lowQualScore : 1 444444 44444444444444 11111111 111111 1 1 1 1 222222222222222222 1 33333333333333333333333333333
lowQualScore : 3 0 5 5 9 2 1 6 555555 2 55 4 888 7 5 44444444444444 0 66666666 222222 777 6 1 4 4 4 3 4 7 999999999999999999 8 3 99999999999999999999999999999 3 6666
lowQualScore : . . . . . . . . ...... . .. . ... . . .............. . ........ ...... ... . . . . . . . . .................. . . ............................. . ....
lowQualScore : 7 1 2 2 8 7 3 0 111111 5 55 1 777 1 7 22222222222222 5 11111111 888888 888 8 9 4 0 1 9 6 2 333333333333333333 9 6 33333333333333333333333333333 6 5555
consensus : TTAAGCTCCCTGCTNAGAAGTATCCAAGTAGGATGCTAGGGGAAATCTAGATCAGAAGACT-ATT-ATATANTAGAGTGT--CNTCTGATGAGCTN--CAAGCTCANCAGTGAAT------GC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AAT-----------------CC-CAAATCTACTGATC----TGAAATCTCAGATTCAGCAAATCCATCACATGT
Reference ( gi|5 ) : TTAAGCTCCCTTCTTATAAGTATCTAAATAGGATACTAGGAGAAATCTAGATCAGAAGACT-TTTTATATACTAGAGTGT--CGTCTGATGAGCTC--CAAGCTTACCAGTGAAT------GC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTTGTTATTTT-TATTGGTGTTTCAACATTGACTGCGAAAATATACTG-------ACGC-----A-AAAATCTACAG-ATTTTT---------AAT-----------------CC-CAAATCTACTGATT----TGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|4 : TTAAACTTTCTAATTATAAGTATCTCGGTAGGATGCTAGGAGAATTCTAGATCAGAAGACT-ATT-ATATACCAGAGTGT--CGTCTGATGAGTTC--TAAGCTCACCAGTGAAT------GC------AATTATAGAATAAAATATG--------AGTA------GAAATAG---GTTATTTTACTTATTTT-TATTGTTGTTTCTATATTGACC-CCAGGTTATACTG-------ACGC-----A-AAAATCTACTG-TTTTTTTTATCA---AAT-----------------CTACTTATCTACTGATT----TGAAATCTCAGATTCTGCAAATCCATCACATGT
gi|3 : gTTAAACTCCCTGCTAAGAAGTATCCAAGTAGGATGCTAGGGGAAATCTAGATAAGAAGACT-ATT-ACATACTAAAGTGC--TTTTTGATGAGCTG--CAAGCTCAACAGTGAATATCACTGA------AATTATAGACTAAAACCTG--------AATA------GAAATAG---GTTATTTTAGTTATTTTCTATTGTACTTTCTACATAAACCGCAAAAATATATTG-------ACGC-----A-AAAATCTACTG-ATTTTT---------AAT-----------------CC-CGAATCTACTGATC----TGAAAGCTCAGATTGAGCAAATCTATCACATGT
gi|8 : gTTAAGCTCCTTGCTTATAAGTATCTAAATAGGATGCTAGAAGAAATCTAGAACAGAAGACC-ATT---ATACT-----GT--CGTCTCTTGAGCTC--CAAGCTCACCAGTGAAT------GC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TA---ATGTTTCTACGTTGACTGC----------------------------A-AAAATCTACTG-ATTTTT---------AAT-----------------CC-CAAATCTACT------------------GACTCAGCAAATCCATCACATGT
gi|2 : gTTAAGTTTCCTGTTAAGAAATATCCAACTAGGATGCTAGGGGATATCTAAACCAGAAAACT-AGT-ATATAATAGAGTAC--CTTCCGATGAGCTG--CAATGTCAACAGTGAAT------ACCAGTGAAATTACAGAACAAAACATGAATACAAAAATA------GAAATAG---GTTATTTTAGTTA-TTT-CATTGTCG-TTCTTCGTTGACAGC-AAAATCTACTG-------ATACTTTTTATCAAATCTACTGTGTTTTTTA-------AAT-----------------CC-TAAATCTACTGATC----TGAAATCCCAGATTCAATAAATCCACCACATGTa
