lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 22 1 333 55555 22 4444 33333 222 1 11 4444444444444 777 66666666 222 11 1 55555555 111 1 2 111 333 22 11111111111111111111111111111111111 77777777777777777 33333 3333 33333333 11111 1 2222 11 2 222 6666666 44444 2222 1 1111 44444444444444444444444444444 1 222 888888888 22222 1 11 44444444444444444 2222 2222222 1 111 111111111111 11 1 111111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 1 11111 777777777777777777777777777777 55555555 444 66666666666666666666666 1 33333333333333333
lowQualScore : 4 5 88 4 2 6 5 11 7 4 2 555 2 2 00000 4 22 2 3333 3 2 444 3 4 44444 4 111 44 7 88 9999999999999 000 3 77777777 4 111 2 99 4 3 6 4 77 7 7 6 66666666 888 5 4 0 3 333 4 3 6 000 77 6 2 44 3 4 3 6 55555555555555555555555555555555555 4 77777777777777777 66666 6 9999 88 6666 66 3 3 77 3 2 00000000 11111 1 1 5 1 3333 88 0 2 111 5555555 4 1 00000 3 8888 1 0 4444 66666666666666666666666666666 0 5 888 88 666666666 3 66666 5 5 6 44 55555555555555555 4 66 0000 3 4 66 0000000 1 2 333 777777777777 55 99 3 0 4 222222 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 2 999 0 66 4 777 88 55 6 8 66 3 6 0 8888 3 44444 3 6 666 3 000000000000000000000000000000 3 55 11111111 3 6 2 7777 3 222 1 55555555555555555555555 4 0 0 55 1 0 00000000000000000 1 6 0
lowQualScore : . . .. . . . . .. . . . ... . . ..... . .. . .... . . ... . . ..... . ... .. . .. ............. ... . ........ . ... . .. . . . . .. . . . ........ ... . . . . ... . . . ... .. . . .. . . . . ................................... . ................. ..... . .... .. .... .. . . .. . . ........ ..... . . . . .... .. . . ... ....... . . ..... . .... . . .... ............................. . . ... .. ......... . ..... . . . .. ................. . .. .... . . .. ....... . . ... ............ .. .. . . . ...... . .......................................................................................................................................................... . . ... . .. . ... .. .. . . .. . . . .... . ..... . . ... . .............................. . .. ........ . . . .... . ... . ....................... . . . .. . . ................. . . .
lowQualScore : 0 5 55 0 5 0 0 00 0 0 5 000 5 5 00000 0 55 5 0000 0 5 555 0 0 00000 0 000 77 0 55 5555555555555 000 0 55555555 0 555 5 55 0 0 0 0 00 3 3 0 00000000 555 5 0 0 0 000 0 0 0 000 00 0 5 00 0 0 0 0 33333333333333333333333333333333333 7 77777777777777777 00000 7 0000 00 5555 00 0 0 00 0 5 55555555 33333 0 0 3 0 5555 55 0 5 555 0000000 0 0 33333 7 3333 0 0 8888 88888888888888888888888888888 0 0 222 00 777777777 5 33333 5 0 8 22 00000000000000000 0 99 6666 7 4 11 4444444 7 2 666 777777777777 11 22 9 0 4 888888 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 0 888 1 00 0 000 11 55 2 2 77 0 2 7 3333 6 22222 6 7 444 6 555555555555555555555555555555 6 66 22222222 6 5 5 1111 3 888 7 99999999999999999999999 2 9 4 66 0 1 99999999999999999 7 7 7
consensus : NTCTAATCNCCAATGGGAGGAAATTAAAGAATNTGAATTNAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATGAATGACATCCAATGCAAATNTGTTCNGGTGCAGCGTTATTCTTNTTNTTCATTTGNCAAGTNCTTTGGTGGACGGTTAAACTGNATTTAAANTTNCGAATNTTTTNCCGCGNTAACATTNTCTCNGAGTTCCGNATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGNAAAAGATCGAAATTTCTATNATTATACACGTTTTNTTTNTACATGAACAGTNANGCCGCNCNNACTTTTCAATTACATGTAT-TACCACAGTGGT-A------ACACATGTAAAGCGATGANNNTGGTGTTCAGGGGTGCTCTGTTCCTTCGAANCCTANCCTTTGCATTGCCNNCGTGCACNTGNGCCGTCTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATNATTTTCAAAANNCTCGTTCGTCCGCNTGTNATTTGNANTCACNAGATAAGTGGAAAACTAA-------TT-----TGCAG------CTGCTCGTTNCACTATTATACAA-------TACGGGA-GAGTTCATGAAATAATATTTATG-A-CGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACNNTATAGATTGGAATNNTACGTCNATTTCTNTTTTCACTGCNNCATGGNTTTAACGTATACANATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATACGCCGAAG-AACGTATTAATTTACTTGTATATTGGCCAAAACACTTTATAAATGTTATAAANTTTAAATTTTTATATTTAAGTGCAANGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAATTT---N-TATGCCANACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACAGCTGATCTTTCTAGCTGTCAAC------TA-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGT-------------NCATTGAC--AAA---AGCTGTCCGTTTTTA-ATATAAAC--ACA---ANNGTAGACAGAAGCCAATACA-AGTCGTCGATGGGGGAAATGGNTTTTCTN-CAACGACATCTAAGTA-AC------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGC--AAC--A-AAAT-C---TC--GN--AACACGT-TAAAATTTCC-GGGA---T---CG-C-ATCG--T-T--CA--T--TTTG-ATCGATATTGTGAAAAT--GTTTGGGTT-CTGGGAC---AAAT-CAGC--GTAAGTAAACAAT-ACTGCGATATAAGAATACTTACTACAAAT--CCNAAATNTCNTCTTTCTACTT---G-AAAT-NT--------A--------T--------TG-AGCGATAACAACAA---A----A-CNTTTCTTG----TTTTC-TTA--CAGCAACTGACAA-----ATC---G-----C-----CGTACAGATCNGCAACTTCC-GCTTTTCAAGACTGTA--CGCTCCGACN-CTGTGATTATGG-AGTACCGACACAAAATGTCAA
Reference ( gi|1 ) : TTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATATATATTCACGCAAATCAGCAAGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCAGTACATTAAACAGCTTCTCCATTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGTGTT---CTTGTTGTT-----GTCAAGTG-TTTGGTGAATGGTTAAACTACATTTAAAA--ACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCTGTATGTTGTTTAGAACGGTGTCCTCAGAACTTCAACAGTTGATTGTATACTTAATTGCATATTAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCTGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATCTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATTGTGTACATGTGCTGTTTACACTGCTTCATTGTTTTGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGTGCTGATG--TTTCAAAAATCTTGTTCATCCGCCTGTT-TTTAAAATTACAAGACAAGT-------TAA-------TT-----TGCA-------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACTGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTATATAG-TCGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATCAACCTTTTTAATTT---G-TATGCCACACAA----TAGTTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCACATTCAATACATTGACACTGCTGATCTTTCTAGCTGTCAACATTAACTAAGCTGTGCACTTTTCAAAGTGAGAATAGGCAACTAAGTGTACAGTTGTGAAGTGAAGGAT-------------TCACTGAC--AAC---AGCTGTCTGTTTTTA-ATATAAAC--ACA---ACTGTGGACACAAGCCAATACA-CATCGTTTATGGGGGGAATGGATTTTCTT-TAATGACATCTATGTA-AC------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGC--AAC--A-AA---C---T---GT--AACGAGT-TAAAATTTCC-GGGA---T---CG-C-ATTGAATTTACCA--T--TTTG-ATCGATATTATGAAAAT--ATTTGGAGT-CTGGGAC---AAAC-TAGC--ATAAGTGAACCAC-ACTGTGATGTAAAAACACTTACTACATAT--TCGAAATTTCTTCTTTCTACTT---G-AAAT-TT--------A--------T--------TG-AGCGATAACAACAA---G----A-CTTTTCTTG----TTTTC-TTAT-TAGCAACTGATAA-----A-----G-----C-----CGTGCAGATCTGCAACTTCT-GCTTTTCAAGACAATA--CATTCTGATC-CTGTGATTATGA-AGTACCGACACAAAATGTCAA
gi|2 : TCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATAAATGACATTCAATGCAAATATGTTCAGATGTAGTGTT---CTTCTTGTT-----GTCAAGTG-TTTAGTGAATGGTTAAACTGCATTTAAAT--ACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAACGGTGTCCTCAGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATTTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATCGTGTACATGGGCTGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTTTGGTGCTGATG--TTTCAAAAATCTCGTTCATCCGCCTGTA-TTTAAAATTACAAGATAAGT-------TAA-------TT-----TGCA-------CTGCTTGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACAGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTTTATAG-TTGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTTCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGG
gi|23 : CTAATCTCCAATGGGAGGAAA-TAAAG--TTTGAATTGAATTGActnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaattttctatgccacacaatagttaaggaaacaatgttcaggttttatataaagcacattcaatccgttgacactgctgatctttctagctgtcaacattaactaagctgtgcatttttcaaagtgagaataggcaactaggtgtacagttgtgaagtgaagggttcactgacaaaagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcatttatgggaggaatggattttcttcaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaattttccaggatcgcattgaatttaccattttgatcaatattatgaaaatgtttggattctgggacaaattagcataagtgaaccatactgtgatgtaagaaaacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttatagcaactgataaagccgtgcatatttgcaacttctgcttttcaagataacacattcagatcctgtgattatgaagtaccaacacaaaatgtcaa
gi|17 : ttaactttagttttgattgtaattcatgtatgtaTGAATAATATCTAATACAAATTTATTCCGGTGCAACGTTATTCTTGTTTTTCATTTGACAAGTTCTTTGGTGGACAGTTAAATTAGATTTAAAGTTTCGAATCTTTTCCCGCAATAACATTGTTTTAGA-----GAAT----TTTAGAGTGGTGTC
gi|13 : GTTTAGAGAGGTGTCCTCGATACTTT--CA-------------TTAATTACATA---ATATGGAAAAAATCGAAATTTCTATAATT---CATGTTTTGTTTA-ACATGAACAGTAACGCCACTCTCACTTTTCAAT---A---ATTTACCACAGTAGTCAGTGCTCACACATGTAAAGCGATGAAAATGG-GTTCAGGGATGTTCTGTTCCTTCGAATCCTACCCTTTGCATTGCCTGCGTGCACTTGTGCCGTCT
gi|2 : TTACATGTGT-TACCACTGTGGT-AT-----ATACATGTAA
gi|11 : tctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatgtatattcacgcaaatcagcacggttagccgctgaatatggtaaaaagggttaagcagcaaatgcgttacattaaacagcttctccaattaggtggataaatgacattcaatgcaaatatgttcagatgtagtgttcttcttgttgtcaagtgtttagtgaatggttaaactgcatttaaatacaaatattttgccaggttaacattttctctgagttccgtatgttgtttagaacggtgtcctcagtacttcaacagttgattgtatacttaattgcataatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagccgcacaaacttttcaaCTGGCACTGATCATTTTCAAAATGCTCGTTCGTCCGTATATTATTTGCATTCACCAGATAAATGGAAAACTAAAGAAAGCTTACAAATGCAA------CTGCTCGTTTCATTATTACAT-----------------GACTTCATCTAATAATATTAGTG-----GTT--ATAAGGT--TAACTTAGTTGTTTTAAGTAAAATAATATAAAT--GAATCCTACGTCGATTTCTCTTTTCACTGTTCTATGGGTTTAACGTATACAAA----ACATCTTTACATGTTCTGGTATCCGCCGGTATATGCCGAAAGAACGTATCAATTagcgatgattttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctatcgtgtacatgggctgtttacactgcttcattgtttcgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtttggtgctgatgtttcaaaaatctcgttcatccgcctgtatttaaaattacaagataagttaatttgcactgcttgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaacagttcaatagtgtatcaatgtagtcattttaagtaaaactttatagttggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgtttcggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaacaatgaaaacgacatttatcgatttggcattaactggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaattttctatgccacacaatagttaaggaaacaatgttcaggttttatataaagcacattcaatccgttgacactgctgatctttctagctgtcaacattaactaagctgtgcatttttcaaagtgagaataggcaactaggtgtacagttgtgaagtgaagggttcactgacaaaagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcatttatgggaggaatggattttcttcaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaattttccaggatcgcattgaatttaccattttgatcaatattatgaaaatgtttggattctgggacaaattagcataagtgaaccatactgtgatgtaagaaaacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttatagcaactgataaagccgtgcatatttgcaacttctgcttttcaagataacacattcagatcctgtgattatgaagtaccaacacaaaatgtcaa
gi|18 : A-------TT-----TGCAGATGTAACTGTTCGTAGCACTATCATACAA-------TATGGGATGAGTTCATGAAATAATATTTATGTACCGGTCCAAAAGTGCATC-ATGT
gi|3 : cgtcttttatctgaaataacatgataaatggaaaactatagaatATGTGTTTACATATTCCGGTGT----------ACGCCGAAG-AACGTATTTATTTA----TATA--GACCAAAACACTTTATAAATGTTATAAAGTTT---TTTTTATATTTAAGTGCAATGTAAATAATGAAAATGA
