lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 1 111 1111111111 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 22222222 444444444444 11 11 11111 7777777777777777 1111111 1111 888888888888888888888 11 22222222 1111
lowQualScore : 66666 0 999 9999999999 33 777 2 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 555 5 0 0 99999999 111111111111 33 7 22 0 66666 8 3 8 77 1 7777777777777777 55 8 2222222 1 3 4444 111111111111111111111 77 444 4 11 11111111 0 4 666 0 7777
lowQualScore : ..... . ... .......... .. ... . ................................................................................................ . ... . . . ........ ............ .. . .. . ..... . . . .. . ................ .. . ....... . . .... ..................... .. ... . .. ........ . . ... . ....
lowQualScore : 77777 0 888 2222222222 88 000 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 000 7 4 7 88888888 000000000000 88 7 00 8 44444 2 2 0 88 0 0000000000000000 33 0 5555555 2 0 2222 666666666666666666666 99 666 2 99 77777777 4 3 777 6 1111
consensus : ATTTTAGACC-TAA-GGACACCATTT-GNACAAATCTGACGA--AACTGT--AGTTNGTNATC-ATTNCTACAT--TAA-NATTTTGAAC----AATTTGTT-GACNGTTCA---NG---AGAAGATTT-TTTAA-G-------TTT------T-TGATTATTTTNA-GT-AACGGCGGCCATCTTGAATTTTAGA-C----GAAAAA------------AAC--ANATCTTGTGTACAGTTTCACATACATGANAAA-CATCCATGTGAAGTTTNGAGTNTANT------TGGCCTNGTGGTTTCAGAG-AAAGTGCTGNTAACGGAC----GACA-ATGATNGA------ACAAG-CA--ACGCGTCATCGCAT--AAGCNCT---TCTGGCCTTTGGCCAGTAGAGC---TAAAAAT
Reference ( gi|1 ) : ATTTTAAACCCTAA-GGACACCATTT-GAACAAATCTAACAG--AACTAT--AGTTGGTCACC-ATTACTACAT--TAA-CATTTTGAA-----AATCTGTTAGGCTGTTCA---AGAGAAGAAGATTT-TTTAA-A-------TTT------T-TGACTATTTTCA-GT-AATGGCGGCCATCTTGAATTTCAGA-T----GGAAAA------------AAT--ATATCTTCTGTATAGTCTCCTATGCATCAGAAA-CACCCATGTGAAGTTTC-AGTTTAAT------TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACAGAC----GACACATGATGGAA----GACAGC-CA--ATGCGTCATCGCAT--AAGCACT---TCTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|9 : ATTTCAGACG--AA-GGACATCATTT-GTATAAACCTGATGGCTAATTATCTAGT-GATCACTTATTTCTA------AA-CA----AGA-----AAT-----------TTCA---A---------ATTTCTTTAT-G-------TTC------TCTGGTTATTTTAA-GT-AATGAAGGCCATCTTGAATCTTA
gi|4 : cTTTTAAATC-TAG-GGACACCATTT-AAACAAATGTAACAA--AACTAT--AGTTGGTCATC-ATTATTACAT--AAA-GATTTTGAA-----AATATGTTGGACCGTTCA---TG---AGAAGATTT-TTTAA-G-------TTT------T-GGACTATTTTTA-GT-AACGGTGGCCATCTTGAATTTCAGA-T----CGAAAA------------AAa
gi|2 : gggtcatTTTTA---CCTAAAGGACACCTTTTTG--TAAA-CTGACCA--AACTGT--ATATTGTGATC-ATTTCCA-AT--TAAATATTTTCAGC----AGTTTGCT----TGTTAA---TGATAAGAA---TT-TTTAC-CCCTTTTTTTT------T-TAAATATTTTTAAGC-AATGGCAGCCATCTTGAACTTTAGA-TCCAAAAAAAA------------AATAAAAATATTGTGTACAGTTTCACATACATGACAAA-CAATCCTTTGAAGTTTG-AGGTGGGTCCTCTGTGGCCGAGTGGTCACACAG-AAAaaaaatcaaatatgtacaagtctgacatacca
