lowQualScore : 11 33333333333333333 111 1 1111 222 2
lowQualScore : 55 11 88888888888888888 0 99999 333 44 99 4 8888 0000 2 000 3 4 6
lowQualScore : .. .. ................. . ..... ... .. .. . .... .... . ... . . .
lowQualScore : 55 00 55555555555555555 1 88888 000 22 99 7 5555 6666 0 222 0 6 0
consensus : GGTCT--CACT--ACA-T--CA----G----ATTTCGCTATA---TAAT--CT--ATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAACTTTTATTTTTACACATACATTTTTT
Reference ( gi|4 ) : GGTCT--CACT--ACG----CA----G----GTTTTGCTATA---TCAT--AT--ATAT-GAAACAGTGACTGCCTGTTTC----ACT----ATAACTTTTCTTTTCACACATACACTTCTTA
gi|1 : GGTCT--CACT--ACATTGTCA----G----ATCC-ATTATA---CAAT--CT--ATAT-TAAACAATGCCTGCCTGTTTC----ACT----ATAATTTTTTTTTTTACACATACATTTTTT
gi|2 : aaGGTCTTTCAGT--ACG----CA----GTCATATTTTGCTATAAAATCAT--AT--A-----AAACAGTGACTGTCTGTTTC----ACA----ATAACTTTTAATTT-ACACAttaaa
gi|3 : taaGGTCT--CGCT--ACA----CACTCAG----ATTCCACTATA---TAAT--CT--ATATTAAAAAAGTGTCTGCCTGTTTT----ACT----ATAACTATT-TTATTACACATACAATTTTTaaacaattatttt
gi|12 : aGGCCT--CACT--ATA----CA----GTCTGATTTTGCTATA---GCAT--CT--ATAT-AAAACAGTGTCTGCCTATTTC----A
gi|11 : GGTCT--CATT--TCG----CA----G------------------TCAT--GTTTATAT-AAAACAGTGTCTGGCTGTTTCTGTAACTGCCGATAACTT---TTTTTACACAT
gi|15 : aGGTCT--CACT--ATA----CAATCAG----ATTCCACTATA---TAAT--CT--ATAC-AAAACAGTGTCTACCTGTCT
gi|14 : GGTCT--CACTTCACAGT--CA----G----GCTTTGCTATA---TACT--CT--TTAT-AAAATAGTGTTTGCCTGTT
gi|9 : aGTCT--CACT--ACAAT--TA----G----ATCTTGCTATA---TAAT--AT--ATAT-CAAACAGTGTCTGC----------------------CTTTTATTTT-ACACAAACATTTTTT
gi|5 : CT--CACT--ACAGT--CA----T----AGTTTGCTATA---TAAT--CT--CTAT-GAAACATTTTCTGCCTGTTTC----ACT----AT-ACGT---TTTTTACACATATAtaa
gi|16 : cCT--CACTTCACAGT--CA----G----ACTTTGCTATA---TACT--CT--TTAT-AAAATAGTGTCTGCCTGTTTC----atgttatcta
gi|8 : ----CA----G----ATTCCGGTATA---CAAT--CC--ATAC-AAAACAGTGTTTGCCTGTTTC----ACT----ATGACTTTTGTTTT-GCACATACAC
gi|7 : ctaaggt----CA----G----AGTTTGCTATG---TAGT--CT--ATAT-AA-----T--CTGGCTGTGTC----ACT----ATAACTTTGATTTT-ACACATACATTTTTT
gi|13 : cacagtTTTTGCTATA---TAATCAAT--ATAT-AAAATAGTGTATGCCCGTTTttaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ATTAAATAATATATTGATATATATATATATATATAAGCTCATGTCTGTCATTTATCACTTTGCATTTTATACACAAAACACTTTTGTTA
Unaligned ( gi|10 ): CACATTCTGGGTTGGCTTTGTAGACTGTATACAAAAATACCGTTCTATTTACAATGCAATTTTGTTCAACAAACAGACT
Unaligned ( gi|17 ): TGTTGATATCATCAATGTGTAGGTCCCATACTGTTGCTGTA
Alignments
lowQualScore : 4444444 2222
lowQualScore : 55 99 2222222 0 2 33 2 7777 9999 0 2222
lowQualScore : .. .. ....... . . .. . .... .... . ....
