTGCCCAGCTGATGAAA-ATTTT-CAT-A-AAATTGCAGAT
gi|10 : AGCTGCTTGGCTGACGGAA-ATTAT-CAT-A-AAAtcaatcatat
gi|11 : TGCCTCGCTGACGGAA-ATCAT-CGT-A-CAATTTCCGcgttctatttaa
gi|12 : GCTGCTTCGCTCACGGAA-ATCAT-CGT-A-CAATTTCTGATtttcaatcg
gi|13 : TGTTTCGATGACGGAA-ATTAA-CGT-A-AGAATACCGATtcagt
gi|14 : tGCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatc
gi|15 : cgGCTACTTCGTTGGCGGAA-ATTAT-CGTAA-AAATGTCCCATtcaat
gi|16 : AGCGACTTCGTTGAAGGAA-ATTAT-CGT-A-AAATTTCCGAtca
gi|17 : CTGCTTCGCTTACGGAA-ATAAG-CGT-A-AAATTTCCGAataa
gi|18 : aCTGATGGAA-ATTAT-CAT-A-AAATTTCAGATatcaa
gi|19 : cccaaGCTGACGGAA-ATTGT-CGT-G-AAATTTCCGATtcaatcgt
gi|2 : aGCTTTTCCGCTGACGAAA-ATTAT-TAT-T-GACTTTCTGATacaatcgtat
gi|20 : GCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatcat
gi|21 : cgAGCAGCTATGCTGGCAGAA-ATTAT-CGT-A-ACATTTCCGATtcaa
gi|22 : GCTGCTTAGCTGACAGAA-ATTAG-CAT-A-TAACTTCTGATta
gi|23 : AGCTGCTTCGCTGACAGGT-ATTGT-CGT-A-AAGTTTCCAATtca
gi|24 : GCTGCTTCGCTGATGGAG-ATTAT-CGT-A-AAATTTCCGATt
gi|25 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtc
gi|26 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtcaatcgta
gi|27 : CTGCTCCACTGACGGAA-ATTAT-CGT-A-ACA-TTCCGATtcaatcgta
gi|28 : AGCTGTCCTGCTGACAGAA-ATTAT-CAT-A-AAACTTCCAATtcct
gi|29 : AGCTGCTTCGCTGACAGAA-ATTAT-CGT-A-AAATTTCCGATt
gi|3 : GCTGCTACGTTGATGGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|30 : AGCTGCTTCAGTGACAGAA-ATTTT-CAT-A-AAATTTCtaaataa
gi|31 : tAGCTGCTTCACTGACGGAG-ATTAT-CGT-T-AAATTTCCGATtaa
gi|32 : GCTGTCTTGCTAACAGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|33 : AGCTGCTTCGATGACAGAG-ATTAT-CAT-A-AAAAATCCGAt
gi|34 : tAGCTACTCCGCTGACG-AA-ATTAT-CGT-A-AATTTTCCGAT
gi|35 : AGCTGATTCGCTGACGGAA-ATTAT-CGT-A-ATATGTTCG
gi|36 : tGCTACTCTGCTGACGGAA-ACTAT-CGT-A-ACATTATCGAT
gi|37 : GCTGCTCATCTGATGGAA-ATTAG-CAT-A-AAATTTCTGAT
gi|38 : GCTGCTTCGTTGATGGTG-ATTAT-CAT-A-AGATTTC
gi|39 : CTGCTTTGCTGACGGAA-ATTAT-CGT-A-AATTTTCaaa
gi|4 : AGCTGCTTCGATAACGGAA-ATTAT-CGT-A-AATTTTCCGttat
gi|40 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCGcttcagtc
gi|41 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCG
gi|43 : AGCTACTTCGCTGATG-AA-ACTAT-CGT-A-AAATTTCC
gi|44 : AGCTGCTTTGCTGACGGAA-ATTAT-CCT-A-AAATTT
gi|45 : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAAT
gi|46 : AGCTGCTTCGCTGACGGAA-ATTAA-CGT-C-AAAT
gi|5 : CTGCTTCGCTGACGGTA-ATTGT-CGT-A-AAATTTCCTAT
gi|6 : GTTGCTTCGCTGGTGGGGGATTAT-CGT-A-AAATTTCCGATtcaatag
gi|7 : AGCTGCTTCGCTGACAGAA-ATGAT-CGT-A-ATGTTTCTGATtcaat
gi|8 : GCTGTTTCGCTGAAGGAA-ATAAT-CGT-AAAAATATCCGATtaaat
gi|9 : GCTGTTTAGCCGACGGAA-ATTATACG--A-TAATTTCCGATtcagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|42 ): AGCTACTTGCTAGAATGATAGTAATTATCATAAGATT
Alignments
lowQualScore : 0 0 0 0
lowQualScore : . . . .