gi|2 : cAATAATCAACCTTTTTAATTT---TCTATGCCACACAA----TAGTTAAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-GCACATTCAATCCGTTGACACTGCTGATCTTTCTAGCTGTCAACATTAACTAAGCTGTGCATTTTTCAAAGTGAGAATAGGCAACTAGGTGTACAGTTGTGAAGTGAAGGGT-------------TCACTGAC--AAA---AGCTGTCTGTTTTTA-ATATAAAC--ACA---ACTGTGGACACAAGCCAATACA-CATCATTTATGGGAGGAATGGATTTTCTT-CAATGACATCTATGTA-AC------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGC--AAC--A-AA---C---T---GT--AACGAGT-TAAATTTTCC-AGGA---T---CG-C-ATTGAATTTACCA--T--TTTG-ATCAATATTATGAAAAT--GTTTGGATT-CTGGGAC---AAAT-TAGC--ATAAGTGAACCAT-ACTGTGATGTAAGAAAACTTACTACATAT--TCGAAATTTCTTCTTTCTACTT---G-AAAT-TT--------A--------T--------TG-AGCGATAACAACAA---G----A-CTTTTCTTG----TTTTC-TTA--TAGCAACTGATAA-----A-----G-----C-----CGTGCATATTTGCAACTTCT-GCTTTTCAAGATAACA--CATTCAGATC-CTGTGATTATGA-AGTACCAACACAAAATGTCAAtttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaattagtcaacttttttcttttgtatgtcagacaaaatatagcttaggaatataatgttgctcttacaacgttcagaaatcgcattcaatcactgctaatctttctagctgtcagctagccgtgcagtttcgaagtgagaatttgcgtacagtcatgaagtgaggagtacattgaaaaaagctctacgttttaaatataacataataatagacagaaaccaatacaattcgtcgaatgggaaatgattttcctgtaacgacatataagtaacaactgcatatattcacggaaactcctattaatgttcatttggtagcaacaaaaaacgatgaaacacgtaaaatttcccaggatagccacatcattttttgatcgatattatgaaaatgtttgagttctggaacaaaccagcagaagtaaacaatactccattataataatacttactacaaatacgaaatttcttctttctacttgaaaataaattgagcgatctttctgttttcttaaagcaactgattaagcgccgccgtacagatccacaacttccggtttccaagactgtacgctcccacactgtagttactatagtacagatgt
gi|12 : tctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatgtatattcacgcaaatcagcacggttagccgctgaatatggtaaaaagggttaagcagcaaatgcgttacattaaacagcttctccaattaggtggataaatgacattcaatgcaaatatgttcagatgtagtgttcttcttgttgtcaagtgtttagtgaatggttaaactgcatttaaatacaaatattttgccaggttaacattttctctgagttccgtatgttgtttagaacggtgtcctcagtacttcaacagttgattgtatacttaattgcataatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagccgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgattttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctatcgtgtacatgggctgtttacactgcttcattgtttcgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtttggtgctgatgtttcaaaaatctcgttcatccgcctgtatttaaaattacaagataagttaatttgcactgcttgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaacagttcaatagtgtatcaatgtagtcattttaagtaaaactttatagttggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgtttcggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaacaatgaaaacgacatttatcgatttggcattaactggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATAGTCAGTCATTTTAATTTTGTA-TATACCTTACAA----TAGCTTAGGAA-ATACACTTGGCGCTT-T--CAAGTTTGATA----G---AAA-TCGCATTTAAT-CGTTGACACACCTTATCTTTCTAGCTGTCAAC------TA-GCCGTACAGTTT-CAAAGTGAGAATAGGCAACTAGGCGTACAGTCGTGAAGTGAGAAGT-------------ACATTGACAAAACATGAGCTGTCCGCTTTTA-ATATAAAC--ACA---ATACTAGACAGAAGCAAATACA-
gi|3 : tcaTAGTCAACTTTTTTCTTTT---G-TATGTCAGACAAAATATAGCTTAGGAATATA-A--TG-----T-T----GCTCTTACAACGTTCAGAAA-TCGCATTCAAT-------CACTGCTAATCTTTCTAGCTGTCAGC------TA-GCCGTGCAGTTT-CGAAGTGAGAATTTGC--------GTACAGTCATGAAGTGAGGAGT-------------ACATTGAA--AAA---AGCTCTACGTTTTAA-ATATAA-C--ATA---ATAATAGACAGAAACCAATACA-ATTCGTCGA-ATGGGAAATG-ATTTTCCTGTAACGACATATAAGTA-AC------AACTGCATATAT-------------TCACGGAAACTCCTATT-----------A---------AT---GT----TCA-TTTGGTAGC--AAC--A-AAAAACGA-T---GA--AACACGT--AAAATTTCCCAGGA---TAGCCA-C-ATC--ATTT---------TTTG-ATCGATATTATGAAAAT--GTTTGAGTT-CTGGAAC---AAAC-CAGC--AGAAGTAAACAAT-ACTCCATTATAATAATACTTACTACAAAT--ACGAAATTTCTTCTTTCTACTT---GAAAAT-AA--------A--------T--------TG-AGCGAT------------------CTTT--CTG----TTTTC-TTA--AAGCAACTGATTA-----AGCGCCG-----C-----CGTACAGATCCACAACTTCC-GGTTTCCAAGACTGTA--CGCTCCCACA-CTGTAGTTACTATAGTACAGA
gi|8 : catgtgtttacatattccggtgtacgccgaagaacgtatttatttatatagaccaaaacactttataaatgttataaagttttttttatatttaagtgcaatgtaaataatgaaaatgatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaatAA-ACA-A--CG-----TATAACAGGT-----A----C---AGACTTTCATTTAATTCGTTGATATAACTGATATTTTTAACTGTCAAC------TA-GCCGTCTAGTCGATGAAGTG-GAATAGGCAACTAGGAGTACAGTATTGAAGTGAA--------------------TTGAC--AAA---AGCTGTCGGTTTTTA-ATAAAAAC--ACA---AAAATAGGCAGAAACCAATACA-AGTCCTCGAT-AGGGAAGTGATTTTTCTG-CAAAAACATCTAAGTA-AC------AACTGTACATAT-------------TCGTGGAACACC----T-----------A---------AT---TTATCCTCA-TTTGATTGC--AGC--A-AAATCC---TCGAAA--AACGTGT-AAAAA---CA-GGGA---T---CA-C-CATGACGT----A--T--TTTG-ATCGATA---------------------------AC---AAAT-CAGC--GTAAGTAAACAAC-ACTGtgt
gi|4 : ggtcaagtgtttaaaaatactttgcgcctgtATTCAATCCGTTGGTATAACTGATCTTTTTAACTGTCAAC------TA-GCCGTGCAGTCGATAAAGTG-GAATAAGCAACTAAGCGTACAGTATTGAAGTGAAGAATATATAATAATTATTCATTGAT--AAA---AGCTATCCGTTTTTTTATAAAAAC--ACA---AAAATAAGCAGTAGCCAATACA-AGTCCTCGATAGGGA-AATGT-TTTTCTG-CACCAACATCTAAGTA-AC------AACTGCATAAAT-------------T---------------CGTGGAAAACACA---------AT---TTGTCCTCA-TTTGATTGC--AAC--A-AAATCC---TC--GA--AACACGTGTAAAAAT-CA-GGGA---T---C-----------------------TTG-ATCGATATTGTGAAAAT--ATTTCGGTT-CTGAGAC---AAAT-AAGC--GTTAGAAAACAAT-ACTGCGATATAAGATTACATACTACAAAT--CCTAAATATCGTCGTTCTTCTT---G-AAAT-GT--------A--------TAATGAAAATG-AGCGATA--AACAA---AATCCA-CGTTTGTTG----TTTTC-ATA--CAACAACTGACAATTC--ATC---G-----C-----CGTACAGATAAGCAACTTCC-GCTTTTCAc
gi|5 : ttaaatagtcagcctaaatttcgtaggttaggttaggttaggagatatactttgcgcctgtaaataacgtataacaggttcatcattttAACCGTGCAGTCGATAAAGTG-GAATAGACAACTAGGCGTACAGTATTGAAGTGAGGAGT-------------GCATTGAC--AAA---AGCTGTCCGTTTTTA-ATAAAAAC--ACA---AAAATAGGCAGAAACCAATACA-AGTC-TTCAAAAGCGAAATGATTTTTCTG-TACCAACATCTGAGTA-AC------AACTGCATATAT-------------T---------------CGTGGAACATCCA---------ATGTATC---CTAA-TTTGATTGC--AAC--A-AAATCC---TC--GA--AACACGTGTAAAAAT-CA-GGGA---T---CA-CCATTGCGT-----A--T--TTTG-ATCGATATTGTGAAAAT--GTTTCGGTT-CTGAGAC---AAAT-TAGC--ATAAGAAAACAAT-ACTGCGATATAAGATTAATTACTACACAT--CCTAAATATC--GTGAATAATA---A-AAA------------------------------TG-AGCGATAAAAAAAATC-C----A-CGTTTGTTG----TTTTC-ATA--CAGCAACTGACAATTC--ATC---G-----C-----CGTACAGATCAGCAACTTTC-GCTTTTCAATACTGTA--CGCTCCTACA-CTGTGttacagaacgctcccacactatg
gi|6 : atTGAAATGAGGAGT-------------ACATTGAC--AAG---AGCTGTTCTTTTTTT-ATATTAATTAACA----CT-CGGACAGAAACCCATACA-AGATGTTGATGGCAA-AATGATTTTTGTA-TAACGACATTTAAGTT-AC------AACTGCATAAATGCGTGGAAACCTCTA--------------T-----------A---------AT---TTACGCACA-TTTGACAGC--AAC--GGAA---T---TTACGT--AACATGT-GTAAACATCC-GGGAATGC---CA-C-ATCG-------TA--T--TTTG-ATCGATATTGTGAAAAT--GTTTGAGTT-CTGGGACAGGAAACACAGTTAACAAGTTAACAAT-ACTGCGATAT-AAGATACTTATTGAAAAT--CTCAAATTTCTTCTTTCTACTT---G-TAAT-TTTTGACAACA--------T--------TA-AGCGATAAGAACAAAT-G----A-A-TATCAAG----TTTTC-TTA--TAGCAACTGATAA-----A-----G-----CGTCGGCGTACAGATCCGCAACTTCC-GTTTTTTAAGACGGTA--TGCTCga
gi|10 : ATTGTC--AAG---ATCTGCTCGTTTCCA-ATATAAAC--GCACAAACCG---ACAGAAAGCAATACAATATC-TTGATAGCGATA-TAGTTTTTCTA-TAACAATATCTCAGTATATTCGTGGAAACCC-CATAT-------------T---------------T----------------------T---TG---CTCG-TTTGATAGC---ACTTA-AA---TCCAT---GA--AACACGT-ATAAACGTCC-GGGA---A---TG-C---CAGAT----CATGT--TTTT-ATCGATATTGTGAAAAT--GTTTGAGTT-CTGGAAT---AAAC-CAGC--AGAAGTAAACAAT-ACTGCGATATAGGAA----TACTACAAAT--CCGAAATTTCATCTTTCTACTTTACG-ACA--CA--------A--------T--------TG-AACGATAACAACAA---ccgcactgt
gi|7 : TATTTTTA-ATATAAAC--ACT---ATTGTGGACAGAAGCCAATACA-CGTCATCAATGGGGAAAAGGGGTTT-CTT-CAATGGCATCTTT----AC------A----CAT---------------------------------T-----------A---------AT---G----CTCACTTTAATAGC--AAC--A-AAAT-C---C---ATG-AATACAT-TTAATTTTCC-GAGA---T---C-----TTCA---TATCA--T--TTTG-ATTGATATTATGAAAAT--GTTTGGATT-CATCGAC---AAAC-CGGC--AATATTAAACCAT-ACTGTG-------AATATTTGC-ACAAAT--TTAAAATGTCATCTTTCTATTT---G-AAAT-TT--------A--------T--------TG-AGTGATAACAACAAAATG----A-CTTTTACCG----TTTTC-TTA--CAGCAACTGACAA-----A-----GTGTGTC-----CGCACAGATCAGAAACTTCC-GTTTTTCA--------------CTGA-------GATTATGG-AGTACCAACACAAAATGTCAAat
gi|9 : CCAATACA-CGTCGT---CGAAGATAACTAATTTATTT-TAACTTCATAAACATA-AC-------AATGCATGTAT-------------T---------------C-----------AGAAATCCCTAT---TTATGTTCA-TTTCAGAGCAAAAC--A-AT---C---C---GCGAAACACGT-TAAATTTCCC-GGAA---T---CGCC-A-------TATCA--TAGTTTGAATCGATATTGTGAAAATGAA---AGAATGCCGGGAC---AAAT-CAGC--ATAAGTAAA-CACTACTGCGG------------TACTACAAAT--CTTAAGTGTTTTTTATCTACTT---G-AAAT-TTATGACAAAA--------T--------TG-AACGATAACAACAC---ATC--A-CACTTCCTG----TTTCC-TTA--TAGCAACTTACAA-----A-----G-----C-----ctaacagcaataaatcaatgtgcagaa
gi|16 : T-CTGATAC---AAAT-CAGC--GTAAGACAACAAT-ACTGCGATATAAGTTTACTTACTGCAAATCATC--AATTTCGTCTTTCTTC-T---G-AAATGTTTAATGAA-A--------C--------TG-AGCGAT--CAGCAA---AATCCA-CGTTTGTTG----TTTTC-ATA--CAGCAAATGATAATC---ATC---G-----C-----CGTACAGAgtcgccgtataga
gi|15 : ggtAACAAT-ACTTCGATATAAAA-TACTTACTACAAAT--CAGAAATGTCTTCTTTCTGCTA---G-AAAG-CT--------A--------TGAAAAAA-TGAAGCGATAACATCAA---AT---ACCTCTTCTTG----TTTTC-TTA--TAGCAGCTCACAAAGTGTA-----G-----T-----CGCACAAATCCGCAACTTCT-GGTTTACATAACTGTA--Cacag
gi|14 : AATACTTTCTACAAAT--CATAAATCTTGTCTGTCGTCTT---G-AAAT-AT--------ATAATGAATT--------TG-AGCGATA--AACAA---AATCCA-CGTTTGTTT----TTTTT-TTATACAGCAACTTACAA-----ATCGTCG-----C-----CGTACAGATC-ACGACTTCC-GGTTTTGAATACTGTAGGC-TTCCG--CACTGTG---ATGA-AGTATTGAggtcccacactt
gi|22 : acgattagaattg----A-TTTTGCACG----TTTTCCTTA---AGCAACGAACAA-----ATCGTCG-----C-----CATCCAGATCTG-AAATTCT-TCTTattcttatcaa
gi|19 : atatttaagcaattcTCTTGCGCTTTTTC-TTAA--AGCAACTAACAA-----ATCATCG-----C-----CATGCAGATCCGCAACTTCC-CCTT
gi|20 : taaaaaaaaatatcttttagcaattcaCAACAGACAA-----T-----G-----CGTTAGTGTACAGATCAGAAACTTCC-GGCTTTCAAGACTGTA--CGTTTCAACT-CTGTAATTATGG-AATACCAGCACAAAATGTgtgtcgaatgtgctctcccgcattgtacgtacaattacaaactcag
gi|21 : CAACAGACAA-----T-----G-----CGTTGATGTACAGATCAGAAACTTCCCGCTTT-CAAGACTGTA--CGTTTCAACT-CTGTAATTATGG-AATACCAACACAAAATGTtgactaacagcaataaatgaatgcgccaaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): CAGATAGTACAAAATAATTGGTTGATATCTATATTTGAATATTTTATTCAACTGTACAGAAACTGGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 555555555 22 22 222 77777777 2 44444444 2 333 11 88888888888888888888888888888888888888888 999999999999999999 44444 222 2 1 2 2 6666666 2222 2222 11 2222222222 22222222 333333 1 11 1 33333333333333 11111 1111111 1111111 2222222222222222222222222222222222222222222222222222222222222 3333333333333 11 66666666666666666666666666666 66666666666666666666666666666 4444 444444444444
lowQualScore : 1 0 0 7 7 1 1 2 3 4 0 0 1 1 0 0 0 333 666666666 1 44 0 0 11 99 1 0 1 1 77 1 1 1 6 3 1 6 0 0 7 6 333 1 22222222 1 7 1 88 1 1 1 22 7 6 6 6 22222222 333 88 0 0 0 0 1 3 1 222 0 1 1 0 0 0 111 22 0 1 0 44 1 1 4 1 33333333333333333333333333333333333333333 1 111111111111111111 77777 0 2 7 0 0 22 777 22 0 1 1 0 0 22 1 77 3 1 7 66 4 2 0 0 6 7 0 3 1 7 5555555 1 0 8888 1 1111 8 8 11 1111111111 3 0 99999999 8 1 6 4 222222 1 66 1 2 22 2 00000000000000 11111 4 55 222 0 44 5 1111111 4 44 1 1 4 3333333 1 7777777777777777777777777777777777777777777777777777777777777 4 1111111111111 1 22 77 4 00000000000000000000000000000 55 4 55 0 7777 33 0 11 1 1 0 555 3 44 00000000000000000000000000000 3 55 4444 1 3 0 6666 44 66 222222222222 444 444 1 3 0 3 3 1 1 9 2 0 5 0
lowQualScore : . . . . . . . . . . . . . . . . . ... ......... . .. . . .. .. . . . . .. . . . . . . . . . . . ... . ........ . . . .. . . . .. . . . . ........ ... .. . . . . . . . ... . . . . . . ... .. . . . .. . . . . ......................................... . .................. ..... . . . . . .. ... .. . . . . . .. . .. . . . .. . . . . . . . . . . ....... . . .... . .... . . .. .......... . . ........ . . . . ...... . .. . . .. . .............. ..... . .. ... . .. . ....... . .. . . . ....... . ............................................................. . ............. . .. .. . ............................. .. . .. . .... .. . .. . . . ... . .. ............................. . .. .... . . . .... .. .. ............ ... ... . . . . . . . . . . . .