gi|1 : gTTAAGCTCCCTGCTAAGAAGTATCCATGTAAGATGCAAGGGTAAATGAAAATCAGAAGACT-----ACATAATAGA-TGC--ATTCTAATGAGCTG--CAAGTCCAACAGTGAAT------GCCTCGGAAATTGTAGAATAAAATATT--------GATA------CAAATAGAAAGATAG----GTTATTTT-TATTGTTGTTTTAACTTTGACCGCAAAAATCTACTG-------ACAC-----A-AATTTCTACTG-ATTTTTTTTTTATCAAATCTTCTGTTTTTTTTTATCT-CAAATCTGCTGATC----TGAAATCTCAGATTCAGCAAATCCATCACATGTa
gi|7 : TTAAGCTCC----TTAGAAGTATCCAACTAGGATGTCAGGAGAAATCTAGATCTGAAGAC--CATTATATAATAGAGTGC--CTTCTGATGAGCTG--CAAGCTCAACAGTGAAT--------------AAC-----ACTGAA--ATT--------AG-A------AAAAGAG---ATTATCTGAGTTATTTT-TATTGTCGTTTCTTCATCGACTGCAAAAATCTACTGCTTTTTTAT-C--------AAATTCAC-T-ATTTTT---------AAT-----------------CC-CAAATCTACCGAAC----TGAAATCTCATATa
gi|6 : TTAAACTCCATGCTGAGAAGTATTCAAATACGATGTCAGGGGAA-TCTAGACCAACA---------ATAGAGTGGATTTTGATGTATGATGAGCTT--CAAGCTCAACAG--------------------ATTAAAGAATAAAACATA--------AATACAAATAGAAATAG---ATTATTTTAGTTATTTT--ATTGTCGTTTCTACATTGACCGCAAAAATCTACTG----------------------T--------TTTTT---------AAT-----------------TC-TCAATCTACTAATC----TAAAATCTCAGGTTCAGCAAATCCATAACATGTg
gi|10 : TTAA-CTCCCCGCTAA-AAGTATCCAAATGGGATGCCAGGGGAAATCTAGACCAGAAGACTATTATATATAACAGAGTGT--CTTGTGATGAGCTCTACAAGCTATTCAGTGAAT------GTTACTGAAATTACAGAATAAAACTTG--------AATA------GAAATAG---GTTAATTTAATTA-TTT-CAT---TATTTCTACGTTGa
gi|13 : TTAATCTCCCTGCTTATAAGTAGCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGAC--TATTATATACTAGAtagtagcaaaa
gi|15 : gACTAGAGTGT--CGTCTGATGAGCTT--CAAGCTCACCAGTGAAT------GC------AATTACAGAATAAAA
gi|9 : GTGT--CATCTGATGAGCTC--CAAGCTCATCAGTGAAA------GC------AATTATAGAATAAAACATG--------AGTA------GAA-TAG---GTTATTTTAGTTATTTT-TATTGTTGTTTCTACACTGACCGCAAAAATTTACTG-------ACAC-----A-AAAATCTACTG-ATTTTT---------AAT-----------------CC-CGAATCTACTGATT----TAAAATCTCAGATTCAGCAAATCCATCACATGT
gi|12 : TGACCACAAAAATATATTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AAT-----------------CG-CAAATCTACTGATC----TGAAAGCTCAGATTCAGCAAATCTATCAAATGT
gi|14 : AATCTACTG-ATTTTT---------ACT-----------------CC-CAAATTTACTGATT----TGAAATCTCAGATTCAGCAAATCCATCACAT
gi|11 : TCTACTG-TTTTTTTC-------AAT-----------------CC-TAAATCTACTGATTGATCTGAGATCTCAGATTCATTAAAACCATTACATGT
gi|16 : tatttttttatcaaatctactgctcattttttgttgttaacaaatcgatctactgtgtttttttgtcagtAAATCTACTAATT----TGCAATCTCAGATTCAGCAAATCCATCACATataaaaatgttagtttaaaacgtaagaactaaatgttataa
gi|17 : TGCCGATT----TGAAATCTCAGATTCAGCAAATCCATCACATG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ATATTACAAAGTAAAAAGTACATAGCACAAT
Alignments
lowQualScore : 333333333333333 11111111 111111 2222222222222222222 111 11111111 22222222222222222 11111111
lowQualScore : 2 1 5 3 7777 2 55 1 55 1 1 333333333333333 44444444 111111 777 0 4 3 2 1 4444444444444444444 555 88888888 33333333333333333 11111111 6666
lowQualScore : . . . . .... . .. . .. . . ............... ........ ...... ... . . . . . ................... ... ........ ................. ........ ....
