lowQualScore : 11111111111
lowQualScore : 2222222 1 333333333 1 11111111111 1 111 3333 22222222222
lowQualScore : 3333333 2 888888888 2 2 3 3 77 5 22222222222 3 1 0 999 8888 3 0 7 4 5555 2 2 2 11111111111 3 55 0 2 999
lowQualScore : ....... . ......... . . . . .. . ........... . . . ... .... . . . . .... . . . ........... . .. . . ...
lowQualScore : 0000000 6 999999999 9 1 7 1 99 0 00000000000 7 2 0 555 5555 4 4 8 0 3333 7 5 4 44444444444 2 33 1 5 777
consensus : NNNNNNAAAAAAAAT--T---TGGTTTCCGATCAATA--G-NGN--GGG-CATTCGTGTCGAC-AGACAC-ATTTCTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTGTCAA----CATTG-AGTNATAG-CCC-ATTTTTAACTTAATTTTCGGTA-AA-A--AAT-T-GG-TTTCCGATCAA---TAGCGG--GGG--CATTCGTGTCGAC-AGACA-C-ATTTCTAG
Reference ( gi|1 ) : TTAAAAAAAAAAAAT--T---TGGTTTCGGATCAATA--A-AGT--GGG-CATTTGTGCCAAC-AGACAT-ATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTATCACTATAGTCATAG-CCC-ATTTTCGCCTTAATTTTCAGCA-AA-A--AAT-T-GG-TTTCTGATCAA---TGGTGC--GAG--CATTTGTATCAAC-AGACA-T-ATTTCTAG
gi|10 : AAAATAAAT--T----GGTTTTCAATCATTA--G-CATTAGGG-CACTTGTATCGAC-AAACAC-TTTTC
gi|20 : tttactttcagtAAAAAAAT--A----GGTTTCTGATCAACA-----GT--GGGGCATTTGTctagtta
gi|8 : ttaattttcagtAAACAAAT--C----AGTTCCTAATCAGTA-----GCA-GGG-CATTCGCACCAAC-AGACTC-ATTTC
gi|2 : cggtcgtaggtctatttttttactttttggtAAAGAAT--T----GGTTTCTGATCA--A--A-AGTGGGGG-CATTCGTATTAAC-AAACACAATTTCaggtt
gi|4 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaggggtatttgtatttgattaaaatgtcgtttgtatgacactttctttatttaaaatcttcggtAGAAAATAAT---TGGTTTCTGATCAATA--A-CGG--GGG-CATTTGAGTCAAC-AGATGC-ATTTTTA
gi|3 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcatcAGAAAATAAT---TGGTTTCTGATCAATA--A-CGG--GGG-CATTTGAGTCAAC-AGATGC-ATTTTT
gi|7 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcatcAAAAG--T---TGGTTTCTGATCAATA--A-CAA--GAC-CATTCACGTCAACAAGATAC-AGTTCTA
gi|13 : aaagttattgccttttttactgatttttcagtacAAAT--TGGTTGGTTTCAGATCAATAGCA-A----GGT-CATTTTTATTGAC-AGACAC-ATTTCCAg
gi|14 : AAAT--T----GGTTTCCCATCAATA--GCAG---GGG-CATTTG-GTTGAC-AGGGAC-ATTTCTAGTTTg
gi|15 : AAT--A---TGGTTTCTGATTGAT-----AGTTGGGG-TAATCGTGATGAC-AGACAC-ATTTCTA
gi|17 : T--T---TGGTTTCGGATCAATA--A-AGT--GGG-CATTTGTGCCAAC-AGACAT-ATTTCTATTgt
gi|16 : --T---TGGTTTCTGATCAATA--G-CGC--GGG-CATTTGTGCCAAC-AGACAC-ACTTGTA
gi|18 : gGGTTTCTGATCAATA--GCAG---AGA-CATTCAGGTCAAC-AAACAC-ATTTCTAatc
gi|19 : tgTTTCCAATCAACA--G-TGG--GGG-CATTTGTAATAAC-AGGCAC-AT---TATTTTAg