lowQualScore : 00 22 5555555 3 9 99 9 7777 4444 8 7777
consensus : GGTCT--CACT--ACAN--T---CAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAACTTTT-TTTTTACACATACATTTTTT
Reference ( family-5318 ) : GGTCT--CACT--ACA---T---CAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAACTTTTATTTTTACACATACATTTTTT
gi|1 : GGTCT--CACT--ACA---TTGTCAGATC-CATTAT-ACAATC--TATAT-TAAACAATGCCTGCCTGTTTC----ACT----ATAATTTTTTTTTTTACACATACATTTTTT
gi|11 : aaATTTCGCAGTCATG-TT--TATAT-AAAACAGTGTCTGGCTGTTTCTGTAACTGCCGATAACTT---TTTTTACACATttaaa
gi|12 : aggtctcGGCCT--CACT--ATACAGT---CTGATTTTGCTAT-AGCATC--TATAT-AAAACAGTGTCTGCCTATTTC----A
gi|13 : GTCT--CTAT--ACACTGT---CACATTTTGCTAT-ATAATCAATATAT-AAAATAGTGTATGCCCGTTT
gi|14 : GGTCT--CACTTCACAG--T---CAGGCTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTTTGCCTGTT
gi|15 : aGGTCT--CACT--ATACAAT---CAGATTCCACTAT-ATAATC--TATAC-AAAACAGTGTCTACCTGTCT
gi|16 : CT--CACTTCACAG--T---CAGACTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTCTGCCTGTTTC----
gi|2 : GGTCTTTCAGT--ACGCAGT---CATATTTTGCTAT-AAAATC---ATAT-AAAACAGTGACTGTCTGTTTC----ACA----ATAACTTTTA-ATTTACACA
gi|3 : taaGGTCT--CGCT--ACACACT---CAGATTCCACTAT-ATAATC--TATATTAAAAAAGTGTCTGCCTGTTTT----ACT----ATAACTATT-TTATTACACATACAATTTTTaaacaattatttt
gi|4 : aGGTCT--CACT--ACG-------CAGGTTTTGCTAT-ATCATA--TATAT-GAAACAGTGACTGCCTGTTTC----ACT----ATAACTTTTCTTTTCACACATACACTTCTT
gi|5 : CT--CACT--ACAG--T---CATAGTTTGCTAT-ATAATC--TCTAT-GAAACATTTTCTGCCTGTTTC----ACT----AT-ACGT---TTTTTACACATATAa
gi|7 : c--ACAG--T---CAGAGTTTGCTAT-GTAGTC--TATAT-AA-------TCTGGCTGTGTC----ACT----ATAACTTTGA-TTTTACACATACATTTTTTatgttatcta
gi|8 : c---T---CAGATTCCGGTAT-ACAATC--CATAC-AAAACAGTGTTTGCCTGTTTC----ACT----ATGACTTTTG-TTTTGCACATACAttaa
gi|9 : ctaaggGTCT--CACT--ACAA--T---TAGATCTTGCTAT-ATAATA--TATAT-CAAACAGTGTCTGC----------------------CTTTTA-TTTTACACAAACATTTTTTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTAAATAATATATTGATATATATATATATATATAAGCTCATGTCTGTCATTTATCACTTTGCATTTTATACACAAAACACTTTTGTTA
Unaligned ( gi|10 ): CACATTCTGGGTTGGCTTTGTAGACTGTATACAAAAATACCGTTCTATTTACAATGCAATTTTGTTCAACAAACAGACT
Unaligned ( gi|17 ): TGTTGATATCATCAATGTGTAGGTCCCATACTGTTGCTGTA
Alignments
lowQualScore : 55 88 88 44 999999 0 2 33 2 7777 9999 4 66
lowQualScore : .. .. .. .. ...... . . .. . .... .... . ..
