lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 1111 1 44444444444444444 22222222222222222222222222222222222222 1111111 11111111 8888888888888888888888888888888888888888888888888888888888888888888888888 1 1 11 1111 111 22222 222222 1 555555555 00000000000000000000000000 11 6666666666666666666666 222 55555555555555555555555 1 1 1 1
lowQualScore : 33 0 666666 33 8 444 33 2 6666 33 2 2 2 777777 3 5 99999999999999999 33 44 33 555 44 2 888888 3 77777777777777777777777777777777777777 5 2 555 9999999 44 3 44444444 0000000000000000000000000000000000000000000000000000000000000000000000000 666 0 6 55 55 8 8888 4 11 4 0 0 5 6 6 2 22 888 77 11 1 1 2222 777 0 55555 2 888888 2 0 333333333 33333333333333333333333333 88 5555555555555555555555 333 1 6 88888888888888888888888 3 3 5 5
lowQualScore : .. . ...... .. . ... .. . .... .. . . . ...... . . ................. .. .. .. ... .. . ...... . ...................................... . . ... ....... .. . ........ ......................................................................... ... . . .. .. . .... . .. . . . . . . . .. ... .. .. . . .... ... . ..... . ...... . . ......... .......................... .. ...................... ... . . ....................... . . . .
lowQualScore : 22 7 888888 11 3 111 22 4 3333 44 5 7 7 777777 3 3 22222222222222222 99 55 99 444 33 3 888888 1 99999999999999999999999999999999999999 5 0 888 3333333 66 3 99999999 5555555555555555555555555555555555555555555555555555555555555555555555555 444 5 1 55 55 0 5555 0 99 0 2 2 0 7 7 2 77 000 99 66 7 4 1111 000 2 00000 5 888888 5 0 333333333 77777777777777777777777777 33 0000000000000000000000 333 0 7 33333333333333333333333 3 3 0 0
consensus : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACA---T--A-ATACAAACATGTTA--A-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---GT--T----A----AA--CATTGTTATAAGCA--GTATC--TTG-AATGTGGCATATAC------ATAA-T-----------A----------GAAT---AT-------TNTATC---TTCAG--TTATTTT--GCAT-CA-------TCA--------------T------------T------TTC---A--A-------------C---------------AATAA---ATGTAACANGCAACTGATT--GCA--AC-ATTT----T-TTCAAT-TTTTGAAGACATAAGTAT-TCGGAATTTGTTCATATT-ACANTGACAAAAAGTA--TTTTTGTGGAA--TATATACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTCNTCTACCTCATTTGAT------GTACATAGTTTGCAAANCCGTAA-GTTCTTATGATT---------CATTACGGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCA------TGATTATAAGTTAGTTTA---TATTCTATGTGAAAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
Reference ( gi|2 ) : TAATTGTG--ATATA------AGGCC--TCAAGCCCACAACACA---T--A-ATACAAACATGTTA--T-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----AA--CATTGTTATAAATA--ATATT--TTG-GATATGGCATGTAC------ATAA-T-----------A----------GACT---GT-------TTTGTC---TTCAA--TGACTTT--GCAT-CG-------TCA--------------T------------T------TTC---A--A-------------C---------------AATAA---ATGTAAGATGCAACTGATT--GCA--ACTATTT----T-TTCAAT-TTTTGAAGACATAAGTAT-TCAAAATTTGTTCAGATT-ACAATGACAAAAAGTA--TTTTTGTGGAA--TATACATCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCA------TGATTATAAGTTAGTTTA---TATTCTATATGAAAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTGGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCCAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|3 : TAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACA---T--A-ATACAAACATGTTA--T-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----AA--CATTGTTATAAATA--ATATT--TTG-GATATGGCATATAC------ATAA-T-----------A----------GACT---GT-------TTTGTC---TTCAA--TGACTTT--GCAT-CG-------TCA--------------T------------T------TTC---A--A-------------C---------------AATAA---ATGTAAGATGCAACTGATT--GCA--ACTATTT----T-TTCAAT-TTTTGAAGACATAAGTAT-TCAAAATTTGTTCAGATT-ACAATGACAAAAAGTA--TTTTTGTGGAA--TATACACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCA------TGATTATAAGTTAGTTTA---TATTCTATGTGAAAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|1 : TAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACA---T--A-ATACAAACATGTTA--T-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----AA--CATTGTTATAAATA--ATATT--TTG-GATATGGCATATAC------ATAA-T-----------A----------GACT---GT-------TTTGTC---TTCAA--TGACTTT--GCAT-CG-------TCA--------------T------------T------TTC---A--A-------------C---------------AATAA---ATGTAAGATGCAACTGATT--GCA--ACTATTT----T-TTCAAT-TTTTGAAGACATAAGTAT-TCAAAATTTGTTCAGATT-ACAATGACAAAAAGTA--TTTTTGTGGAA--TATACACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCA------TGATTATAAGTTAGTTTA---TATTCTATGTGAAAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|5 : ATTGTG--ATA--------AGGCC--TCCAGCCCACAACACA---TGTA-ATACAAATATGTTA--A-TTATGA--AAT-TGTACACAATGT-AAA-AATGCATTTGAAA------TCAGAT-GTCAGCAATAATTC---GCAAT----AAG--AA--CATTGTTTTAAGTA--ATACT--TTG-AAGATGGCATATAC------AT--------------------------GAAT---AT-------TTAATC---TTCAG--TTTCTTT--GCAT-CA-------TCATCAATTCCTTACATT------------T------CTC---A--AATGTG--------T---------------AATAA---ATGTACCTGGCAACTAACT--GCA--AC-AATT----T-TTCATT-TCTTGAAG----AAGTAT-TTGAAATTTATTCATATT-ACATTGACAGAAA-TA--TGTTTGTGGAA--TATATACCCCACGAAGATATTAAACAGTAAGCTGTACA-----AAATAATAAAAAGTGACGCTCGTCCTCTACCTCATTTGATGTACCGGTACATAGTTTGCAAACCCATAATGTTt
gi|6 : aagatacaaaatacaaagtttATTGTG--AAATA------AGGCC--TCCAGCCCACAACACA---T--A-ATACAAACATGTTA--A-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATCTAAAT------TAAGAT-GTCAACAATAAATT---ATTGT----A----AAATCATTGTTATAAGTA--GTATC--TTG-AATGTGGCATATAC------ATAA-TATTGTATATAAA----------GAAT---AT-------TGTATC---TTCAG--TTATTTT--GTAT-CA-------TCA--------------T------------CAA----TTC---ATTA-------------CGTTTCTCGAATGCGTAATAC---ATGTAACATGCAACTGATT--GCA--ACAATTTCTCAT-TTT--T-TTTTAAAAACATAAGTAT-TCGGAATTTGTTCATAAT-AGAATGAC-AAAAGTA--CTTTTGTGGAA--TATATACCCCACAAAGAT----AAGAGTAGGCTG
gi|8 : acaagctacaaagtttATTATG--ATATA------AGGCC--TCCAACCTACAACACA---T--A-ATACAAACATGTAA--A-TTATGA--AAT-TGTACACGATGT-AAAGAATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----AG--CATTGTTCTAAGCA--GTATC--CTG-GATGTGGCGTATAC------ATAA-T-----------A----------GAAT---AT-------TGTATC---TTCAGTTTTTTTTT--GTAT-CA-------TCA--------------TCTATTCTTTACGT------TTCTCGA--ATGCG---------T---------------AATAA---ATGTAACATGCAACTGATT--GCA--AC-AATT----T-CTCATT-TTTTGTAGACATAAGTATCTCA