lowQualScore : 9 9 9 9
consensus : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
Reference ( family-560 ) : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|1 : GCTGCCCAGCTGATGAAA-ATTTT-CAT-A-AAATTGCAGAT
gi|10 : AGCTGCTTGGCTGACGGAA-ATTAT-CAT-A-AAAtcaatcatat
gi|11 : TGCCTCGCTGACGGAA-ATCAT-CGT-A-CAATTTCCGcgttctatttaa
gi|12 : GCTGCTTCGCTCACGGAA-ATCAT-CGT-A-CAATTTCTGATtttcaatcg
gi|13 : TGTTTCGATGACGGAA-ATTAA-CGT-A-AGAATACCGATtcagt
gi|14 : tGCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatc
gi|15 : cgGCTACTTCGTTGGCGGAA-ATTAT-CGTAA-AAATGTCCCATtcaat
gi|16 : AGCGACTTCGTTGAAGGAA-ATTAT-CGT-A-AAATTTCCGAtca
gi|17 : CTGCTTCGCTTACGGAA-ATAAG-CGT-A-AAATTTCCGAataa
gi|18 : aCTGATGGAA-ATTAT-CAT-A-AAATTTCAGATatcaa
gi|19 : cccaaGCTGACGGAA-ATTGT-CGT-G-AAATTTCCGATtcaatcgt
gi|2 : aGCTTTTCCGCTGACGAAA-ATTAT-TAT-T-GACTTTCTGATacaatcgtat
gi|20 : GCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatcat
gi|21 : cgAGCAGCTATGCTGGCAGAA-ATTAT-CGT-A-ACATTTCCGATtcaa
gi|22 : GCTGCTTAGCTGACAGAA-ATTAG-CAT-A-TAACTTCTGATta
gi|23 : AGCTGCTTCGCTGACAGGT-ATTGT-CGT-A-AAGTTTCCAATtca
gi|24 : GCTGCTTCGCTGATGGAG-ATTAT-CGT-A-AAATTTCCGATt
gi|25 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtc
gi|26 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtcaatcgta
gi|27 : CTGCTCCACTGACGGAA-ATTAT-CGT-A-ACA-TTCCGATtcaatcgta
gi|28 : AGCTGTCCTGCTGACAGAA-ATTAT-CAT-A-AAACTTCCAATtcct
gi|29 : AGCTGCTTCGCTGACAGAA-ATTAT-CGT-A-AAATTTCCGATt
gi|3 : GCTGCTACGTTGATGGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|30 : AGCTGCTTCAGTGACAGAA-ATTTT-CAT-A-AAATTTCtaaataa
gi|31 : tAGCTGCTTCACTGACGGAG-ATTAT-CGT-T-AAATTTCCGATtaa
gi|32 : GCTGTCTTGCTAACAGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|33 : AGCTGCTTCGATGACAGAG-ATTAT-CAT-A-AAAAATCCGAt
gi|34 : tAGCTACTCCGCTGACG-AA-ATTAT-CGT-A-AATTTTCCGAT
gi|35 : AGCTGATTCGCTGACGGAA-ATTAT-CGT-A-ATATGTTCG
gi|36 : tGCTACTCTGCTGACGGAA-ACTAT-CGT-A-ACATTATCGAT
gi|37 : GCTGCTCATCTGATGGAA-ATTAG-CAT-A-AAATTTCTGAT
gi|38 : GCTGCTTCGTTGATGGTG-ATTAT-CAT-A-AGATTTC
gi|39 : CTGCTTTGCTGACGGAA-ATTAT-CGT-A-AATTTTCaaa
gi|4 : AGCTGCTTCGATAACGGAA-ATTAT-CGT-A-AATTTTCCGttat
gi|40 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCGcttcagtc
gi|41 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCG
gi|43 : AGCTACTTCGCTGATG-AA-ACTAT-CGT-A-AAATTTCC
gi|44 : AGCTGCTTTGCTGACGGAA-ATTAT-CCT-A-AAATTT
gi|45 : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAAT
gi|46 : AGCTGCTTCGCTGACGGAA-ATTAA-CGT-C-AAAT
gi|5 : CTGCTTCGCTGACGGTA-ATTGT-CGT-A-AAATTTCCTAT
gi|6 : GTTGCTTCGCTGGTGGGGGATTAT-CGT-A-AAATTTCCGATtcaatag
gi|7 : AGCTGCTTCGCTGACAGAA-ATGAT-CGT-A-ATGTTTCTGATtcaat
gi|8 : GCTGTTTCGCTGAAGGAA-ATAAT-CGT-AAAAATATCCGATtaaat
gi|9 : GCTGTTTAGCCGACGGAA-ATTATACG--A-TAATTTCCGATtcagt
blockSeqCons :
originalCons : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
finalCons : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|42 ): AGCTACTTGCTAGAATGATAGTAATTATCATAAGATT
Alignments
lowQualScore : 0 0 0 0
lowQualScore : . . . .