lowQualScore : 00 55 55 22 555555 3 9 99 9 7777 4444 4 88
consensus : GGTCT--CACT--A--C--AG--T--CAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTT-NTTTTACACATACATTTTTT
Reference ( family-5318 ) : GGTCT--CACT--A--C--AN--T--CAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTT-TTTTTACACATACATTTTTT
gi|1 : GGTCT--CACT--A--C--AT--TGTCAGATC-CATTAT-ACAATC--TATAT-TAAACAATGCCTGCCTGTTTC----ACT----ATAATTTTTT-TTTTTACACATACATTTTTT
gi|11 : aaATTTCGCAGTCATG-TT--TATAT-AAAACAGTGTCTGGCTGTTTCTGTAACTGCCGATAA-C--TT-TTTTTACACATttaaa
gi|12 : aggtctcGGCCT--CACT--ATAC--AG--T--CTGATTTTGCTAT-AGCATC--TATAT-AAAACAGTGTCTGCCTATTTC----A
gi|13 : GTCT--CTAT--A--C--AC--TGTCACATTTTGCTAT-ATAATCAATATAT-AAAATAGTGTATGCCCGTTT
gi|14 : GGTCT--CACTTCA--C--AG--T--CAGGCTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTTTGCCTGTT
gi|15 : aGGTCT--CACT--ATAC--AA--T--CAGATTCCACTAT-ATAATC--TATAC-AAAACAGTGTCTACCTGTCT
gi|16 : CT--CACTTCA--C--AG--T--CAGACTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTCTGCCTGTTTC----
gi|2 : GGTCTTTCAGT--A--CGCAG--T--CATATTTTGCTAT-AAAATC---ATAT-AAAACAGTGACTGTCTGTTTC----ACA----ATAA-CTTTT-AATTTACACA
gi|3 : taaGGTCT--CGCT--A--C--ACACT--CAGATTCCACTAT-ATAATC--TATATTAAAAAAGTGTCTGCCTGTTTT----ACT----ATAA-CTATT-TTATTACACATACAATTTTTaaacaattatttt
gi|4 : aGGTCT--CACT--A--C--G------CAGGTTTTGCTAT-ATCATA--TATAT-GAAACAGTGACTGCCTGTTTC----ACT----ATAA-CTTTTCTTTTCACACATACACTTCTT
gi|5 : CT--CACT--A--C--AG--T--CATAGTTTGCTAT-ATAATC--TCTAT-GAAACATTTTCTGCCTGTTTC----ACT----ATA----CGT-TTTTTACACATATAa
gi|7 : c--A--C--AG--T--CAGAGTTTGCTAT-GTAGTC--TATAT-AA-------TCTGGCTGTGTC----ACT----ATAA-CTTTG-ATTTTACACATACATTTTTTatgttatcta
gi|8 : cCT--A--A--GG--T--CAGATTCCGGTAT-ACAATC--CATAC-AAAACAGTGTTTGCCTGTTTC----ACT----ATGA-CTTTT-GTTTTGCACATACAttaa
gi|9 : GTCT--CACT--A--C--AA--T--TAGATCTTGCTAT-ATAATA--TATAT-CAAACAGTGTCTGC-----------------------CTTTT-ATTTTACACAAACATTTTTTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTAAATAATATATTGATATATATATATATATATAAGCTCATGTCTGTCATTTATCACTTTGCATTTTATACACAAAACACTTTTGTTA
Unaligned ( gi|10 ): CACATTCTGGGTTGGCTTTGTAGACTGTATACAAAAATACCGTTCTATTTACAATGCAATTTTGTTCAACAAACAGACT
Unaligned ( gi|17 ): TGTTGATATCATCAATGTGTAGGTCCCATACTGTTGCTGTA
Alignments
lowQualScore : 11111
lowQualScore : 55 88 88 44 00000 0 2 33 2 7777 9999 0 4 88 4
lowQualScore : .. .. .. .. ..... . . .. . .... .... . . .. .