gi|10 : acagatacaagatacaaagtttATTGTG--ATAAA------AGGCA--TCCAGCCCACAACACA---T--A-ATACAAACATGTTA--A-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATCTGAAT------AAAGAT-GTCAACTATAAATC---AT--TGTAAG----AG--CATTGTTATAAGCA--GTATC--TTG-AATGTGGCTTATAC------ATAA-T-----------A----------GTAT---AT-------TGTATC---TTCAG--TTATTTT--GTAT-CA-------TCA--------------TCAATTCTTTACGT------TTCTCGA--ATGCG---------T---------------AATAA---ATGTAACATGCAACttt
gi|14 : caagacacaagatacaaagtttATTGTG--ATATA------AGGCC--TCCAACCCACAACACA---C--A-ATACAAACATGTTA--A-TTATGA--AAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----AG--CTTTGTTATAAGCA--GTATC--CTG-AATGTGGCATATAC------ATAA-C-----------A----------GAAT---AT-------TGTATC---TTCAGT-TTTTTTT--GTAT-CA-------TCA--------------T------------atat
gi|9 : cagatacaagatacaaagtttATTGTG--ATAAA------AGGCC--TCAAGCACACAACACA---T--A-ATACAAAAATGGTA--A-TTATGA--AAT-TGTATACGATGT-AAA-AATGCATTTGTAT------TAAGAT-ATCAACAATAAATA---GG--T----AGAAGAA--CATTGTTATAAGTA--ATATT--TTG-AATAGAGCATATAT------GTTA-T-----------A----------GAAT---AT-------TTTATA---TTCAT--TTTTTTTCAGCAT-CA-------TCAATTCCCTTTGT---T------------T------CTC---A--------------------------------AATGCGTTATGTAATACGCAACTTATT--GGA--AC-ACTT----T-TTC-AT-TTTc
gi|15 : atgatacaagatacaaagtttATCGTG--ATATACATGTAAGGCC--TCCAGCCCACAATTCA---T--A-ATACATACATGTCAATTATTATGA--AAT-TGTACACCATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----AG--CATTGTTATAAGCA--GTATC--TTG-AATGTGGCAT
gi|22 : atacaagatacaaagtttATTGTG--ATATA------AGGCC--TCCAGCCCACAACACA---T--A-ATACAAACATGTTA--A-TTATGA--AAT-TGTa
gi|7 : tacaagatacaagctacaaagtttATTGAG--ACCTA------AGGCCGGTCCAGCACACAACACA---T--A-ACA--------------------G--AGT-TGTACATAATGTGAAA-AATGTACTTGAAA------TA-AATCATTTGTAACAGAAC---AT--T----AT---AA--CATTGT-ACAAAAAGGACATCAACTGAGACATA-CATGTAATATGAAATAA-T-----------ATCTTCAGTCAAACT---ATCTCTTTTTTTGTCAAAATCA-----ACTTT--TCATATT-------TCA--------------T------------A------T-----A--A-------------CGT-------------AACAA---ATGTAACA-GCAACTGTTT--GTA--CCGATTT----T-----ATGTTTTGAAAATAAAAGT-T-TAAATACTTTTTGATATTGACATTTA-AGAAAGTA----------GAAGGTAT-TTTCTCACCAAGAT----AAAAGTAAGCT
gi|20 : gatacaatatcagttttcaaattttATTGTG--ATATA------AGGCC--TCCAGCCCACAA
gi|19 : caagagcagaagaatacaaagtttATTGTGCAATATA------AGGCC--TACGGCCCAAAACACA---T--A-agaagaaaaaaactgattcaaacaaaaaaatcaggtacaaatgtact
gi|17 : cataatgtttatatttaaatctgaacaattaaaaagtgattgaattaatgacattaatagggaaaatgcacgtcaagatacaagatacaaagtttTTGTG--ATATA------AGACC----------ACAACACG---T--A-ATACAAACATATTA--A-TCATGA--AAC-TGTACACGATGT-AAA-AATACAACTGAAT------TAAAAT-GTCAACAATAAATC-------------------------ATTATAAG-A--ATATC--TTG-AACATAGCATttcatgc
gi|24 : aacacacatgcagtaatgtacaggttatcTTGCG--ATA-A------AGGCC--TCCAGCCCTAAACAC-------A-ATACAAAa
gi|11 : caaatacaaaaaacaaaactttgGTG--ATATG------AGGCC--TCCAGCCAACAACATATCTT--ACATACAAGCATG-----T-TTATAATGAAT-TATACACAATGT--AT-AATGCTTTTGAAT------TAAGAG-GTTAACACTAAATT---GT--T----ACAAGAA--TATTATTATAAGTA--ATGTT--TTG-AATAT--CATG--C------ATTA-TG----------A----------GA-T---AT-------TATATC---TTCAG--TTATTAT--GTAT-CA-------TCATTAACTTCTTACGTT------------T------CTC---A--AGTGTG--------T---------------AACAA---ATGTAACAAGCAACTGATT--GCAGCACTTTTT----TATTC-AT-TTT
gi|18 : GTG--ATGCA------AGTCC--TCAAGTTTAAAACACA---T--A-ATACAAAAATGCTA--A-TAATGA--A-T-TGCACACGATGT-AAA-AATGAATTTGAAA------TAGGCT-ATCAACA
gi|16 : agtttaa--TCAAGCCATCAACATA---T--C-ATACAAACATGTAA--A-TTATGA--AAG-TGTACACGATGT-AAA-AATGCATCTGAAT------GAAGAT-GTCAACAATAAATCATTGT--T----AG---AG--CATTGTTATAAGCA--GTATC--TTG-AATGTGGCATATAC------ATAA-T-----------A----------tgatttaatacaaagtatgcggaatgtattcatattgatattagattgttg
gi|12 : gtttatctactaagcgaccgaA--AATGTGCACACGATGT-GAA-AATGAATTTGAATTTAAAATAAGGTAATCGACATGAAATC---AT--T---------------TTGTTATGAGTA--AGGCA--TCA-AATAAGGCATAAAC------ATGG-T------------------------CTGAAGT-------AATACA---TTTAG--TTATTTT--GCGT-CA-------AAA--------------TAAACCCC-----T------TAC---A--AATAAAATAAATCAC---------------AATTA---ACATAACAAGCGGCCCGTTGCGCA--GC-ATTT----T-TTTTTT-TTTTTAA-ATTTAAGTGT-GCGGAATTTGTTCA
gi|4 : GTAC------ATAAGT-----------A----------GA-T---AT-------TATATC---TTCAG--TTATTTT--GCAT-CACATCAATTCA--------------T------------TACGATATTC---A--AATGTA--------T---------------AATAA---AGGTAACAAGCAACCGATT--GGA--ACGATTT----T-TTTAAT-TTTTTAAGAGATATGTAT-TCGGAATGTGTTCATACT-AGAGTGATGAAA-GTAGTTTTTTGTGGAA--TGTGTACCTCACGCAGAT----AAAATAAAGCTGTACATATTAATAA-----AAAATGATACTCATCCTCAACTTCATTTAAT------GTACATAGTTTGCAAACTCGTAA-GTTCTTATCACTATTATGCTGCCTTACGGTTTTGCATTATGTGAATCAGATCTGAACATAGCCAGTGAATATCTAAAGATCTAACGGGCGAAATAGCTATATATCTGACCATGAATTAGTTTATATTATTTTTTAT--AAACACAGTTTGGACGATGCGTTAATTGATTCTTTCAAGCTCTACATCTGTTGGTCTTTTAAATGTCTAACTAATAACAACATAAACACATTTTTATTTTGGCATAATATTGGTTTAc
gi|6 : agTA--TCTTTGTGGGG--TATATATTCCACAAAAGT----Ac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATTTGTTAAGTGTCCCAGAATCGAACGCATTTTGGTAGTGTTGTTACCATCGTCATCGTCATCAAGGTAGGCATACACTTCCTAACTGCGTGCTGTCTTAAGGGCCTACGCAGTTGCTAGTGACTACTACTTGCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|21 ): AATATACAAATTTCATTGTGATAAGAGGTATCCAGCAGTTCACAACATGATGAATAGGAAACTGTGTGAGATGCCAATAATGCAT
Unaligned ( gi|23 ): ATACCAAATATATACAAGATACAGCGTTTATTGTGAAATATATGACCTCCAACCAAAAATACATA
Unaligned ( gi|25 ): ACAAAACACAAATTACAAAGTTTATTTTTATATAAGACTTCTAGGCCGCAACTGATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444 11111111111 111111111111 1111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 111 22222 222222 444444444 7777777777777777777 2222 11 44444444444 222222 1 22222 111 444444444 1 1
lowQualScore : 22 1 666666 22 666 2 2 444 2 2 4 777777 2 444 6666 33 22222222222222 4 33 2 2 88888888888 44 1 77 555555555555 44 6666 7777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111 555 4 55 8 0 6666 3 777 66 1 5 1 77 0 5 2222 111 00000 1 333333 1 8 000000000 2 7777777777777777777 1111 33 77777777777 888888 0 0 55555 777 000000000 0 0
lowQualScore : .. . ...... .. ... . . ... . . . ...... . ... .... .. .............. . .. . . ........... .. . .. ............ .. .... ....... ............................................................................... ... . .. . . .... . ... .. . . . .. . . .... ... ..... . ...... . . ......... . ................... .... .. ........... ...... . . ..... ... ......... . .