gi|6 : TATTTGTCAA----CATTG--GTAATGG-CCCCATTTT-ACCTAAATTTTT-GTA-AA-A--AAT-T-GGATTTCAG-TCAAAAGCGGTG-----G--CATTCTTATCACC-ATACA-C-a
gi|7 : AGTTATTG-CC---TTTTTTACTGATTTTTCAGTACAA-A--AGT-T-GG-TTTCTGATCAA---TAACAA--GAC--CATTCACGTCAACAAGATA-C-AGTTCTAGa
gi|8 : aaGTCGTAGGTCT-ATTTTT---TTACTTTTTGGTA-AACA--AAT-C-AG-TTCCTAATCAG---TAGCA---GGG--CATTCGCACCAAC-AGACT-C-ATTTC
gi|9 : cgAG-CCC-CTTTTCAAATTA-TTTTTGGTA-AA-A--AAT-T-AG-TTTTCGATCAG---TAGT-C--GGG--CATTTaggtt
gi|20 : ttcaaatcaatagcgaacctaTTAATTTTCAGTA-AA-A--AAA-TAGG-TTTCTGATCAA---CAGTG---GGG--CATTTGT
gi|10 : TTTACTTTCAGTA-AA-ATAAAT-T-GG-TTTTCAATCAT---TAGCATTAGGG--CACTTGTATCGAC-AAACACT-TTTCCTAG
gi|12 : TAATTTTCAGTA-AA-A--AAA-T-AG-----TGATTAC---TAGC-C--AAG--TATTTGTGTCTGC-AGAC----ATTTCTAGtta
gi|2 : AATCTTCGGTA-AA-G--AAT-T-GG-TTTCTGATCAA---AAGTGG--GGG--CATTCGTATTAAC-AAACA-CAATTTC
gi|4 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaggggtatttgtatttgattaaaatgtcgtttgtatgacactttctttatttaaTCAGAA-AA-T--AAT-T-GG-TTTCTGATCAA---TAACGG--GGG--CATTTGAGTCAAC-AGATG-C-ATTTTTA
gi|3 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaTCAGAA-AA-T--AAT-T-GG-TTTCTGATCAA---TAACGG--GGG--CATTTGAGTCAAC-AGATG-C-ATTTTT
gi|14 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatca-A--AAT-T-GG-TTTCCCATCAA---TAGCAG--GGG--CATTTG-GTTGAC-AGGGA-C-ATTTCTAG
gi|15 : --AATAT-GG-TTTCTGATTGA---TAGTTG--GGG--TAATCGTGATGAC-AGACA-C-ATTTCTAGttt
gi|17 : T-T-GG-TTTCGGATCAA---TAAAGT--GGG--CATTTGTGCCAAC-AGACA-T-ATTTCTAt
gi|16 : tT-T-GG-TTTCTGATCAA---TAGCGC--GGG--CATTTGTGCCAAC-AGACA-C-ACTTGTAtt
gi|13 : gT-T-GG-TTTCAGATCAA---TA--GC--AAGGTCATTTTTATTGAC-AGACA-C-ATTTCCAGatc
gi|18 : aaattgg-GG-TTTCTGATCAA---TAGCA---GAGA-CATTCAGGTCAAC-AAACA-C-ATTTCTAG
gi|19 : tg-TTTCCAATCAA---CAGTGG--GGG--CATTTGTAATAAC-AGGCA-C-ATT
gi|21 : TGATCAA---AAGTGG--GGA--CATTCTTATCAAT-AGACA-C-attttaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TGTCTGTCCGTTTGTTATTGGTAAAGGGATTTCCAATCAATAACTAATCAAGGGGTCTATGTTTTTAATTAATATGAGTTAACAGGCTTTTTTCTCTATTTAAAATTAGGTAGACTATTGGTTTCCATTCAACAGCAGGGGCATTCATGTCA
Unaligned ( gi|11 ): AAAAAGGTTTCCAACCAAAAGCAGAGGCATTGGTGTCAATAGACACTTTTCTGGTATTACATTTTAC
Alignments
lowQualScore : 4 3333333333333333333333333333333 4444 11 11 222222 111
lowQualScore : 0 6 1 1 6 8 6 3 2 1111111111111111111111111111111 2 2222 33 1 8 6 44 555555 0 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . . . . . ............................... . .... .. . . . .. ...... . . . .. . ... . . ... . .. . . .