gi|6 : gaggtcattc-GGACACCATTT-GCACAACT-TGTCAT--GACTGT--GGCTTGTAA-----TAGT---T--TCA-GATT--GCA-----AATTTGTT---CAGT----------------ATTT-CTTGA-G-------GTG------T--AATTATTTTAT-AT-AGTGGTGGCCATCTTGAATGTTGGG-G----GTAAAA------------CAC--ATAACTTCTGTATAAACTGCTCTCTATTATAAA-CAC---TGTGAA
gi|8 : tcatttttctatatttcatACATAGCAA-TATTTTGAACAATGAATCT--TAGAAAGTTCATTTAG----TATGATTT-T--AAGA-------TTTGGTCTAT-T--CTATTTTTA-GT-AACAGCAGCCATCTTGAATCTCAAA-C----AAATAA------------AAC--A
gi|7 : tcAA-G-------TTT------T-TTATCATTTTCA-GT-AAGCGTGGGCCTCTTGAATggtatgcaaggaaacttaatgccatacacagt
gi|5 : TATTTT---GTTAATG-CAGTGATCTTGA-TTTTGGACT----GAAAAAGATTTAAAACAAAAT--AGATCT---GT-TAATTCTCAA---ACCAGAAAGCATCAATATTAAGTTT-------ACT------TGGCATTGTGGTTTCAGAGTAGA-----GATAACGGAC-----AC---TGACAGACT---GACAAG-CATCATGTGTCATCATAT--AA--ACTAAAACTGAC--TTG---AGTAGAGA---CAAAatttttttaaaataaggtgcaacttacagtaatgtcaagtttagagtacaactagtctagtggttttagataaagtgtttgtaatgtacgacaacaggcaataaaccatcacataaaggcccgtagagcaaaaa
gi|3 : ATCTTGTGAACAGCCTCACATACATGAGAAG-CATCCAAGTGAAGTTTTGAGTATA----------GCC-AGTGACTTTAg
gi|15 : GTACAGTTTCACATACATGAAAAA-CATCCATTTGAAGTTttgctagtctatatgtctctaatacagccgaccttgtggtttcaaagaaactacagtttacggacaattgacatataattaacaacgtgtcatccatgaagtggttctgacctttggtaagatgagctaaagaaatg
gi|7 : ATGTCAAGTTTAGAGTACAAC------TAGTCTAGTGGTTTTAGAT-AAAGTGTTTGTAATGTAC----GACA---------------ACAGG-CA--ATAAACCATCACAT--AAA-----------------GGCCCGTAGAGC----AAAAAgga
gi|11 : aagttttttatcattttcagtaagcgtgggcctcttgaatatttttttaaaataaggtgcaacttacagtaTTTACA------TAGCTTGGTGGTTTCAGGT-AGAGTGCTGCTGACGGAA----GACA-ATGA----------ACAACACA--ACGCACCGTAGTAT--AA
gi|3 : GACCTTGTGGTTTCAAAG-AAACTACAGTTTACGGACAATTGACATATAATTAA------------CA--ACGTGTCATC-CATG-AAGTGGT---TCTGACCTTTGGTAAGATGAGC---TAAAGA
gi|10 : atcttgtgaacagcctcacatacatgagaagcatccaagtgaagttttgagtatagccagtgactttattgctagtctatatgtctctaatacagccCAGCT----GACAAAT-ATGGGATGCTGACAGA-CA--GAACACTATCATAT--AAGCTCA---CCTGGCCTTTGAACAGAAGAGC----AAAaatg
gi|13 : ----GACAGATTATGGA-------CA----A--AT-TATCATGACAT--GAGCCCT---TCTGACCTTTTGACATTAGAGC---TAAAAATtaac
gi|12 : ATTGAA----AACGAA-CA--AGGCGTCATTGCATTTGAGCTTG---TCTGGCCTTTAGCCAGCACAGCTTTTAAAAA
gi|14 : GTCATCGAAC--AAGCACT---TCTGGCATTTGCCAAATTGAGC---TAAACAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGCAGATGGTGGACAAATTACCATCACATGAGCCCTGCTG
Alignments
lowQualScore : 1 11 1111 222222222222 1 4444444444444444444444444444 1111111 111111 11111 1111 33333333333333333 11111 222222222222222 6666666666666666666 11 11111111 1111
lowQualScore : 0 33 8 0 1 88 7777 666 1 1 999999999999 3 1 5 7777777777777777777777777777 6 8888888 888888 66 5 11 5 11 22222 8888 0 55555555555555555 4 1 0 00000 55 0 5 0 3 9 6 1 888888888888888 22 6 5 1 1 1111111111111111111 88 99 2 2 00 88888888 2 22 3333
lowQualScore : . .. . . . .. .... ... . . ............ . . . ............................ . ....... ...... .. . .. . .. ..... .... . ................. . . . ..... .. . . . . . . . ............... .. . . . . ................... .. .. . . .. ........ . .. ....
