lowQualScore : 11111 111 4444444 333333333333 111 3333333333333333 2222222222222222 2222222 1111 77777777 5555555555555 11 55555555 1 1 1 22 1
lowQualScore : 77777 2 77777 33 000 0000000 000000000000 1 1 55555 333 0 44 77 2 0000000000000000 8 5 2 6666666666666666 55 5555555 7777 99999999 7 5555555555555 88 0 1 22222222 5 5 2 7 33 6 6 6 5
lowQualScore : ..... . ..... .. ... ....... ............ . . ..... ... . .. .. . ................ . . . ................ .. ....... .... ........ . ............. .. . . ........ . . . . .. . . . .
lowQualScore : 99999 0 11111 99 999 4444444 333333333333 4 9 00000 777 1 44 55 4 8888888888888888 4 3 7 9999999999999999 00 8888888 5555 33333333 0 0000000000000 00 7 0 33333333 0 0 5 0 00 0 0 0 0
consensus : TAGTATA-----TATAA-----G--GTTN--GTTACAGCA-CAC-TTTCCA-ACGA-CCT-AAAATGACCAGCTCAC-CGAG-----TC-CGGACTCGCCCGGGCNCGTC-CGGACTC----------G-----CTGGTCATTCTGAGGCG-GTGGAAAAGTGTGCTGT-----AACNAAC--CTTATA-----T-ATACTAC-TNTA--------CCATCTACCCCCAGGCTCGC-------------CCGTGGAAAAGTTTGTTGTAACAAAC-CTTAAATATACTACTACTAATNTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
Reference ( gi|2 ) : TAGTATA-----TATAA-----G--GTTC--GTTACAGTA-TA--TTTCCA-ACAA-CTTCAGAATGACCAGCTCAC-CGAG-----TC-CTGACTCGCCCAGGCTCGTC-CAGACTC----------G-----CTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGT-----AGCGAAC--CTTATA-----C-ATACTACATGTAAAC-----CCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAAC-CT-----ATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCATA
gi|3 : TAGTATA-----TATAA-----G--GTTG--GTTAGAACA-TACTTTTCCA-CCA--CCTCAGAATGACCAGC------GAG-----TC-TGGACGAGCAATGGCGAGTC-TGGCCTC----------GGTGAGCTGGTCATT-TCAGGTG-GTGGGAGAGTGTGCTGT-----TACGAAC--CTTATA-----T-AAACT
gi|4 : TAGTATA-----TATAA-----T--GTTG--GTTACAACA-AACTTTTCCA-CGGG-CGT--AAATGACAAGC------GAG-----TC-CGGACGAGCCCAGGCGAGTC-TGGACTC----------GGTGAGCTGGTCATTCTGAGGTG-GTGGAAAAGTGTGCTGC-----AACCAAC--CTTATA-----T-ATACTgtaccatctaccccaaggctcgtccgtggaaaaatttgttgtaacaaacatta
gi|6 : aTAGTATA-----TATAA-----G--GTTT--GTTGCAACA-AA--GTTCCACACCA-CCTCAAAATGACCAG------CGAG-----CC-TTGACGAGCCTGGGCGAGTCACA-ACTC----------GGTGATCTGGTCATTatatatactattaccatctactcccaagctcac
gi|7 : tgttagTAGTATAGAACTTACAG-----G--GTTT--GGCACAGT-------TTCCC-ACAA-CCTCAGAGTGACCATCTCAC-CGAG-----TC-CAGACTCGCTCAGGCTATTC-CAGACTC----------G-----CTGGTCATTCtct
gi|8 : aagTAGTATA-----GATTATGTGTG--GTTT--GGCGCACT------TTTCCA-AAGA-CGT--AAATGACCAGCTCAC-CGAG-----TC-CAGACACGCCCAAGCTCGTC-CAGACTA----------G-----CTGGTCATTa
gi|11 : gTAGTATAGAT--TATAG-----GTGGTTT--GGCACACT-------TTTCA-ACG--CTT-AAAATGACCAGCTCAC-CCAG-----------ACTCGCACAGGCTCGTC-CAGACTC----------G-----CTGGTCATtaaaa
gi|9 : aTAGTATA-----TATAA-----G--GCTG--GTTTCAGGACTC--TTTTCT-ATCA-CTCAAGAATGACCAACTCACGCAGG-----TCGCTA--TCGCTC--------C-CAGGCTC----------G-----TTAGTCATTTT
gi|12 : cagTAGTATA-----GGAAA-----G--GCAG--GTTACGGCA-CACTTTTCCA-TCG---CTCAAAATGACCAGCTCAC-CCA-----------GACTCGCtg
gi|16 : TAGTATA-----GTTAT-----G--GTTT--ATTATAGCA-CCC-TTTTCA-ATCG-CCT-AAAATGACCATCTCAC-CGAG-----TC-tggtcattcacgccc