lowQualScore : 00 55 55 22 99999 3 9 99 9 7777 4444 8 4 77 4
consensus : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
Reference ( family-5318 ) : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
gi|1 : GGTCT--CACT--A--C--ATTG--TCAGATC-CATTAT-ACAATC--TATAT-TAAACAATGCCTGCCTGTTTC----ACT----ATAATTTTTTTTTTT-ACACATACATTTTTT
gi|11 : aaATTTCGCAGTCATG-TT--TATAT-AAAACAGTGTCTGGCTGTTTCTGTAACTGCCGATAA-CTTT--TTTT-ACACATttaaa
gi|12 : aggtctcGGCCT--CACT--ATAC--A--G--TCTGATTTTGCTAT-AGCATC--TATAT-AAAACAGTGTCTGCCTATTTC----A
gi|13 : GTCT--CTAT--A--C--ACTG--TCACATTTTGCTAT-ATAATCAATATAT-AAAATAGTGTATGCCCGTTT
gi|14 : GGTCT--CACTTCA--C--A--G--TCAGGCTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTTTGCCTGTT
gi|15 : aGGTCT--CACT--ATAC--A--A--TCAGATTCCACTAT-ATAATC--TATAC-AAAACAGTGTCTACCTGTCT
gi|16 : CT--CACTTCA--C--A--G--TCAGACTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTCTGCCTGTTTC----
gi|2 : GGTCTTTCAGT--A--CGCA--G--TCATATTTTGCTAT-AAAATC---ATAT-AAAACAGTGACTGTCTGTTTC----ACA----ATAA-CTTTTAATTT-ACACA
gi|3 : taaGGTCT--CGCT--A--C--A--CACTCAGATTCCACTAT-ATAATC--TATATTAAAAAAGTGTCTGCCTGTTTT----ACT----ATAA-CTATTTTATT-ACACATACAATTTTTaaacaattatttt
gi|4 : aGGTCT--CACT--A--C--G------CAGGTTTTGCTAT-ATCATA--TATAT-GAAACAGTGACTGCCTGTTTC----ACT----ATAA-CTTTTCTTTTCACACATACACTTCTT
gi|5 : CT--CACT--A--C--A--G--TCATAGTTTGCTAT-ATAATC--TCTAT-GAAACATTTTCTGCCTGTTTC----ACT----AT-A-CGTT--TTTT-ACACATATAa
gi|7 : c--A--C--A--G--TCAGAGTTTGCTAT-GTAGTC--TATAT-AA-------TCTGGCTGTGTC----ACT----ATAA-CTTTGATTTT-ACACATACATTTTTTatgttatcta
gi|8 : cCT--A--A--G--G--TCAGATTCCGGTAT-ACAATC--CATAC-AAAACAGTGTTTGCCTGTTTC----ACT----ATGA-CTTTTGTTTT-GCACATACAttaa
gi|9 : GTCT--CACT--A--C--A--A--TTAGATCTTGCTAT-ATAATA--TATAT-CAAACAGTGTCTGC-----------------------CTTTTATTTT-ACACAAACATTTTTTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTAAATAATATATTGATATATATATATATATATAAGCTCATGTCTGTCATTTATCACTTTGCATTTTATACACAAAACACTTTTGTTA
Unaligned ( gi|10 ): CACATTCTGGGTTGGCTTTGTAGACTGTATACAAAAATACCGTTCTATTTACAATGCAATTTTGTTCAACAAACAGACT
Unaligned ( gi|17 ): TGTTGATATCATCAATGTGTAGGTCCCATACTGTTGCTGTA
Alignments
lowQualScore : 11111
lowQualScore : 55 88 88 44 00000 0 2 33 2 7777 9999 0 4 88 4
lowQualScore : .. .. .. .. ..... . . .. . .... .... . . .. .