lowQualScore : 0 5 0 0 0 8 0 2 5 0000000000000000000000000000000 5 5555 22 0 0 7 88 111111 9 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTNTCAATTATCACTG-AGTCA-TAG-CCC-TTTTTN---ACTTAATTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAA-AAATTTGGTTTCCGATCAATAGNGNGGGCATTCGTGTCGACAGACACATTTCTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTGTCAA----CATTG-AGTNA-TAG-CCCATTTTTA---ACTTAATTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTATCACTATAGTCA-TAG-CCCATTTTCG---CCTTAATTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTACTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAATTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : TTTA---A---AATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaggggtatttgtatttgattaaaatgtcgtttgtatgacactttctttaTTAATTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaTG-AGTTAACAG-GCT-TTTTTCTCTATTTAAAATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtctatgtttttaattaataTATTTGTCAA----CATTG--GTAA-TGG-CCCCATTTTA---CCTAAATTTTTG-TA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : -AGTTA-TTG-CC--TTTTTT---ACTGATTTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaGTCG-TAGGTCTATTTTT------TTACTTTTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cgAG-CCCCTTTTCA---AATTA-TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt
Alignments
lowQualScore : 1111 1 11 111111 111
lowQualScore : 1 1 4 3 2 1 6 3333 2 33 1 8 8888 444444 55 1 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . . . .... . .. . . .... ...... .. . . . .. . ... . . ... . .. . . .
lowQualScore : 0 0 2 2 5 0 7 0000 0 22 4 0 4444 111111 55 4 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTA-CACTG-AGTCA-TAGCCC-T-TTTTT---ACTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTNTCAATTATCACTG-AGTCA-TAGCCC-T-TTTTN---ACTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTATCACTATAGTCA-TAGCCCAT-TTTCG---CCTTAA--TTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTA--CTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAA--TTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : CT-T-TCTTT---ATTTAAAATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaggggtatttgtatttgattaaaatgtcgtttgtatgacaTTAA--TTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaATGTTTTT-AATTAATA-TG-AGTTAACAGGCT-T-TTTTCTCTATTTAA--AATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtctTATTTGTCAA----CATTG--GTAA-TGGCCC-C-ATTTT---ACCTAA--ATTTTTGTA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : -AGTTA-TTGCC--T-TTTTT---ACTGAT--TTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaGTCG-TAGGTC-TATTTTT-----TTAC--TTTTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cgAGCCC-C-TTTTC---AAATTA--TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt
Alignments
lowQualScore : 2222222 11 1111111 111
lowQualScore : 1 1 4 3 2 6 0000000 33 1 8 666 2222222 55 1 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . . ....... .. . . ... ....... .. . . . .. . ... . . ... . .. . . .