lowQualScore : 0 7 7 3 3 0 0 5 0 0 7 7 0 0 7 7 7 333 000000000 0 33 7 7 77 33 0 7 0 0 33 0 0 0 7 7 0 7 2 7 3 7 333 0 00000000 0 3 0 33 0 0 0 00 3 7 7 7 77777777 000 00 7 7 7 7 0 7 0 777 7 0 0 7 7 7 777 00 7 0 2 00 0 0 2 0 00000000000000000000000000000000000000000 0 222222222222222222 00000 2 5 0 7 7 00 000 00 7 0 0 7 7 00 0 33 3 0 3 88 2 0 0 0 7 3 7 7 0 3 7777777 0 7 5555 0 2222 0 0 00 0000000000 8 6 88888888 0 4 7 0 999999 4 77 4 0 00 2 22222222222222 11111 0 55 555 3 66 7 7777777 0 00 0 0 0 0000000 6 7777777777777777777777777777777777777777777777777777777777777 0 7777777777777 0 99 44 0 33333333333333333333333333333 55 0 00 2 7777 00 5 22 0 0 8 888 3 66 44444444444444444444444444444 3 77 2222 0 6 4 5555 22 99 999999999999 777 777 0 1 2 1 3 4 5 3 2 1 7 4
consensus : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT------TTGTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCA---TAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAA-GAGTTCATGAAATAATATTTATGAAA-CGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCG-AAGTAACGTATTAATTTACTTGTATATTGGCCAAAATAC-TTATAAATGTTATAAACTTTAAATTTTT-------AGTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAATTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------TA-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAAC--ACAANAGTAGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGA-AATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGAAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAACAAA-T--ACNT-TTCTTG----TTTTCT--TA-CAGCAACTGACAA---A-CGTC---G---CC---GTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
Reference ( family-5510 ) : NTCTAATCNCCAATGGGAGGAAATTAAAGAATNTGAATTNAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATGAATGACATCCAATGCAAATNTGTTCNGGTGCAGCGTTATTCTTNTTNTTCATTTGNCAAGTNCTTTGGTGGACGGTTAAACTGNATTTAAANTTNCGAATNTTTTNCCGCGNTAACATTNTCTCNGAGTTCCGNATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCA---TAATGTGNAAAAGATCGAAATTTCTATNATTATACACGTTTTNTTTNTACATGAACAGTNANGCCGCNCNNACTTTTCAATTACATGTAT-TACCACAGTGGT-A------ACACATGTAAAGCGATGANNNTGGTGTTCAGGGGTGCTCTGTTCCTTCGAANCCTANCCTTTGCATTGCCNNCGTGCACNTGNGCCGTCTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATNATTTTCAAAANNCTCGTTCGTCCGCNTGTNATTTGNANTCACNAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTNCACTATTATACAA----TAC----GGGA-GAGTTCATGAAATAATATTTATG--A-CGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACNNTATAGATTGGAATNNTACGTCNATTTCTNTTTTCACTGCNNCATGGNTTTAACGTATACANATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATACGCCG-AAG-AACGTATTAATTTACTTGTATATTGGCCAAAACACTTTATAAATGTTATAAANTTTAAATTTTTATATTTAAGTGCAANGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAATTTN---TATGCCANACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACAGCTGATCTTTCTAGCTGTCAAC------TA-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTN-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAAC--ACAANNGTAGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGA-AATGGNTTTTCTNCAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGNAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAACAAA----ACNT-TTCTTG----TTTTCT--TA-CAGCAACTGACAA---A---TC---G---CC---GTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCGACNCTGTGATTA-TGGAGTACCGACACAAAATGTCAA
gi|1 : TCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATATATATTCACGCAAATCAGCAAGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCAGTACATTAAACAGCTTCTCCATTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGTG---TTCTTGTTG-----TTGTCAAGTG-TTTGGTGAATGGTTAAACTACATTTAAAA--ACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCTGTATGTTGTTTAGAACGGTGTCCTCAGAACTTCAACAGTTGATTGTATACTTAATTGCATATTAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCTGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATCTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATTGTGTACATGTGCTGTTTACACTGCTTCATTGTTTTGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGTGCTGATG--TTTCAAAAATCTTGTTCATCCGCCTGTT-TTTAAAATTACAAGACAAGT-------TA------A-------TT-----TGCA-------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAA-GAGTTCATGAAATAATATTTATGAAA-CTGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTATATAG-TCGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCTGCTGGTATATACTG-AAGTAATGTATTAATTTACTTGTATATTGGCCAAAATAC-TTATAAATGTTATAAACTTTAAATTTTT-------AGTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGG
gi|1 : tAATAATCAACCTTTTTAATTTG---TATGCCACACAA----TAGTTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCACATTCAATACATTGACACTGCTGATCTTTCTAGCTGTCAACATTAACTAAGCTGTGCACTTTTCAAAGTGAGAATAGGCAACTAAGTGTACAGTTGTGAAGTGAAGGATT-------------CACTGACAAC-----AGCTGTCTGTTTTTA-ATATAAAC--ACAACTGTGGACACAAGCCAATACAC-ATCGTTTA-TGGGGGG-AATGGATTTTCTTTAATGACATCTATGTA-AC-------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAA--------C-T--GTAACGAGT-TAAAATTTCC-GGGA---T---CG-C---AT--TGAAT-TTACCAT--TTTGA-TCGATATTATGAAAATATTTGGAGTCTGGGACA--AACTAGCAT----AAGTGAACCACACTGTGATGTAAAAACACTTACTACATATTCGAAATTTCTTCTTTCTACTT---G-A--AAT-TT--------A--------T--------TG-AGCGATAACAACAAG----ACTT-TTCTTG----TTTTCT--TATTAGCAACTGATAA---A--------G---CC---GTGCAGATCTGCAACTTCT-GCTT-T-TCAAGACAATACATTCTGATCCTGTGATTA-TGAAGTACCGACACAAAATGTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaatttgtatgccacacaatagtttaggaaacaatgttcaggttttatataaatcacattcaatacattgacactgctgatctttctagctgtcaacattaactaagctgtgcacttttcaaagtgagaataggcaactaagtgtacagttgtgaagtgaaggattcactgacaacagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcgtttatggggggaatggattttctttaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaaatttccgggatcgcattgaatttaccattttgatcgatattatgaaaatatttggagtctgggacaaactagcataagtgaaccacactgtgatgtaaaaacacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttattagcaactgataaagccgtgcagatctgcaacttctgcttttcaagacaatacattctgatcctgtgattatgaagtaccgacacaaaatgtcaa
gi|10 : ttctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatatatattcacgcaaatcagcaaggttagccgctgaatatggtaaaaagggttaagcagcaaatgcagtacattaaacagcttctccatttaggtggataaatgacattcaatgcaaatatgttccgatgtagtgttcttgttgttgtcaagtgtttggtgaatggttaaactacatttaaaaacaaatattttgccaggttaacattttctctgagttctgtatgttgtttagaacggtgtcctcagaacttcaacagttgattgtatacttaattgcatattaatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagctgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgatcttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctattgtgtacatgtgctgtttacactgcttcattgttttgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtctggtgctgatgtttcaaaaatcttgttcatccgcctgtttttaaaattacaagacaagttaatttgcactgctcgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaactgttcaatagtgtatcaatgtagtcattttaagtaaaactatatagtcggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgttccggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaataatgaaaacgacatttatcgatttggcattaactggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGTCAAG-----ATCTGCTCGTTTCCA-ATATAAAC--GCACAAACCGACAGAAAGCAATACAATATC-TTGA-TAGCG-A-TATAGTTTTTCTATAACAATATCTCAGTATATTCGTGGAAACCCCATATTT-------------T---------------T-----------G-------------------CTCG-TTTGATAGCACTTAAA-----T-C-CATGAAACACGT-ATAAACGTCC-GGGA---A---TG-CCAGAT--CA--T------GT--TTTTA-TCGATATTGTGAAAATGTTTGAGTTCTGGAATA--AACCAGCAG----AAGTAAACAATACTGCGATATAGGAA----TACTACAAATCCGAAATTTCATCTTTCTACTTTACG-A--CAC-A---------A--------T--------TG-AACGATAACAACAAA----
gi|11 : CTGGCACTGATCATTTTCAAAATGCTCGTTCGTCCGTATATTATTTGCATTCACCAGATAAATGGAAAACTA------AAGAAAGCTTACAAATGCAA------CTGCTCGTTTCATTATTACAT------------------GACTTCATCTAATAATATTAGT------GGTT--ATAAGG--TTAACTTAGTTGTTTTAAGTAAAATAATATAAAT--GAATCCTACGTCGATTTCTCTTTTCACTGTTCTATGGGTTTAACGTATACAAA----ACATCTTTACATGTTCTGGTATCCGCCGGTATATGCCGAAAG-AACGTATCAATTt
gi|12 : AATAGTCAGTCATTTTAATTTTGTATATACCTTACAA----TAGCTTAGGAA-ATACACTTGGCGCTT-T--CAAGTTTGATA----G---AAA-TCGCATTTAATC-GTTGACACACCTTATCTTTCTAGCTGTCAAC------TA-GCCGTACAGTTT-CAAAGTGAGAATAGGCAACTAGGCGTACAGTCGTGAAGTGAGAAGTA-------------CATTGACAAAACATGAGCTGTCCGCTTTTA-ATATAAAC--ACAATACTAGACAGAAGCAAATACA
gi|13 : tcaGTTTAGAGAGGTGTCCTCGATACTTT--CA-------------TTAATTACA---TAATATGGAAAAAATCGAAATTTCTATAATT---CATGTTTTGTTTA-ACATGAACAGTAACGCCACTCTCACTTTTCAA-TA-AT---T-TACCACAGTAGTCAGTGCTCACACATGTAAAGCGATGAAAATGG-GTTCAGGGATGTTCTGTTCCTTCGAATCCTACCCTTTGCATTGCCTGCGTGCACTTGTGCCGTCT
gi|14 : GAATACTTTCTACAAATCATAAATCTTGTCTGTCGTCTT---G-A--AAT-AT--------ATAATGAATT--------TG-AGCGATA--AACAAAATCCACGT-TTGTTT----TTTTTTTATA-CAGCAACTTACAA---ATCGTC---G---CC---GTACAGATCA-CGACTTCC-GGTT-T-TGAATACTGTAGGCTTCCGCACTGTG---A-TGAAGTATTGA
gi|15 : acgattagaattAACAATACTTCGATATAA-AATACTTACTACAAATCAGAAATGTCTTCTTTCTGCTA---G-A--AAG-CT--------A--------TGAAAAAA-TGAAGCGATAACATCAAAT---ACCTCTTCTTG----TTTTCT--TA-TAGCAGCTCACAA---AGTGTA---G---TC---GCACAAATCCGCAACTTCT-GGTT-T-ACATAACTGTACGGTCCCACACTattcttatcaa
gi|16 : GGTTCTGATACA--AATCAGCGT----AAGACAACAATACTGCGATATAAGTTTACTTACTGCAAATCATCAATTTCGTCTTTCTTC-T---G-A--AAT-GTTTAATGAAA--------C--------TG-AGCGAT--CAGCAAAATCCACGT-TTGTTG----TTTTCA--TA-CAGCAAATGATAATC-A---TC---G---CC---GTACAGAACAGt
gi|17 : TGAATAATATCTAATACAAATTTATTCCGGTGCAACGTTATTCTTGTTTTTCATTTGACAAGTTCTTTGGTGGACAGTTAAATTAGATTTAAAGTTTCGAATCTTTTCCCGCAATAACATTGTTTTAGA-----GAAT----TTTAGAGTGGTGTC
gi|18 : CGTCTTTTATCTGAAATAACATGATAAATGGAAAACTATAGAATA-------TT-----TGCAGATGTAACTGTTCGTAGCACTATCATACAA----TAT----GGGATGAGTTCATGAAATAATATTTATGT-ACCGGTCCAAAAGTGCATCA
gi|19 : TCTTGCGCTTTTTCT--TA-AAGCAACTAACAA---A---TCATCG---CC---ATGCAGATCCGCAACTTCC-CCTTGTGTC--GAATGTGCTCTCCCGCATTGTtgt
gi|2 : taaaaaaaaatatcttttagcaattcaTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATAAATGACATTCAATGCAAATATGTTCAGATGTAGTGTTCTTCTTG--------TTGTCAAGTG-TTTAGTGAATGGTTAAACTGCATTTAAA--TACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAACGGTGTCCTCAGTACTTCAACAGTTGATTGTATACTTAATTGCA---TAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATTTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATCGTGTACATGGGCTGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTTTGGTGCTGATG--TTTCAAAAATCTCGTTCATCCGCCTGT-ATTTAAAATTACAAGATAAGT-------TA------A-------TT-----TGCA-------CTGCTTGTTACACTATTATACAAAACTTACTACAAGAA-GAGTTCATGAAATAATATTTATGAAA-CAGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTTTATAG-TTGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTTCGGTATCTGCTGGTATATACTG-AAGTAATGTATTAATTTACTTGTATATTGGCCAAAATAC-TTATAAATGTTATAAACTTTAAATTTTT-------AGTGCAAAGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGGacgtacaattacaaactcag
gi|2 : AATAATCAACCTTTTTAATTTTC--TATGCCACACAA----TAGTTAAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-GCACATTCAATCCGTTGACACTGCTGATCTTTCTAGCTGTCAACATTAACTAAGCTGTGCATTTTTCAAAGTGAGAATAGGCAACTAGGTGTACAGTTGTGAAGTGAAGGGTT-------------CACTGACAAA-----AGCTGTCTGTTTTTA-ATATAAAC--ACAACTGTGGACACAAGCCAATACAC-ATCATTTA-TGGGAGG-AATGGATTTTCTTCAATGACATCTATGTA-AC-------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAA--------C-T--GTAACGAGT-TAAATTTTCC-AGGA---T---CG-C---AT--TGAAT-TTACCAT--TTTGA-TCAATATTATGAAAATGTTTGGATTCTGGGACA--AATTAGCAT----AAGTGAACCATACTGTGATGTAAGAAAACTTACTACATATTCGAAATTTCTTCTTTCTACTT---G-A--AAT-TT--------A--------T--------TG-AGCGATAACAACAAG----ACTT-TTCTTG----TTTTCT--TA-TAGCAACTGATAA---A--------G---CC---GTGCATATTTGCAACTTCT-GCTT-T-TCAAGATAACACATTCAGATCCTGTGATTA-TGAAGTACCAACACAAAATGTCAActnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaattttctatgccacacaatagttaaggaaacaatgttcaggttttatataaagcacattcaatccgttgacactgctgatctttctagctgtcaacattaactaagctgtgcatttttcaaagtgagaataggcaactaggtgtacagttgtgaagtgaagggttcactgacaaaagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcatttatgggaggaatggattttcttcaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaattttccaggatcgcattgaatttaccattttgatcaatattatgaaaatgtttggattctgggacaaattagcataagtgaaccatactgtgatgtaagaaaacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttatagcaactgataaagccgtgcatatttgcaacttctgcttttcaagataacacattcagatcctgtgattatgaagtaccaacacaaaatgtcaa
gi|20 : tctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatgtatattcacgcaaatcagcacggttagccgctgaatatggtaaaaagggttaagcagcaaatgcgttacattaaacagcttctccaattaggtggataaatgacattcaatgcaaatatgttcagatgtagtgttcttcttgttgtcaagtgtttagtgaatggttaaactgcatttaaatacaaatattttgccaggttaacattttctctgagttccgtatgttgtttagaacggtgtcctcagtacttcaacagttgattgtatacttaattgcataatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagccgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgattttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctatcgtgtacatgggctgtttacactgcttcattgtttcgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtttggtgctgatgtttcaaaaatctcgttcatccgcctgtatttaaaattacaagataagttaatttgcactgcttgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaacagttcaatagtgtatcaatgtagtcattttaagtaaaactttatagttggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgtttcggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaacaatgaaaacgacatttatcgatttggcattaactggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAACAGACAA---T---GC---G---TTAGTGTACAGATCAGAAACTTCC-GGCT-T-TCAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAGCACAAAATGT
gi|21 : CAACAGACAATGCG---TT---G---AT---GTACAGATCAGAAACTTCCCGCTT-T--CAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAACACAAAATGTtgactaacagcaataaatgaatgcgccaaa
gi|22 : ----TTTCCT--TA--AGCAACGAACAA---ATCGTC---G---CC---ATCCAGATCTG-AAATTCT-TCTT-tgactaacagcaataaatgaatgtgcc
gi|23 : atatttaagcaattcattttgcacgtCTAATCTCCAATGGGAGGAAA-TAAAG--TTTGAATTGAATTGA
gi|3 : ttaactttagttttgattgtaattcatgtatgtaATGTGTTTACATATTCCGGTGT----------ACGCCG-AAG-AACGTATTTATTTA----TATA--GACCAAAACACTTTATAAATGTTATAAAGTTT---TTTTTATATTTAAGTGCAATGTAAATAATGAAAATGA
gi|3 : cTAGTCAACTTTTTTCTTTTG---TATGTCAGACAAAATATAGCTTAGGAATATA-A--TG-----T-T----GCTCTTACAACGTTCAGAAA-TCGCATTCAATC-------ACTGCTAATCTTTCTAGCTGTCAGC------TA-GCCGTGCAGTTT-CGAAGTGAGAAT------TT--GCGTACAGTCATGAAGTGAGGAGTA-------------CATTGAAAAA-----AGCTCTACGTTTTAA-ATATAA-C--ATAATAATAGACAGAAACCAATACAA-TTCGTCGAATGGG--A-AATGATTTTCCTGTAACGACATATAAGTA-AC-------AACTGCATATAT-------------TCACGGAAACTCCTATT-----------A---------AT---GT----TCA-TTTGGTAGCAACAAAAAACGAT------GAAACACGT--AAAATTTCCCAGGA---TAGCCA-C---AT--CA--T-T-----T--TTTGA-TCGATATTATGAAAATGTTTGAGTTCTGGAACA--AACCAGCAG----AAGTAAACAATACTCCATTATAATAATACTTACTACAAATACGAAATTTCTTCTTTCTACTT---GAA--AAT-AA--------A--------T--------TG-AGCGAT---------------CT-TTC-TG----TTTTCT--TA-AAGCAACTGATTA---AGCGCC---G---CC---GTACAGATCCACAACTTCC-GGTT-T-CCAAGACTGTACGCTCCCACACTGTAGTTACTATAGTACAGAtttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaattagtcaacttttttcttttgtatgtcagacaaaatatagcttaggaatataatgttgctcttacaacgttcagaaatcgcattcaatcactgctaatctttctagctgtcagctagccgtgcagtttcgaagtgagaatttgcgtacagtcatgaagtgaggagtacattgaaaaaagctctacgttttaaatataacataataatagacagaaaccaatacaattcgtcgaatgggaaatgattttcctgtaacgacatataagtaacaactgcatatattcacggaaactcctattaatgttcatttggtagcaacaaaaaacgatgaaacacgtaaaatttcccaggatagccacatcattttttgatcgatattatgaaaatgtttgagttctggaacaaaccagcagaagtaaacaatactccattataataatacttactacaaatacgaaatttcttctttctacttgaaaataaattgagcgatctttctgttttcttaaagcaactgattaagcgccgccgtacagatccacaacttccggtttccaagactgtacgctcccacactgtagttactatagtacagatgt
gi|4 : catgtgtttacatattccggtgtacgccgaagaacgtatttatttatatagaccaaaacactttataaatgttataaagttttttttatatttaagtgcaatgtaaataatgaaaatgatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaatATTCAATCCGTTGGTATAACTGATCTTTTTAACTGTCAAC------TA-GCCGTGCAGTCGATAAAGTG-GAATAAGCAACTAAGCGTACAGTATTGAAGTGAAGAATATATAATAATTATTCATTGATAAA-----AGCTATCCGTTTTTTTATAAAAAC--ACAAAAATAAGCAGTAGCCAATACAA-GTCCTCGA-TAGGG-A-AATG-TTTTTCTGCACCAACATCTAAGTA-AC-------AACTGCATAAAT-------------T---------------CGTGGAAAACACA---------AT---TTGTCCTCA-TTTGATTGCAACAAAA-----TCC-T-CGAAACACGTGTAAAA-ATCA-GGGA---T---C--------------------------TTGA-TCGATATTGTGAAAATATTTCGGTTCTGAGACA--AATAAGCGT----TAGAAAACAATACTGCGATATAAGATTACATACTACAAATCCTAAATATCGTCGTTCTTCTT---G-A--AAT-GT--------A--------TAATGAAAATG-AGCGATA--AACAAAATCCACGT-TTGTTG----TTTTCA--TA-CAACAACTGACAATTCA---TC---G---CC---GTACAGATAAGCAACTTCC-GCTT-T-TCATTACAGAACGCTCCCACACTATGtgt
gi|5 : ttaaatagtcagcctaaatttcgtaggttaggttaggttaggagatatactttgcgcctgtaaataacgtataacaggttcatcatttt------TA-ACCGTGCAGTCGATAAAGTG-GAATAGACAACTAGGCGTACAGTATTGAAGTGAGGAGTG-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATAAAAAC--ACAAAAATAGGCAGAAACCAATACAA-GTCTTCAA--AAGCGA-AATGATTTTTCTGTACCAACATCTGAGTA-AC-------AACTGCATATAT-------------T---------------CGTGGAACATCCA---------ATGTATC---CTAA-TTTGATTGCAACAAAA-----T-CCT-CGAAACACGTGTAAAAAT-CA-GGGA---T---CA-CC--AT--TG--C-G---TAT--TTTGA-TCGATATTGTGAAAATGTTTCGGTTCTGAGACA--AATTAGCAT----AAGAAAACAATACTGCGATATAAGATTAATTACTACACATCCTAAATATCG----------T---G-AATAATAAA--------A--------A--------TG-AGCGATAA-AAAAAATCC-ACGT-TTGTTG----TTTTCA--TA-CAGCAACTGACAATTCA---TC---G---CC---GTACAGATCAGCAACTTTC-GCTT-T-TCAATACTGTACGCTCCTACACTGTG
gi|6 : aTGAAATGAGGAGTA-------------CATTGACAAG-----AGCTGTTCTTTTTTT-ATATTAATTAACACTCG--GACAGAAACCCATACAA-GATGTTGA-TGGCA-A-AATGATTTTTGTATAACGACATTTAAGTT-AC-------AACTGCATAAATGCGTGGAAACCTCTA--------------T-----------A---------AT---TTACGCACA-TTTGACAGCAACGGAA-----T-T-TACGTAACATGT-GTAAACATCC-GGGAATGC---CA-C---AT--CG--T------AT--TTTGA-TCGATATTGTGAAAATGTTTGAGTTCTGGGACAGGAAACACAGTTAACAAGTTAACAATACTGCGATATAAG-ATACTTATTGAAAATCTCAAATTTCTTCTTTCTACTT---G-T--AAT-TTTTGACAACA--------T--------TA-AGCGATAAGAACAAAT---GAAT-ATCAAG----TTTTCT--TA-TAGCAACTGATAA---AGCGTC---G---GC---GTACAGATCCGCAACTTCC-GTTT-T-TTAAGACGGTATGCTCCCGCACTGTga
gi|7 : TTTTTA-ATATAAAC--ACTATTGTGGACAGAAGCCAATACAC-GTCATCAA-TGGGGAA-AAGGGGTTT-CTTCAATGGCATCT-----------------TTACACAT-------------------------------T-----------A---------AT---G----CTCACTTTAATAGCAACAAAA-----T-C-C-ATGAATACAT-TTAATTTTCC-GAGA---T---CT------T--CA--TAT---CAT--TTTGA-TTGATATTATGAAAATGTTTGGATTCATCGACA--AACCGGCAA----TATTAAACCATACTGTGA-------ATATTTGC-ACAAATTTAAAATGTCATCTTTCTATTT---G-A--AAT-TT--------A--------T--------TG-AGTGATAACAACAAAATG-ACTT-TTACCG----TTTTCT--TA-CAGCAACTGACAA---A---GT---GTGTCC---GCACAGATCAGAAACTTCC-GTTT-T-TCA------------------CTGAGATTA-TGGAGTACCAACACAAAATGTCAA
gi|8 : taAA-ACA-A--CG-----TATAACAGGT-----A----C---AGACTTTCATTTAATTCGTTGATATAACTGATATTTTTAACTGTCAAC------TA-GCCGTCTAGTCGATGAAGTG-GAATAGGCAACTAGGAGTACAGTATTGAAGTGA--------------------ATTGACAAA-----AGCTGTCGGTTTTTA-ATAAAAAC--ACAAAAATAGGCAGAAACCAATACAA-GTCCTCGA-T-AGGGA-AGTGATTTTTCTGCAAAAACATCTAAGTA-AC-------AACTGTACATAT-------------TCGTGGAACACC----T-----------A---------AT---TTATCCTCA-TTTGATTGCAGCAAAA-----TCC-T-CGAAAAACGTGTAAAA--ACA-GGGA---T---CACC---ATGACG--T------AT--TTTGA-TCGATA------------------------ACA--AATCAGCGT----AAGTAAACAACACTGCctaacagcaataaatcaatgtgcagaa
gi|9 : ggtcaagtgtttaaaaatactttgcgcctgtCCAATACAC-GTCGTCGA-----AGATAACTAATTTATTTTAACTTCATAAACATA-AC-------AA-TGCATGTAT-------------T---------------C-----------AGAAATCCCTAT---TTATGTTCA-TTTCAGAGCAAAACAA-----T-C-CGCGAAACACGT-TAAATTTCCC-GGAA---T---CG-C-------CA--TAT---CATAGTTTGAATCGATATTGTGAAAATGAAAGAATGCCGGGACA--AATCAGCAT----AAGTAAACACTACTGCGG------------TACTACAAATCTTAAGTGTTTTTTATCTACTT---G-A--AAT-TTATGACAAAA--------T--------TG-AACGATAACAACACATC--ACAC-TTCCTG----TTTCCT--TA-TAGCAACTTACAA---AGCGTC---G---CC---GTATAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): CAGATAGTACAAAATAATTGGTTGATATCTATATTTGAATATTTTATTCAACTGTACAGAAACTGGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 555555555 1 333 222 44444444 44444444 1 11 88888888888888888888888888888888888888888 222222222 111 1 1 4444444 1 1111 2222 11 2222222222 22222222 2222222222222 11 1 22222222222222 11111 11 1111111 2222222222222222222222222222222222222222222222222222222222222 3333333333333 11 66666666666666666666666666666 66666666666666666666666666666 333333 222
lowQualScore : 7 7 1 1 1 0 44 888888888 3 0 222 0 0 6 3 6 0 0 7 6 333 11111111 7 7 7 7 22222222 1 7 0 3 0 0 88 0 33 3 1 33333333333333333333333333333333333333333 1 666666666 111 3 3 3 0 0 2 3 0 0 666 0 3 7 66 4 9 6 7 3 7 3333333 0 8888 0 1111 8 8 11 1111111111 3 0 99999999 8 1 6 1 9999999999999 5 66 1 2 22 2 99999999999999 11111 4 1 3 4 44 5 777 33 3 1 1 4 3333333 1 7777777777777777777777777777777777777777777777777777777777777 4 1111111111111 0 22 77 4 00000000000000000000000000000 55 4 55 0 7777 1 44 11 1 1 0 555 3 44 00000000000000000000000000000 3 55 3 000000 1 3 4444 6666 4444 66 2 888 1 3 0 3 3 1 1 0 5 0
lowQualScore : . . . . . . .. ......... . . ... . . . . . . . . . ... ........ . . . . ........ . . . . . . .. . .. . . ......................................... . ......... ... . . . . . . . . . ... . . . .. . . . . . . ....... . .... . .... . . .. .......... . . ........ . . . . ............. . .. . . .. . .............. ..... . . . . .. . ... .. . . . . ....... . ............................................................. . ............. . .. .. . ............................. .. . .. . .... . .. .. . . . ... . .. ............................. . .. . ...... . . .... .... .... .. . ... . . . . . . . . . .
lowQualScore : 3 3 0 0 0 7 00 000000000 3 7 777 7 7 7 7 7 2 7 3 7 333 77777777 3 3 3 3 77777777 0 3 7 3 7 7 33 7 55 2 2 00000000000000000000000000000000000000000 2 555555555 888 5 2 5 8 2 5 2 7 7 333 7 3 3 88 2 2 7 3 3 3 3333333 0 5555 2 2222 0 0 00 0000000000 8 6 88888888 0 4 7 0 6666666666666 7 77 4 0 00 2 99999999999999 11111 0 0 0 0 66 7 111 99 0 0 0 0 0000000 6 7777777777777777777777777777777777777777777777777777777777777 0 7777777777777 3 99 44 0 33333333333333333333333333333 55 0 00 2 7777 8 11 22 0 0 8 888 3 66 44444444444444444444444444444 3 77 3 444444 0 3 9999 5555 3333 99 7 555 0 1 2 1 3 5 8 1 7 4
consensus : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGAAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAAC-AAA---T--ACNT-TT--CTTG----TTTTC-T--TA-CAGCAACTGA-CAA-A-CGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
Reference ( family-5510 ) : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAGT-AGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGAAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAAC-AAA---T--ACNT-TT--CTTG----TTTTC-T--TA-CAGCAACTGA-CAA-A-CGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
gi|1 : TCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATATATATTCACGCAAATCAGCAAGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCAGTACATTAAACAGCTTCTCCATTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGTGTT---CTTGTTGTT------GTCAAGTG-TTTGGTGAATGGTTAAACTACATTTAAAA--ACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCTGTATGTTGTTTAGAACGGTGTCCTCAGAACTTCAACAGTTGATTGTATACTTAATTGCATATTAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCTGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATCTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATTGTGTACATGTGCTGTTTACACTGCTTCATTGTTTTGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGTGCTGATG--TTTCAAAAATCTTGTTCATCCGCCTGTT-TTTAAAATTACAAGACAAGT-------TA------A-------TT-----TGCA-------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACTGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTATATAG-TCGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGG
gi|1 : tAATAATCAACCTTTTTAA-TTTG---TATGCCACACAA----TAGTTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCACATTCAATACATTGACACTGCTGATCTTTCTAGCTGTCAACATTAACT------AAGCTGTGCACTTTTCAAAGTGAGAATAGGCAACTAAGTGTACAGTTGTGAAGTGAAGGATT-------------CACTGACAAC-----AGCTGTCTGTTTTTA-ATATAAACACAACTGT-GGACACAAGCCAATACAC-ATCGTTTA-TGGGGGGAATGGATTTTCTTTAATGACATCTATGTA-AC-------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAA--------C-T--GTAACGAGT-TAAAATTTCC-GGGA---T---CG-C---AT--TGAAT-TTACCAT--TTTGA-TCGATATTATGAAAATATTTGGAGTCTGGGACA--AACTAGCAT----AAGTGAACCACACTGTGATGTAAAAACACTTACTACATATTCGAAATTTCTTCTTTCTACTT---G-A--AAT-TT--------A--------T--------TG-AGCGATAACAAC-AAG------ACTT-TT--CTTG----TTTTC-T--TATTAGCAACTGA-TAA-A-----GCCGTGCAGATCTGCAACTTCT-GCTT-T-TCAAGACAATACATTCTGATCCTGTGATTA-TGAAGTACCGACACAAAATGTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaatttgtatgccacacaatagtttaggaaacaatgttcaggttttatataaatcacattcaatacattgacactgctgatctttctagctgtcaacattaactaagctgtgcacttttcaaagtgagaataggcaactaagtgtacagttgtgaagtgaaggattcactgacaacagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcgtttatggggggaatggattttctttaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaaatttccgggatcgcattgaatttaccattttgatcgatattatgaaaatatttggagtctgggacaaactagcataagtgaaccacactgtgatgtaaaaacacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttattagcaactgataaagccgtgcagatctgcaacttctgcttttcaagacaatacattctgatcctgtgattatgaagtaccgacacaaaatgtcaa
gi|10 : ttctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatatatattcacgcaaatcagcaaggttagccgctgaatatggtaaaaagggttaagcagcaaatgcagtacattaaacagcttctccatttaggtggataaatgacattcaatgcaaatatgttccgatgtagtgttcttgttgttgtcaagtgtttggtgaatggttaaactacatttaaaaacaaatattttgccaggttaacattttctctgagttctgtatgttgtttagaacggtgtcctcagaacttcaacagttgattgtatacttaattgcatattaatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagctgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgatcttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctattgtgtacatgtgctgtttacactgcttcattgttttgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtctggtgctgatgtttcaaaaatcttgttcatccgcctgtttttaaaattacaagacaagttaatttgcactgctcgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaactgttcaatagtgtatcaatgtagtcattttaagtaaaactatatagtcggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgttccggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaataatgaaaacgacatttatcgatttggcattaactggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGTCAAG-----ATCTGCTCGTTTCCA-ATATAAACGCACAAAC-CGACAGAAAGCAATACAATATC-TTGA-TAGCG-ATATAGTTTTTCTATAACAATATCTCAGTATATTCGTGGAAACCCCATATTT-------------T---------------T-----------G-------------------CTCG-TTTGATAGCACTTAAA-----T-C-CATGAAACACGT-ATAAACGTCC-GGGA---A---TG-CCAGAT--CA--T------GT--TTTTA-TCGATATTGTGAAAATGTTTGAGTTCTGGAATA--AACCAGCAG----AAGTAAACAATACTGCGATATAGGAA----TACTACAAATCCGAAATTTCATCTTTCTACTTTACG-A--CAC-A---------A--------T--------TG-AACGATAACAAC-AAA---T--
gi|11 : CTGGCACTGATCATTTTCAAAATGCTCGTTCGTCCGTATATTATTTGCATTCACCAGATAAATGGAAAACTA------AAGAAAGCTTACAAATGCAA------CTGCTCGTTTCATTATTACAT-----------------GACTTCATCTAATAATATT-----AGTGGTT--ATAAGGT--TAACTTAGTTGTTTTAAGTAAAATAATATAAAT--GAATCCTACGTCGATTTCTCTTTTCACTGTTCTATGGGTTTAACGTATACAAA----ACATCTTTACATGTTCTGGTATCCGCCGGTATATGCCGAAAGAACGTATCAATT