lowQualScore : 00 55 55 22 99999 3 9 99 9 7777 4444 8 4 77 4
consensus : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
Reference ( family-5318 ) : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
gi|1 : GGTCT--CACT--A--C--ATTG--TCAGATC-CATTAT-ACAATC--TATAT-TAAACAATGCCTGCCTGTTTC----ACT----ATAATTTTTTTTTTT-ACACATACATTTTTT
gi|11 : aaATTTCGCAGTCATG-TT--TATAT-AAAACAGTGTCTGGCTGTTTCTGTAACTGCCGATAA-CTTT--TTTT-ACACATttaaa
gi|12 : aggtctcGGCCT--CACT--ATAC--A--G--TCTGATTTTGCTAT-AGCATC--TATAT-AAAACAGTGTCTGCCTATTTC----A
gi|13 : GTCT--CTAT--A--C--ACTG--TCACATTTTGCTAT-ATAATCAATATAT-AAAATAGTGTATGCCCGTTT
gi|14 : GGTCT--CACTTCA--C--A--G--TCAGGCTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTTTGCCTGTT
gi|15 : aGGTCT--CACT--ATAC--A--A--TCAGATTCCACTAT-ATAATC--TATAC-AAAACAGTGTCTACCTGTCT
gi|16 : CT--CACTTCA--C--A--G--TCAGACTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTCTGCCTGTTTC----
gi|2 : GGTCTTTCAGT--A--CGCA--G--TCATATTTTGCTAT-AAAATC---ATAT-AAAACAGTGACTGTCTGTTTC----ACA----ATAA-CTTTTAATTT-ACACA
gi|3 : taaGGTCT--CGCT--A--C--A--CACTCAGATTCCACTAT-ATAATC--TATATTAAAAAAGTGTCTGCCTGTTTT----ACT----ATAA-CTATTTTATT-ACACATACAATTTTTaaacaattatttt
gi|4 : aGGTCT--CACT--A--C--G------CAGGTTTTGCTAT-ATCATA--TATAT-GAAACAGTGACTGCCTGTTTC----ACT----ATAA-CTTTTCTTTTCACACATACACTTCTT
gi|5 : CT--CACT--A--C--A--G--TCATAGTTTGCTAT-ATAATC--TCTAT-GAAACATTTTCTGCCTGTTTC----ACT----AT-A-CGTT--TTTT-ACACATATAa
gi|7 : c--A--C--A--G--TCAGAGTTTGCTAT-GTAGTC--TATAT-AA-------TCTGGCTGTGTC----ACT----ATAA-CTTTGATTTT-ACACATACATTTTTTatgttatcta
gi|8 : cCT--A--A--G--G--TCAGATTCCGGTAT-ACAATC--CATAC-AAAACAGTGTTTGCCTGTTTC----ACT----ATGA-CTTTTGTTTT-GCACATACAttaa
gi|9 : GTCT--CACT--A--C--A--A--TTAGATCTTGCTAT-ATAATA--TATAT-CAAACAGTGTCTGC-----------------------CTTTTATTTT-ACACAAACATTTTTTc
blockSeqs : TT TC TA GC CTG C AA T TGTA GCCG . TA C
blockSeqs : . TC TA . CAC . . . . . . TT .
blockSeqs : . . . . G . . . . . . TC .
blockSeqs : . . . . G . . . . . . GA .
blockSeqs : . . . . A . . . . . . TG .
blockSeqs : . . . . G . . . . . . TA .
blockSeqs : . . . . G . . . . . . . .
blockSeqs : . . . . G . . . . . . . .
blockSeqs : . . . . G . . . .
blockSeqs : . . . . G . . . .
blockSeqs : . . . A . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqCons : G****
originalCons : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
finalCons : GGTCT--CACT--A--C--AG----TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTAAATAATATATTGATATATATATATATATATAAGCTCATGTCTGTCATTTATCACTTTGCATTTTATACACAAAACACTTTTGTTA
Unaligned ( gi|10 ): CACATTCTGGGTTGGCTTTGTAGACTGTATACAAAAATACCGTTCTATTTACAATGCAATTTTGTTCAACAAACAGACT
Unaligned ( gi|17 ): TGTTGATATCATCAATGTGTAGGTCCCATACTGTTGCTGTA
Alignments
lowQualScore : 11111
lowQualScore : 55 88 88 44 00000 0 2 33 2 7777 9999 0 4 88 4
lowQualScore : .. .. .. .. ..... . . .. . .... .... . . .. .