lowQualScore : 9 9 9 9
consensus : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
Reference ( family-560 ) : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|1 : GCTGCCCAGCTGATGAAA-ATTTT-CAT-A-AAATTGCAGAT
gi|10 : AGCTGCTTGGCTGACGGAA-ATTAT-CAT-A-AAAtcaatcatat
gi|11 : TGCCTCGCTGACGGAA-ATCAT-CGT-A-CAATTTCCGcgttctatttaa
gi|12 : GCTGCTTCGCTCACGGAA-ATCAT-CGT-A-CAATTTCTGATtttcaatcg
gi|13 : TGTTTCGATGACGGAA-ATTAA-CGT-A-AGAATACCGATtcagt
gi|14 : tGCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatc
gi|15 : cgGCTACTTCGTTGGCGGAA-ATTAT-CGTAA-AAATGTCCCATtcaat
gi|16 : AGCGACTTCGTTGAAGGAA-ATTAT-CGT-A-AAATTTCCGAtca
gi|17 : CTGCTTCGCTTACGGAA-ATAAG-CGT-A-AAATTTCCGAataa
gi|18 : aCTGATGGAA-ATTAT-CAT-A-AAATTTCAGATatcaa
gi|19 : cccaaGCTGACGGAA-ATTGT-CGT-G-AAATTTCCGATtcaatcgt
gi|2 : aGCTTTTCCGCTGACGAAA-ATTAT-TAT-T-GACTTTCTGATacaatcgtat
gi|20 : GCTTCGCTAATGGAA-ATTAT-TGT-A-AAATTTCCAATtcaatcat
gi|21 : cgAGCAGCTATGCTGGCAGAA-ATTAT-CGT-A-ACATTTCCGATtcaa
gi|22 : GCTGCTTAGCTGACAGAA-ATTAG-CAT-A-TAACTTCTGATta
gi|23 : AGCTGCTTCGCTGACAGGT-ATTGT-CGT-A-AAGTTTCCAATtca
gi|24 : GCTGCTTCGCTGATGGAG-ATTAT-CGT-A-AAATTTCCGATt
gi|25 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtc
gi|26 : CACTGACGGAA-ACTGT-CGT-A-AAATTTCCGATtcaatcgta
gi|27 : CTGCTCCACTGACGGAA-ATTAT-CGT-A-ACA-TTCCGATtcaatcgta
gi|28 : AGCTGTCCTGCTGACAGAA-ATTAT-CAT-A-AAACTTCCAATtcct
gi|29 : AGCTGCTTCGCTGACAGAA-ATTAT-CGT-A-AAATTTCCGATt
gi|3 : GCTGCTACGTTGATGGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|30 : AGCTGCTTCAGTGACAGAA-ATTTT-CAT-A-AAATTTCtaaataa
gi|31 : tAGCTGCTTCACTGACGGAG-ATTAT-CGT-T-AAATTTCCGATtaa
gi|32 : GCTGTCTTGCTAACAGAA-ATTAT-CGT-A-AAATTTCCGAT
gi|33 : AGCTGCTTCGATGACAGAG-ATTAT-CAT-A-AAAAATCCGAt
gi|34 : tAGCTACTCCGCTGACG-AA-ATTAT-CGT-A-AATTTTCCGAT
gi|35 : AGCTGATTCGCTGACGGAA-ATTAT-CGT-A-ATATGTTCG
gi|36 : tGCTACTCTGCTGACGGAA-ACTAT-CGT-A-ACATTATCGAT
gi|37 : GCTGCTCATCTGATGGAA-ATTAG-CAT-A-AAATTTCTGAT
gi|38 : GCTGCTTCGTTGATGGTG-ATTAT-CAT-A-AGATTTC
gi|39 : CTGCTTTGCTGACGGAA-ATTAT-CGT-A-AATTTTCaaa
gi|4 : AGCTGCTTCGATAACGGAA-ATTAT-CGT-A-AATTTTCCGttat
gi|40 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCGcttcagtc
gi|41 : AGCTGCTCTGCTGACGGAA-CTTAT-TGT-A-AAATATCCG
gi|43 : AGCTACTTCGCTGATG-AA-ACTAT-CGT-A-AAATTTCC
gi|44 : AGCTGCTTTGCTGACGGAA-ATTAT-CCT-A-AAATTT
gi|45 : AGCTGCTTCGCTGACGGAA-ATTAT-CGT-A-AAAT
gi|46 : AGCTGCTTCGCTGACGGAA-ATTAA-CGT-C-AAAT
gi|5 : CTGCTTCGCTGACGGTA-ATTGT-CGT-A-AAATTTCCTAT
gi|6 : GTTGCTTCGCTGGTGGGGGATTAT-CGT-A-AAATTTCCGATtcaatag
gi|7 : AGCTGCTTCGCTGACAGAA-ATGAT-CGT-A-ATGTTTCTGATtcaat
gi|8 : GCTGTTTCGCTGAAGGAA-ATAAT-CGT-AAAAATATCCGATtaaat
gi|9 : GCTGTTTAGCCGACGGAA-ATTATACG--A-TAATTTCCGATtcagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|42 ): AGCTACTTGCTAGAATGATAGTAATTATCATAAGATT