lowQualScore : 99 1 111111 88 666 1 2 111 2 4 7 222222 5 444 1111 44 22222222222222 2 44 5 7 00000000000 44 0 33 888888888888 22 5555 7777777 8888888888888888888888888888888888888888888888888888888888888888888888888888888 888 2 00 2 8 8888 6 888 99 3 7 0 99 1 7 1111 888 00000 0 000000 0 0 000000000 0 5555555555555555555 2222 88 55555555555 888888 2 0 00000 555 000000000 0 0
consensus : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATC---GT--T----A----A--A-CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-TA-----------GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTT---GAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
Reference ( family-4923 ) : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATC---GT--T----A----A--A-CATTGTTATAAGCA--GTATCTTGAATGTG-GCATATACATAA-TA-----------GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACANGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTT---GAAGACATAAGTATTCGGAAT--TTGTTCATATT-ACANTGACAAAA--AGTATTTTTGTGGAATATA-TACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTCNTCTACCTCATTTGAT------GTACATAGTTTGCAAANCCGTAA-GTTCTTATGATT---------CATTACGGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|1 : TAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A-ATACA-AACATGTTATTTA---TGAAAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCA---ACAATAAATC---GT--T----A----A--A-CATTGTTATAAATA--ATATTTTGGATATG-GCATATACATAA-TA-----------GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTT---GAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|10 : ATTGTG--ATAAA------AGGCA--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------AAAGAT-GTCA---ACTATAAATC---AT--TGTAAG----A--G-CATTGTTATAAGCA--GTATCTTGAATGTG-GCTTATACATAA-TA-----------GTA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------TCAATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACt
gi|11 : caagacacaagatacaaagtttGTG--ATATG------AGGCC--TCCAGCCAACAACATATCTTACATACA-AGCATGTTTATAA---TGAA-T-TATACACAATGT-ATA-A-TGCTTTTGAAT------TAAGAG-GTTA---ACACTAAATT---GT--T----ACAAGA--A-TATTATTATAAGTA--ATGTTTTGAATAT-----CATGCATTA-TG-----------AGA-TATTATATCTTCAG--TTA------------TTAT--GT----ATCA-------TCATTAACTTCTTACGTT--------------T------CTC----A-------------AGTGTGT---------------AACAA---ATGTAACAAGCAACTGATT--GCAGC-ACTTTTTTATTCAT-TTTatat
gi|12 : AAATGTGCACACGATGT-GAA-AATGAATTTGAATTTAAAATAAGGTAATCG---ACATGAAATC---AT--T----------------TTGTTATGAGTAAGGCATC--AAATAAG-GCATAAACATGG-TCT----------GAAGTA--ATACATTTAG--TTA------------TTTT--GC----GTCA-------AAA--------------TAAACCCC-------T------TAC----AAATAAAATAAATCA-----C---------------AATTA---ACATAACAAGCGGCCCGTTGCGCAGC-ATTTTTTTT---TT-TTTT---TAA-ATTTAAGTGTGCGGAAT--TTGTTCA
gi|14 : ATTGTG--ATATA------AGGCC--TCCAACCCACAACACAC---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATC---AT--TGTAAG----A--G-CTTTGTTATAAGCA--GTATCCTGAATGTG-GCATATACATAA-CA-----------GAA-TATTGTATCTTCAGT-TTT------------TTTT--GT----ATCA-------TCA--------------T--------------c
gi|15 : cagatacaagatacaaagtttATCGTG--ATATACATGTAAGGCC--TCCAGCCCACAATTCAT---A-ATACA-TACATGTCAATTATTATGAAAT-TGTACACCATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATC---AT--TGTAAG----A--G-CATTGTTATAAGCA--GTATCTTGAATGTG-GCATAc
gi|16 : atacaagatacaaagttt--TCAAGCCATCAACATAT---C-ATACA-AACATGTAAATTA---TGAAAG-TGTACACGATGT-AAA-AATGCATCTGAAT------GAAGAT-GTCA---ACAATAAATCATTGT--T----AG---A--G-CATTGTTATAAGCA--GTATCTTGAATGTG-GCATATACATAA-TA-----------
gi|17 : gtttatctactaagcgaccgaTTGTG--ATATA------AGACC----------ACAACACGT---A-ATACA-AACATATTAATCA---TGAAAC-TGTACACGATGT-AAA-AATACAACTGAAT------TAAAAT-GTCA---ACAATAAATC--------------------------ATTATAAG-A--ATATCTTGAACATA-GCATA
gi|18 : aacacacatgcagtaatgtacaggttatcGTG--ATGCA------AGTCC--TCAAGTTTAAAACACAT---A-ATACA-AAAATGCTAATAA---TG-AAT-TGCACACGATGT-AAA-AATGAATTTGAAA------TAGGCT-ATCA---AC-AT-GAT-----T--T----A----A----------TACAA--A--GTATGCGGAATGTATTCATATTGATAT-TA-----------GAT-TGTT
gi|19 : agtttaaATTGTGCAATATA------AGGCC--TACGGCCCAAAACACAT---A-g
gi|2 : cataatgtttatatttaaatctgaacaattaaaaagtgattgaattaatgacattaatagggaaaatgcacgtcaagatacaagatacaaagtttTAATTGTG--ATATA------AGGCC--TCAAGCCCACAACACAT---A-ATACA-AACATGTTATTTA---TGAAAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCA---ACAATAAATC---GT--T----A----A--A-CATTGTTATAAATA--ATATTTTGGATATG-GCATGTACATAA-TA-----------GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTT---GAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CATCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATATGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTGGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCCAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCTttcatgc
gi|20 : ATTGTG--ATATA------AGGCC--TCCAGCCCACAA
gi|21 : caagagcagaagaatacaaagtttATTGTG--ATAAG------AGGTA--TCCAGC--------------A-GTTCACAACATGATGAATA---GGAAAC-TGTGTGAGATGC-CAATAATGCATagaagaaaaaaactgattcaaacaaaaaaatcaggtacaaatgtact
gi|22 : aatatacaaatttcATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGT
gi|24 : tacaagatacaagctacaaagtttTTGCG--ATA-A------AGGCC--TCCAGCCCTAAACAC-----A-ATACA-AA
gi|3 : caaatacaaaaaacaaaactttgTAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A-ATACA-AACATGTTATTTA---TGAAAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCA---ACAATAAATC---GT--T----A----A--A-CATTGTTATAAATA--ATATTTTGGATATG-GCATATACATAA-TA-----------GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTT---GAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|4 : TACATAAGTA-----------GA--TATTATATCTTCAG--TTA------------TTTT--GC----ATCACATCAATTCA--------------T--------------TACGATATTC----A-------------AATGTAT---------------AATAA---AGGTAACAAGCAACCGATT--GGAACGATTTTTTTA---AT-TTTT---TAAGAGATATGTATTCGGAAT--GTGTTCATACT-AGAGTGATGAAAGTAGT-TTTTTGTGGAATGTG-TACCTCACGCAGAT----AAAATAAAGCTGTACATATTAATAA-----AAAATGATACTCATCCTCAACTTCATTTAAT------GTACATAGTTTGCAAACTCGTAA-GTTCTTATCACTATTATGCTGCCTTACGGTTTTGCATTATGTGAATCAGATCTGAACATAGCCAGTGAATATCTAAAGATCTAACGGGCGAAATAGCTATATATCTGACCATGAATTAGTTTATATTATTTTTTATAAACACAGTTTGGACGATGCGTTAATTGATTCTTTCAAGCTCTACATCTGTTGGTCTTTTAAATGTCTAACTAATAACAACATAAACACATTTTTATTTTGGCATAATATTGGTTTA
gi|5 : aggATTGTG--ATA--------AGGCC--TCCAGCCCACAACACATGT-A-ATACA-AATATGTTAATTA---TGAAAT-TGTACACAATGT-AAA-AATGCATTTGAAA------TCAGAT-GTCA---GCAATAATTC---GCAAT----A----AGAA-CATTGTTTTAAGTA--ATACTTTGAAGATG-GCATATACAT----------------GAA-TATTTAATCTTCAG--TTT------------CTTT--GC----ATCA-------TCA--------------TCAATTCCTTACATTT------CTC----A-------------AATGTGT---------------AATAA---ATGTACCTGGCAACTAACT--GCAAC-AATTTTTCA---TT-TCTT---GAAG----AAGTATTTGAAAT--TTATTCATATT-ACATTGACAGAA--A-TATGTTTGTGGAATATA-TACCCCACGAAGATATTAAACAGTAAGCTGTACA-----AAATAATAAAAAGTGACGCTCGTCCTCTACCTCATTTGATGTACCGGTACATAGTTTGCAAACCCATAATGTTc