gi|12 : AATAGTCAGTCATTTTAA-TTTTGTATATACCTTACAA----TAGCTTAGGAA-ATACACTTGGCGCTT-T--CAAGTTTGATA----G---AAA-TCGCATTTAATC-GTTGACACACCTTATCTTTCTAGCTGTCAAC------T------A-GCCGTACAGTTT-CAAAGTGAGAATAGGCAACTAGGCGTACAGTCGTGAAGTGAGAAGTA-------------CATTGACAAAACATGAGCTGTCCGCTTTTA-ATATAAACACAATACT-AGACAGAAGCAAATACA
gi|13 : tcaGTTTAGAGAGGTGTCCTCGATACTTT--CA-------------TTAATTACATA---ATATGGAAAAAATCGAAATTTCTATAATT---CATGTTTTGTTTA-ACATGAACAGTAACGCCACTCTCACTTTTCAAT---A---ATTTACCACAGTAGTCAGTGCTCACACATGTAAAGCGATGAAAATGG-GTTCAGGGATGTTCTGTTCCTTCGAATCCTACCCTTTGCATTGCCTGCGTGCACTTGTGCCGTCT
gi|14 : GAATACTTTCTACAAATCATAAATCTTGTCTGTCGTCTT---G-A--AAT-AT--------ATAATGAATT--------TG-AGCGATA--AAC-AAAATCC--ACGT-TT--GTTT----TTTTT-TTATA-CAGCAACTTA-CAA-ATCGTCGCCGTACAGATCA-CGACTTCC-GGTT-T-TGAATACTGTAGGCTTCCGCACTGTG---A-TGAAGTATTGA
gi|15 : acgattagaattAACAATACTTCGATATAA-AATACTTACTACAAATCAGAAATGTCTTCTTTCTGCTA---G-A--AAG-CT--------A--------TGAAAAAA-TGAAGCGATAACATC-AAA---T--ACCTCTT--CTTG----TTTTC-T--TA-TAGCAGCTCA-CAA-AGTGTAGTCGCACAAATCCGCAACTTCT-GGTT-T-ACATAACTGTACGGTCCCACACTattcttatcaa
gi|16 : GGTTCTGATACA--AATCAGCGT----AAGACAACAATACTGCGATATAAGTTTACTTACTGCAAATCATCAATTTCGTCTTTCTTC-T---G-A--AAT-GTTTAATGAAA--------C--------TG-AGCGAT--CAGC-AAAATCC--ACGT-TT--GTTG----TTTTC-A--TA-CAGCAAATGA-TAA-T-CATCGCCGTACAGAACAGt
gi|17 : TGAATAATATCTAATACAAATTTATTCCGGTGCAACGTTATTCTTGTT-TTTCATTTGACAAGTTCTTTGGTGGACAGTTAAATTAGATTTAAAGTTTCGAATCTTTTCCCGCAATAACATTGTTTTAGA-----GAAT----TTTAGAGTGGTGTC
gi|18 : CGTCTTTTATCTGAAATAACATGATAAATGGAAAACTATAGAATA-------TT-----TGCAGATGTAACTGTTCGTAGCACTATCATACAA-------TATGGGATGAGTTCATGAAATAATATTTATGTACCGGTCCAAAAGTGCATCA
gi|19 : T--CTTGCGCTTTTTC-T--TA-AAGCAACTAA-CAA-ATCATCGCCATGCAGATCCGCAACTTCC-CCTTGTGTC--GAATGTGCTCTCCCGCATTGTtgt
gi|2 : taaaaaaaaatatcttttagcaattcaTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATAAATGACATTCAATGCAAATATGTTCAGATGTAGTGTTCTTCTTGTT---------GTCAAGTG-TTTAGTGAATGGTTAAACTGCATTTAAA--TACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAACGGTGTCCTCAGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATTTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATCGTGTACATGGGCTGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTTTGGTGCTGATG--TTTCAAAAATCTCGTTCATCCGCCTG-TATTTAAAATTACAAGATAAGT-------TA------A-------TT-----TGCA-------CTGCTTGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACAGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTTTATAG-TTGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTTCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGGacgtacaattacaaactcag
gi|2 : AATAATCAACCTTTTTAATTTTC---TATGCCACACAA----TAGTTAAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-GCACATTCAATCCGTTGACACTGCTGATCTTTCTAGCTGTCAACA-----TTAACTAA-GCTGTGCATTTTTCAAAGTGAGAATAGGCAACTAGGTGTACAGTTGTGAAGTGAAGGGTT-------------CACTGACAAA-----AGCTGTCTGTTTTTA-ATATAAACACAACTGT-GGACACAAGCCAATACAC-ATCATTTA-TGGGAGGAATGGATTTTCTTCAATGACATCTATGTA-AC-------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAA--------C-T--GTAACGAGT-TAAATTTTCC-AGGA---T---CG-C---AT--TGAAT-TTACCAT--TTTGA-TCAATATTATGAAAATGTTTGGATTCTGGGACA--AATTAGCAT----AAGTGAACCATACTGTGATGTAAGAAAACTTACTACATATTCGAAATTTCTTCTTTCTACTT---G-A--AAT-TT--------A--------T--------TG-AGCGATAACAAC-AAG------ACTT-TT--CTTG----TTTTC-T--TA-TAGCAACTGA-TAA-A-----GCCGTGCATATTTGCAACTTCT-GCTT-T-TCAAGATAACACATTCAGATCCTGTGATTA-TGAAGTACCAACACAAAATGTCAActnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaattttctatgccacacaatagttaaggaaacaatgttcaggttttatataaagcacattcaatccgttgacactgctgatctttctagctgtcaacattaactaagctgtgcatttttcaaagtgagaataggcaactaggtgtacagttgtgaagtgaagggttcactgacaaaagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcatttatgggaggaatggattttcttcaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaattttccaggatcgcattgaatttaccattttgatcaatattatgaaaatgtttggattctgggacaaattagcataagtgaaccatactgtgatgtaagaaaacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttatagcaactgataaagccgtgcatatttgcaacttctgcttttcaagataacacattcagatcctgtgattatgaagtaccaacacaaaatgtcaa
gi|20 : tctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatgtatattcacgcaaatcagcacggttagccgctgaatatggtaaaaagggttaagcagcaaatgcgttacattaaacagcttctccaattaggtggataaatgacattcaatgcaaatatgttcagatgtagtgttcttcttgttgtcaagtgtttagtgaatggttaaactgcatttaaatacaaatattttgccaggttaacattttctctgagttccgtatgttgtttagaacggtgtcctcagtacttcaacagttgattgtatacttaattgcataatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagccgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgattttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctatcgtgtacatgggctgtttacactgcttcattgtttcgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtttggtgctgatgtttcaaaaatctcgttcatccgcctgtatttaaaattacaagataagttaatttgcactgcttgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaacagttcaatagtgtatcaatgtagtcattttaagtaaaactttatagttggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgtttcggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaacaatgaaaacgacatttatcgatttggcattaactggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAACAGA-CAATG-CGTTAGTGTACAGATCAGAAACTTCC-GGCT-T-TCAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAGCACAAAATGT
gi|21 : CAACAGA-CAATG-CGTTGATGTACAGATCAGAAACTTCCCGCTT-T--CAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAACACAAAATGTtgactaacagcaataaatgaatgcgccaaa
gi|22 : AA---T--TCAT-TTTGCACG----TTTTCCT--TA--AGCAACGAA-CAA-ATCGTCGCCATCCAGATCTG-AAATTCT-TCTT-tgactaacagcaataaatgaatgtgcc
gi|23 : atatttaagcCTAATCTCCAATGGGAGGAAA-TAAAG--TTTGAATTGAATTGA
gi|3 : ttaactttagttttgattgtaattcatgtatgtaATGTGTTTACATATTCCGGTGT----------ACGCCGAAG-AACGTATTTATTTA----TATA--GACCAAAACACTTTATAAATGTTATAAAGTTT---TTTTTATATTTAAGTGCAATGTAAATAATGAAAATGA
gi|3 : cTAGTCAACTTTTTTCT-TTTG---TATGTCAGACAAAATATAGCTTAGGAATATA-A--TG-----T-T----GCTCTTACAACGTTCAGAAA-TCGCATTCAATC-------ACTGCTAATCTTTCTAGCTGTCAGC------T------A-GCCGTGCAGTTT-CGAAGTGAGAAT------TT--GCGTACAGTCATGAAGTGAGGAGTA-------------CATTGAAAAA-----AGCTCTACGTTTTAA-ATATAA-CATAATAAT-AGACAGAAACCAATACAA-TTCGTCGAATGGG--AAATGATTTTCCTGTAACGACATATAAGTA-AC-------AACTGCATATAT-------------TCACGGAAACTCCTATT-----------A---------AT---GT----TCA-TTTGGTAGCAACAAAAAACGAT------GAAACACGT--AAAATTTCCCAGGA---TAGCCA-C---AT--CA--T-T-----T--TTTGA-TCGATATTATGAAAATGTTTGAGTTCTGGAACA--AACCAGCAG----AAGTAAACAATACTCCATTATAATAATACTTACTACAAATACGAAATTTCTTCTTTCTACTT---GAA--AAT-AA--------A--------T--------TG-AGCGAT------------------CT-TT--C-TG----TTTTC-T--TA-AAGCAACTGATTAA-G-CGCCGCCGTACAGATCCACAACTTCC-GGTT-T-CCAAGACTGTACGCTCCCACACTGTAGTTACTATAGTACAGAtttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaattagtcaacttttttcttttgtatgtcagacaaaatatagcttaggaatataatgttgctcttacaacgttcagaaatcgcattcaatcactgctaatctttctagctgtcagctagccgtgcagtttcgaagtgagaatttgcgtacagtcatgaagtgaggagtacattgaaaaaagctctacgttttaaatataacataataatagacagaaaccaatacaattcgtcgaatgggaaatgattttcctgtaacgacatataagtaacaactgcatatattcacggaaactcctattaatgttcatttggtagcaacaaaaaacgatgaaacacgtaaaatttcccaggatagccacatcattttttgatcgatattatgaaaatgtttgagttctggaacaaaccagcagaagtaaacaatactccattataataatacttactacaaatacgaaatttcttctttctacttgaaaataaattgagcgatctttctgttttcttaaagcaactgattaagcgccgccgtacagatccacaacttccggtttccaagactgtacgctcccacactgtagttactatagtacagatgt
gi|4 : catgtgtttacatattccggtgtacgccgaagaacgtatttatttatatagaccaaaacactttataaatgttataaagttttttttatatttaagtgcaatgtaaataatgaaaatgatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaatATTCAATCCGTTGGTATAACTGATCTTTTTAACTGTCAAC------T------A-GCCGTGCAGTCGATAAAGTG-GAATAAGCAACTAAGCGTACAGTATTGAAGTGAAGAATATATAATAATTATTCATTGATAAA-----AGCTATCCGTTTTTTTATAAAAACACAAAAAT-AAGCAGTAGCCAATACAA-GTCCTCGA-TAGGG-AAATG-TTTTTCTGCACCAACATCTAAGTA-AC-------AACTGCATAAAT-------------T---------------CGTGGAAAACACA---------AT---TTGTCCTCA-TTTGATTGCAACAAAA-----TCC-T-CGAAACACGTGTAAAA-ATCA-GGGA---T---C--------------------------TTGA-TCGATATTGTGAAAATATTTCGGTTCTGAGACA--AATAAGCGT----TAGAAAACAATACTGCGATATAAGATTACATACTACAAATCCTAAATATCGTCGTTCTTCTT---G-A--AAT-GT--------A--------TAATGAAAATG-AGCGATA--AAC-AAAATCC--ACGT-TT--GTTG----TTTTC-A--TA-CAACAACTGA-CAATT-CATCGCCGTACAGATAAGCAACTTCC-GCTT-T-TCATTACAGAACGCTCCCACACTATGtgt
gi|5 : ttaaatagtcagcctaaatttcgtaggttaggttaggttaggagatatactttgcgcctgtaaataacgtataacaggttcatcatttt------T------A-ACCGTGCAGTCGATAAAGTG-GAATAGACAACTAGGCGTACAGTATTGAAGTGAGGAGTG-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATAAAAACACAAAAAT-AGGCAGAAACCAATACAA-GTCTTCAA--AAGCGAAATGATTTTTCTGTACCAACATCTGAGTA-AC-------AACTGCATATAT-------------T---------------CGTGGAACATCCA---------ATGTATC---CTAA-TTTGATTGCAACAAAA-----T-CCT-CGAAACACGTGTAAAAAT-CA-GGGA---T---CA-CC--AT--TG--C-G---TAT--TTTGA-TCGATATTGTGAAAATGTTTCGGTTCTGAGACA--AATTAGCAT----AAGAAAACAATACTGCGATATAAGATTAATTACTACACATCCTAAATATCG----------T---G-AATAATAAA--------A--------A--------TG-AGCGATAA-AAA-AAA---TCCACGT-TT--GTTG----TTTTC-A--TA-CAGCAACTGA-CAATT-CATCGCCGTACAGATCAGCAACTTTC-GCTT-T-TCAATACTGTACGCTCCTACACTGTG
gi|6 : aTGAAATGAGGAGTA-------------CATTGACAAG-----AGCTGTTCTTTTTTT-ATATTAAT-TAACACTCGGACAGAAACCCATACAA-GATGTTGA-TGGCA-AAATGATTTTTGTATAACGACATTTAAGTT-AC-------AACTGCATAAATGCGTGGAAACCTCTA--------------T-----------A---------AT---TTACGCACA-TTTGACAGCAACGGAA-----T-T-TACGTAACATGT-GTAAACATCC-GGGAATGC---CA-C---AT--CG--T------AT--TTTGA-TCGATATTGTGAAAATGTTTGAGTTCTGGGACAGGAAACACAGTTAACAAGTTAACAATACTGCGATATAAGA-TACTTATTGAAAATCTCAAATTTCTTCTTTCTACTT---G-T--AAT-TTTTGACAACA--------T--------TA-AGCGATAAGAAC-AAA---T--GAAT-AT--CAAG----TTTTC-T--TA-TAGCAACTGA-TAA-AGCGTCGGCGTACAGATCCGCAACTTCC-GTTT-T-TTAAGACGGTATGCTCCCGCACTGTga
gi|7 : TTTTTA-ATATAAACACTATTGT-GGACAGAAGCCAATACAC-GTCATCAA-TGGGGAAAAGGGGTTT-CTTCAATGGCATCT-----------------TTACACAT-------------------------------T-----------A---------AT---G----CTCACTTTAATAGCAACAAAA-----T-C-C-ATGAATACAT-TTAATTTTCC-GAGA---T---CT------T--CA--TAT---CAT--TTTGA-TTGATATTATGAAAATGTTTGGATTCATCGACA--AACCGGCAA----TATTAAACCATACTGTGA-------ATATTTGC-ACAAATTTAAAATGTCATCTTTCTATTT---G-A--AAT-TT--------A--------T--------TG-AGTGATAACAACAAAA---TG-ACTT-TT--ACCG----TTTTC-T--TA-CAGCAACTGA-CAA-AGTGTGTCCGCACAGATCAGAAACTTCC-GTTT-T-T------------------CACTGAGATTA-TGGAGTACCAACACAAAATGTCAA
gi|8 : taAA-ACA-A--CG-----TATAACAGGT-----A----C---AGACTTTCATTTAATTCGTTGATATAACTGATATTTTTAACTGTCAAC------T------A-GCCGTCTAGTCGATGAAGTG-GAATAGGCAACTAGGAGTACAGTATTGAAGTGA--------------------ATTGACAAA-----AGCTGTCGGTTTTTA-ATAAAAACACAAAAAT-AGGCAGAAACCAATACAA-GTCCTCGA-T-AGGGAAGTGATTTTTCTGCAAAAACATCTAAGTA-AC-------AACTGTACATAT-------------TCGTGGAACACC----T-----------A---------AT---TTATCCTCA-TTTGATTGCAGCAAAA-----TCC-T-CGAAAAACGTGTAAAA--ACA-GGGA---T---CACC---ATGACG--T------AT--TTTGA-TCGATA------------------------ACA--AATCAGCGT----AAGTAAACAACACTGCctaacagcaataaatcaatgtgcagaa
gi|9 : ggtcaagtgtttaaaaatactttgcgcctgtCCAATACAC-GTCGTCGA---AGATAACTAATTTAT-TTTAACTTCATAAACATA-AC-------AA-TGCATGTAT-------------T---------------C-----------AGAAATCCCTAT---TTATGTTCA-TTTCAGAGCAAAACAA-----T-C-CGCGAAACACGT-TAAATTTCCC-GGAA---T---CG-C-------CA--TAT---CATAGTTTGAATCGATATTGTGAAAATGAAAGAATGCCGGGACA--AATCAGCAT----AAGTAAACACTACTGCGG------------TACTACAAATCTTAAGTGTTTTTTATCTACTT---G-A--AAT-TTATGACAAAA--------T--------TG-AACGATAACAAC-ACA---TC-ACAC-TT--CCTG----TTTCC-T--TA-TAGCAACTTA-CAA-AGCGTCGCCGTATAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): CAGATAGTACAAAATAATTGGTTGATATCTATATTTGAATATTTTATTCAACTGTACAGAAACTGGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 555555555 1 333 222 44444444 44444444 1 11 88888888888888888888888888888888888888888 222222222 111 1 1 4444444 1 1111 2222 11 2222222222 22222222 2222222222222 11 1 22222222222222 11111 11 1111111 2222222222222222222222222222222222222222222222222222222222222 3333333333333 11 66666666666666666666666666666 66666666666666666666666666666 333333 222
lowQualScore : 7 7 1 1 1 0 44 888888888 3 0 222 0 0 6 3 6 0 0 7 6 333 11111111 7 7 7 7 22222222 1 7 0 3 0 0 88 0 33 3 1 33333333333333333333333333333333333333333 1 666666666 555 3 3 3 0 0 2 3 0 0 666 0 3 7 66 4 9 6 7 3 7 3333333 0 8888 0 1111 8 8 11 1111111111 3 0 99999999 8 1 6 1 9999999999999 5 66 1 2 22 2 99999999999999 11111 4 1 0 44 44 5 777 33 3 1 1 4 3333333 1 7777777777777777777777777777777777777777777777777777777777777 4 1111111111111 0 22 77 4 00000000000000000000000000000 55 4 55 0 7777 1 44 11 1 1 0 555 3 44 00000000000000000000000000000 3 55 3 000000 1 3 4444 6666 4444 66 2 888 1 3 0 3 3 1 1 0 5 0
lowQualScore : . . . . . . .. ......... . . ... . . . . . . . . . ... ........ . . . . ........ . . . . . . .. . .. . . ......................................... . ......... ... . . . . . . . . . ... . . . .. . . . . . . ....... . .... . .... . . .. .......... . . ........ . . . . ............. . .. . . .. . .............. ..... . . . .. .. . ... .. . . . . ....... . ............................................................. . ............. . .. .. . ............................. .. . .. . .... . .. .. . . . ... . .. ............................. . .. . ...... . . .... .... .... .. . ... . . . . . . . . . .