lowQualScore : 0 0 2 2 5 7 3333333 22 4 0 444 9999999 55 4 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTA-CANTG-AGTCA-TAGCCCT-TTTT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTA-CACTG-AGTCA-TAGCCCT-TTTT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTTTTCAATTATCACTATAGTCA-TAGCCCA-TTTT---CGCCTTAA--TTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTA--CTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAA--TTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : CTT-TCTT---TA-TTTAAAATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaggggtatttgtatttgattaaaatgtcgtttgtatgacaTTAA--TTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaATGTTTTT-AATTA-ATATG-AGTTAACAGGCTT-TTTTCTCTA-TTTAA--AATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtctTATTTGTCAA----CATTG--GTAA-TGGCCCC-ATTT---TA-CCTAA--ATTTTTGTA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : -AGTTA-TTGCC-T-TTTT---TA-CTGAT--TTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaGTCG-TAGGTCTATTTT---T---TTAC--TTTTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cgAGCCCC-TTTT---CA-AATTA--TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt
Alignments
lowQualScore : 111 11 2222222222222 1111111 111
lowQualScore : 1 1 4 3 2 777 6 3 22 1 2222222222222 5 5 2222222 55 1 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . ... . . .. . ............. . . ....... .. . . . .. . ... . . ... . .. . . .
lowQualScore : 0 0 2 2 5 555 5 2 55 0 6666666666666 7 7 9999999 55 4 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATTA-NANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTT---TTCAATTA-CANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTT---TTCAATTATCACTATAGTC------A-TAGCCCA-TT-TT---CGCCTTAA--TTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTA--CTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAA--TTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : GGGGTATTTGTATTTGATTA-AAATG---TCGTTTGTA-TGACACT-TTCTT---TA-TTTAAAATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaTTAA--TTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaATGTTT---TT-AATTA-ATATG-AGTT------AACAGGCTT-TT-TTCTCTA-TTTAA--AATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtctTATTT---GTCAA----CATTG--GTA------A-TGGCCCC-AT-TT---TA-CCTAA--ATTTTTGTA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : -AGTT------A-TTGCC-T-TT-TT---TA-CTGAT--TTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaGTC------G-TAGGTCTATT-TT---T---TTAC--TTTTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cgAGCCCC-TT-TT---CA-AATTA--TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt
Alignments
lowQualScore : 111 222222222222222222222222 1111111 111
lowQualScore : 1 1 4 3 2 444 3 222222222222222222222222 5 5 2222222 55 1 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . ... . ........................ . . ....... .. . . . .. . ... . . ... . .. . . .
lowQualScore : 0 0 2 2 5 000 2 111111111111111111111111 7 7 9999999 55 4 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATT--A-NANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATT--A-NANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTT---TTCAATT--ATCACTATAGTC------A-TAGCCCA-TT-TT---CGCCTTAA--TTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTA--CTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAA--TTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : GGGGTATTTGTATTTGATT--A-AAATG---TCGTTTGTA-TGACACT-TTCTT---TA-TTTAAAATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaTTAA--TTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaATGTTT---TT-AATT--A-ATATG-AGTT------AACAGGCTT-TT-TTCTCTA-TTTAA--AATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtctTATTT---GTCAA------CATTG--GTA------A-TGGCCCC-AT-TT---TA-CCTAA--ATTTTTGTA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : -AGTT------A-TTGCC-T-TT-TT---TA-CTGAT--TTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaGTC------G-TAGGTCTATT-TT---T---TTAC--TTTTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cg---TTCAAATCAA-TAGCG-AACC------T-AAGCCCC-TT-TT---CA-AATTA--TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt
Alignments
lowQualScore : 111 222222222222222222222222 1111111 111
lowQualScore : 1 1 4 3 2 444 3 222222222222222222222222 5 5 2222222 55 1 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . ... . ........................ . . ....... .. . . . .. . ... . . ... . .. . . .