gi|6 : aagatacaaaatacaaagtttATTGTG--AAATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTAAAT------TAAGAT-GTCA---ACAATAAATT---AT--TGTA-A----A--ATCATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-TATTGTATATAAAGAA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------T--------------CAA----TTC----ATT-----------A-----CGTTTCTCGAATGCGTAATAC---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCA---TT-TTTTTTTAAAAACATAAGTATTCGGAAT--TTGTTCATAAT-AGAATGACAAAA---GTACTTTTGTGGAATATA-TACCCCACAAAGAT----AAGAGTAGGCTG
gi|7 : acaagctacaaagtttATTGAG--ACCTA------AGGCCGGTCCAGCACACAACACAT---A-ACA---------------------GAGT-TGTACATAATGTGAAA-AATGTACTTGAAA------TAA----ATCATTTGTAACAGAAC---AT--T----AT---A--A-CATTG-TACAAAAA--GGACATCAACTGAG-ACATACATGTAA-TAT----------GAA--ATAATATCTTCAG--TCAAACTATCTCTTTTTTT--GTCAAAATCAACTTT--TCA--------------TA-------------T------TTCATATA-------------A-----CGT-------------AACAA---ATGTAACA-GCAACTGTTT--GTACCGATTTT-------ATGTTTT---GAAAATAAAAGT-TT--AAATACTTTTTGATATTGACATTTA-AGAA--AGTA--------GAAGGTATTTTCTCACCAAGAT----AAAAGTAAGCT
gi|8 : gatacaatatcagttttcaaattttATTATG--ATATA------AGGCC--TCCAACCTACAACACAT---A-ATACA-AACATGTAAATTA---TGAAAT-TGTACACGATGT-AAAGAATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATC---AT--TGTAAG----A--G-CATTGTTCTAAGCA--GTATCCTGGATGTG-GCGTATACATAA-TA-----------GAA-TATTGTATCTTCAGTTTTT------------TTTT--GT----ATCA-------TCA--------------TCTATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCA---TT-TTTT---GTAGACATAAGTAT
gi|9 : acagatacaagatacaaagtttATTGTG--ATAAA------AGGCC--TCAAGCACACAACACAT---A-ATACA-AAAATGGTAATTA---TGAAAT-TGTATACGATGT-AAA-AATGCATTTGTAT------TAAGAT-ATCA---ACAATAAATA---GG--T----AGAAGA--A-CATTGTTATAAGTA--ATATTTTGAATAGA-GCATATATGTTA-TA-----------GAA-TATTTTATATTCAT--TTT------------TTTTCAGC----ATCA-------TCAATTCCCTTTGT---T--------------T------CTC----A-----------------------------------AATGCGTTATGTAATACGCAACTTATT--GGAAC-ACTTTTTC----AT-TTTctcattt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTTAAGTGTCCCAGAATCGAACGCATTTTGGTAGTGTTGTTACCATCGTCATCGTCATCAAGGTAGGCATACACTTCCTAACTGCGTGCTGTCTTAAGGGCCTACGCAGTTGCTAGTGACTACTACTTGCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|23 ): ATACCAAATATATACAAGATACAGCGTTTATTGTGAAATATATGACCTCCAACCAAAAATACATA
Unaligned ( gi|25 ): ACAAAACACAAATTACAAAGTTTATTTTTATATAAGACTTCTAGGCCGCAACTGATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111 33333333333333333333333 1111111111111 111111111111 1111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 1111 111 22222 222222 444444444 7777777777777777777 2222 11 44444444444 222222 1 22222 111 444444444 1 1
lowQualScore : 22 1 666666 22 666 555555555555555 2 2 444 2 4 777777 2 99999999999999999999999 1 33 2 2 3333333333333 44 1 77 555555555555 44 6666 7777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111 555 4 55 8 0 3333 3 66 1 5 0 0 77 0 5 2222 111 00000 333333 8 000000000 7777777777777777777 1111 33 77777777777 888888 0 0 55555 777 000000000 0 0
lowQualScore : .. . ...... .. ... ............... . . ... . . ...... . ....................... . .. . . ............. .. . .. ............ .. .... ....... ............................................................................... ... . .. . . .... . .. . . . . .. . . .... ... ..... ...... . ......... ................... .... .. ........... ...... . . ..... ... ......... . .
lowQualScore : 99 1 111111 88 666 333333333333333 2 2 111 2 7 222222 5 88888888888888888888888 9 44 5 7 2222222222222 44 0 33 888888888888 22 5555 7777777 8888888888888888888888888888888888888888888888888888888888888888888888888888888 888 8 00 2 8 2222 6 99 3 7 6 1 99 1 7 1111 888 00000 000000 0 000000000 5555555555555555555 2222 88 55555555555 888888 2 0 00000 555 000000000 0 0
consensus : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
Reference ( family-4923 ) : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|1 : TAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A---------------ATAC-A-AACATGTTATTTA---TGAAAT-TGTACACGATGTAAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAATA--ATATTTTGGATATG-GCATATACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|10 : ATTGTG--ATAAA------AGGCA--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------AAAGAT-GTCAACTATAAATC---AT--TGTAAG----A--G--CATTGTTATAAGCA--GTATCTTGAATGTG-GCTTATACATAA-T-----------A-GTA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------TCAATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACt
gi|11 : caagacacaagatacaaagtttGTG--ATATG------AGGCC--TCCAGCCAACAACATATCTTAC--------------ATAC-A-AGCATGTTTATAA---TGAA-T-TATACACAATGTATA-A-TGCTTTTGAAT------TAAGAG-GTTAACACTAAATT---GT--T----ACAAGA--A--TATTATTATAAGTA--ATGTTTTGAATAT-----CATGCATTA-T-----------G-AGA-TATTATATCTTCAG--TTA------------TTAT--GT----ATCA-------TCATTAACTTCTTACGTT--------------T------CTC----A-------------AGTGTGT---------------AACAA---ATGTAACAAGCAACTGATT--GCAGC-ACTTTTTTATTCAT-TTTatat
gi|12 : AAATGTGCACACGATGTGAA-AATGAATTTGAATTTAAAATAAGGTAATCGACATGAAATC---AT--T-----------------TTGTTATGAGTAAGGCATC--AAATAAG-GCATAAACATGG-T-----------CTGAAGTA--ATACATTTAG--TTA------------TTTT--GC----GTCA-------AAA--------------TAAACCCC-------T------TAC----AAATAAAATAAATCA-----C---------------AATTA---ACATAACAAGCGGCCCGTTGCGCAGC-ATTTTTTTT---TT-TTTTTAA-ATTTAAGTGTGCGGAAT--TTGTTCA
gi|14 : ATTGTG--ATATA------AGGCC--TCCAACCCACAACACAC---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----A--G--CTTTGTTATAAGCA--GTATCCTGAATGTG-GCATATACATAA-C-----------A-GAA-TATTGTATCTTCAGT-TTT------------TTTT--GT----ATCA-------TCA--------------T--------------c
gi|15 : cagatacaagatacaaagtttATCGTG--ATATACATGTAAGGCC--TCCAGCCCACAATTCAT---A---------------ATAC-A-TACATGTCAATTATTATGAAAT-TGTACACCATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----A--G--CATTGTTATAAGCA--GTATCTTGAATGTG-GCATAc
gi|16 : atacaagatacaaagttt--TCAAGCCATCAACATAT---C---------------ATAC-A-AACATGTAAATTA---TGAAAG-TGTACACGATGTAAA-AATGCATCTGAAT------GAAGAT-GTCAACAATAAATCATTGT--T----AG---A--G--CATTGTTATAAGCA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-