gi|3 : agAGTTTA-----TATAA-----G--GTTC--GTAACAGCA-CAC-TCTCCC-ACCA-CCTGA-AATGACCAGCTCAC-CGAG-----GC-CAGACTCGCCATTGCTCGTC-CAGACTC----------G-----CTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCT-----AACCAAC--CTTATA-----T-ATACTA---GTA--------CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAAC-
gi|1 : AGTACAG----TA-AA-----G--GTTT--ATTACAGCA-AACTTTTCCA-CGGG-CGT--GAATGACCAG---A---GAG-----CC-TGGACATGCCTTGGCGAGTC-TAGAATC----------GGTGAGCTGGTCATT-TAAGGCG-GTGGGAAAGTGTGatta
gi|4 : tatactaaaaatttattatagAGTATA-----TATAA-----G--GTTG--GTTGCAGCA-CACTTTTCCA-CCA--CCTCAGAATGACCAGCTCAC-CGAG-----TC-CAGACTCGCCTGGGCTCGTC-CGGACTC----------G-----CTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGT-----AACCAAC--ATTATA-----T-ATACTA-ATATATACTATTACCATCTACTCCCAAGCTCAC-------------tctactatctacccccaggcccgctggtcattcacgcccgtggaacagtttgctgtaataaaccttaaatatactactattaatctataaaatgtttccccggtttcaactcttacttagagtaatgacaat
gi|1 : aTATAC----TA-AA-----A--ATTT--ATTATAGCA-CAC-TTTCCC-ACCG-CCTTA-AATGACCAGCTCAC-CGAT-----TC-TAGACTCGCCAAGGCATGTC-CAGGCTC----------T-----CTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGT-----AATAAAC--CTT-TA-----CTGTACT---TCTA--------CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAAC-CTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|5 : ATA-----TACAA-----T--ATGCCGGTTTCAGCA-CACTTTTCCC-ACCA-TGCAAAAATGACCAGCTCAC-CCAGGCTCGTC-CGGGCTCGCCCAGGTTCGTC-CAGACTCACCCAAGCTCG-----CTGATCATTTTAAGGTG-
gi|13 : aA-CA--TTTCTA-TCA--CTGAAAAATGACCAGCTCGC-CGAG-----TC-CGGATTCGa
gi|10 : tggtatacaaactaccactttcaggac--TTTCCA--CAAGCGT--AAATGACCAGCTCAC-CGAG-----TC-CAGACTCGCCAAGGCTCGTC-CAGTTTC----------A-----CTAGTCA
gi|17 : agtagtttagattgtgggtggtttggcgctct--TTTCCA-CCA--CCTAAAAATGACCAGCTCAC-C
gi|7 : cacccctGAATGACCAG------CGAG-----TC-TGGAATAGCCTGAGCGAGTC-TGGACTCGGTGA-----G-----ATGGTCACTCTGAGGTT-GTGGGAAACT-----GT-----GCCAAAC--CCTGTAAGTTCT-ATACTACcaagctcg
gi|6 : aaAATGACCAGATCAC-CGAG-----TT-GTGACTCGCCCAGGCTCGTC-AAGGCTC----------G-----CTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGC-----AACAAAC--CTTATA-----T-ATACTACa
gi|8 : tgttaAATGACCAGCT------AG-----TC-TGGACGAGCTTGGGCGTGTC-TGGACTCGGTGA-----G-----CTGGTCATT-TACGTCT-TTGGAAAAGTtct
gi|11 : gtagtatagattatgtgtggtttggcgcATGACCAGC------GAG-----TC-TGGACGAGCCTGTGCGAGTC-TGGGTGA----------G-----CTGGTCATTTTAAG--C-GTTGAAAAGT-----GT-----GCCAAACCACCTATAATC--T-ATACTAtaaaa
gi|9 : a----------G-----TTGGTCATTCTTGAGTG-ATAGAAAAG-----AGTCCTGAAACCAGC--CTTATA-----T-ATACTAC
gi|12 : ca----------G-----CTGGTCATTTTGA-GCG-ATGGAAAAGTGTGCCGT-----AACCTGC--CTTTCC-----T-ATACTAtcacgcaggtcgctatcgctcccaggctcgttagtcatttttg
gi|17 : ----------G-----CTGGTCATTTTTAGGTG-GTGGAAAAGtcacccagactcgctggtcattcacgccc
gi|16 : cacccTGGTCATTTT-AGGCG-ATTGAAAAGGGTGCTAT-----AATAAAC--CATA-A-----CTATACTACtcacccaagctcg
gi|4 : aCGC-------------CCGTGGAAAAGTTTGTTGTAACCAACATT-----ATA-TA-TACTAATATATAtctcaccgagtc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT
Alignments
lowQualScore : 11111 1 11111111 1111111111 1 33333333333333 111 5555555555555 11111
lowQualScore : 99999 0 44 3 1 1 3 9 888 66666666 2 77777 3 8 2 4 5555555555 2 1 1 5 3 2 1 0 8 55555555555555 777 2 5555555555555 0 1 0 11111 6 1 4 4 3
lowQualScore : ..... . .. . . . . . ... ........ . ..... . . . . .......... . . . . . . . . . .............. ... . ............. . . . ..... . . . . .