lowQualScore : 0 0 2 2 5 000 2 111111111111111111111111 7 7 9999999 55 4 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATT--A-NANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATT--A-NANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTT---TTCAATT--ATCACTATAGTC------A-TAGCCCA-TT-TT---CGCCTTAA--TTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTA--CTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAA--TTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : GGGGTATTTGTATTTGATT--A-AAATG---TCGTTTGTA-TGACACT-TTCTT---TA-TTTAAAATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaTTAA--TTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaATGTTT---TT-AATT--A-ATATG-AGTT------AACAGGCTT-TT-TTCTCTA-TTTAA--AATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtctTATTT---GTCAA------CATTG--GTA------A-TGGCCCC-AT-TT---TA-CCTAA--ATTTTTGTA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : -AGTT------A-TTGCC-T-TT-TT---TA-CTGAT--TTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaGTC------G-TAGGTCTATT-TT---T---TTAC--TTTTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cg---TTCAAATCAA-TAGCG-AACC------T-AAGCCCC-TT-TT---CA-AATTA--TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt
blockSeqs : T C C T G GTA T TTAAAATGTCGTTTGTA A C CTCTAT AA A C C TA A AAA T ATT A AT A A C
blockSeqs : G A T T C . C ATCAATAGCGAACCT . . TAT . A . . . . AAA . A G AT . . .
blockSeqs : C T G . . . C TTAATATGAGTTAA . . TAC . G . . . . A . A G G . . .
blockSeqs : . . CATTGGTAA . . TAC . A . . . . . . A A A . . .
blockSeqs : . . CAA . A . . . . . . T G T . . .
blockSeqs : . . T . A . . . . . . A G G . . .
blockSeqs : . G . . . . . . G G G . . .
blockSeqs : . T . . . . . . G A G . . .
blockSeqs : . A . . . . . . A A A . . .
blockSeqs : G . . . . . . G G A . . .
blockSeqs : G . . . . . . A G A . . .
blockSeqs : . . . . . . G G A . . .
blockSeqs : . . . . . . A A A . . .
blockSeqs : . . . . . . G G A . . .
blockSeqs : . . . . . A A A . .
blockSeqs : . . . . A . A . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : TCAATATGGCTAA*********** TAC****
originalCons : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATT--A-NANTG-AGTC------A-TAGCCCT-TT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
finalCons : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCAATCAATATGGCTAA-----------TAGCCCT-TT-TTTAC----TTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Alignments
lowQualScore : 111 11111 3333333333333333 111 111
lowQualScore : 1 1 4 3 2 777 88888 8 3333333333333333 5 000 5 1 555 1 2 2 33 2 000 0 2 999 1 77 2 2 2
lowQualScore : . . . . . ... ..... . ................ . ... . . ... . . . .. . ... . . ... . .. . . .
lowQualScore : 0 0 2 2 5 555 88888 0 8888888888888888 7 000 7 1 666 4 7 5 22 4 000 2 0 555 8 55 4 4 7
consensus : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCA---A-TCAATATG-GC---TA-AC---GGCCCTTT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