lowQualScore : 3 3 0 0 0 7 00 000000000 3 7 777 7 7 7 7 7 2 7 3 7 333 77777777 3 3 3 3 77777777 0 3 7 3 7 7 33 7 55 2 2 00000000000000000000000000000000000000000 2 555555555 222 5 2 5 8 2 5 2 7 7 333 7 3 3 88 2 2 7 3 3 3 3333333 0 5555 2 2222 0 0 00 0000000000 8 6 88888888 0 4 7 0 6666666666666 7 77 4 0 00 2 99999999999999 11111 0 0 3 55 66 7 111 99 0 0 0 0 0000000 6 7777777777777777777777777777777777777777777777777777777777777 0 7777777777777 3 99 44 0 33333333333333333333333333333 55 0 00 2 7777 8 11 22 0 0 8 888 3 66 44444444444444444444444444444 3 77 3 444444 0 3 9999 5555 3333 99 7 555 0 1 2 1 3 5 8 1 7 4
consensus : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGAAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAAC-AAA---T--ACNT-TT--CTTG----TTTTC-T--TA-CAGCAACTGA-CAA-A-CGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
Reference ( family-5510 ) : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGAAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAAC-AAA---T--ACNT-TT--CTTG----TTTTC-T--TA-CAGCAACTGA-CAA-A-CGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
gi|1 : TCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATATATATTCACGCAAATCAGCAAGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCAGTACATTAAACAGCTTCTCCATTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGTGTT---CTTGTTGTT------GTCAAGTG-TTTGGTGAATGGTTAAACTACATTTAAAA--ACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCTGTATGTTGTTTAGAACGGTGTCCTCAGAACTTCAACAGTTGATTGTATACTTAATTGCATATTAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCTGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATCTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATTGTGTACATGTGCTGTTTACACTGCTTCATTGTTTTGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGTGCTGATG--TTTCAAAAATCTTGTTCATCCGCCTGTT-TTTAAAATTACAAGACAAGT-------TA------A-------TT-----TGCA-------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACTGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTATATAG-TCGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGG
gi|1 : tAATAATCAACCTTTTTAA-TTTG---TATGCCACACAA----TAGTTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCACATTCAATACATTGACACTGCTGATCTTTCTAGCTGTCAACATTAACT------AAGCTGTGCACTTTTCAAAGTGAGAATAGGCAACTAAGTGTACAGTTGTGAAGTGAAGGATT-------------CACTGACAAC-----AGCTGTCTGTTTTTA-ATATAAACACAACTGT-GGACACAAGCCAATACAC-ATCGTTTA-TGGGGGGAATGGATTTTCTTTAATGACATCTATGTA-AC-------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAA--------C-T--GTAACGAGT-TAAAATTTCC-GGGA---T---CG-C---AT--TGAAT-TTACCAT--TTTGA-TCGATATTATGAAAATATTTGGAGTCTGGGACA--AACTAGCAT----AAGTGAACCACACTGTGATGTAAAAACACTTACTACATATTCGAAATTTCTTCTTTCTACTT---G-A--AAT-TT--------A--------T--------TG-AGCGATAACAAC-AAG------ACTT-TT--CTTG----TTTTC-T--TATTAGCAACTGA-TAA-A-----GCCGTGCAGATCTGCAACTTCT-GCTT-T-TCAAGACAATACATTCTGATCCTGTGATTA-TGAAGTACCGACACAAAATGTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaatttgtatgccacacaatagtttaggaaacaatgttcaggttttatataaatcacattcaatacattgacactgctgatctttctagctgtcaacattaactaagctgtgcacttttcaaagtgagaataggcaactaagtgtacagttgtgaagtgaaggattcactgacaacagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcgtttatggggggaatggattttctttaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaaatttccgggatcgcattgaatttaccattttgatcgatattatgaaaatatttggagtctgggacaaactagcataagtgaaccacactgtgatgtaaaaacacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttattagcaactgataaagccgtgcagatctgcaacttctgcttttcaagacaatacattctgatcctgtgattatgaagtaccgacacaaaatgtcaa
gi|10 : ttctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatatatattcacgcaaatcagcaaggttagccgctgaatatggtaaaaagggttaagcagcaaatgcagtacattaaacagcttctccatttaggtggataaatgacattcaatgcaaatatgttccgatgtagtgttcttgttgttgtcaagtgtttggtgaatggttaaactacatttaaaaacaaatattttgccaggttaacattttctctgagttctgtatgttgtttagaacggtgtcctcagaacttcaacagttgattgtatacttaattgcatattaatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagctgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgatcttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctattgtgtacatgtgctgtttacactgcttcattgttttgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtctggtgctgatgtttcaaaaatcttgttcatccgcctgtttttaaaattacaagacaagttaatttgcactgctcgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaactgttcaatagtgtatcaatgtagtcattttaagtaaaactatatagtcggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgttccggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaataatgaaaacgacatttatcgatttggcattaactggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGTCAAG-----ATCTGCTCGTTTCCA-ATATAAACGCACAAAC-CGACAGAAAGCAATACAATATC-TTGA-TAGCG-ATATAGTTTTTCTATAACAATATCTCAGTATATTCGTGGAAACCCCATATTT-------------T---------------T-----------G-------------------CTCG-TTTGATAGCACTTAAA-----T-C-CATGAAACACGT-ATAAACGTCC-GGGA---A---TG-CCAGAT--CA--T------GT--TTTTA-TCGATATTGTGAAAATGTTTGAGTTCTGGAATA--AACCAGCAG----AAGTAAACAATACTGCGATATAGGAA----TACTACAAATCCGAAATTTCATCTTTCTACTTTACG-A--CAC-A---------A--------T--------TG-AACGATAACAAC-AAA---T--
gi|11 : CTGGCACTGATCATTTTCAAAATGCTCGTTCGTCCGTATATTATTTGCATTCACCAGATAAATGGAAAACTA------AAGAAAGCTTACAAATGCAA------CTGCTCGTTTCATTATTACAT-----------------GACTTCATCTAATAATATT-----AGTGGTT--ATAAGGT--TAACTTAGTTGTTTTAAGTAAAATAATATAAAT--GAATCCTACGTCGATTTCTCTTTTCACTGTTCTATGGGTTTAACGTATACAAA----ACATCTTTACATGTTCTGGTATCCGCCGGTATATGCCGAAAGAACGTATCAATT
gi|12 : AATAGTCAGTCATTTTAA-TTTTGTATATACCTTACAA----TAGCTTAGGAA-ATACACTTGGCGCTT-T--CAAGTTTGATA----G---AAA-TCGCATTTAATC-GTTGACACACCTTATCTTTCTAGCTGTCAAC------T------A-GCCGTACAGTTT-CAAAGTGAGAATAGGCAACTAGGCGTACAGTCGTGAAGTGAGAAGTA-------------CATTGACAAAACATGAGCTGTCCGCTTTTA-ATATAAACACAATACT-AGACAGAAGCAAATACA
gi|13 : tcaGTTTAGAGAGGTGTCCTCGATACTTT--CA-------------TTAATTACATA---ATATGGAAAAAATCGAAATTTCTATAATT---CATGTTTTGTTTA-ACATGAACAGTAACGCCACTCTCACTTTTCAAT---A---ATTTACCACAGTAGTCAGTGCTCACACATGTAAAGCGATGAAAATGG-GTTCAGGGATGTTCTGTTCCTTCGAATCCTACCCTTTGCATTGCCTGCGTGCACTTGTGCCGTCT
gi|14 : GAATACTTTCTACAAATCATAAATCTTGTCTGTCGTCTT---G-A--AAT-AT--------ATAATGAATT--------TG-AGCGATA--AAC-AAAATCC--ACGT-TT--GTTT----TTTTT-TTATA-CAGCAACTTA-CAA-ATCGTCGCCGTACAGATCA-CGACTTCC-GGTT-T-TGAATACTGTAGGCTTCCGCACTGTG---A-TGAAGTATTGA
gi|15 : acgattagaattAACAATACTTCGATATAA-AATACTTACTACAAATCAGAAATGTCTTCTTTCTGCTA---G-A--AAG-CT--------A--------TGAAAAAA-TGAAGCGATAACATC-AAA---T--ACCTCTT--CTTG----TTTTC-T--TA-TAGCAGCTCA-CAA-AGTGTAGTCGCACAAATCCGCAACTTCT-GGTT-T-ACATAACTGTACGGTCCCACACTattcttatcaa
gi|16 : GGTTCTGATACA--AATCAGCGT----AAGACAACAATACTGCGATATAAGTTTACTTACTGCAAATCATCAATTTCGTCTTTCTTC-T---G-A--AAT-GTTTAATGAAA--------C--------TG-AGCGAT--CAGC-AAAATCC--ACGT-TT--GTTG----TTTTC-A--TA-CAGCAAATGA-TAA-T-CATCGCCGTACAGAACAGt
gi|17 : TGAATAATATCTAATACAAATTTATTCCGGTGCAACGTTATTCTTGTT-TTTCATTTGACAAGTTCTTTGGTGGACAGTTAAATTAGATTTAAAGTTTCGAATCTTTTCCCGCAATAACATTGTTTTAGA-----GAAT----TTTAGAGTGGTGTC
gi|18 : CGTCTTTTATCTGAAATAACATGATAAATGGAAAACTATAGAATA-------TT-----TGCAGATGTAACTGTTCGTAGCACTATCATACAA-------TATGGGATGAGTTCATGAAATAATATTTATGTACCGGTCCAAAAGTGCATCA
gi|19 : T--CTTGCGCTTTTTC-T--TA-AAGCAACTAA-CAA-ATCATCGCCATGCAGATCCGCAACTTCC-CCTTGTGTC--GAATGTGCTCTCCCGCATTGTtgt
gi|2 : taaaaaaaaatatcttttagcaattcaTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATAAATGACATTCAATGCAAATATGTTCAGATGTAGTGTTCTTCTTGTT---------GTCAAGTG-TTTAGTGAATGGTTAAACTGCATTTAAA--TACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAACGGTGTCCTCAGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATTTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATCGTGTACATGGGCTGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTTTGGTGCTGATG--TTTCAAAAATCTCGTTCATCCGCCTG-TATTTAAAATTACAAGATAAGT-------TA------A-------TT-----TGCA-------CTGCTTGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACAGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTTTATAG-TTGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTTCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGGacgtacaattacaaactcag
gi|2 : AATAATCAACCTTTTTAATTTTC---TATGCCACACAA----TAGTTAAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-GCACATTCAATCCGTTGACACTGCTGATCTTTCTAGCTGTCAACA-----TTAACTAA-GCTGTGCATTTTTCAAAGTGAGAATAGGCAACTAGGTGTACAGTTGTGAAGTGAAGGGTT-------------CACTGACAAA-----AGCTGTCTGTTTTTA-ATATAAACACAACTGT-GGACACAAGCCAATACAC-ATCATTTA-TGGGAGGAATGGATTTTCTTCAATGACATCTATGTA-AC-------AAATGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAA--------C-T--GTAACGAGT-TAAATTTTCC-AGGA---T---CG-C---AT--TGAAT-TTACCAT--TTTGA-TCAATATTATGAAAATGTTTGGATTCTGGGACA--AATTAGCAT----AAGTGAACCATACTGTGATGTAAGAAAACTTACTACATATTCGAAATTTCTTCTTTCTACTT---G-A--AAT-TT--------A--------T--------TG-AGCGATAACAAC-AAG------ACTT-TT--CTTG----TTTTC-T--TA-TAGCAACTGA-TAA-A-----GCCGTGCATATTTGCAACTTCT-GCTT-T-TCAAGATAACACATTCAGATCCTGTGATTA-TGAAGTACCAACACAAAATGTCAActnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaattttctatgccacacaatagttaaggaaacaatgttcaggttttatataaagcacattcaatccgttgacactgctgatctttctagctgtcaacattaactaagctgtgcatttttcaaagtgagaataggcaactaggtgtacagttgtgaagtgaagggttcactgacaaaagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcatttatgggaggaatggattttcttcaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaattttccaggatcgcattgaatttaccattttgatcaatattatgaaaatgtttggattctgggacaaattagcataagtgaaccatactgtgatgtaagaaaacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttatagcaactgataaagccgtgcatatttgcaacttctgcttttcaagataacacattcagatcctgtgattatgaagtaccaacacaaaatgtcaa
gi|20 : tctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatgtatattcacgcaaatcagcacggttagccgctgaatatggtaaaaagggttaagcagcaaatgcgttacattaaacagcttctccaattaggtggataaatgacattcaatgcaaatatgttcagatgtagtgttcttcttgttgtcaagtgtttagtgaatggttaaactgcatttaaatacaaatattttgccaggttaacattttctctgagttccgtatgttgtttagaacggtgtcctcagtacttcaacagttgattgtatacttaattgcataatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagccgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgattttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctatcgtgtacatgggctgtttacactgcttcattgtttcgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtttggtgctgatgtttcaaaaatctcgttcatccgcctgtatttaaaattacaagataagttaatttgcactgcttgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaacagttcaatagtgtatcaatgtagtcattttaagtaaaactttatagttggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgtttcggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaacaatgaaaacgacatttatcgatttggcattaactggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAACAGA-CAATG-CGTTAGTGTACAGATCAGAAACTTCC-GGCT-T-TCAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAGCACAAAATGT
gi|21 : CAACAGA-CAATG-CGTTGATGTACAGATCAGAAACTTCCCGCTT-T--CAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAACACAAAATGTtgactaacagcaataaatgaatgcgccaaa
gi|22 : AA---T--TCAT-TTTGCACG----TTTTCCT--TA--AGCAACGAA-CAA-ATCGTCGCCATCCAGATCTG-AAATTCT-TCTT-tgactaacagcaataaatgaatgtgcc
gi|23 : atatttaagcCTAATCTCCAATGGGAGGAAA-TAAAG--TTTGAATTGAATTGA
gi|3 : ttaactttagttttgattgtaattcatgtatgtaATGTGTTTACATATTCCGGTGT----------ACGCCGAAG-AACGTATTTATTTA----TATA--GACCAAAACACTTTATAAATGTTATAAAGTTT---TTTTTATATTTAAGTGCAATGTAAATAATGAAAATGA
gi|3 : cTAGTCAACTTTTTTCT-TTTG---TATGTCAGACAAAATATAGCTTAGGAATATA-A--TG-----T-T----GCTCTTACAACGTTCAGAAA-TCGCATTCAATC-------ACTGCTAATCTTTCTAGCTGTCAGC------T------A-GCCGTGCAGTTT-CGAAGTGAGAAT------TT--GCGTACAGTCATGAAGTGAGGAGTA-------------CATTGAAAAA-----AGCTCTACGTTTTAA-ATATAA-CATAATAAT-AGACAGAAACCAATACAA-TTCGTCGAATGGG--AAATGATTTTCCTGTAACGACATATAAGTA-AC-------AACTGCATATAT-------------TCACGGAAACTCCTATT-----------A---------AT---GT----TCA-TTTGGTAGCAACAAAAAACGAT------GAAACACGT--AAAATTTCCCAGGA---TAGCCA-C---AT--CA--T-T-----T--TTTGA-TCGATATTATGAAAATGTTTGAGTTCTGGAACA--AACCAGCAG----AAGTAAACAATACTCCATTATAATAATACTTACTACAAATACGAAATTTCTTCTTTCTACTT---GAA--AAT-AA--------A--------T--------TG-AGCGAT------------------CT-TT--C-TG----TTTTC-T--TA-AAGCAACTGATTAA-G-CGCCGCCGTACAGATCCACAACTTCC-GGTT-T-CCAAGACTGTACGCTCCCACACTGTAGTTACTATAGTACAGAtttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaattagtcaacttttttcttttgtatgtcagacaaaatatagcttaggaatataatgttgctcttacaacgttcagaaatcgcattcaatcactgctaatctttctagctgtcagctagccgtgcagtttcgaagtgagaatttgcgtacagtcatgaagtgaggagtacattgaaaaaagctctacgttttaaatataacataataatagacagaaaccaatacaattcgtcgaatgggaaatgattttcctgtaacgacatataagtaacaactgcatatattcacggaaactcctattaatgttcatttggtagcaacaaaaaacgatgaaacacgtaaaatttcccaggatagccacatcattttttgatcgatattatgaaaatgtttgagttctggaacaaaccagcagaagtaaacaatactccattataataatacttactacaaatacgaaatttcttctttctacttgaaaataaattgagcgatctttctgttttcttaaagcaactgattaagcgccgccgtacagatccacaacttccggtttccaagactgtacgctcccacactgtagttactatagtacagatgt
gi|4 : catgtgtttacatattccggtgtacgccgaagaacgtatttatttatatagaccaaaacactttataaatgttataaagttttttttatatttaagtgcaatgtaaataatgaaaatgatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaatATTCAATCCGTTGGTATAACTGATCTTTTTAACTGTCAAC------T------A-GCCGTGCAGTCGATAAAGTG-GAATAAGCAACTAAGCGTACAGTATTGAAGTGAAGAATATATAATAATTATTCATTGATAAA-----AGCTATCCGTTTTTTTATAAAAACACAAAAAT-AAGCAGTAGCCAATACAA-GTCCTCGA-TAGGG-AAATG-TTTTTCTGCACCAACATCTAAGTA-AC-------AACTGCATAAAT-------------T---------------CGTGGAAAACACA---------AT---TTGTCCTCA-TTTGATTGCAACAAAA-----TCC-T-CGAAACACGTGTAAAA-ATCA-GGGA---T---C--------------------------TTGA-TCGATATTGTGAAAATATTTCGGTTCTGAGACA--AATAAGCGT----TAGAAAACAATACTGCGATATAAGATTACATACTACAAATCCTAAATATCGTCGTTCTTCTT---G-A--AAT-GT--------A--------TAATGAAAATG-AGCGATA--AAC-AAAATCC--ACGT-TT--GTTG----TTTTC-A--TA-CAACAACTGA-CAATT-CATCGCCGTACAGATAAGCAACTTCC-GCTT-T-TCATTACAGAACGCTCCCACACTATGtgt
gi|5 : ttaaatagtcagcctaaatttcgtaggttaggttaggttaggagatatactttgcgcctgtaaataacgtataacaggttcatcatttt------T------A-ACCGTGCAGTCGATAAAGTG-GAATAGACAACTAGGCGTACAGTATTGAAGTGAGGAGTG-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATAAAAACACAAAAAT-AGGCAGAAACCAATACAA-GTCTTCAA--AAGCGAAATGATTTTTCTGTACCAACATCTGAGTA-AC-------AACTGCATATAT-------------T---------------CGTGGAACATCCA---------ATGTATC---CTAA-TTTGATTGCAACAAAA-----T-CCT-CGAAACACGTGTAAAAAT-CA-GGGA---T---CA-CC--AT--TG--C-G---TAT--TTTGA-TCGATATTGTGAAAATGTTTCGGTTCTGAGACA--AATTAGCAT----AAGAAAACAATACTGCGATATAAGATTAATTACTACACATCCTAAATATCG----------T---G-AATAATAAA--------A--------A--------TG-AGCGATAA-AAA-AAA---TCCACGT-TT--GTTG----TTTTC-A--TA-CAGCAACTGA-CAATT-CATCGCCGTACAGATCAGCAACTTTC-GCTT-T-TCAATACTGTACGCTCCTACACTGTG
gi|6 : aTGAAATGAGGAGTA-------------CATTGACAAG-----AGCTGTTCTTTTTTT-ATATTAAT-TAACACTCGGACAGAAACCCATACAA-GATGTTGA-TGGCA-AAATGATTTTTGTATAACGACATTTAAGTT-AC-------AACTGCATAAATGCGTGGAAACCTCTA--------------T-----------A---------AT---TTACGCACA-TTTGACAGCAACGGAA-----T-T-TACGTAACATGT-GTAAACATCC-GGGAATGC---CA-C---AT--CG--T------AT--TTTGA-TCGATATTGTGAAAATGTTTGAGTTCTGGGACAGGAAACACAGTTAACAAGTTAACAATACTGCGATATAAGA-TACTTATTGAAAATCTCAAATTTCTTCTTTCTACTT---G-T--AAT-TTTTGACAACA--------T--------TA-AGCGATAAGAAC-AAA---T--GAAT-AT--CAAG----TTTTC-T--TA-TAGCAACTGA-TAA-AGCGTCGGCGTACAGATCCGCAACTTCC-GTTT-T-TTAAGACGGTATGCTCCCGCACTGTga
gi|7 : TTTTTA-ATATAAACACTATTGT-GGACAGAAGCCAATACAC-GTCATCAA-TGGGGAAAAGGGGTTT-CTTCAATGGCATCT-----------------TTACACAT-------------------------------T-----------A---------AT---G----CTCACTTTAATAGCAACAAAA-----T-C-C-ATGAATACAT-TTAATTTTCC-GAGA---T---CT------T--CA--TAT---CAT--TTTGA-TTGATATTATGAAAATGTTTGGATTCATCGACA--AACCGGCAA----TATTAAACCATACTGTGA-------ATATTTGC-ACAAATTTAAAATGTCATCTTTCTATTT---G-A--AAT-TT--------A--------T--------TG-AGTGATAACAACAAAA---TG-ACTT-TT--ACCG----TTTTC-T--TA-CAGCAACTGA-CAA-AGTGTGTCCGCACAGATCAGAAACTTCC-GTTT-T-T------------------CACTGAGATTA-TGGAGTACCAACACAAAATGTCAA
gi|8 : taAA-ACA-A--CG-----TATAACAGGT-----A----C---AGACTTTCATTTAATTCGTTGATATAACTGATATTTTTAACTGTCAAC------T------A-GCCGTCTAGTCGATGAAGTG-GAATAGGCAACTAGGAGTACAGTATTGAAGTGA--------------------ATTGACAAA-----AGCTGTCGGTTTTTA-ATAAAAACACAAAAAT-AGGCAGAAACCAATACAA-GTCCTCGA-T-AGGGAAGTGATTTTTCTGCAAAAACATCTAAGTA-AC-------AACTGTACATAT-------------TCGTGGAACACC----T-----------A---------AT---TTATCCTCA-TTTGATTGCAGCAAAA-----TCC-T-CGAAAAACGTGTAAAA--ACA-GGGA---T---CACC---ATGACG--T------AT--TTTGA-TCGATA------------------------ACA--AATCAGCGT----AAGTAAACAACACTGCctaacagcaataaatcaatgtgcagaa
gi|9 : ggtcaagtgtttaaaaatactttgcgcctgtCCAATACAC-GTCGTCGA---AGATAACTAATTTAT-TTTAACTTCATAAACATA-AC-------AA-TGCATGTAT-------------T---------------C-----------AGAAATCCCTAT---TTATGTTCA-TTTCAGAGCAAAACAA-----T-C-CGCGAAACACGT-TAAATTTCCC-GGAA---T---CG-C-------CA--TAT---CATAGTTTGAATCGATATTGTGAAAATGAAAGAATGCCGGGACA--AATCAGCAT----AAGTAAACACTACTGCGG------------TACTACAAATCTTAAGTGTTTTTTATCTACTT---G-A--AAT-TTATGACAAAA--------T--------TG-AACGATAACAAC-ACA---TC-ACAC-TT--CCTG----TTTCC-T--TA-TAGCAACTTA-CAA-AGCGTCGCCGTATAGA
blockSeqs : T A C T A AT TTTCATTT C GTT G C G A G . TCGAAATT A T T T CAGTGCTC A T T AT AT A C GGAAAACTAAAGAAAGCTTACAAATGCAA T AAAACTTAC TGG T T T C A AT C T CC C G C T T A TATTTAA T TGTA AATA T C CT GCGCTTT T ACGTTCAG C G C A ATTAACTA . TT A A CG G ATATAATAATTATT ACATG T A CG AT A ATG AG G A A T TCGTGGA C GCGTGGAAACCTCTATAATTTACG C AAACGAT GT CG C TCGCATTGAATTTACC AG A GG TAAC G AT CG T A TAC A AT ATATAATGAATT A AC A ATCC G C TGCA CGCT TTA C T AT A C G G T C C
blockSeqs : . . CT . . T . . . . . . G . . . . A T . . . TT A A GGAAAACTATAGAATATTTGCAGATGTAA G AA CAA A T A C A TT . . CT T T . . . . . . C . . . . TATAA T G . A C T T . GA A A TG A A . . T C C G TA CG G T T . . A TCACGGAAACTCCTATTAATGT . ATCCAT GT TT . TAGCCACATCATT . . . . G AT AT C G . . . GTTTAATGAAAC . AC . ATCC C . GT . CT T . AG C . . . T C .