lowQualScore : 3 0 0 0 8888 3 00 0 00 0 0 999999999999999 55555555 555555 000 8 0 9 1 6 7777777777777777777 222 88888888 33333333333333333 22222222 1111
consensus : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
Reference ( family-5162 ) : TTAAGCTCCCTGCTNAGAAGTATCCAAGTAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CNTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|1 : TTAAGCTCCCTGCTAAGAAGTATCCATGTAAGATGCAAGGGTAAATGAAAATCAGAAGACTAC------ATAATAGA-TGC--ATTCTAATGAG--CTGCAAGTCCAACAGTGAA------TGCCTCGGAAATTGTAGAATAAAATATT--------GATA------CAAATAGAAAGATA----GGTTATTTT-TATTGTTGTTTTAACTTTGACCGCAAAAATCTACTG-------ACAC-----A-AATTTCTACTG-ATTTTTTTTTTATCAAATCTTCTGTTTTTTTTTATCTCAA--------ATCTGCTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|10 : TTAA-CTCCCCGCTAA-AAGTATCCAAATGGGATGCCAGGGGAAATCTAGACCAGAAGACTATTAT-ATATAACAGAGTGT--CTTGTGATGAGCTCTACAAGCTATTCAGTGAA------TGTTACTGAAATTACAGAATAAAACTTG--------AATA------GAAATAG---GTTAATTTAATTA-TTT-CATT---ATTTCTACGTTGa
gi|11 : TCTACTG-TTTTTTTC-------AATC-----------------CTAA--------ATCTACTGATTGATCTGAGATCTCAGATTCATTAAAACCATTACATGTtagtagcaaaa
gi|12 : tatttttttatcaaatctactgctcattttttgttgttaacaaatcgatctactgtgtttttttgtcagtTGACCACAAAAATATATTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------GCAA--------ATCTACTGAT----CTGAAAGCTCAGATTCAGCAAATCTATCAAATGTataaaaatgttagtttaaaacgtaagaactaaatgttataa
gi|13 : TTAATCTCCCTGCTTATAAGTAGCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACTAT--T-ATATACTAGA
gi|14 : gAATCTACTG-ATTTTT---------ACTC-----------------CCAA--------ATTTACTGAT----TTGAAATCTCAGATTCAGCAAATCCATCACAT
gi|15 : ACTAGAGTGT--CGTCTGATGAG--CTTCAAGCTCACCAGTGAA------TGC------AATTACAGAATAAAA
gi|16 : AA--------ATCTACTAAT----TTGCAATCTCAGATTCAGCAAATCCATCACAT
gi|17 : TGCCGAT----TTGAAATCTCAGATTCAGCAAATCCATCACATG
gi|2 : taTTAAGTTTCCTGTTAAGAAATATCCAACTAGGATGCTAGGGGATATCTAAACCAGAAAACTAG--T-ATATAATAGAGTAC--CTTCCGATGAG--CTGCAATGTCAACAGTGAA------TACCAGTGAAATTACAGAACAAAACATGAATACAAAAATA------GAAATAG---GTTATTTTAGTTA-TTT-CATTGTCG-TTCTTCGTTGACAGC-AAAATCTACTG-------ATACTTTTTATCAAATCTACTGTGTTTTTTA-------AATC-----------------CTAA--------ATCTACTGAT----CTGAAATCCCAGATTCAATAAATCCACCACATGT
gi|3 : gTTAAACTCCCTGCTAAGAAGTATCCAAGTAGGATGCTAGGGGAAATCTAGATAAGAAGACTAT--T-ACATACTAAAGTGC--TTTTTGATGAG--CTGCAAGCTCAACAGTGAATATCACTGA------AATTATAGACTAAAACCTG--------AATA------GAAATAG---GTTATTTTAGTTATTTTCTATTGTACTTTCTACATAAACCGCAAAAATATATTG-------ACGC-----A-AAAATCTACTG-A-TTTTT--------AATC-----------------CCGA--------ATCTACTGAT----CTGAAAGCTCAGATTGAGCAAATCTATCACATGTa