Reference ( family-4710 ) : NNNNNNAAAAAAAAATTTGGTTTCNGATCAATAGNGCGGGCATTTGTGCCAACAGACACATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGGGATATTT---TTCA---A-TCAATATG-GC---TA-AT---AGCCCTTT-TT---TA-CTTAA--TTTTCGGTA-AA-A--A-AT---TGGTTTCCGATCAATAG-CG--GGGGCATTCGTGTCG-AC-AGACAC-ATTT-CTAG
gi|1 : AAAAAAAAATTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTTTATTTTTAGAATTATTTGACCACTTTCTCGAGATATTT---TTCAATTA-TCACTATA-G----TC-AT---AGCCCATT-TT---CGCCTTAA--TTTTCAGCA-AA-A--A-AT---TGGTTTCTGATCAATGG-TG--CGAGCATTTGTATCA-AC-AGACAT-ATTT-CTAG
gi|10 : ttaaaTTTA--CTTTCAGTA-AA-ATAA-AT---TGGTTTTCAATCATTAG-CATTAGGGCACTTGTATCG-AC-AAACAC-TTTTCCTAG
gi|11 : -AA-A--A-A-----GGTTTCCAACCAAAAG-CA--GAGGCATTGGTGTCA-AT-AGACAC-TTTT-CTGGtta
gi|12 : TAA--TTTTCAGTA-AA-A--A-AA---TAGT----GATTACTAG-C---CAAGTATTTGTGTCT-GC-AG--AC-ATTT-CTAGtattacattttac
gi|13 : T---TGGTTTCAGATCAATAG-CA--AGGTCATTTTTATTG-AC-AGACAC-ATTT-CCAG
gi|14 : aaattgg-A--A-AT---TGGTTTCCCATCAATAG-CA--GGGGCATTTG-GTTG-AC-AGGGAC-ATTT-CTAG
gi|15 : --A-ATA--TGGTTTCTGATTGATAG-TT--GGGGTAATCGTGATG-AC-AGACAC-ATTT-CTAGttt
gi|16 : TTGGTTTCTGATCAATAGCGCGGGCATTTGTGCCAACAGACACACTTGTAt
gi|17 : gTTTGGTTTCGGATCAATAAAGTGGGCATTTGTGCCAACAGACATATTTCTATTatc
gi|18 : GGTTTCTGATCAATAG-CA--GAGACATTCAGGTCA-AC-AAACAC-ATTT-CTAG
gi|19 : tgTTTCCAATCAACAGTGGGGGCATTTGTAATAACAGGCACAT---TATTTTA
gi|2 : GGGGTATTTGTATTTG---A-TTAAAATG-TCGTTTGTAT---GACACTTTCTT---TA-TTTAAAATCTTCGGTA-AA-G--A-AT---TGGTTTCTGATCAAAAG-TG--GGGGCATTCGTATTA-AC-AAACACAATTT-a
gi|20 : tgtccgtctgtgttttgtccatccgaggtaaacaattggcttccatcaataactttaaaTTAA--TTTTCAGTA-AA-A--AAAT---AGGTTTCTGATCAACAG-T---GGGGCATTTGT
gi|21 : GATCAAAAG-TG--GGGACATTCTTATCA-AT-AGACAC-A
gi|3 : tA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|3 : cTCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttt
gi|4 : cagaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaA-GA-A--A-ATAAATGGTTTCCATTCAGTAA-CA--GGGGCATTTGT-TCATAC-AGACAC-TTTT-CT
gi|4 : TCAGAA-AA-T--A-AT---TGGTTTCTGATCAATAA-CG--GGGGCATTTGAGTCA-AC-AGATGC-ATTT-TTAgatagtgtgacatatgacagatacctactactgagttatcatcagaaaataattggtttctgatcaataacgggggcatttgagtcaacagatgcattttta
gi|5 : agaaaataaatggtttccattcagtaacaggggcatttgttcatacagacacttttctgatagtgtgacatatgacagatacctactactgagttatcaATGTTT---TT-A---A-TTAATATGAGT---TA-AC---AGGCTTTT-TTCTCTA-TTTAA--AATTAGGTA-GA-C--T-AT---TGGTTTCCATTCAACAG-CA--GGGGCATTCATGTC
gi|6 : tgtctgtccgtttgttattggtaaagggatttccaatcaataactaatcaaggggtct-TCAACATT-GG---TA-AT---GGCCCCAT-TT---TA-CCTAA--ATTTTTGTA-AA-A--A-AT---TGGATTTCAGTCAAAAG-CG--GTGGCATTCTTATCA-CC-ATACAC-Aa
gi|7 : tatttgCCTTT-TT---TA-CTGAT--TTTTCAGTACAA-A--A-GT---TGGTTTCTGATCAATAA-CA--AGACCATTCACGTCA-ACAAGATAC-AGTT-CTAGa
gi|8 : aaagttattgTTT-TT---TA-CTT------TTTGGTA-AACA--A-AT---CAGTTCCTAATCAGTAG-CA--GGG-CATTCGCACCA-AC-AGACTC-ATTT-
gi|9 : cggtcgtaggtctat---TTCA---AATCAATA---GC---GA-ACCTAAGCCCCTT-TT---CA-AATTA--TTTTTGGTA-AA-A--A-AT---TAGTTTTCGATCAGTAGTC----GGGCATTaggtt