lowQualScore : 11111 5 66 3 0 3 1 2 333 22222222 9 11111 7 5 3 5 9999999999 7 7 4 7 2 8 0 8 0 66666666666666 555 5 0000000000000 7 0 7 33333 0 0 0 0 0
consensus : TAGTATA-----TATAAG--GT-TGGTTACGGCACAC-TTT-CCN--AC-NAC-CT-AA-AATGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGA----------CTCGCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
Reference ( family-450 ) : TAGTATA-----TATAAG--GT-TNGTTACAGCACAC-TTT-CCA--AC-GAC-CT-AA-AATGACCAGCTCACCGAG-----TCCGGACTCGCCCGGGCNCGTCCGGA----------CTCGCTGGTCATTCTGAGGCG-GTGGAAAAGTGTGCTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCCAGGCTCGC-------------CCGTGGAAAAGTTTGTTGTAACAAACCTTAAATATACTACTACTAATNTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|1 : TATAC----TA-AAA--AT-TTATTATAGCACAC-TTT-CCC--AC-CGC-CT-TA-AATGACCAGCTCACCGAT-----TCTAGACTCGCCAAGGCATGTCCAGG----------CTCTCTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGTAATAAACCTT-TACTGTAC-------T---T-CTA---CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|10 : G--GG-TGGTT-TGGCGCTC-TTT-TCC--AC-AAG-CG-TA-AATGACCAGCTCACCGAG-----TCCAGACTCGCCAAGGCTCGTCCAGT----------TTCACTAGTCA
gi|11 : agtagtttagattgtTAGTATAGAT--TATAGG-----TGGTT-TGGCACAC-TTT-TCA--AC-G-C-TT-AA-AATGACCAGCTCACC----------CAGACTCGCACAGGCTCGTCCAGA----------CTCGCTGGTCAT
gi|12 : aTAGTATA-----GGAAAG--GC-AGGTTACGGCACAC-TTTTCCA--TC-G-C-TC-AA-AATGACCAGCTCAC----------CCAGACTCGC
gi|13 : TTTCAGGACACATTT-CTATCACTGA-----AA-AATGACCAGCTCGCCGAG-----TCCGGATTCGtggtcattcacgccc
gi|16 : tggtatacaaactaccacTAGTATA-----GTTATG--GT-TTATTATAGCACCC-TTT-TCA--AT-CGC-CT-AA-AATGACCATCTCACCGAG-----TC
gi|17 : agGCTGGTCATTTTTAGGTG-GTGGAAAAG
gi|2 : cacccTAGTATA-----TATAAG--GT-TCGTTACAGTATA--TTT-CCA--AC-AAC-TTCAG-AATGACCAGCTCACCGAG-----TCCTGACTCGCCCAGGCTCGTCCAGA----------CTCGCTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGTAGCGAACCTTATA-CATAC-------TACAT-GTAAACCCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAACC-----TATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCATtcacccaagctcg
gi|3 : AGTTTA-----TATAAG--GT-TCGTAACAGCACAC-TCT-CCC--AC-CAC-CT-GA-AATGACCAGCTCACCGAG-----GCCAGACTCGCCATTGCTCGTCCAGA----------CTCGCTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCTAACCAACCTTATA-TATAC-------TA----GTA---CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAACATTAa
gi|4 : AGTATA-----TATAAG--GT-TGGTTGCAGCACAC-TTT-TCC--AC-CAC-CTCAG-AATGACCAGCTCACCGAG-----TCCAGACTCGCCTGGGCTCGTCCGGA----------CTCGCTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGTAACCAACATTATA-TATACTAATATATAC-TATTA---CCATCTACTCCCAAGCTCAC-------------
gi|5 : aATA-----TACAATATGC-CGGTTTCAGCACAC-TTTTCCC--AC-CATGCA-AA-AATGACCAGCTCACCCAGGCTCGTCCGGGCTCGCCCAGGTTCGTCCAGACTCACCCAAGCTCGCTGATCATTTTAAGGTG-
gi|6 : aA-AATGACCAGATCACCGAG-----TTGTGACTCGCCCAGGCTCGTCAAGG----------CTCGCTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGCAACAAACCTTATA-TATAC-------TAC-T-a
gi|7 : tgttTAGTATAGAACTTACAGG--GT-TTG-----GCACAG-TTT-CCC--AC-AAC-CTCAG-AGTGACCATCTCACCGAG-----TCCAGACTCGCTCAGGCTATTCCAGA----------CTCGCTGGTCATTCct
gi|8 : aagTAGTATA-----GATTAT--GTGTGGTT-TGGCGCAC-TTTTCCA--AA-GAC-GT-AA-A-TGACCAGCTCACCGAG-----TCCAGACACGCCCAAGCTCGTCCAGA----------CTAGCTGGTCATTa
gi|9 : gTAGTATA-----TATAAG--GC-TGGTTTCAGGACTC-TTT-TCT--AT-CAC-TC-AAGAATGACCAACTCACGCAG-----GTCGCTATCGCTC--------CCAGG----------CTCGTTAGTCATTTTtaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT
Alignments
lowQualScore : 11111 1 1111111111 33333333333333 111 5555555555555 11111
lowQualScore : 99999 0 44 3 2 0 5 1 1 2 8 2 5 66666 0 5555555555 2 0 6 1 0 8 55555555555555 777 1 5555555555555 11111 1 1 1
lowQualScore : ..... . .. . . . . . . . . . . ..... . .......... . . . . . . .............. ... . ............. ..... . . .