gi|4 : gTTAAACTTTCTAATTATAAGTATCTCGGTAGGATGCTAGGAGAATTCTAGATCAGAAGACTAT--T-ATATACCAGAGTGT--CGTCTGATGAG--TTCTAAGCTCACCAGTGAA------TGC------AATTATAGAATAAAATATG--------AGTA------GAAATAG---GTTATTTTACTTATTTT-TATTGTTGTTTCTATATTGACC-CCAGGTTATACTG-------ACGC-----A-AAAATCTACTG-TTTTTTT--------TAT-------------------CAAATCTACTTATCTACTGAT----TTGAAATCTCAGATTCTGCAAATCCATCACATGT
gi|5 : gTTAAGCTCCCTTCTTATAAGTATCTAAATAGGATACTAGGAGAAATCTAGATCAGAAGACTTT--TTATATACTAGAGTGT--CGTCTGATGAG--CTCCAAGCTTACCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTTGTTATTTT-TATTGGTGTTTCAACATTGACTGCGAAAATATACTG-------ACGC-----A-AAAATCTACAG-A-TTTTT--------AATC-----------------CCAA--------ATCTACTGAT----TTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|6 : TTAAACTCCATGCTGAGAAGTATTCAAATACGATGTCAGGGGAA-TCTAGACCAACA----------ATAGAGTGGATTTTGATGTATGATGAG--CTTCAAGCTCAACAG--------------------ATTAAAGAATAAAACATA--------AATACAAATAGAAATAG---ATTATTTTAGTTATTTT--ATTGTCGTTTCTACATTGACCGCAAAAATCTACTG-------------------------------TTTTTT--------AATT-----------------CTCA--------ATCTACTAAT----CTAAAATCTCAGGTTCAGCAAATCCATAACATGT
gi|7 : TTAAGCTCC----TTAGAAGTATCCAACTAGGATGTCAGGAGAAATCTAGATCTGAAGACCAT--T-ATATAATAGAGTGC--CTTCTGATGAG--CTGCAAGCTCAACAGTGAA------T--------AAC-----ACTGAA--ATT--------AG-A------AAAAGAG---ATTATCTGAGTTATTTT-TATTGTCGTTTCTTCATCGACTGCAAAAATCTACTGCTTTTTTAT-C--------AAATTCACTA---TTTTT--------AATC-----------------CCAA--------ATCTACCGAA----CTGAAATCTCATATa
gi|8 : TTAAGCTCCTTGCTTATAAGTATCTAAATAGGATGCTAGAAGAAATCTAGAACAGAAGACCAT--T-ATAC-------TGT--CGTCTCTTGAG--CTCCAAGCTCACCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TAAT---GTTTCTACGTTGACTGCAAAAATCTACTG-------A------------------------TTTTT--------AATC-----------------CCAA--------ATCTACT------------------GACTCAGCAAATCCATCACATGTg
gi|9 : gGTGT--CATCTGATGAG--CTCCAAGCTCATCAGTGAA------AGC------AATTATAGAATAAAACATG--------AGTA------GAA-TAG---GTTATTTTAGTTATTTT-TATTGTTGTTTCTACACTGACCGCAAAAATTTACTG-------ACAC-----A-AAAATCTACTG-A-TTTTT--------AATC-----------------CCGA--------ATCTACTGAT----TTAAAATCTCAGATTCAGCAAATCCATCACATGTa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACAAAGTAAAAAGTACATAGCACAAT
Alignments
lowQualScore : 333333333333333 11111111 111111 2222222222222222222 111 11111111 22222222222222222 11111111
lowQualScore : 2 1 5 0 7777 2 55 2 55 1 1 333333333333333 44444444 111111 777 0 4 3 2 1 4444444444444444444 555 88888888 33333333333333333 11111111 6666
lowQualScore : . . . . .... . .. . .. . . ............... ........ ...... ... . . . . . ................... ... ........ ................. ........ ....