gi|17 : gtttatctactaagcgaccgaTTGTG--ATATA------AGACC----------ACAACACGT---A---------------ATAC-A-AACATATTAATCA---TGAAAC-TGTACACGATGTAAA-AATACAACTGAAT------TAAAAT-GTCAACAATAAATC---------------------------ATTATAAG-A--ATATCTTGAACATA-GCATA
gi|18 : aacacacatgcagtaatgtacaggttatcGTG--ATGCA------AGTCC--TCAAGTTTAAAACACAT---A---------------ATAC-A-AAAATGCTAATAA---TG-AAT-TGCACACGATGTAAA-AATGAATTTGAAA------TAGGCT-ATCAAC-AT-GAT-----T--T----A----A-----------TACAA--A--GTATGCGGAATGTATTCATATTGATAT-T-----------A-GAT-TGTT
gi|19 : agtttaaATTGTGCAATATA------AGGCC--TACGGCCCAAAACACAT---A---------------g
gi|2 : cataatgtttatatttaaatctgaacaattaaaaagtgattgaattaatgacattaatagggaaaatgcacgtcaagatacaagatacaaagtttTAATTGTG--ATATA------AGGCC--TCAAGCCCACAACACAT---A---------------ATAC-A-AACATGTTATTTA---TGAAAT-TGTACACGATGTAAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAATA--ATATTTTGGATATG-GCATGTACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CATCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATATGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTGGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCCAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCTttcatgc
gi|20 : ATTGTG--ATATA------AGGCC--TCCAGCCCACAA
gi|21 : caagagcagaagaatacaaagtttATTGTG--ATAAG------AGGTA--TCCAGC--------------A---------------GTTC-ACAACATGATGAATA---GGAAAC-TGTGTGAGATGCCAATAATGCATagaagaaaaaaactgattcaaacaaaaaaatcaggtacaaatgtact
gi|22 : aatatacaaatttcATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGT
gi|24 : tacaagatacaagctacaaagtttTTGCG--ATA-A------AGGCC--TCCAGCCCTAAACAC-----A---------------ATAC-A-AA
gi|3 : caaatacaaaaaacaaaactttgTAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A---------------ATAC-A-AACATGTTATTTA---TGAAAT-TGTACACGATGTAAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAATA--ATATTTTGGATATG-GCATATACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|4 : TACATAAGT-----------A-GA--TATTATATCTTCAG--TTA------------TTTT--GC----ATCACATCAATTCA--------------T--------------TACGATATTC----A-------------AATGTAT---------------AATAA---AGGTAACAAGCAACCGATT--GGAACGATTTTTTTA---AT-TTTTTAAGAGATATGTATTCGGAAT--GTGTTCATACT-AGAGTGATGAAAGTAGT-TTTTTGTGGAATGTG-TACCTCACGCAGAT----AAAATAAAGCTGTACATATTAATAA-----AAAATGATACTCATCCTCAACTTCATTTAAT------GTACATAGTTTGCAAACTCGTAA-GTTCTTATCACTATTATGCTGCCTTACGGTTTTGCATTATGTGAATCAGATCTGAACATAGCCAGTGAATATCTAAAGATCTAACGGGCGAAATAGCTATATATCTGACCATGAATTAGTTTATATTATTTTTTATAAACACAGTTTGGACGATGCGTTAATTGATTCTTTCAAGCTCTACATCTGTTGGTCTTTTAAATGTCTAACTAATAACAACATAAACACATTTTTATTTTGGCATAATATTGGTTTA
gi|5 : aggATTGTG--ATA--------AGGCC--TCCAGCCCACAACACATGT-A---------------ATAC-A-AATATGTTAATTA---TGAAAT-TGTACACAATGTAAA-AATGCATTTGAAA------TCAGAT-GTCAGCAATAATTC---GCAAT----A----AGAA--CATTGTTTTAAGTA--ATACTTTGAAGATG-GCATATACAT-----------------GAA-TATTTAATCTTCAG--TTT------------CTTT--GC----ATCA-------TCA--------------TCAATTCCTTACATTT------CTC----A-------------AATGTGT---------------AATAA---ATGTACCTGGCAACTAACT--GCAAC-AATTTTTCA---TT-TCTTGAAG----AAGTATTTGAAAT--TTATTCATATT-ACATTGACAGAA--A-TATGTTTGTGGAATATA-TACCCCACGAAGATATTAAACAGTAAGCTGTACA-----AAATAATAAAAAGTGACGCTCGTCCTCTACCTCATTTGATGTACCGGTACATAGTTTGCAAACCCATAATGTTc
gi|6 : aagatacaaaatacaaagtttATTGTG--AAATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTAAAT------TAAGAT-GTCAACAATAAATT---ATTGT----A----A--AATCATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-TATTGTATATAAA-GAA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------T--------------CAA----TTC----ATT-----------A-----CGTTTCTCGAATGCGTAATAC---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCATTTTT-TTTTAAAAACATAAGTATTCGGAAT--TTGTTCATAAT-AGAATGAC-AAA--AGTACTTTTGTGGAATATA-TACCCCACAAAGAT----AAGAGTAGGCTG
gi|7 : acaagctacaaagtttATTGAG--ACCTA------AGGCCGGTCCAGCACACAACACAT---AACAGAGTTGTACATAATGTGA-AAAATGT--ACT----TGAAAT---------------A-AAT-CATTTG---------TAACA--G--AACA-----------T--T----AT---A--A--CATTG-TACAAAAA--GGACATCAACTGAG-ACATACATGTAA-T-----------ATGAA--ATAATATCTTCAG--TCAAACTATCTCTTTTTTT--GTCAAAATCAACTTT--TCA--------------TA-------------T------TTCATATA-------------A-----CGT-------------AACAA---ATGTAACA-GCAACTGTTT--GTACCGATTTT-------ATGTTTTGAAAATAAAAGT-TT--AAATACTTTTTGATATTGACATTTA-AGAA--AGTA--------GAAGGTATTTTCTCACCAAGAT----AAAAGTAAGCT
gi|8 : gatacaatatcagttttcaaattttATTATG--ATATA------AGGCC--TCCAACCTACAACACAT---A---------------ATAC-A-AACATGTAAATTA---TGAAAT-TGTACACGATGTAAAGAATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----A--G--CATTGTTCTAAGCA--GTATCCTGGATGTG-GCGTATACATAA-T-----------A-GAA-TATTGTATCTTCAGTTTTT------------TTTT--GT----ATCA-------TCA--------------TCTATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCA---TT-TTTTGTAGACATAAGTAT
gi|9 : acagatacaagatacaaagtttATTGTG--ATAAA------AGGCC--TCAAGCACACAACACAT---A---------------ATAC-A-AAAATGGTAATTA---TGAAAT-TGTATACGATGTAAA-AATGCATTTGTAT------TAAGAT-ATCAACAATAAATA---GG--T----AGAAGA--A--CATTGTTATAAGTA--ATATTTTGAATAGA-GCATATATGTTA-T-----------A-GAA-TATTTTATATTCAT--TTT------------TTTTCAGC----ATCA-------TCAATTCCCTTTGT---T--------------T------CTC----A-----------------------------------AATGCGTTATGTAATACGCAACTTATT--GGAAC-ACTTTTTC----AT-TTTctcattt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTTAAGTGTCCCAGAATCGAACGCATTTTGGTAGTGTTGTTACCATCGTCATCGTCATCAAGGTAGGCATACACTTCCTAACTGCGTGCTGTCTTAAGGGCCTACGCAGTTGCTAGTGACTACTACTTGCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|23 ): ATACCAAATATATACAAGATACAGCGTTTATTGTGAAATATATGACCTCCAACCAAAAATACATA
Unaligned ( gi|25 ): ACAAAACACAAATTACAAAGTTTATTTTTATATAAGACTTCTAGGCCGCAACTGATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111 33333333333333333333333 1111111111111 111111111111 1111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 1111 111 22222 222222 444444444 7777777777777777777 2222 11 44444444444 222222 1 22222 111 444444444 1 1
lowQualScore : 22 1 666666 22 666 555555555555555 2 2 444 2 4 777777 2 99999999999999999999999 1 33 2 2 3333333333333 44 1 77 555555555555 44 6666 7777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111 555 4 55 8 0 3333 3 66 1 5 0 0 77 0 5 2222 111 00000 333333 8 000000000 7777777777777777777 1111 33 77777777777 888888 0 0 55555 777 000000000 0 0
lowQualScore : .. . ...... .. ... ............... . . ... . . ...... . ....................... . .. . . ............. .. . .. ............ .. .... ....... ............................................................................... ... . .. . . .... . .. . . . . .. . . .... ... ..... ...... . ......... ................... .... .. ........... ...... . . ..... ... ......... . .