lowQualScore : 11111 5 66 3 5 8 7 0 0 9 6 7 3 77777 5 9999999999 2 7 7 0 8 0 66666666666666 555 0 0000000000000 33333 0 0 0
consensus : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTT-CCCACCAC-CT-AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
Reference ( family-450 ) : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTT-CCNACNAC-CT-AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
gi|1 : TATAC----TA-AAA--AT-TTATTATAGCACACTTT-CCCACCGC-CT-TA-AA-TGACCAGCTCACCGAT-----TCTAGACTCGCCAAGGCATGTCCAGGCTC----------TCTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGTAATAAACCTT-TACTGTAC-------T---T-CTA---CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|10 : G--GG-TGGTT-TGGCGCTCTTT-TCCACAAG-CG-TA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCAAGGCTCGTCCAGTTTC----------ACTAGTCA
gi|11 : agtagtttagattgtTAGTATAGAT--TATAGG-----TGGTT-TGGCACACTTT-TCAACG-C-TT-AA-AA-TGACCAGCTCACC----------CAGACTCGCACAGGCTCGTCCAGACTC----------GCTGGTCAT
gi|12 : aTAGTATA-----GGAAAG--GC-AGGTTACGGCACACTTT-TCCATCGC-TC-AA-AA-TGACCAGCTCAC----------CCAGACTCGC
gi|13 : ACACATT-TCTATCAC-TG-AA-AAATGACCAGCTCGCCGAG-----TCCGGATTCGtggtcattcacgccc
gi|16 : tggtatacaaactaccactttcaggTAGTATA-----GTTATG--GT-TTATTATAGCACCCTTT-TCAATCGC-CT-AA-AA-TGACCATCTCACCGAG-----TC
gi|17 : agCTTT-TCCACCAC-CT-AA-AAATGACCAGCTCAC----------CCAAGCTCG
gi|2 : cacccTAGTATA-----TATAAG--GT-TCGTTACAGTATA-TTT-CCAACAAC-TTCAG-AA-TGACCAGCTCACCGAG-----TCCTGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGTAGCGAACCTTATA-CATAC-------TACAT-GTAAACCCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAACC-----TATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCAT
gi|3 : AGTTTA-----TATAAG--GT-TCGTAACAGCACACTCT-CCCACCAC-CT-GA-AA-TGACCAGCTCACCGAG-----GCCAGACTCGCCATTGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCTAACCAACCTTATA-TATAC-------TA----GTA---CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAACATTAa
gi|4 : AGTATA-----TATAAG--GT-TGGTTGCAGCACACTTT-TCCACCAC-CTCAG-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCTGGGCTCGTCCGGACTC----------GCTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGTAACCAACATTATA-TATACTAATATATAC-TATTA---CCATCTACTCCCAAGCTCAC-------------
gi|5 : aATA-----TACAATATGC-CGGTTTCAGCACACTTTTCCCACCATGCA-AA-AA-TGACCAGCTCACCCAGGCTCGTCCGGGCTCGCCCAGGTTCGTCCAGACTCACCCAAGCTCGCTGATCATTTTAAGGTG-
gi|6 : aA-AA-TGACCAGATCACCGAG-----TTGTGACTCGCCCAGGCTCGTCAAGGCTC----------GCTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGCAACAAACCTTATA-TATAC-------TAC-T-a
gi|7 : tgttTAGTATAGAACTTACAGG--GT-T-----TGGCACAGTTT-CCCACAAC-CTCAG-AG-TGACCATCTCACCGAG-----TCCAGACTCGCTCAGGCTATTCCAGACTC----------GCTGGTCATTCct
gi|8 : aagTAGTATA-----GATTAT--GTGTGGTT-TGGCGCACTTTTCCAAAGAC-GT-AA-A--TGACCAGCTCACCGAG-----TCCAGACACGCCCAAGCTCGTCCAGACTA----------GCTGGTCATTa
gi|9 : gTAGTATA-----TATAAG--GC-TGGTTTCAGGACTCTTT-TCTATCAC-TC-AAGAA-TGACCAACTCA-CG---------CAGG-TCGCTATCGCTC--CCAGGCTC----------GTTAGTCATTTTtaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT
Alignments
lowQualScore : 11111 1 1111111111 33333333333333 111 5555555555555 11111
lowQualScore : 99999 0 44 3 2 0 33 33 2 8 2 5 66666 0 5555555555 2 0 6 1 0 8 55555555555555 777 1 5555555555555 11111 1 1 1
lowQualScore : ..... . .. . . . .. .. . . . . ..... . .......... . . . . . . .............. ... . ............. ..... . . .