lowQualScore : 5 22 0 8 0 88 8888 000 0 0 333333333333 3 7 0 7777777777777777777777777777 7 6666666 777777 99 0 44 0 66 55555 7777 3 99999999999999999 0 0 4 44444 22 7 7 1 2 8 7 0 666666666666666 44 7 0 0 0 3333333333333333333 88 22 2 7 66 88888888 5 88 9999
consensus : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--T-AANATTTTGAACAAT---TTGTT-GACNGTTCATG-AGAA---GATTT-TTTAA-------GTTTT-TG---ATT--A-TTTTNAGTAA-CGGCGGCCATCTTGAA-----TTTTAGA--C-GAAAAA------------A----ANANATC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTTCGAGT--NTANT---TGGCCTAGTGGTTTCAGAG-AAAGTGCTGNTAACGGACA-T-GACA-ATGATTGA--ACAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
Reference ( family-428 ) : ATTTTAGACC-TAA-GGACACCATTTGNACAAATCTGACGA--AACTGTAGTTNGTNATCATTNCTACAT--T-AANATTTTGAACAAT---TTGTT-GACNGTTCANG-AGAA---GATTT-TTTAA-------GTTTT-TG---ATT--A-TTTTNAGTAA-CGGCGGCCATCTTGAA-----TTTTAGA--C-GAAAAA------------A----ACANATC--TTGTGTAC-AGTTTCACA-TACATGANAAAC-ATCCATGTGAAGTTTNGAGT--NTANT---TGGCCTNGTGGTTTCAGAG-AAAGTGCTGNTAACGGAC----GACA-ATGATNGA--ACAA-GCA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|1 : ATTTTAAACCCTAA-GGACACCATTTGAACAAATCTAACAG--AACTATAGTTGGTCACCATTACTACAT--T-AACATTTTGAA-AAT---CTGTTAGGCTGTTCAAG-AGAAGAAGATTT-TTTAA-------ATTTT-TG---ACT--A-TTTTCAGTAA-TGGCGGCCATCTTGAA-----TTTCAGA--T-GGAAAA------------A----ATATATC--TTCTGTAT-AGTCTCCTA-TGCATCAGAAAC-ACCCATGTGAAGTTTC-AGT--TTAAT---TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACAGAC----GACACATGATGGAAGACAG-CCA--ATGCGTCATCGCAT--AAGCACTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|10 : ATCATAT--AAGCTCAC----CTGGCCTTTGAACAGAAGAGC----AAA
gi|11 : cagctgacaaatatgggatgctgacagacagaacactT--TTACA---TAGCTTGGTGGTTTCAGGT-AGAGTGCTGCTGACGGAA----GACA-AT----GA--ACAACACA--ACGCACCGTAGTAT--AAtaac
gi|12 : A--ACGA-ACA--AGGCGTCATTGCATTTGAGCTTGT----CTGGCCTTTAGCCAGCACAGCTTTTAAAAA
gi|13 : attgaaTCATGACAT--GAGCCCTT----CTGACCTTTTGACATTAGAGC---TAAAAAT
gi|14 : gacagattatggacaaattaGTCATCGAAC--AAGCACTT----CTGGCATTTGCCAAATTGAGC---TAAACAT
gi|15 : GTAC-AGTTTCACA-TACATGAAAAAC-ATCCATTTGAAGTTta
gi|2 : TTTTA--CC-TAAAGGACACC-TTTTTGTAAA-CTGACCA--AACTGTATATTGTGATCATTTCCA-AT--TAAATATTTTCAGCAGT---TTGCT----TGTTAATG-ATAA---GAATT-TTTACCCCTTTTTTTTT-TA---AAT--ATTTTTAAGCAA-TGGCAGCCATCTTGAA-----CTTTAGATCC-AAAAAA------------AAAATAAAAATA--TTGTGTAC-AGTTTCACA-TACATGACAAACAATCC-TTTGAAGTTTGAGGTGGGTCCTCTGTGGCCGAGTGGTCACACAG-AAAgga
gi|3 : gaggtcattcATC--TTGTGAAC-AGCCTCACA-TACATGAGAAGC-ATCCAAGTGAAGTTTTGAGT--ATA-------GCC-AGTGACTTTA
gi|3 : GTCTCTAAT--ACAGC---CGACCTTGTGGTTTCAAAG-AAACTACAGTTTACGGACAATTGACATATAATT-------A-ACA--ACGTGTCATC-CATG-AAGTGGTT----CTGACCTTTGGTAAGATGAGC---TAAAGAttgctagtctatatgtctctaatacagccgaccttgtggtttcaaagaaactacagtttacggacaattgacatataattaacaacgtgtcatccatgaagtggttctgacctttggtaagatgagctaaagaaatg