lowQualScore : 3 0 0 3 8888 3 00 8 00 0 0 999999999999999 55555555 555555 000 8 0 9 1 6 7777777777777777777 222 88888888 33333333333333333 22222222 1111
consensus : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
Reference ( family-5162 ) : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|1 : TTAAGCTCCCTGCTAAGAAGTATCCATGTAAGATGCAAGGGTAAATGAAAATCAGAAGACTAC------ATAATAGA-TGC--ATTCTAATGAG--CTGCAAGTCCAACAGTGAA------TGCCTCGGAAATTGTAGAATAAAATATT--------GATA------CAAATAGAAAGATA----GGTTATTTT-TATTGTTGTTTTAACTTTGACCGCAAAAATCTACTG-------ACAC-----A-AATTTCTACTG-ATTTTTTTTTTATCAAATCTTCTGTTTTTTTTTATCTCAA--------ATCTGCTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|10 : TTAA-CTCCCCGCTAA-AAGTATCCAAATGGGATGCCAGGGGAAATCTAGACCAGAAGACTATTAT-ATATAACAGAGTGT--CTTGTGATGAGCTCTACAAGCTATTCAGTGAA------TGTTACTGAAATTACAGAATAAAACTTG--------AATA------GAAATAG---GTTAATTTAATTA-TTT-CATT---ATTTCTACGTTGa
gi|11 : TCTACTG-TTTTTTTC-------AATC-----------------CTAA--------ATCTACTGATTGATCTGAGATCTCAGATTCATTAAAACCATTACATGTtagtagcaaaa
gi|12 : tatttttttatcaaatctactgctcattttttgttgttaacaaatcgatctactgtgtttttttgtcagtTGACCACAAAAATATATTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------GCAA--------ATCTACTGAT----CTGAAAGCTCAGATTCAGCAAATCTATCAAATGTataaaaatgttagtttaaaacgtaagaactaaatgttataa
gi|13 : TTAATCTCCCTGCTTATAAGTAGCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACTAT--T-ATATACTAGA
gi|14 : gAATCTACTG-ATTTTT---------ACTC-----------------CCAA--------ATTTACTGAT----TTGAAATCTCAGATTCAGCAAATCCATCACAT
gi|15 : ACTAGAGTGT--CGTCTGATGAG--CTTCAAGCTCACCAGTGAA------TGC------AATTACAGAATAAAA
gi|16 : AA--------ATCTACTAAT----TTGCAATCTCAGATTCAGCAAATCCATCACAT
gi|17 : TGCCGAT----TTGAAATCTCAGATTCAGCAAATCCATCACATG
gi|2 : taTTAAGTTTCCTGTTAAGAAATATCCAACTAGGATGCTAGGGGATATCTAAACCAGAAAACTAG--T-ATATAATAGAGTAC--CTTCCGATGAG--CTGCAATGTCAACAGTGAA------TACCAGTGAAATTACAGAACAAAACATGAATACAAAAATA------GAAATAG---GTTATTTTAGTTA-TTT-CATTGTCG-TTCTTCGTTGACAGC-AAAATCTACTG-------ATACTTTTTATCAAATCTACTGTGTTTTTTA-------AATC-----------------CTAA--------ATCTACTGAT----CTGAAATCCCAGATTCAATAAATCCACCACATGT
gi|3 : gTTAAACTCCCTGCTAAGAAGTATCCAAGTAGGATGCTAGGGGAAATCTAGATAAGAAGACTAT--T-ACATACTAAAGTGC--TTTTTGATGAG--CTGCAAGCTCAACAGTGAATATCACTGA------AATTATAGACTAAAACCTG--------AATA------GAAATAG---GTTATTTTAGTTATTTTCTATTGTACTTTCTACATAAACCGCAAAAATATATTG-------ACGC-----A-AAAATCTACTG-A-TTTTT--------AATC-----------------CCGA--------ATCTACTGAT----CTGAAAGCTCAGATTGAGCAAATCTATCACATGTa