lowQualScore : 99 1 111111 88 666 333333333333333 2 2 111 2 7 222222 5 88888888888888888888888 9 44 5 7 2222222222222 44 0 33 888888888888 22 5555 7777777 8888888888888888888888888888888888888888888888888888888888888888888888888888888 888 8 00 2 8 2222 6 99 3 7 6 1 99 1 7 1111 888 00000 000000 0 000000000 5555555555555555555 2222 88 55555555555 888888 2 0 00000 555 000000000 0 0
consensus : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
Reference ( family-4923 ) : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|1 : TAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A---------------ATAC-A-AACATGTTATTTA---TGAAAT-TGTACACGATGTAAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAATA--ATATTTTGGATATG-GCATATACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|10 : ATTGTG--ATAAA------AGGCA--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------AAAGAT-GTCAACTATAAATC---AT--TGTAAG----A--G--CATTGTTATAAGCA--GTATCTTGAATGTG-GCTTATACATAA-T-----------A-GTA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------TCAATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACt
gi|11 : caagacacaagatacaaagtttGTG--ATATG------AGGCC--TCCAGCCAACAACATATCTTAC--------------ATAC-A-AGCATGTTTATAA---TGAA-T-TATACACAATGTATA-A-TGCTTTTGAAT------TAAGAG-GTTAACACTAAATT---GT--T----ACAAGA--A--TATTATTATAAGTA--ATGTTTTGAATAT-----CATGCATTA-T-----------G-AGA-TATTATATCTTCAG--TTA------------TTAT--GT----ATCA-------TCATTAACTTCTTACGTT--------------T------CTC----A-------------AGTGTGT---------------AACAA---ATGTAACAAGCAACTGATT--GCAGC-ACTTTTTTATTCAT-TTTatat
gi|12 : AAATGTGCACACGATGTGAA-AATGAATTTGAATTTAAAATAAGGTAATCGACATGAAATC---AT--T-----------------TTGTTATGAGTAAGGCATC--AAATAAG-GCATAAACATGG-T-----------CTGAAGTA--ATACATTTAG--TTA------------TTTT--GC----GTCA-------AAA--------------TAAACCCC-------T------TAC----AAATAAAATAAATCA-----C---------------AATTA---ACATAACAAGCGGCCCGTTGCGCAGC-ATTTTTTTT---TT-TTTTTAA-ATTTAAGTGTGCGGAAT--TTGTTCA
gi|14 : ATTGTG--ATATA------AGGCC--TCCAACCCACAACACAC---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----A--G--CTTTGTTATAAGCA--GTATCCTGAATGTG-GCATATACATAA-C-----------A-GAA-TATTGTATCTTCAGT-TTT------------TTTT--GT----ATCA-------TCA--------------T--------------c
gi|15 : cagatacaagatacaaagtttATCGTG--ATATACATGTAAGGCC--TCCAGCCCACAATTCAT---A---------------ATAC-A-TACATGTCAATTATTATGAAAT-TGTACACCATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----A--G--CATTGTTATAAGCA--GTATCTTGAATGTG-GCATAc
gi|16 : atacaagatacaaagttt--TCAAGCCATCAACATAT---C---------------ATAC-A-AACATGTAAATTA---TGAAAG-TGTACACGATGTAAA-AATGCATCTGAAT------GAAGAT-GTCAACAATAAATCATTGT--T----AG---A--G--CATTGTTATAAGCA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-
gi|17 : gtttatctactaagcgaccgaTTGTG--ATATA------AGACC----------ACAACACGT---A---------------ATAC-A-AACATATTAATCA---TGAAAC-TGTACACGATGTAAA-AATACAACTGAAT------TAAAAT-GTCAACAATAAATC---------------------------ATTATAAG-A--ATATCTTGAACATA-GCATA
gi|18 : aacacacatgcagtaatgtacaggttatcGTG--ATGCA------AGTCC--TCAAGTTTAAAACACAT---A---------------ATAC-A-AAAATGCTAATAA---TG-AAT-TGCACACGATGTAAA-AATGAATTTGAAA------TAGGCT-ATCAAC-AT-GAT-----T--T----A----A-----------TACAA--A--GTATGCGGAATGTATTCATATTGATAT-T-----------A-GAT-TGTT
gi|19 : agtttaaATTGTGCAATATA------AGGCC--TACGGCCCAAAACACAT---A---------------g
gi|2 : cataatgtttatatttaaatctgaacaattaaaaagtgattgaattaatgacattaatagggaaaatgcacgtcaagatacaagatacaaagtttTAATTGTG--ATATA------AGGCC--TCAAGCCCACAACACAT---A---------------ATAC-A-AACATGTTATTTA---TGAAAT-TGTACACGATGTAAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAATA--ATATTTTGGATATG-GCATGTACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CATCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATATGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTGGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCCAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCTttcatgc
gi|20 : ATTGTG--ATATA------AGGCC--TCCAGCCCACAA
gi|21 : caagagcagaagaatacaaagtttATTGTG--ATAAG------AGGTA--TCCAGC--------------A---------------GTTC-ACAACATGATGAATA---GGAAAC-TGTGTGAGATGCCAATAATGCATagaagaaaaaaactgattcaaacaaaaaaatcaggtacaaatgtact
gi|22 : aatatacaaatttcATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGT
gi|24 : tacaagatacaagctacaaagtttTTGCG--ATA-A------AGGCC--TCCAGCCCTAAACAC-----A---------------ATAC-A-AA
gi|3 : caaatacaaaaaacaaaactttgTAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A---------------ATAC-A-AACATGTTATTTA---TGAAAT-TGTACACGATGTAAA-AATGCATTTGAAT------TACGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAATA--ATATTTTGGATATG-GCATATACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|4 : TACATAAGT-----------A-GA--TATTATATCTTCAG--TTA------------TTTT--GC----ATCACATCAATTCA--------------T--------------TACGATATTC----A-------------AATGTAT---------------AATAA---AGGTAACAAGCAACCGATT--GGAACGATTTTTTTA---AT-TTTTTAAGAGATATGTATTCGGAAT--GTGTTCATACT-AGAGTGATGAAAGTAGT-TTTTTGTGGAATGTG-TACCTCACGCAGAT----AAAATAAAGCTGTACATATTAATAA-----AAAATGATACTCATCCTCAACTTCATTTAAT------GTACATAGTTTGCAAACTCGTAA-GTTCTTATCACTATTATGCTGCCTTACGGTTTTGCATTATGTGAATCAGATCTGAACATAGCCAGTGAATATCTAAAGATCTAACGGGCGAAATAGCTATATATCTGACCATGAATTAGTTTATATTATTTTTTATAAACACAGTTTGGACGATGCGTTAATTGATTCTTTCAAGCTCTACATCTGTTGGTCTTTTAAATGTCTAACTAATAACAACATAAACACATTTTTATTTTGGCATAATATTGGTTTA
gi|5 : aggATTGTG--ATA--------AGGCC--TCCAGCCCACAACACATGT-A---------------ATAC-A-AATATGTTAATTA---TGAAAT-TGTACACAATGTAAA-AATGCATTTGAAA------TCAGAT-GTCAGCAATAATTC---GCAAT----A----AGAA--CATTGTTTTAAGTA--ATACTTTGAAGATG-GCATATACAT-----------------GAA-TATTTAATCTTCAG--TTT------------CTTT--GC----ATCA-------TCA--------------TCAATTCCTTACATTT------CTC----A-------------AATGTGT---------------AATAA---ATGTACCTGGCAACTAACT--GCAAC-AATTTTTCA---TT-TCTTGAAG----AAGTATTTGAAAT--TTATTCATATT-ACATTGACAGAA--A-TATGTTTGTGGAATATA-TACCCCACGAAGATATTAAACAGTAAGCTGTACA-----AAATAATAAAAAGTGACGCTCGTCCTCTACCTCATTTGATGTACCGGTACATAGTTTGCAAACCCATAATGTTc
gi|6 : aagatacaaaatacaaagtttATTGTG--AAATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTAAAT------TAAGAT-GTCAACAATAAATT---ATTGT----A----A--AATCATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-TATTGTATATAAA-GAA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------T--------------CAA----TTC----ATT-----------A-----CGTTTCTCGAATGCGTAATAC---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCATTTTT-TTTTAAAAACATAAGTATTCGGAAT--TTGTTCATAAT-AGAATGAC-AAA--AGTACTTTTGTGGAATATA-TACCCCACAAAGAT----AAGAGTAGGCTG
gi|7 : acaagctacaaagtttATTGAG--ACCTA------AGGCCGGTCCAGCACACAACACAT---AACAGAGTTGTACATAATGTGA-AAAATGT--ACT----TGAAAT---------------A-AAT-CATTTG---------TAACA--G--AACA-----------T--T----AT---A--A--CATTG-TACAAAAA--GGACATCAACTGAG-ACATACATGTAA-T-----------ATGAA--ATAATATCTTCAG--TCAAACTATCTCTTTTTTT--GTCAAAATCAACTTT--TCA--------------TA-------------T------TTCATATA-------------A-----CGT-------------AACAA---ATGTAACA-GCAACTGTTT--GTACCGATTTT-------ATGTTTTGAAAATAAAAGT-TT--AAATACTTTTTGATATTGACATTTA-AGAA--AGTA--------GAAGGTATTTTCTCACCAAGAT----AAAAGTAAGCT
gi|8 : gatacaatatcagttttcaaattttATTATG--ATATA------AGGCC--TCCAACCTACAACACAT---A---------------ATAC-A-AACATGTAAATTA---TGAAAT-TGTACACGATGTAAAGAATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---AT--TGTAAG----A--G--CATTGTTCTAAGCA--GTATCCTGGATGTG-GCGTATACATAA-T-----------A-GAA-TATTGTATCTTCAGTTTTT------------TTTT--GT----ATCA-------TCA--------------TCTATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCA---TT-TTTTGTAGACATAAGTAT
gi|9 : acagatacaagatacaaagtttATTGTG--ATAAA------AGGCC--TCAAGCACACAACACAT---A---------------ATAC-A-AAAATGGTAATTA---TGAAAT-TGTATACGATGTAAA-AATGCATTTGTAT------TAAGAT-ATCAACAATAAATA---GG--T----AGAAGA--A--CATTGTTATAAGTA--ATATTTTGAATAGA-GCATATATGTTA-T-----------A-GAA-TATTTTATATTCAT--TTT------------TTTTCAGC----ATCA-------TCAATTCCCTTTGT---T--------------T------CTC----A-----------------------------------AATGCGTTATGTAATACGCAACTTATT--GGAAC-ACTTTTTC----AT-TTTctcattt
blockSeqs : CA A CATGTA GG CTT ACAGAGTTGTACATA G C TTA G T TTAAAA A ATTGTAAGAG C AG T G ATTGTATATAAA AG G TT AACTATCTCTTT CA CAAA CATCAAT TAAACCCCTTACAAATAAAATAAATCAC GTT T GC T TTCA G AC G G GT T ATTA TAT AATAA GTACCG T ATTATGCTG TTGCATTATGTGAATCAGA GAAC AA ACGGGCGAAAT ATATCT T TTTAA TCT TAATAACAA G A
blockSeqs : . T . . GT C . . . . G . . GTTACAAGAA T . . . CT A A T . . . ACTTT TCAATTCTTTACGTTTCTCGAATGCGT . A . T TTTT . . G . . . . T . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . ATTGTAAGAG T . . . AT A A . . . . . TTAACTTCTTACGTTTCTCAAGTGTGT . A . G T . . T . . . . T . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . ATTGTAAGAG C . . . A A G . . . . . TCAATTCCTTACATTTCTCAAATGTGT . T . G A . . T . . . . . . . .