blockSeqs : G A T TAATTTGCA A . . . . . . . . . . . G . . . . TT C T . G C T T . GA G A CA G T . . C A A C TG GA A G A . . C TCGTGGAAAACACAATTTGTC . ATCCTC GT TT . ATGCCAGATCAT . . . . G TT AG G T . . . GTATAATGAAAA . AC . ATCC G . CT . T C . AT A . . . T C .
blockSeqs : . . . TT . C . T . A T . GA A . AT A A . . T G A T TA GG A G A . . C TCGTGGAACATCCAATGTATC . ATCCTC A AT . TCACCATTGCGT . . . . G AA AT T G . . . TTTTGACAACAT . AG . TCC T . GT . A A . TG C . . . A G .
blockSeqs : . A T . T A . AT G G . . A A A G TG AT A G A . . C TCGTGGAACACCTAATTTATC . ATTTAC T CA . ATGCCACATCGT . . . . T AT CG T T . . . TTATGACAAAAT . AC . TG A . CT . T T . TG T . . . T A .
blockSeqs : T . T G . AT G A . . A A A A TG G G A A . . C TCAGAAATCCCTATTTATG . ATCCTC G TT . TCACCATGACGT . . . . G TT CG T T . . . CTATGAAAAAA . AC . TC C . CT . T A . AT A . . . T A .
blockSeqs : . . . . C A C C A G A T A . . T TTAATTT . ATCCGC T TT . TCTTCATATC . . . . G TT CT A G . . . AAAAA . C . T G . GT . T C . TT A . . . T C
blockSeqs : . . T G A G T A A G C . . C TAATG . ATCCA T A . TCGCCATATC . . . . G AT CT A G . . . TTAT . A . T G . GT . A C . TT T . . . A C
blockSeqs : . A A C . . . . T . . . . TTG . CT . . . TC . . . . . A TC T T . . . AAAT . . . T A . CA . A T . AG C . . . T T
blockSeqs : . . . T TA G A . . . TTAT . . . T T . AC . T C . AG A . . . G C
blockSeqs : . . TT G T . . . AAT . . . . A . CC . T T . AG A . . . . .
blockSeqs : . C . T . . T C . .
blockSeqs : . A A
blockSeqs : . G
blockSeqCons : T************ ATCCNC******* TCGCCATATCGT***************** NTATAGAAAT******************* TC**** C* AG*
originalCons : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAA-----T-C-T-CGAAACACGT-TAAAATTTCC-GGGA---T---CG-C---AT--CG--T-T---CAT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AAT-NT--------A--------T--------TG-AGCGATAACAAC-AAA---T--ACNT-TT--CTTG----TTTTC-T--TA-CAGCAACTGA-CAA-A-CGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
finalCons : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAACT------------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT-------------T---------------T-----------A---------AT---TT---CTCA-TTTGATAGCAACAAAATCCNC-------GAAACACGT-TAAAATTTCC-GGGATCGCCATATCGT-----------------AT--TTTGA-TCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTT---G-A--AATNTATAGAAAT-------------------TG-AGCGATAACAAC-AAATC----ACNT-TT--CTTG----TTTTC-T--TAC-AGCAACTGA-CAAAG-CGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): CAGATAGTACAAAATAATTGGTTGATATCTATATTTGAATATTTTATTCAACTGTACAGAAACTGGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 555555555 1 333 222 44444444 44444444 1 11 88888888888888888888888888888888888888888 222222222 111 1 1 4444444 1 1111 2222 11 2222222222 22222222 2222222222222 11 1 22222222222222 11111 11 1111111 22222222222222222222222222222222222222222222222222222222222 1 1111 22222222 4444444444444444 22222 111
lowQualScore : 7 7 1 1 1 0 44 888888888 3 0 222 0 0 6 3 6 0 0 7 6 333 11111111 7 7 7 7 22222222 1 7 0 3 0 0 88 0 33 3 1 33333333333333333333333333333333333333333 1 666666666 555 3 3 3 0 0 2 3 0 0 666 0 3 7 66 4 9 6 7 3 7 3333333 0 8888 0 1111 8 8 11 1111111111 3 0 99999999 8 1 6 1 9999999999999 5 66 1 2 22 2 99999999999999 11111 4 1 0 44 44 5 777 33 3 1 1 4 3333333 1 77777777777777777777777777777777777777777777777777777777777 4 4 444 2 1111 0 444 88888888 4 55 0 7777 33 0 11 1 1 0 2222222222222222 0 4 33333 1 3 2 3 111 6 1 3 0 3 3 1 1 0 5 0
lowQualScore : . . . . . . .. ......... . . ... . . . . . . . . . ... ........ . . . . ........ . . . . . . .. . .. . . ......................................... . ......... ... . . . . . . . . . ... . . . .. . . . . . . ....... . .... . .... . . .. .......... . . ........ . . . . ............. . .. . . .. . .............. ..... . . . .. .. . ... .. . . . . ....... . ........................................................... . . ... . .... . ... ........ . .. . .... .. . .. . . . ................ . . ..... . . . . ... . . . . . . . . . . .
lowQualScore : 3 3 0 0 0 7 00 000000000 3 7 777 7 7 7 7 7 2 7 3 7 333 77777777 3 3 3 3 77777777 0 3 7 3 7 7 33 7 55 2 2 00000000000000000000000000000000000000000 2 555555555 222 5 2 5 8 2 5 2 7 7 333 7 3 3 88 2 2 7 3 3 3 3333333 0 5555 2 2222 0 0 00 0000000000 8 6 88888888 0 4 7 0 6666666666666 7 77 4 0 00 2 99999999999999 11111 0 0 3 55 66 7 111 99 0 0 0 0 0000000 6 77777777777777777777777777777777777777777777777777777777777 0 0 555 0 4444 7 333 33333333 0 00 2 7777 00 5 22 0 0 8 5555555555555555 5 6 99999 0 1 9 1 222 7 0 1 2 1 3 5 8 1 7 4
consensus : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT---------------T-----------T-----------A---------AT---TT---CTCA-TTTGATAGCAAC-AAAATCCNCGAAACACGT-TAAAATTT-CCGGGATCGCCATATCG-------TATTTTG-ATCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTTGAAATNTAT--A--GA---A-ATTGAGCGATAACAACAAA--T-CACNT-TTCTTGTTTTC-TTA--CAGCAACTGACAAAGCGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
Reference ( family-5510 ) : NTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCANGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGNTACATTAAACAGCTTCTCCANTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGCGTT-TTCTTGTT-TT------GTCAAGTG-TTTGGTGAACGGTTAAACTACATTTAAAG-TACGAATATTTTGCCGGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAGCGGTGTCCTCGGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATNTTGATGTTCAGGAGTGCTTTATTCCTTCGAAACC-AACCTTTGCATTGCTATCGTGTACATGTGCCGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGCGCTGATG--TTTCAAAAATCTCGTTCGTCCGCCTGTTATTTGAAATTACAAGATAAGTGGAAAACTA------A-------TT-----TGCAG------CTGCTCGTTACACTATTATACAAAACTTACTACGAGAAGAGTTCATGAAATAATATTTATGAAACGGTTCAATAGTGTATCAACGTAGTCGTTTTAAGTAAAACTATATAG-TCGGAATAATACGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCCGCCGGTATATGCCGAAGTAACGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGTCAACCTTTTTAA-TTTN---TATGCCACACAA----TAGCTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCGCATTCAATCCGTTGACACNGCTGATCTTTCTAGCTGTCAAC------T------A-GCCGTGCAGTCGACGAAGTGAGAATAGGCAACTAGGCGTACAGTNNTGAAGTGAGGAGTA-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATATAAACACAANAAT-GGACAGAAGCCAATACAA-GTCGTCGA-TGGGGGAAATGGTTTTTCTNTAACGACATCTAAGTA-AC-------AACTGCATATAT---------------T-----------T-----------A---------AT---TT---CTCA-TTTGATAGCAAC-AAAATCCNCGAAACACGT-TAAAATTT-CCGGGATCGCCATATCG-------TATTTTG-ATCGATATTGTGAAAATGTTTGGGTTCTGGGACA--AATCAGCGT----AAGTAAACAATACTGCGATATAAGAATACTTACTACAAATCCNAAATNTCNTCTTTCTACTTGAAATNTAT--A--GA---A-ATTGAGCGATAACAACAAA--T-CACNT-TTCTTGTTTTC-TTA--CAGCAACTGACAAAGCGTCGCCGTACAGATCNGCAACTTCC-GCTT-T-TCAAGACTGTACGCTCCCACACTGTGATTA-TGGAGTACCGACACAAAATGTCAA
gi|1 : TCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATATATATTCACGCAAATCAGCAAGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCAGTACATTAAACAGCTTCTCCATTTAGGTGGATAAATGACATTCAATGCAAATATGTTCCGATGTAGTGTT---CTTGTTGTT------GTCAAGTG-TTTGGTGAATGGTTAAACTACATTTAAAA--ACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCTGTATGTTGTTTAGAACGGTGTCCTCAGAACTTCAACAGTTGATTGTATACTTAATTGCATATTAATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCTGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATCTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATTGTGTACATGTGCTGTTTACACTGCTTCATTGTTTTGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTCTGGTGCTGATG--TTTCAAAAATCTTGTTCATCCGCCTGTT-TTTAAAATTACAAGACAAGT-------TA------A-------TT-----TGCA-------CTGCTCGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACTGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTATATAG-TCGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTCCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAATAATGAAAACGACATTTATCGATTTGGCATTAACTGG
gi|1 : tAATAATCAACCTTTTTAA-TTTG---TATGCCACACAA----TAGTTTAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-TCACATTCAATACATTGACACTGCTGATCTTTCTAGCTGTCAACATTAACT------AAGCTGTGCACTTTTCAAAGTGAGAATAGGCAACTAAGTGTACAGTTGTGAAGTGAAGGATT-------------CACTGACAAC-----AGCTGTCTGTTTTTA-ATATAAACACAACTGT-GGACACAAGCCAATACAC-ATCGTTTA-TGGGGGGAATGGATTTTCTTTAATGACATCTATGTA-AC-------AAATGCATATAT---------------T-----------T-----------A---------AT---TT---CTCA-TTTGATAGCAAC-AAACT----GTAACGAGT-TAAAATTT-CCGGGATCGC---ATTGAATTTACCATTTTG-ATCGATATTATGAAAATATTTGGAGTCTGGGACA--AACTAGCAT----AAGTGAACCACACTGTGATGTAAAAACACTTACTACATATTCGAAATTTCTTCTTTCTACTTGAAATTT--------------ATTGAGCGATAACAACAAG-----ACTT-TTCTTGTTTTC-TTAT-TAGCAACTGATAAA-----GCCGTGCAGATCTGCAACTTCT-GCTT-T-TCAAGACAATACATTCTGATCCTGTGATTA-TGAAGTACCGACACAAAATGTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaatttgtatgccacacaatagtttaggaaacaatgttcaggttttatataaatcacattcaatacattgacactgctgatctttctagctgtcaacattaactaagctgtgcacttttcaaagtgagaataggcaactaagtgtacagttgtgaagtgaaggattcactgacaacagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcgtttatggggggaatggattttctttaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaaatttccgggatcgcattgaatttaccattttgatcgatattatgaaaatatttggagtctgggacaaactagcataagtgaaccacactgtgatgtaaaaacacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttattagcaactgataaagccgtgcagatctgcaacttctgcttttcaagacaatacattctgatcctgtgattatgaagtaccgacacaaaatgtcaa
gi|10 : ttctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatatatattcacgcaaatcagcaaggttagccgctgaatatggtaaaaagggttaagcagcaaatgcagtacattaaacagcttctccatttaggtggataaatgacattcaatgcaaatatgttccgatgtagtgttcttgttgttgtcaagtgtttggtgaatggttaaactacatttaaaaacaaatattttgccaggttaacattttctctgagttctgtatgttgtttagaacggtgtcctcagaacttcaacagttgattgtatacttaattgcatattaatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagctgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgatcttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctattgtgtacatgtgctgtttacactgcttcattgttttgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtctggtgctgatgtttcaaaaatcttgttcatccgcctgtttttaaaattacaagacaagttaatttgcactgctcgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaactgttcaatagtgtatcaatgtagtcattttaagtaaaactatatagtcggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgttccggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaataatgaaaacgacatttatcgatttggcattaactggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGTCAAG-----ATCTGCTCGTTTCCA-ATATAAACGCACAAAC-CGACAGAAAGCAATACAATATC-TTGA-TAGCG-ATATAGTTTTTCTATAACAATATCTCAGTATATTCGTGGAAACCCCATATTT---------------T-----------T-----------G-------------------CTCG-TTTGATAGCACT-TAAATCCATGAAACACGT-ATAAACGT-CCGGGAATGCCAGATCA-------TGTTTTT-ATCGATATTGTGAAAATGTTTGAGTTCTGGAATA--AACCAGCAG----AAGTAAACAATACTGCGATATAGGAA----TACTACAAATCCGAAATTTCATCTTTCTACTT------TAC-----GACACA-ATTGAACGATAACAACAAA--T-
gi|11 : CTGGCACTGATCATTTTCAAAATGCTCGTTCGTCCGTATATTATTTGCATTCACCAGATAAATGGAAAACTA------AAGAAAGCTTACAAATGCAA------CTGCTCGTTTCATTATTACAT-----------------GACTTCATCTAATAATATT-----AGTGGTT--ATAAGGT--TAACTTAGTTGTTTTAAGTAAAATAATATAAAT--GAATCCTACGTCGATTTCTCTTTTCACTGTTCTATGGGTTTAACGTATACAAA----ACATCTTTACATGTTCTGGTATCCGCCGGTATATGCCGAAAGAACGTATCAATT