gi|4 : gTTAAACTTTCTAATTATAAGTATCTCGGTAGGATGCTAGGAGAATTCTAGATCAGAAGACTAT--T-ATATACCAGAGTGT--CGTCTGATGAG--TTCTAAGCTCACCAGTGAA------TGC------AATTATAGAATAAAATATG--------AGTA------GAAATAG---GTTATTTTACTTATTTT-TATTGTTGTTTCTATATTGACC-CCAGGTTATACTG-------ACGC-----A-AAAATCTACTG-TTTTTTT--------TAT-------------------CAAATCTACTTATCTACTGAT----TTGAAATCTCAGATTCTGCAAATCCATCACATGT
gi|5 : gTTAAGCTCCCTTCTTATAAGTATCTAAATAGGATACTAGGAGAAATCTAGATCAGAAGACTTT--TTATATACTAGAGTGT--CGTCTGATGAG--CTCCAAGCTTACCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTTGTTATTTT-TATTGGTGTTTCAACATTGACTGCGAAAATATACTG-------ACGC-----A-AAAATCTACAG-A-TTTTT--------AATC-----------------CCAA--------ATCTACTGAT----TTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|6 : TTAAACTCCATGCTGAGAAGTATTCAAATACGATGTCAGGGGAA-TCTAGACCAACA----------ATAGAGTGGATTTTGATGTATGATGAG--CTTCAAGCTCAACAG--------------------ATTAAAGAATAAAACATA--------AATACAAATAGAAATAG---ATTATTTTAGTTATTTT--ATTGTCGTTTCTACATTGACCGCAAAAATCTACTG-------------------------------TTTTTT--------AATT-----------------CTCA--------ATCTACTAAT----CTAAAATCTCAGGTTCAGCAAATCCATAACATGT
gi|7 : TTAAGCTCC----TTAGAAGTATCCAACTAGGATGTCAGGAGAAATCTAGATCTGAAGACCAT--T-ATATAATAGAGTGC--CTTCTGATGAG--CTGCAAGCTCAACAGTGAA------T--------AAC-----ACTGAA--ATT--------AG-A------AAAAGAG---ATTATCTGAGTTATTTT-TATTGTCGTTTCTTCATCGACTGCAAAAATCTACTGCTTTTTTAT-C--------AAATTCACTA---TTTTT--------AATC-----------------CCAA--------ATCTACCGAA----CTGAAATCTCATATa
gi|8 : TTAAGCTCCTTGCTTATAAGTATCTAAATAGGATGCTAGAAGAAATCTAGAACAGAAGACCAT--T-ATAC-------TGT--CGTCTCTTGAG--CTCCAAGCTCACCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TAAT---GTTTCTACGTTGACTGCAAAAATCTACTG-------A------------------------TTTTT--------AATC-----------------CCAA--------ATCTACT------------------GACTCAGCAAATCCATCACATGTg
gi|9 : gGTGT--CATCTGATGAG--CTCCAAGCTCATCAGTGAA------AGC------AATTATAGAATAAAACATG--------AGTA------GAA-TAG---GTTATTTTAGTTATTTT-TATTGTTGTTTCTACACTGACCGCAAAAATTTACTG-------ACAC-----A-AAAATCTACTG-A-TTTTT--------AATC-----------------CCGA--------ATCTACTGAT----TTAAAATCTCAGATTCAGCAAATCCATCACATGTa
blockSeqs : T A T TAT A GA T CT A T TGTTACTGA AATACAAA CAAATA . C C G A ATACTTTTTATC TGT C . ATCTACTT TGAT
blockSeqs : G T G TT C . G . T C TACCAGTGA . . . . A G C CTTTTTTATC TT A . . .
blockSeqs : A A G T C . T . G A TATCACTGA . . . . T A A ACGCAA AT . . . .
blockSeqs : A A T T A . T . G A TGC . . . . T A A ACGCAA AT . . . .
blockSeqs : G T T T C . G . C C TGC . . . . C A A ACGCAA TT . . . .
blockSeqs : A T G T C . G . C C TGC . . . . C A C ACGCAA A . . . .
blockSeqs : G G G T C . G . T A TGC . . . . T A C ACACAA A . . . .
blockSeqs : G T T T G . T . G A AGC . . . . . G C A T . . . .
blockSeqs : . T . . A . G . C C T . . . . . A T . A . . . .