lowQualScore : 00 55 55 22 99999 3 9 99 9 7777 4444 8 4 77 4
consensus : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
Reference ( family-5318 ) : GGTCT--CACT--A--C--A--G--TCAGATTTCGCTAT-ATAATC--TATAT-AAAACAGTGTCTGCCTGTTTC----ACT----ATAA-CTTTTNTTTT-ACACATACATTTTTT
gi|1 : GGTCT--CACT--A--C--ATTG--TCAGATC-CATTAT-ACAATC--TATAT-TAAACAATGCCTGCCTGTTTC----ACT----ATAATTTTTTTTTTT-ACACATACATTTTTT
gi|11 : aaATTTCGCAGTCATG-TT--TATAT-AAAACAGTGTCTGGCTGTTTCTGTAACTGCCGATAA-CTTT--TTTT-ACACATttaaa
gi|12 : aggtctcGGCCT--CACT--ATAC--A--G--TCTGATTTTGCTAT-AGCATC--TATAT-AAAACAGTGTCTGCCTATTTC----A
gi|13 : GTCT--CTAT--A--C--ACTG--TCACATTTTGCTAT-ATAATCAATATAT-AAAATAGTGTATGCCCGTTT
gi|14 : GGTCT--CACTTCA--C--A--G--TCAGGCTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTTTGCCTGTT
gi|15 : aGGTCT--CACT--ATAC--A--A--TCAGATTCCACTAT-ATAATC--TATAC-AAAACAGTGTCTACCTGTCT
gi|16 : CT--CACTTCA--C--A--G--TCAGACTTTGCTAT-ATACTC--TTTAT-AAAATAGTGTCTGCCTGTTTC----
gi|2 : GGTCTTTCAGT--A--CGCA--G--TCATATTTTGCTAT-AAAATC---ATAT-AAAACAGTGACTGTCTGTTTC----ACA----ATAA-CTTTTAATTT-ACACA
gi|3 : taaGGTCT--CGCT--A--C--A--CACTCAGATTCCACTAT-ATAATC--TATATTAAAAAAGTGTCTGCCTGTTTT----ACT----ATAA-CTATTTTATT-ACACATACAATTTTTaaacaattatttt
gi|4 : aGGTCT--CACT--A--C--G------CAGGTTTTGCTAT-ATCATA--TATAT-GAAACAGTGACTGCCTGTTTC----ACT----ATAA-CTTTTCTTTTCACACATACACTTCTT
gi|5 : CT--CACT--A--C--A--G--TCATAGTTTGCTAT-ATAATC--TCTAT-GAAACATTTTCTGCCTGTTTC----ACT----AT-A-CGTT--TTTT-ACACATATAa
gi|7 : c--A--C--A--G--TCAGAGTTTGCTAT-GTAGTC--TATAT-AA-------TCTGGCTGTGTC----ACT----ATAA-CTTTGATTTT-ACACATACATTTTTTatgttatcta
gi|8 : cCT--A--A--G--G--TCAGATTCCGGTAT-ACAATC--CATAC-AAAACAGTGTTTGCCTGTTTC----ACT----ATGA-CTTTTGTTTT-GCACATACAttaa
gi|9 : GTCT--CACT--A--C--A--A--TTAGATCTTGCTAT-ATAATA--TATAT-CAAACAGTGTCTGC-----------------------CTTTTATTTT-ACACAAACATTTTTTc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTAAATAATATATTGATATATATATATATATATAAGCTCATGTCTGTCATTTATCACTTTGCATTTTATACACAAAACACTTTTGTTA
Unaligned ( gi|10 ): CACATTCTGGGTTGGCTTTGTAGACTGTATACAAAAATACCGTTCTATTTACAATGCAATTTTGTTCAACAAACAGACT
Unaligned ( gi|17 ): TGTTGATATCATCAATGTGTAGGTCCCATACTGTTGCTGTA