lowQualScore : 11111 5 66 3 5 8 11 66 9 6 7 3 77777 5 9999999999 2 7 7 0 8 0 66666666666666 555 0 0000000000000 33333 0 0 0
consensus : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTT-TCCACC-GC-CT-AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
Reference ( family-450 ) : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTT-CCCACC-AC-CT-AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
gi|1 : TATAC----TA-AAA--AT-TTATTATAGCACACTTT-CCCACC-GC-CT-TA-AA-TGACCAGCTCACCGAT-----TCTAGACTCGCCAAGGCATGTCCAGGCTC----------TCTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGTAATAAACCTT-TACTGTAC-------T---T-CTA---CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|10 : G--GG-TGGTT-TGGCGCTCTTT-TCCACA-AG-CG-TA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCAAGGCTCGTCCAGTTTC----------ACTAGTCA
gi|11 : agtagtttagattgtTAGTATAGAT--TATAGG-----TGGTT-TGGCACACTTT-TCAAC--GC-TT-AA-AA-TGACCAGCTCACC----------CAGACTCGCACAGGCTCGTCCAGACTC----------GCTGGTCAT
gi|12 : aTAGTATA-----GGAAAG--GC-AGGTTACGGCACACTTT-TCCATC-GC-TC-AA-AA-TGACCAGCTCAC----------CCAGACTCGC
gi|13 : ACACATT-TCTATC-AC-TG-AA-AAATGACCAGCTCGCCGAG-----TCCGGATTCGtggtcattcacgccc
gi|16 : tggtatacaaactaccactttcaggTAGTATA-----GTTATG--GT-TTATTATAGCACCCTTT-TCAATC-GC-CT-AA-AA-TGACCATCTCACCGAG-----TC
gi|17 : agCTTT-TCCACC-AC-CT-AA-AAATGACCAGCTCAC----------CCAAGCTCG
gi|2 : cacccTAGTATA-----TATAAG--GT-TCGTTACAGTATA-TTT-CCAACA-AC-TTCAG-AA-TGACCAGCTCACCGAG-----TCCTGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGTAGCGAACCTTATA-CATAC-------TACAT-GTAAACCCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAACC-----TATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCAT
gi|3 : AGTTTA-----TATAAG--GT-TCGTAACAGCACACTCT-CCCACC-AC-CT-GA-AA-TGACCAGCTCACCGAG-----GCCAGACTCGCCATTGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCTAACCAACCTTATA-TATAC-------TA----GTA---CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAACATTAa
gi|4 : AGTATA-----TATAAG--GT-TGGTTGCAGCACACTTT-TCCACC-AC-CTCAG-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCTGGGCTCGTCCGGACTC----------GCTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGTAACCAACATTATA-TATACTAATATATAC-TATTA---CCATCTACTCCCAAGCTCAC-------------
gi|5 : aATA-----TACAATATGC-CGGTTTCAGCACACTTTTCCCACC-ATGCA-AA-AA-TGACCAGCTCACCCAGGCTCGTCCGGGCTCGCCCAGGTTCGTCCAGACTCACCCAAGCTCGCTGATCATTTTAAGGTG-
gi|6 : aA-AA-TGACCAGATCACCGAG-----TTGTGACTCGCCCAGGCTCGTCAAGGCTC----------GCTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGCAACAAACCTTATA-TATAC-------TAC-T-a
gi|7 : tgttTAGTATAGAACTTACAGG--GT-T-----TGGCACAGTTT-CCCACA-AC-CTCAG-AG-TGACCATCTCACCGAG-----TCCAGACTCGCTCAGGCTATTCCAGACTC----------GCTGGTCATTCct
gi|8 : aagTAGTATA-----GATTAT--GTGTGGTT-TGGCGCACTTT-TCCAAAGAC-GT-AA-A--TGACCAGCTCACCGAG-----TCCAGACACGCCCAAGCTCGTCCAGACTA----------GCTGGTCATTa
gi|9 : gTAGTATA-----TATAAG--GC-TGGTTTCAGGACTCTTT-TCTATC-AC-TC-AAGAA-TGACCAACTCA-CG---------CAGG-TCGCTATCGCTC--CCAGGCTC----------GTTAGTCATTTTtaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT
Alignments
lowQualScore : 11111 1 1111111111 33333333333333 111 5555555555555 11111
lowQualScore : 99999 0 44 3 2 0 2 2 2 99 2 5 66666 0 5555555555 2 0 6 1 0 8 55555555555555 777 1 5555555555555 11111 1 1 1
lowQualScore : ..... . .. . . . . . . .. . . ..... . .......... . . . . . . .............. ... . ............. ..... . . .