blockSeqs : . . A . C T . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : T*** TGC************ *** AT* ******** *****************
originalCons : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
finalCons : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTATT---ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAATGC------------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTGAT-TTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACAAAGTAAAAAGTACATAGCACAAT
Alignments
lowQualScore : 333333333333333 11111111 111111 2222222222222222222 111 11111111 22222222222222222 11111111
lowQualScore : 2 1 5 0 7777 2 55 2 55 1 1 333333333333333 44444444 111111 777 0 4 3 2 1 4444444444444444444 555 88888888 33333333333333333 11111111 6666
lowQualScore : . . . . .... . .. . .. . . ............... ........ ...... ... . . . . . ................... ... ........ ................. ........ ....
lowQualScore : 3 0 0 3 8888 3 00 8 00 0 0 999999999999999 55555555 555555 000 8 0 9 1 6 7777777777777777777 222 88888888 33333333333333333 22222222 1111
consensus : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
Reference ( family-5162 ) : TTAAGCTCCCTGCTNAGAAGTATCCAAATAGGATGCTAGGGGAAATCTAGATCAGAAGACTAT--T-ATATANTAGAGTGT--CGTCTGATGAG--CTNCAAGCTCANCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TATTGTCGTTTCTACGTTGACCGCAAAAATCTACTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------CCAA--------ATCTACTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|1 : TTAAGCTCCCTGCTAAGAAGTATCCATGTAAGATGCAAGGGTAAATGAAAATCAGAAGACTAC------ATAATAGA-TGC--ATTCTAATGAG--CTGCAAGTCCAACAGTGAA------TGCCTCGGAAATTGTAGAATAAAATATT--------GATA------CAAATAGAAAGATA----GGTTATTTT-TATTGTTGTTTTAACTTTGACCGCAAAAATCTACTG-------ACAC-----A-AATTTCTACTG-ATTTTTTTTTTATCAAATCTTCTGTTTTTTTTTATCTCAA--------ATCTGCTGAT----CTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|10 : TTAA-CTCCCCGCTAA-AAGTATCCAAATGGGATGCCAGGGGAAATCTAGACCAGAAGACTATTAT-ATATAACAGAGTGT--CTTGTGATGAGCTCTACAAGCTATTCAGTGAA------TGTTACTGAAATTACAGAATAAAACTTG--------AATA------GAAATAG---GTTAATTTAATTA-TTT-CATT---ATTTCTACGTTGa
gi|11 : TCTACTG-TTTTTTTC-------AATC-----------------CTAA--------ATCTACTGATTGATCTGAGATCTCAGATTCATTAAAACCATTACATGTtagtagcaaaa
gi|12 : tatttttttatcaaatctactgctcattttttgttgttaacaaatcgatctactgtgtttttttgtcagtTGACCACAAAAATATATTG-------ACGC-----A-AAAATCTACTG-ATTTTTT--------AATC-----------------GCAA--------ATCTACTGAT----CTGAAAGCTCAGATTCAGCAAATCTATCAAATGTataaaaatgttagtttaaaacgtaagaactaaatgttataa
gi|13 : TTAATCTCCCTGCTTATAAGTAGCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACTAT--T-ATATACTAGA
gi|14 : gAATCTACTG-ATTTTT---------ACTC-----------------CCAA--------ATTTACTGAT----TTGAAATCTCAGATTCAGCAAATCCATCACAT
gi|15 : ACTAGAGTGT--CGTCTGATGAG--CTTCAAGCTCACCAGTGAA------TGC------AATTACAGAATAAAA
gi|16 : AA--------ATCTACTAAT----TTGCAATCTCAGATTCAGCAAATCCATCACAT
gi|17 : TGCCGAT----TTGAAATCTCAGATTCAGCAAATCCATCACATG