gi|12 : AATAGTCAGTCATTTTAA-TTTTGTATATACCTTACAA----TAGCTTAGGAA-ATACACTTGGCGCTT-T--CAAGTTTGATA----G---AAA-TCGCATTTAATC-GTTGACACACCTTATCTTTCTAGCTGTCAAC------T------A-GCCGTACAGTTT-CAAAGTGAGAATAGGCAACTAGGCGTACAGTCGTGAAGTGAGAAGTA-------------CATTGACAAAACATGAGCTGTCCGCTTTTA-ATATAAACACAATACT-AGACAGAAGCAAATACA
gi|13 : tcaGTTTAGAGAGGTGTCCTCGATACTTT--CA-------------TTAATTACATA---ATATGGAAAAAATCGAAATTTCTATAATT---CATGTTTTGTTTA-ACATGAACAGTAACGCCACTCTCACTTTTCAAT---A---ATTTACCACAGTAGTCAGTGCTCACACATGTAAAGCGATGAAAATGG-GTTCAGGGATGTTCTGTTCCTTCGAATCCTACCCTTTGCATTGCCTGCGTGCACTTGTGCCGTCT
gi|14 : GAATACTTTCTACAAATCATAAATCTTGTCTGTCGTCTTGAAATATAT--AATGA---A-TTTGAGCGATAA--ACAAAATC-CACGT-TTGTTTTTTTT-TTATACAGCAACTTACAAATCGTCGCCGTACAGATCA-CGACTTCC-GGTT-T-TGAATACTGTAGGCTTCCGCACTGTG---A-TGAAGTATTGA
gi|15 : acgattagaattAACAATACTTCGATATAA-AATACTTACTACAAATCAGAAATGTCTTCTTTCTGCTAGAAAGCTATGAA--AA---A-ATGAAGCGATAACATCAAA--T--ACCTCTTCTTGTTTTC-TTA--TAGCAGCTCACAAAGTGTAGTCGCACAAATCCGCAACTTCT-GGTT-T-ACATAACTGTACGGTCCCACACTattcttatcaa
gi|16 : GGTTCTGATACA--AATCAGCGT----AAGACAACAATACTGCGATATAAGTTTACTTACTGCAAATCATCAATTTCGTCTTTCTTC-TGAAATGTTT--AATGA---A-ACTGAGCGAT--CAGCAAAATC-CACGT-TTGTTGTTTTC-ATA--CAGCAAATGAT-AATCATCGCCGTACAGAACAGt
gi|17 : TGAATAATATCTAATACAAATTTATTCCGGTGCAACGTTATTCTTGTT-TTTCATTTGACAAGTTCTTTGGTGGACAGTTAAATTAGATTTAAAGTTTCGAATCTTTTCCCGCAATAACATTGTTTTAGA-----GAAT----TTTAGAGTGGTGTC
gi|18 : CGTCTTTTATCTGAAATAACATGATAAATGGAAAACTATAGAATA-------TT-----TGCAGATGTAACTGTTCGTAGCACTATCATACAA-------TATGGGATGAGTTCATGAAATAATATTTATGTACCGGTCCAAAAGTGCATCA
gi|19 : AGCAAT--T-CATCT-TGCGCTTTTTC-TTA--AAGCAACTAACAAATCATCGCCATGCAGATCCGCAACTTCC-CCTTGTGTC--GAATGTGCTCTCCCGCATTGTtgt
gi|2 : taaaaaaaaatatcttttTCTAATCACTAATAGGAGGAAATTAAAGAATATGAATTCAATTGAGTTCATGTATATTCACGCAAATCAGCACGGTTAGCCGCTGAATATGGTAAAAAGGGTTAAGCAGCAAATGCGTTACATTAAACAGCTTCTCCAATTAGGTGGATAAATGACATTCAATGCAAATATGTTCAGATGTAGTGTTCTTCTTGTT---------GTCAAGTG-TTTAGTGAATGGTTAAACTGCATTTAAA--TACAAATATTTTGCCAGGTTAACATTTTCTCTGAGTTCCGTATGTTGTTTAGAACGGTGTCCTCAGTACTTCAACAGTTGATTGTATACTTAATTGCATA---ATGTGTAAAAGA--G-----TCTATTATTATACACGTTTTCTTTTTACATGAACAGTTAAGCCGCACAAACTTTTCAATTACATGTATATACCACAGTGGT-A------ACACATGTAAAGCGATGATTTTGATGTTCAGGAGTGCTTTATTCCTTCAAAACC-AACCTTTGCATTGCTATCGTGTACATGGGCTGTTTACACTGCTTCATTGTTTCGTTGAAAAAGTACACTTTAACACTCCTGACTTTTGATCACTTCTAAAATGTTTTGTTTGGTGCTGATG--TTTCAAAAATCTCGTTCATCCGCCTG-TATTTAAAATTACAAGATAAGT-------TA------A-------TT-----TGCA-------CTGCTTGTTACACTATTATACAAAACTTACTACAAGAAGAGTTCATGAAATAATATTTATGAAACAGTTCAATAGTGTATCAATGTAGTCATTTTAAGTAAAACTTTATAG-TTGGAATAATATGTCTATTTCTATTTTCATTACAACATGGTTTTAATCTATA-ATATTTTATATGTTTACATGTTTCGGTATCTGCTGGTATATACTGAAGTAATGTATTAATTTACTTGTATATTGGCCAAAATACTT-ATAAATGTTATAAACTTTAAATTTTTA-------GTGCAAAGTAAACAATGAAAACGACATTTATCGATTTGGCATTAACTGGacgtacaattacaaactcag
gi|2 : AATAATCAACCTTTTTAATTTTC---TATGCCACACAA----TAGTTAAGGAA-ACA-A--TG-----T-T--CAGGTTTTATA----T---AAA-GCACATTCAATCCGTTGACACTGCTGATCTTTCTAGCTGTCAACA-----TTAACTAA-GCTGTGCATTTTTCAAAGTGAGAATAGGCAACTAGGTGTACAGTTGTGAAGTGAAGGGTT-------------CACTGACAAA-----AGCTGTCTGTTTTTA-ATATAAACACAACTGT-GGACACAAGCCAATACAC-ATCATTTA-TGGGAGGAATGGATTTTCTTCAATGACATCTATGTA-AC-------AAATGCATATAT---------------T-----------T-----------A---------AT---TT---CTCA-TTTGATAGCAAC-AAACT----GTAACGAGT-TAAATTTT-CCAGGATCGC---ATTGAATTTACCATTTTG-ATCAATATTATGAAAATGTTTGGATTCTGGGACA--AATTAGCAT----AAGTGAACCATACTGTGATGTAAGAAAACTTACTACATATTCGAAATTTCTTCTTTCTACTTGAAATTT--------------ATTGAGCGATAACAACAAG-----ACTT-TTCTTGTTTTC-TTA--TAGCAACTGATAAA-----GCCGTGCATATTTGCAACTTCT-GCTT-T-TCAAGATAACACATTCAGATCCTGTGATTA-TGAAGTACCAACACAAAATGTCAActnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatcaacctttttaattttctatgccacacaatagttaaggaaacaatgttcaggttttatataaagcacattcaatccgttgacactgctgatctttctagctgtcaacattaactaagctgtgcatttttcaaagtgagaataggcaactaggtgtacagttgtgaagtgaagggttcactgacaaaagctgtctgtttttaatataaacacaactgtggacacaagccaatacacatcatttatgggaggaatggattttcttcaatgacatctatgtaacaaatgcatatatttaatttctcatttgatagcaacaaactgtaacgagttaaattttccaggatcgcattgaatttaccattttgatcaatattatgaaaatgtttggattctgggacaaattagcataagtgaaccatactgtgatgtaagaaaacttactacatattcgaaatttcttctttctacttgaaatttattgagcgataacaacaagacttttcttgttttcttatagcaactgataaagccgtgcatatttgcaacttctgcttttcaagataacacattcagatcctgtgattatgaagtaccaacacaaaatgtcaa
gi|20 : tctaatcactaataggaggaaattaaagaatatgaattcaattgagttcatgtatattcacgcaaatcagcacggttagccgctgaatatggtaaaaagggttaagcagcaaatgcgttacattaaacagcttctccaattaggtggataaatgacattcaatgcaaatatgttcagatgtagtgttcttcttgttgtcaagtgtttagtgaatggttaaactgcatttaaatacaaatattttgccaggttaacattttctctgagttccgtatgttgtttagaacggtgtcctcagtacttcaacagttgattgtatacttaattgcataatgtgtaaaagagtctattattatacacgttttctttttacatgaacagttaagccgcacaaacttttcaattacatgtatataccacagtggtaacacatgtaaagcgatgattttgatgttcaggagtgctttattccttcaaaaccaacctttgcattgctatcgtgtacatgggctgtttacactgcttcattgtttcgttgaaaaagtacactttaacactcctgacttttgatcacttctaaaatgttttgtttggtgctgatgtttcaaaaatctcgttcatccgcctgtatttaaaattacaagataagttaatttgcactgcttgttacactattatacaaaacttactacaagaagagttcatgaaataatatttatgaaacagttcaatagtgtatcaatgtagtcattttaagtaaaactttatagttggaataatatgtctatttctattttcattacaacatggttttaatctataatattttatatgtttacatgtttcggtatctgctggtatatactgaagtaatgtattaatttacttgtatattggccaaaatacttataaatgttataaactttaaatttttagtgcaaagtaaacaatgaaaacgacatttatcgatttggcattaactggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAACAGACAATGCGTTAGTGTACAGATCAGAAACTTCC-GGCT-T-TCAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAGCACAAAATGT
gi|21 : CAACAGACAATGCGTTGATGTACAGATCAGAAACTTCCCGCTT-T--CAAGACTGTACGTTTCAACTCTGTAATTA-TGGAATACCAACACAAAATGTtgactaacagcaataaatgaatgcgccaaa
gi|22 : AGCAAT--T-CATTT-TGCACGTTTTCCTTA---AGCAACGAACAAATCGTCGCCATCCAGATCTG-AAATTCT-TCTT-tgactaacagcaataaatgaatgtgcc
gi|23 : atatttaCTAATCTCCAATGGGAGGAAA-TAAAG--TTTGAATTGAATTGA
gi|3 : ttaactttagttttgattgtaattcatgtatgtaATGTGTTTACATATTCCGGTGT----------ACGCCGAAG-AACGTATTTATTTA----TATA--GACCAAAACACTTTATAAATGTTATAAAGTTT---TTTTTATATTTAAGTGCAATGTAAATAATGAAAATGA
gi|3 : cTAGTCAACTTTTTTCT-TTTG---TATGTCAGACAAAATATAGCTTAGGAATATA-A--TG-----T-T----GCTCTTACAACGTTCAGAAA-TCGCATTCAATC-------ACTGCTAATCTTTCTAGCTGTCAGC------T------A-GCCGTGCAGTTT-CGAAGTGAGAAT------TT--GCGTACAGTCATGAAGTGAGGAGTA-------------CATTGAAAAA-----AGCTCTACGTTTTAA-ATATAA-CATAATAAT-AGACAGAAACCAATACAA-TTCGTCGAATGGG--AAATGATTTTCCTGTAACGACATATAAGTA-AC-------AACTGCATATATTCACGGAAACTCCTAT-----------T-----------A---------AT---GT----TCA-TTTGGTAGCAACAAAAAACGATGAAACACG--TAAAATTTCCCAGGATAGCCACATCA-------TTTTTTG-ATCGATATTATGAAAATGTTTGAGTTCTGGAACA--AACCAGCAG----AAGTAAACAATACTCCATTATAATAATACTTACTACAAATACGAAATTTCTTCTTTCTACTTGAAA---AT------A---A-ATTGAGCGAT----------------CT-TTC-TGTTTTC-TTA--AAGCAACTGATTAAGCGCCGCCGTACAGATCCACAACTTCC-GGTT-T-CCAAGACTGTACGCTCCCACACTGTAGTTACTATAGTACAGAtttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaattagtcaacttttttcttttgtatgtcagacaaaatatagcttaggaatataatgttgctcttacaacgttcagaaatcgcattcaatcactgctaatctttctagctgtcagctagccgtgcagtttcgaagtgagaatttgcgtacagtcatgaagtgaggagtacattgaaaaaagctctacgttttaaatataacataataatagacagaaaccaatacaattcgtcgaatgggaaatgattttcctgtaacgacatataagtaacaactgcatatattcacggaaactcctattaatgttcatttggtagcaacaaaaaacgatgaaacacgtaaaatttcccaggatagccacatcattttttgatcgatattatgaaaatgtttgagttctggaacaaaccagcagaagtaaacaatactccattataataatacttactacaaatacgaaatttcttctttctacttgaaaataaattgagcgatctttctgttttcttaaagcaactgattaagcgccgccgtacagatccacaacttccggtttccaagactgtacgctcccacactgtagttactatagtacagatgt
gi|4 : catgtgtttacatattccggtgtacgccgaagaacgtatttatttatatagaccaaaacactttataaatgttataaagttttttttatatttaagtgcaatgtaaataatgaaaatgatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttatagtagaatcatttagtattcaatATTCAATCCGTTGGTATAACTGATCTTTTTAACTGTCAAC------T------A-GCCGTGCAGTCGATAAAGTG-GAATAAGCAACTAAGCGTACAGTATTGAAGTGAAGAATATATAATAATTATTCATTGATAAA-----AGCTATCCGTTTTTTTATAAAAACACAAAAAT-AAGCAGTAGCCAATACAA-GTCCTCGA-TAGGG-AAATG-TTTTTCTGCACCAACATCTAAGTA-AC-------AACTGCATAAAT---------------T-----------CGTGGAAAACACA---------AT---TTGTCCTCA-TTTGATTGCAAC-AAAATCCTCGAAACACGTGTAAAA-AT-CAGGGATC--------------------TTG-ATCGATATTGTGAAAATATTTCGGTTCTGAGACA--AATAAGCGT----TAGAAAACAATACTGCGATATAAGATTACATACTACAAATCCTAAATATCGTCGTTCTTCTTGAAATGTAT--AATGA---A-AATGAGCGATA--AACAAAATC-CACGT-TTGTTGTTTTC-ATA--CAACAACTGACAATTCATCGCCGTACAGATAAGCAACTTCC-GCTT-T-TCATTACAGAACGCTCCCACACTATGtgt
gi|5 : ttaaatagtcagcctaaatttcgtaggttaggttaggttaggagatatactttgcgcctgtaaataacgtataacaggttcatcatttt------T------A-ACCGTGCAGTCGATAAAGTG-GAATAGACAACTAGGCGTACAGTATTGAAGTGAGGAGTG-------------CATTGACAAA-----AGCTGTCCGTTTTTA-ATAAAAACACAAAAAT-AGGCAGAAACCAATACAA-GTCTTCAA--AAGCGAAATGATTTTTCTGTACCAACATCTGAGTA-AC-------AACTGCATATAT---------------T-----------CGTGGAACATCCA---------ATGTATC---CTAA-TTTGATTGCAAC-AAAATCCTCGAAACACGTGTAAAAAT--CAGGGATCACCATTGCG-------TATTTTG-ATCGATATTGTGAAAATGTTTCGGTTCTGAGACA--AATTAGCAT----AAGAAAACAATACTGCGATATAAGATTAATTACTACACATCCTAAATATCGT-----------GAATA-AT--A--AA---A-A-TGAGCGATAA-AAAAAA--TCCACGT-TTGTTGTTTTC-ATA--CAGCAACTGACAATTCATCGCCGTACAGATCAGCAACTTTC-GCTT-T-TCAATACTGTACGCTCCTACACTGTG
gi|6 : aTGAAATGAGGAGTA-------------CATTGACAAG-----AGCTGTTCTTTTTTT-ATATTAAT-TAACACTCGGACAGAAACCCATACAA-GATGTTGA-TGGCA-AAATGATTTTTGTATAACGACATTTAAGTT-AC-------AACTGCATAAATGCGTGGAAACCTC--TA----------T-----------A---------AT---TTACGCACA-TTTGACAGCAAC-GGAATTTACGTAACATGT-GTAAACAT-CCGGGAATGCCACATCG-------TATTTTG-ATCGATATTGTGAAAATGTTTGAGTTCTGGGACAGGAAACACAGTTAACAAGTTAACAATACTGCGATATAAG-ATACTTATTGAAAATCTCAAATTTCTTCTTTCTACTTGTAATTTTTG-A--CA---ACATTAAGCGATAAGAACAAA--T-GA-AT-ATCAAGTTTTC-TTA--TAGCAACTGATAAAGCGTCGGCGTACAGATCCGCAACTTCC-GTTT-T-TTAAGACGGTATGCTCCCGCACTGTga
gi|7 : TTTTTA-ATATAAACACTATTGT-GGACAGAAGCCAATACAC-GTCATCAA-TGGGGAAAAGGGGTTT-CTTCAATGGCATCT-----------------TTACACAT-----------------------------T-----------A---------AT---G----CTCACTTTAATAGCAAC-AAAATCCATGAA-TACAT-TTAATTTT-CCGAGATCTTCATATC---------ATTTTG-ATTGATATTATGAAAATGTTTGGATTCATCGACA--AACCGGCAA----TATTAAACCATACTGTGA-------ATATTTGC-ACAAATTTAAAATGTCATCTTTCTATTTGAAATTTAT--------------TGAGTGATAACAACAAAA-T-GACTT-TTACCGTTTTC-TTA--CAGCAACTGACAAAGTGTGTCCGCACAGATCAGAAACTTCC-GTTT-T-T------------------CACTGAGATTA-TGGAGTACCAACACAAAATGTCAA
gi|8 : taAA-ACA-A--CG-----TATAACAGGT-----A----C---AGACTTTCATTTAATTCGTTGATATAACTGATATTTTTAACTGTCAAC------T------A-GCCGTCTAGTCGATGAAGTG-GAATAGGCAACTAGGAGTACAGTATTGAAGTGA--------------------ATTGACAAA-----AGCTGTCGGTTTTTA-ATAAAAACACAAAAAT-AGGCAGAAACCAATACAA-GTCCTCGA-T-AGGGAAGTGATTTTTCTGCAAAAACATCTAAGTA-AC-------AACTGTACATAT---------------TCGTGGAACACCT-----------A---------AT---TTATCCTCA-TTTGATTGCAGC-AAAATCCTCGAAAAACGTGTAAAA--A-CAGGGATCACCATGACG-------TATTTTG-ATCGATA------------------------ACA--AATCAGCGT----AAGTAAACAACACTGCctaacagcaataaatcaatgtgcagaa
gi|9 : ggtcaagtgtttaaaaatactttgcgcctgtCCAATACAC-GTCGTCGA---AGATAACTAATTTAT-TTTAACTTCATAAACATA-AC-------AA-TGCATGTAT---------------T-----------C-----------AGAAATCCCTAT---TTATGTTCA-TTTCAGAGCAAA-ACAATCCGCGAAACACGT-TAAATTTC-CCGGAATCGCCATATCA-------TAGTTTGAATCGATATTGTGAAAATGAAAGAATGCCGGGACA--AATCAGCAT----AAGTAAACACTACTGCGG------------TACTACAAATCTTAAGTGTTTTTTATCTACTTGAAATTTAT--GACAA---A-ATTGAACGATAACAACACA--T-CACAC-TTCCTGTTTCC-TTA--TAGCAACTTACAAAGCGTCGCCGTATAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): CAGATAGTACAAAATAATTGGTTGATATCTATATTTGAATATTTTATTCAACTGTACAGAAACTGGA