lowQualScore : 11111 5 66 3 5 8 9 9 9 66 7 3 77777 5 9999999999 2 7 7 0 8 0 66666666666666 555 0 0000000000000 33333 0 0 0
consensus : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
Reference ( family-450 ) : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
gi|1 : TATAC----TA-AAA--AT-TTATTATAGCACACTTTCCC-ACC-GC-CT--TA-AA-TGACCAGCTCACCGAT-----TCTAGACTCGCCAAGGCATGTCCAGGCTC----------TCTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGTAATAAACCTT-TACTGTAC-------T---T-CTA---CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|10 : G--GG-TGGTT-TGGCGCTCTTTTCC-ACAAGC-GT--AA-A--TGACCAGCTCACCGAG-----TCCAGACTCGCCAAGGCTCGTCCAGTTTC----------ACTAGTCA
gi|11 : agtagtttagattgtTAGTATAGAT--TATAGG-----TGGTT-TGGCACACTTTTCA-AC--GC-TT--AA-AA-TGACCAGCTCACC----------CAGACTCGCACAGGCTCGTCCAGACTC----------GCTGGTCAT
gi|12 : aTAGTATA-----GGAAAG--GC-AGGTTACGGCACACTTTTCC-ATC-GC-TC--AA-AA-TGACCAGCTCAC----------CCAGACTCGC
gi|13 : ACACATTTCT-ATC-AC-TG--AA-AAATGACCAGCTCGCCGAG-----TCCGGATTCGtggtcattcacgccc
gi|16 : tggtatacaaactaccactttcaggTAGTATA-----GTTATG--GT-TTATTATAGCACCCTTTTCA-ATC-GC-CT--AA-AA-TGACCATCTCACCGAG-----TC
gi|17 : agCTTTTCC-ACC-AC-CT--AA-AAATGACCAGCTCAC----------CCAAGCTCG
gi|2 : cacccTAGTATA-----TATAAG--GT-TCGTTACAGTATA--TTTCC-AAC-AA-CTTCAG-AA-TGACCAGCTCACCGAG-----TCCTGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGTAGCGAACCTTATA-CATAC-------TACAT-GTAAACCCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAACC-----TATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCAT
gi|3 : AGTTTA-----TATAAG--GT-TCGTAACAGCACACTCTCCC-ACC-AC-CT--GA-AA-TGACCAGCTCACCGAG-----GCCAGACTCGCCATTGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCTAACCAACCTTATA-TATAC-------TA----GTA---CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAACATTAa
gi|4 : AGTATA-----TATAAG--GT-TGGTTGCAGCACACTTTTCC-ACC-AC-CTC-AG-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCTGGGCTCGTCCGGACTC----------GCTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGTAACCAACATTATA-TATACTAATATATAC-TATTA---CCATCTACTCCCAAGCTCAC-------------
gi|5 : aATA-----TACAATATGC-CGGTTTCAGCACACTTTTCCCACC-ATGCA--AA-AA-TGACCAGCTCACCCAGGCTCGTCCGGGCTCGCCCAGGTTCGTCCAGACTCACCCAAGCTCGCTGATCATTTTAAGGTG-
gi|6 : aA-AA-TGACCAGATCACCGAG-----TTGTGACTCGCCCAGGCTCGTCAAGGCTC----------GCTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGCAACAAACCTTATA-TATAC-------TAC-T-a
gi|7 : tgttTAGTATAGAACTTACAGG--GT-T-----TGGCACAGTTTCCC-ACA-AC-CTC-AG-AG-TGACCATCTCACCGAG-----TCCAGACTCGCTCAGGCTATTCCAGACTC----------GCTGGTCATTCct
gi|8 : aagTAGTATA-----GATTAT--GTGTGGTT-TGGCGCACTTTTCC-AAA-GA-CG--TA-AA-TGACCAGCTCACCGAG-----TCCAGACACGCCCAAGCTCGTCCAGACTA----------GCTGGTCATTa
gi|9 : gTAGTATA-----TATAAG--GC-TGGTTTCAGGACTCTTTTCT-ATC-AC-TC--AAGAA-TGACCAACTCA-CG---------CAGG-TCGCTATCGCTC--CCAGGCTC----------GTTAGTCATTTTtaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT
Alignments
lowQualScore : 11111 1 1111111111 33333333333333 111 5555555555555 11111
lowQualScore : 99999 0 44 3 2 0 2 2 2 99 2 5 66666 0 5555555555 2 0 6 1 0 8 55555555555555 777 1 5555555555555 11111 1 1 1
lowQualScore : ..... . .. . . . . . . .. . . ..... . .......... . . . . . . .............. ... . ............. ..... . . .