gi|2 : taTTAAGTTTCCTGTTAAGAAATATCCAACTAGGATGCTAGGGGATATCTAAACCAGAAAACTAG--T-ATATAATAGAGTAC--CTTCCGATGAG--CTGCAATGTCAACAGTGAA------TACCAGTGAAATTACAGAACAAAACATGAATACAAAAATA------GAAATAG---GTTATTTTAGTTA-TTT-CATTGTCG-TTCTTCGTTGACAGC-AAAATCTACTG-------ATACTTTTTATCAAATCTACTGTGTTTTTTA-------AATC-----------------CTAA--------ATCTACTGAT----CTGAAATCCCAGATTCAATAAATCCACCACATGT
gi|3 : gTTAAACTCCCTGCTAAGAAGTATCCAAGTAGGATGCTAGGGGAAATCTAGATAAGAAGACTAT--T-ACATACTAAAGTGC--TTTTTGATGAG--CTGCAAGCTCAACAGTGAATATCACTGA------AATTATAGACTAAAACCTG--------AATA------GAAATAG---GTTATTTTAGTTATTTTCTATTGTACTTTCTACATAAACCGCAAAAATATATTG-------ACGC-----A-AAAATCTACTG-A-TTTTT--------AATC-----------------CCGA--------ATCTACTGAT----CTGAAAGCTCAGATTGAGCAAATCTATCACATGTa
gi|4 : gTTAAACTTTCTAATTATAAGTATCTCGGTAGGATGCTAGGAGAATTCTAGATCAGAAGACTAT--T-ATATACCAGAGTGT--CGTCTGATGAG--TTCTAAGCTCACCAGTGAA------TGC------AATTATAGAATAAAATATG--------AGTA------GAAATAG---GTTATTTTACTTATTTT-TATTGTTGTTTCTATATTGACC-CCAGGTTATACTG-------ACGC-----A-AAAATCTACTG-TTTTTTT--------TAT-------------------CAAATCTACTTATCTACTGAT----TTGAAATCTCAGATTCTGCAAATCCATCACATGT
gi|5 : gTTAAGCTCCCTTCTTATAAGTATCTAAATAGGATACTAGGAGAAATCTAGATCAGAAGACTTT--TTATATACTAGAGTGT--CGTCTGATGAG--CTCCAAGCTTACCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTTGTTATTTT-TATTGGTGTTTCAACATTGACTGCGAAAATATACTG-------ACGC-----A-AAAATCTACAG-A-TTTTT--------AATC-----------------CCAA--------ATCTACTGAT----TTGAAATCTCAGATTCAGCAAATCCATCACATGT
gi|6 : TTAAACTCCATGCTGAGAAGTATTCAAATACGATGTCAGGGGAA-TCTAGACCAACA----------ATAGAGTGGATTTTGATGTATGATGAG--CTTCAAGCTCAACAG--------------------ATTAAAGAATAAAACATA--------AATACAAATAGAAATAG---ATTATTTTAGTTATTTT--ATTGTCGTTTCTACATTGACCGCAAAAATCTACTG-------------------------------TTTTTT--------AATT-----------------CTCA--------ATCTACTAAT----CTAAAATCTCAGGTTCAGCAAATCCATAACATGT
gi|7 : TTAAGCTCC----TTAGAAGTATCCAACTAGGATGTCAGGAGAAATCTAGATCTGAAGACCAT--T-ATATAATAGAGTGC--CTTCTGATGAG--CTGCAAGCTCAACAGTGAA------T--------AAC-----ACTGAA--ATT--------AG-A------AAAAGAG---ATTATCTGAGTTATTTT-TATTGTCGTTTCTTCATCGACTGCAAAAATCTACTGCTTTTTTAT-C--------AAATTCACTA---TTTTT--------AATC-----------------CCAA--------ATCTACCGAA----CTGAAATCTCATATa
gi|8 : TTAAGCTCCTTGCTTATAAGTATCTAAATAGGATGCTAGAAGAAATCTAGAACAGAAGACCAT--T-ATAC-------TGT--CGTCTCTTGAG--CTCCAAGCTCACCAGTGAA------TGC------AATTATAGAATAAAACATG--------AGTA------GAAATAG---GTTATTTTAGTTATTTT-TAAT---GTTTCTACGTTGACTGCAAAAATCTACTG-------A------------------------TTTTT--------AATC-----------------CCAA--------ATCTACT------------------GACTCAGCAAATCCATCACATGTg
gi|9 : gGTGT--CATCTGATGAG--CTCCAAGCTCATCAGTGAA------AGC------AATTATAGAATAAAACATG--------AGTA------GAA-TAG---GTTATTTTAGTTATTTT-TATTGTTGTTTCTACACTGACCGCAAAAATTTACTG-------ACAC-----A-AAAATCTACTG-A-TTTTT--------AATC-----------------CCGA--------ATCTACTGAT----TTAAAATCTCAGATTCAGCAAATCCATCACATGTa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACAAAGTAAAAAGTACATAGCACAAT