blockSeqs : . T . . . . . . . . . . . ATTGTTAGAG C . . . G T T . . . . . TCAATTCATTACGTTTCTCGAATGCGT . T . . A . . T . . . .
blockSeqs : . C . . . . . . . . . . . GCAATAAGAA C . . . A C T . . . . . TCTATTCTTTACGTTTCTCGAATGCGT . A . . A . . T . . . .
blockSeqs : . T . . . . . . . . . . . ATTGTAAAAT T . . . A C A . . . . . TTACGATATTCAAATGTAT . G . . T . .
blockSeqs : . T . . . . . . . . . . . ATTGTAAGAG T . . . A A T . . . . . ATTCCCTTTGTTTCTCA . T . . A .
blockSeqs : . T . . . . . . . . . . . GGTAGAAGAA T . . . A A G . . . . . TATTTCATATAACGT . T . . T .
blockSeqs : . A . . . . . . . . . . . GTTAAA T . . . A A A . . . . . TTTTCAAC . C . . A .
blockSeqs : . T . . . . . . . . . . . GTTAAA A . . . A A G . . . . . TTTTCAAC . .
blockSeqs : . T . . . . . . . . . . . TTATAA C . . . A A T . . . . .
blockSeqs : . T . . . . . . . . . . . TTAA T . . . A .
blockSeqs : . T . . . . . . . . . . . ATT . . . . .
blockSeqs : . T . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : ATTGTAAGAG*************
originalCons : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATC---GT--T----A----A--A--CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
finalCons : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A---------------ATAC-A-AACATGTTAATTA---TGAAAT-TGTACACGATGTAAA-AATGCATCTGAAT------TAAGAT-GTCAACAATAAATCATTGTAAGAG-------------CATTGTTATAAGTA--GTATCTTGAATGTG-GCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTTAAGTGTCCCAGAATCGAACGCATTTTGGTAGTGTTGTTACCATCGTCATCGTCATCAAGGTAGGCATACACTTCCTAACTGCGTGCTGTCTTAAGGGCCTACGCAGTTGCTAGTGACTACTACTTGCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|23 ): ATACCAAATATATACAAGATACAGCGTTTATTGTGAAATATATGACCTCCAACCAAAAATACATA
Unaligned ( gi|25 ): ACAAAACACAAATTACAAAGTTTATTTTTATATAAGACTTCTAGGCCGCAACTGATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111 111111111111 1111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 1111 111 22222 222222 444444444 7777777777777777777 2222 11 44444444444 222222 1 22222 111 444444444 1 1
lowQualScore : 22 1 666666 22 666 2 2 444 2 2 4 777777 2 444 66 1 3 33 2 4444444444444 33 1 77 555555555555 44 6666 7777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111 555 4 55 8 0 3333 3 66 1 5 0 0 77 0 5 2222 111 00000 333333 8 000000000 7777777777777777777 1111 33 77777777777 888888 0 0 55555 777 000000000 0 0
lowQualScore : .. . ...... .. ... . . ... . . . ...... . ... .. . . .. . ............. .. . .. ............ .. .... ....... ............................................................................... ... . .. . . .... . .. . . . . .. . . .... ... ..... ...... . ......... ................... .... .. ........... ...... . . ..... ... ......... . .
lowQualScore : 99 1 111111 88 666 1 2 111 2 4 7 222222 5 444 99 1 1 77 9 8888888888888 44 0 33 888888888888 22 5555 7777777 8888888888888888888888888888888888888888888888888888888888888888888888888888888 888 8 00 2 8 2222 6 99 3 7 6 1 99 1 7 1111 888 00000 000000 0 000000000 5555555555555555555 2222 88 55555555555 888888 2 0 00000 555 000000000 0 0
consensus : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATCGTTGTAAGAGCATTGTTATAAGTA--GTATCTTGAATGTGGCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
Reference ( family-4923 ) : TAATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATCATTGTAAGAGCATTGTTATAAGTA--GTATCTTGAATGTGGCATATACATAA-T-----------A-GAA-TATTNTATCTTCAG--TTA------------TTTT--GC----ATCA-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-ATTTTTTCA---AT-TTTTGAAGACATAAGTATTCGAAAT--TTGTTCATATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|1 : TAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A-ATACA-AACATGTTATTTA---TGAAAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCA---ACAATAAATCGTTA----AACATTGTTATAAATA--ATATTTTGGATATGGCATATACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|10 : ATTGTG--ATAAA------AGGCA--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------AAAGAT-GTCA---ACTATAAATCATTGTAAGAGCATTGTTATAAGCA--GTATCTTGAATGTGGCTTATACATAA-T-----------A-GTA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------TCAATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACt
gi|11 : caagacacaagatacaaagtttGTG--ATATG------AGGCC--TCCAGCCAACAACATATCTTACATACA-AGCATGTTTATAA---TGAA-T-TATACACAATGT-ATA-A-TGCTTTTGAAT------TAAGAG-GTTA---ACACTAAATTGTTACAAGAATATTATTATAAGTA--ATGTTTTGAATAT----CATGCATTA-T-----------G-AGA-TATTATATCTTCAG--TTA------------TTAT--GT----ATCA-------TCATTAACTTCTTACGTT--------------T------CTC----A-------------AGTGTGT---------------AACAA---ATGTAACAAGCAACTGATT--GCAGC-ACTTTTTTATTCAT-TTTatat
gi|12 : AAATGTGCACACGATGT-GAA-AATGAATTTGAATTTAAAATAAGGTAATCG---ACATGAAATCATT---------TTGTTATGAGTAAGGCATC--AAATAAGGCATAAACATGG-T-----------CTGAAGTA--ATACATTTAG--TTA------------TTTT--GC----GTCA-------AAA--------------TAAACCCC-------T------TAC----AAATAAAATAAATCA-----C---------------AATTA---ACATAACAAGCGGCCCGTTGCGCAGC-ATTTTTTTT---TT-TTTTTAA-ATTTAAGTGTGCGGAAT--TTGTTCA
gi|14 : ATTGTG--ATATA------AGGCC--TCCAACCCACAACACAC---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATCATTGTAAGAGCTTTGTTATAAGCA--GTATCCTGAATGTGGCATATACATAA-C-----------A-GAA-TATTGTATCTTCAGT-TTT------------TTTT--GT----ATCA-------TCA--------------T--------------c
gi|15 : cagatacaagatacaaagtttATCGTG--ATATACATGTAAGGCC--TCCAGCCCACAATTCAT---A-ATACA-TACATGTCAATTATTATGAAAT-TGTACACCATGT-AAA-AATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATCATTGTAAGAGCATTGTTATAAGCA--GTATCTTGAATGTGGCATAc
gi|16 : atacaagatacaaagttt--TCAAGCCATCAACATAT---C-ATACA-AACATGTAAATTA---TGAAAG-TGTACACGATGT-AAA-AATGCATCTGAAT------GAAGAT-GTCA---ACAATAAATCATTGTTAGAGCATTGTTATAAGCA--GTATCTTGAATGTGGCATATACATAA-T-----------A-
gi|17 : gtttatctactaagcgaccgaTTGTG--ATATA------AGACC----------ACAACACGT---A-ATACA-AACATATTAATCA---TGAAAC-TGTACACGATGT-AAA-AATACAACTGAAT------TAAAAT-GTCA---ACAATAAATCATTATAAG---------------A--ATATCTTGAACATAGCATA