lowQualScore : 11111 5 66 3 5 8 9 9 9 66 7 3 77777 5 9999999999 2 7 7 0 8 0 66666666666666 555 0 0000000000000 33333 0 0 0
consensus : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
Reference ( family-450 ) : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
gi|1 : TATAC----TA-AAA--AT-TTATTATAGCACACTTTCCC-ACC-GC-CT--TA-AA-TGACCAGCTCACCGAT-----TCTAGACTCGCCAAGGCATGTCCAGGCTC----------TCTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGTAATAAACCTT-TACTGTAC-------T---T-CTA---CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|10 : G--GG-TGGTT-TGGCGCTCTTTTCC-ACAAGC-GT--AA-A--TGACCAGCTCACCGAG-----TCCAGACTCGCCAAGGCTCGTCCAGTTTC----------ACTAGTCA
gi|11 : agtagtttagattgtTAGTATAGAT--TATAGG-----TGGTT-TGGCACACTTTTCA-AC--GC-TT--AA-AA-TGACCAGCTCACC----------CAGACTCGCACAGGCTCGTCCAGACTC----------GCTGGTCAT
gi|12 : aTAGTATA-----GGAAAG--GC-AGGTTACGGCACACTTTTCC-ATC-GC-TC--AA-AA-TGACCAGCTCAC----------CCAGACTCGC
gi|13 : ACACATTTCT-ATC-AC-TG--AA-AAATGACCAGCTCGCCGAG-----TCCGGATTCGtggtcattcacgccc
gi|16 : tggtatacaaactaccactttcaggTAGTATA-----GTTATG--GT-TTATTATAGCACCCTTTTCA-ATC-GC-CT--AA-AA-TGACCATCTCACCGAG-----TC
gi|17 : agCTTTTCC-ACC-AC-CT--AA-AAATGACCAGCTCAC----------CCAAGCTCG
gi|2 : cacccTAGTATA-----TATAAG--GT-TCGTTACAGTATA--TTTCC-AAC-AA-CTTCAG-AA-TGACCAGCTCACCGAG-----TCCTGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGTAGCGAACCTTATA-CATAC-------TACAT-GTAAACCCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAACC-----TATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCAT
gi|3 : AGTTTA-----TATAAG--GT-TCGTAACAGCACACTCTCCC-ACC-AC-CT--GA-AA-TGACCAGCTCACCGAG-----GCCAGACTCGCCATTGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCTAACCAACCTTATA-TATAC-------TA----GTA---CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAACATTAa
gi|4 : AGTATA-----TATAAG--GT-TGGTTGCAGCACACTTTTCC-ACC-AC-CTC-AG-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCTGGGCTCGTCCGGACTC----------GCTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGTAACCAACATTATA-TATACTAATATATAC-TATTA---CCATCTACTCCCAAGCTCAC-------------
gi|5 : aATA-----TACAATATGC-CGGTTTCAGCACACTTTTCCCACC-ATGCA--AA-AA-TGACCAGCTCACCCAGGCTCGTCCGGGCTCGCCCAGGTTCGTCCAGACTCACCCAAGCTCGCTGATCATTTTAAGGTG-
gi|6 : aA-AA-TGACCAGATCACCGAG-----TTGTGACTCGCCCAGGCTCGTCAAGGCTC----------GCTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGCAACAAACCTTATA-TATAC-------TAC-T-a
gi|7 : tgttTAGTATAGAACTTACAGG--GT-T-----TGGCACAGTTTCCC-ACA-AC-CTC-AG-AG-TGACCATCTCACCGAG-----TCCAGACTCGCTCAGGCTATTCCAGACTC----------GCTGGTCATTCct
gi|8 : aagTAGTATA-----GATTAT--GTGTGGTT-TGGCGCACTTTTCC-AAA-GA-CG--TA-AA-TGACCAGCTCACCGAG-----TCCAGACACGCCCAAGCTCGTCCAGACTA----------GCTGGTCATTa
gi|9 : gTAGTATA-----TATAAG--GC-TGGTTTCAGGACTCTTTTCT-ATC-AC-TC--AAGAA-TGACCAACTCA-CG---------CAGG-TCGCTATCGCTC--CCAGGCTC----------GTTAGTCATTTTtaaaa
blockSeqs : GAACT AT G G A C A G TC G A GCTCG ACCCAAGCTC C . G . TAATATATACTAT AAC A . . A A C
blockSeqs : GAT . . G A . . . C . A . . C . C . TACATG . A .
blockSeqs : . . . G A . . . C . . . . T . C . TAG . C .
blockSeqs : . . . T A . . . . . . . . T . A .
blockSeqs : . . . C G . . . . . . . . C .
blockSeqs : . . . C T . . . . . . . . T
blockSeqs : . . . G T . . . . . . . . .
blockSeqs : . . . G . . . . . . . . .
blockSeqs : . . . G . . . . . . . . .
blockSeqs : . . . G . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqCons : *****
originalCons : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
finalCons : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT
Alignments
lowQualScore : 11111 1 1111111111 33333333333333 111 5555555555555 11111
lowQualScore : 99999 0 44 3 2 0 2 2 2 99 2 5 66666 0 5555555555 2 0 6 1 0 8 55555555555555 777 1 5555555555555 11111 1 1 1
lowQualScore : ..... . .. . . . . . . .. . . ..... . .......... . . . . . . .............. ... . ............. ..... . . .
lowQualScore : 11111 5 66 3 5 8 9 9 9 66 7 3 77777 5 9999999999 2 7 7 0 8 0 66666666666666 555 0 0000000000000 33333 0 0 0
consensus : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
Reference ( family-450 ) : TAGTATA-----TATAAG--GT-TGGTTACGGCACACTTTTCC-ACC-GC-CT--AA-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGCG-GTGGAAAAGTTTGTTGTAACNAACCTTATA-TATAC-------TAC-T-NTA---CCATCTACCCCNAGGCTCGC-------------CCGTGGAAAAATTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAANGTCNCCCCGGTTTCAACTCTTACTTAGAGTAATGACNAT
gi|1 : TATAC----TA-AAA--AT-TTATTATAGCACACTTTCCC-ACC-GC-CT--TA-AA-TGACCAGCTCACCGAT-----TCTAGACTCGCCAAGGCATGTCCAGGCTC----------TCTGGTCATTC--ACGCCCGTGGAAAAGTTTGCTGTAATAAACCTT-TACTGTAC-------T---T-CTA---CTATCTACCCCCAGGCCCGCTGGTCATTCACGCCCGTGGAACAGTTTGCTGTAATAAACCTTAAATATACTACTATTAATCTATAAAATGTTTCCCCGGTTTCAACTCTTACTTAGAGTAATGACAAT
gi|10 : G--GG-TGGTT-TGGCGCTCTTTTCC-ACAAGC-GT--AA-A--TGACCAGCTCACCGAG-----TCCAGACTCGCCAAGGCTCGTCCAGTTTC----------ACTAGTCA
gi|11 : agtagtttagattgtTAGTATAGAT--TATAGG-----TGGTT-TGGCACACTTTTCA-AC--GC-TT--AA-AA-TGACCAGCTCACC----------CAGACTCGCACAGGCTCGTCCAGACTC----------GCTGGTCAT
gi|12 : aTAGTATA-----GGAAAG--GC-AGGTTACGGCACACTTTTCC-ATC-GC-TC--AA-AA-TGACCAGCTCAC----------CCAGACTCGC
gi|13 : ACACATTTCT-ATC-AC-TG--AA-AAATGACCAGCTCGCCGAG-----TCCGGATTCGtggtcattcacgccc
gi|16 : tggtatacaaactaccactttcaggTAGTATA-----GTTATG--GT-TTATTATAGCACCCTTTTCA-ATC-GC-CT--AA-AA-TGACCATCTCACCGAG-----TC
gi|17 : agCTTTTCC-ACC-AC-CT--AA-AAATGACCAGCTCAC----------CCAAGCTCG
gi|2 : cacccTAGTATA-----TATAAG--GT-TCGTTACAGTATA--TTTCC-AAC-AA-CTTCAG-AA-TGACCAGCTCACCGAG-----TCCTGACTCGCCCAGGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTTTGTAGTAGCGAACCTTATA-CATAC-------TACAT-GTAAACCCATCTACCCCAAGGCTCGC-------------CCGTGGAAATATTTGCTGTAATAAACC-----TATACTACTATTAATCTATAAAAAGTCACCTCGATTTCAACTCTTACTTAGAATAATGACCAT
gi|3 : AGTTTA-----TATAAG--GT-TCGTAACAGCACACTCTCCC-ACC-AC-CT--GA-AA-TGACCAGCTCACCGAG-----GCCAGACTCGCCATTGCTCGTCCAGACTC----------GCTGGTCATTCTGAGGTG-GTGGAAAAGTATGTTCTAACCAACCTTATA-TATAC-------TA----GTA---CCATCTACCCCAAGGCTCGT-------------CCGTGGAAAAATTTGTTGTAACAAACATTAa
gi|4 : AGTATA-----TATAAG--GT-TGGTTGCAGCACACTTTTCC-ACC-AC-CTC-AG-AA-TGACCAGCTCACCGAG-----TCCAGACTCGCCTGGGCTCGTCCGGACTC----------GCTTGTCATT-TACGCCC-GTGGAAAAGTTTGTTGTAACCAACATTATA-TATACTAATATATAC-TATTA---CCATCTACTCCCAAGCTCAC-------------
gi|5 : aATA-----TACAATATGC-CGGTTTCAGCACACTTTTCCCACC-ATGCA--AA-AA-TGACCAGCTCACCCAGGCTCGTCCGGGCTCGCCCAGGTTCGTCCAGACTCACCCAAGCTCGCTGATCATTTTAAGGTG-
gi|6 : aA-AA-TGACCAGATCACCGAG-----TTGTGACTCGCCCAGGCTCGTCAAGGCTC----------GCTGGTCATTTTGAGGTG-GTGTGGAACTTTGTTGCAACAAACCTTATA-TATAC-------TAC-T-a
gi|7 : tgttTAGTATAGAACTTACAGG--GT-T-----TGGCACAGTTTCCC-ACA-AC-CTC-AG-AG-TGACCATCTCACCGAG-----TCCAGACTCGCTCAGGCTATTCCAGACTC----------GCTGGTCATTCct
gi|8 : aagTAGTATA-----GATTAT--GTGTGGTT-TGGCGCACTTTTCC-AAA-GA-CG--TA-AA-TGACCAGCTCACCGAG-----TCCAGACACGCCCAAGCTCGTCCAGACTA----------GCTGGTCATTa
gi|9 : gTAGTATA-----TATAAG--GC-TGGTTTCAGGACTCTTTTCT-ATC-AC-TC--AAGAA-TGACCAACTCA-CG---------CAGG-TCGCTATCGCTC--CCAGGCTC----------GTTAGTCATTTTtaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGC
Unaligned ( gi|15 ): GCACCATAGCAGTAGTATGCATTATGCCACTCTCAAGACTCTTTTCTATCACCAGAAATAATCAGCT