gi|18 : aacacacatgcagtaatgtacaggttatcGTG--ATGCA------AGTCC--TCAAGTTTAAAACACAT---A-ATACA-AAAATGCTAATAA---TG-AAT-TGCACACGATGT-AAA-AATGAATTTGAAA------TAGGCT-ATCA---ACA
gi|19 : agtttaaATTGTGCAATATA------AGGCC--TACGGCCCAAAACACAT---A-tgatttaatacaaagtatgcggaatgtattcatattgatattagattgttg
gi|2 : cataatgtttatatttaaatctgaacaattaaaaagtgattgaattaatgacattaatagggaaaatgcacgtcaagatacaagatacaaagtttTAATTGTG--ATATA------AGGCC--TCAAGCCCACAACACAT---A-ATACA-AACATGTTATTTA---TGAAAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCA---ACAATAAATCGTTA----AACATTGTTATAAATA--ATATTTTGGATATGGCATGTACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CATCCCGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTCTCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATATGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTGGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCCAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCTttcatgc
gi|20 : ATTGTG--ATATA------AGGCC--TCCAGCCCACAA
gi|21 : caagagcagaagaatacaaagtttATTGTG--ATAAG------AGGTA--TCCAGC--------------A-GTTCACAACATGATGAATA---GGAAAC-TGTGTGAGATGC-CAATAATGCATagaagaaaaaaactgattcaaacaaaaaaatcaggtacaaatgtact
gi|22 : aatatacaaatttcATTGTG--ATATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGT
gi|24 : tacaagatacaagctacaaagtttTTGCG--ATA-A------AGGCC--TCCAGCCCTAAACAC-----A-ATACA-AA
gi|3 : caaatacaaaaaacaaaactttgTAATTGTG--ATATA------AGGTC--TCAAGCCCACAACACAT---A-ATACA-AACATGTTATTTA---TGAAAT-TGTACACGATGT-AAA-AATGCATTTGAAT------TACGAT-GTCA---ACAATAAATCGTTA----AACATTGTTATAAATA--ATATTTTGGATATGGCATATACATAA-T-----------A-GAC-TGTTTTGTCTTCAA--TGA------------CTTT--GC----ATCG-------TCA--------------T--------------T------TTC----A-------------A-----C---------------AATAA---ATGTAAGATGCAACTGATT--GCAACTATTTTTTCA---AT-TTTTGAAGACATAAGTATTCAAAAT--TTGTTCAGATT-ACAATGACAAAA--AGTATTTTTGTGGAATATA-CACCCTGCGAAGAT----AAGAGTAAGCTGCACAT--TGAAAT-----AAAACGATACTCGTTATCTACCTCATTTGAT------GTACATAGTTTACAAAGCCGTAA-GTTCTTATGATT---------CATTACAGTT-------------------TCT----ATTGCTAGTGGATATCT--AGATATA-----------AGTCAT------GATTATAAGTTAGTTTATATTCTATGTGA-AAACACTATTTAGACGATGTATTTATTGATTCTAACCAGCTCTGTATATATTTGTGT-----ATG---AGC---------CATGAACACCCTTTCATTTT-GCAC-ATGTTGGTTTATCCACACAAACTCATTTGAACAAAGAATTCGTCTGACCTTGCCGACCCAGTTAGTTCTTCCCCTTTTGTCTAATACTTTCAATATATTATTACATTTTTAATATACCTATAACACACTCAAATCTGCCGTTAATTGCCTATTTGTTCTCTTCGGTAAGTCTGATCT
gi|4 : TACATAAGT-----------A-GA--TATTATATCTTCAG--TTA------------TTTT--GC----ATCACATCAATTCA--------------T--------------TACGATATTC----A-------------AATGTAT---------------AATAA---AGGTAACAAGCAACCGATT--GGAACGATTTTTTTA---AT-TTTTTAAGAGATATGTATTCGGAAT--GTGTTCATACT-AGAGTGATGAAAGTAGT-TTTTTGTGGAATGTG-TACCTCACGCAGAT----AAAATAAAGCTGTACATATTAATAA-----AAAATGATACTCATCCTCAACTTCATTTAAT------GTACATAGTTTGCAAACTCGTAA-GTTCTTATCACTATTATGCTGCCTTACGGTTTTGCATTATGTGAATCAGATCTGAACATAGCCAGTGAATATCTAAAGATCTAACGGGCGAAATAGCTATATATCTGACCATGAATTAGTTTATATTATTTTTTATAAACACAGTTTGGACGATGCGTTAATTGATTCTTTCAAGCTCTACATCTGTTGGTCTTTTAAATGTCTAACTAATAACAACATAAACACATTTTTATTTTGGCATAATATTGGTTTA
gi|5 : aggATTGTG--ATA--------AGGCC--TCCAGCCCACAACACATGT-A-ATACA-AATATGTTAATTA---TGAAAT-TGTACACAATGT-AAA-AATGCATTTGAAA------TCAGAT-GTCA---GCAATAATTCGCAATAAGAACATTGTTTTAAGTA--ATACTTTGAAGATGGCATATACAT-----------------GAA-TATTTAATCTTCAG--TTT------------CTTT--GC----ATCA-------TCA--------------TCAATTCCTTACATTT------CTC----A-------------AATGTGT---------------AATAA---ATGTACCTGGCAACTAACT--GCAAC-AATTTTTCA---TT-TCTTGAAG----AAGTATTTGAAAT--TTATTCATATT-ACATTGACAGAA--A-TATGTTTGTGGAATATA-TACCCCACGAAGATATTAAACAGTAAGCTGTACA-----AAATAATAAAAAGTGACGCTCGTCCTCTACCTCATTTGATGTACCGGTACATAGTTTGCAAACCCATAATGTTc
gi|6 : aagatacaaaatacaaagtttATTGTG--AAATA------AGGCC--TCCAGCCCACAACACAT---A-ATACA-AACATGTTAATTA---TGAAAT-TGTACACGATGT-AAA-AATGCATCTAAAT------TAAGAT-GTCA---ACAATAAATTATTGTAAAATCATTGTTATAAGTA--GTATCTTGAATGTGGCATATACATAA-TATTGTATATAAA-GAA-TATTGTATCTTCAG--TTA------------TTTT--GT----ATCA-------TCA--------------T--------------CAA----TTC----ATT-----------A-----CGTTTCTCGAATGCGTAATAC---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCATTTTT-TTTTAAAAACATAAGTATTCGGAAT--TTGTTCATAAT-AGAATGAC-AAA--AGTACTTTTGTGGAATATA-TACCCCACAAAGAT----AAGAGTAGGCTG
gi|7 : acaagctacaaagtttATTGAG--ACCTA------AGGCCGGTCCAGCACACAACACAT---A-ACA---------------------GAGT-TGTACATAATGTGAAA-AATGTACTTGAAA------TAA----ATCATTTGTAACAGAACATTATAA---CATTG-TACAAAAA--GGACATCAACTGAGACATACATGTAA-T-----------ATGAA--ATAATATCTTCAG--TCAAACTATCTCTTTTTTT--GTCAAAATCAACTTT--TCA--------------TA-------------T------TTCATATA-------------A-----CGT-------------AACAA---ATGTAACA-GCAACTGTTT--GTACCGATTTT-------ATGTTTTGAAAATAAAAGT-TT--AAATACTTTTTGATATTGACATTTA-AGAA--AGTA--------GAAGGTATTTTCTCACCAAGAT----AAAAGTAAGCT
gi|8 : gatacaatatcagttttcaaattttATTATG--ATATA------AGGCC--TCCAACCTACAACACAT---A-ATACA-AACATGTAAATTA---TGAAAT-TGTACACGATGT-AAAGAATGCATCTGAAT------TAAGAT-GTCA---ACAATAAATCATTGTAAGAGCATTGTTCTAAGCA--GTATCCTGGATGTGGCGTATACATAA-T-----------A-GAA-TATTGTATCTTCAGTTTTT------------TTTT--GT----ATCA-------TCA--------------TCTATTCTTTACG--T------TTCTCG-A-------------ATGCG-T---------------AATAA---ATGTAACATGCAACTGATT--GCAAC-AATTTCTCA---TT-TTTTGTAGACATAAGTAT
gi|9 : acagatacaagatacaaagtttATTGTG--ATAAA------AGGCC--TCAAGCACACAACACAT---A-ATACA-AAAATGGTAATTA---TGAAAT-TGTATACGATGT-AAA-AATGCATTTGTAT------TAAGAT-ATCA---ACAATAAATAGGTAGAAGAACATTGTTATAAGTA--ATATTTTGAATAGAGCATATATGTTA-T-----------A-GAA-TATTTTATATTCAT--TTT------------TTTTCAGC----ATCA-------TCAATTCCCTTTGT---T--------------T------CTC----A-----------------------------------AATGCGTTATGTAATACGCAACTTATT--GGAAC-ACTTTTTC----AT-TTTctcattt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTTAAGTGTCCCAGAATCGAACGCATTTTGGTAGTGTTGTTACCATCGTCATCGTCATCAAGGTAGGCATACACTTCCTAACTGCGTGCTGTCTTAAGGGCCTACGCAGTTGCTAGTGACTACTACTTGCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|23 ): ATACCAAATATATACAAGATACAGCGTTTATTGTGAAATATATGACCTCCAACCAAAAATACATA
Unaligned ( gi|25 ): ACAAAACACAAATTACAAAGTTTATTTTTATATAAGACTTCTAGGCCGCAACTGATAA