gi|4 : atcttgtgaacagcctcacatacatgagaagcatccaagtgaagttttgagtatagccagtgactttattgctagtctatatTTTTAAATC-TAG-GGACACCATTTAAACAAATGTAACAA--AACTATAGTTGGTCATCATTATTACAT--A-AAGATTTTGAA-AAT---ATGTTGGACCGTTCATG-AGAA---GATTT-TTTAA-------GTTTT-GG---ACT--A-TTTTTAGTAA-CGGTGGCCATCTTGAA-----TTTCAGAT-C-GAAAAA------------A----AAAAATCAAATATGTACAAGTCTGACA-TACaatg
gi|5 : gggtcatT--A-TTTTG-TTAA-TG-CAGTGATCTTGA------TTTTGGA--CTGAAAAAGATTTAAAACAAA----ATAGATC--T-GT-TA--ATTCTCAAA-C-CA-GA-AAGC-ATCAATATTAAGTTT---------ACT---TGGCATTGTGGTTTCAGAGTAGA-----GATAACGGACACT-GACA---GACTG---ACAA-GCATCATGTGTCATCATAT--AAAC---TAAAACTGAC--TTG---AGTAGAGA---CAAAca
gi|6 : -GGACACCATTTGCACAACT-TGTCAT--GACTGTGGCTTGTAATAGTTTC----------AGATT--GCA-AAT---TTGTT---CAGT--------------ATTT-CTTGA-------GGTGT--A---ATT--A-TTTTATATAG-TGGTGGCCATCTTGAA-----TGTTGGG--G-GTAAAA------------C----ACATAAC--TTCTGTAT-Ag
gi|7 : tcatttttctatatttcatAA-------GTTTT-TT---ATC--A-TTTTCAGTAAGCGTGGGCC-TCTTGAATATTTTTTTA-----------A------------A----ATAAG--------GTGC-AACTT-ACAGTA---------------ATGTCAAGTTTAGAGT--ACAAC---TAGTCTAGTGGTTTTAGAT-AAAGTGTTTGTAATGTAC----GAC---------A--ACAG-GCA--ATAAACCATCACAT--AAA------------------GGCCCGTAGAGC----AAAAAaactgctctctattataaacactgtgaa
gi|8 : ACATAGC-AATATTTTGAACAATGAATCTTA-GAAAGTTCATTTAGTAT--GATTT-T--AA-------GATTT-GGTCTATTCTA-TTTTTAGTAA-CAGCAGCCATCTTGAA-----TCTCAAA--C-AAATAA------------A----ACAGGT
gi|9 : tcATTTCAGACG--AA-GGACATCATTTGTATAAACCTGATGGCTAATTAT--CTAGTGATCACTT----AT--T------TCTAAACAA----------GAAATTTCAA----------ATTTCTTTAT-------GTTCTCTG---GTT--A-TTTTAAGTAA-TGAAGGCCATCTTGAA-----TCTTAatgcaaggaaacttaatgccatacacagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGCAGATGGTGGACAAATTACCATCACATGAGCCCTGCTG
Alignments
lowQualScore : 11 1111 22222222222222 1 44444444444444444444444444444 1111111 111111 11111 1111 222222222222 11111111111 333333333333333 6666666666666666666666666 11 11111111 1111
lowQualScore : 7 33 8 0 1 88 7777 555 1 1 88888888888888 1 5 77777777777777777777777777777 6 8888888 888888 66 666 5 11 22222 8888 0 999999999999 1 1 88888888888 55 0 5 0 3 9 6 1 000000000000000 22 6 5 1 1 0 2222222222222222222222222 5 66 8 0 2 00 88888888 2 22 3333
lowQualScore : . .. . . . .. .... ... . . .............. . . ............................. . ....... ...... .. ... . .. ..... .... . ............ . . ........... .. . . . . . . . ............... .. . . . . . ......................... . .. . . . .. ........ . .. ....
lowQualScore : 0 22 0 8 0 88 0000 222 0 0 00000000000000 7 0 77777777777777777777777777777 7 6666666 777777 99 444 0 66 55555 7777 3 333333333333 0 0 66666666666 22 1 7 1 2 3 7 0 777777777777777 00 7 0 0 0 3 3333333333333333333333333 0 99 5 2 7 66 88888888 5 88 9999
consensus : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTNCANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
Reference ( family-428 ) : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTNTANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGNTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|1 : ATTTTAAACCCTAA-GGACACCATTTGAACAAATCTAACAG--AACTATAGTTGGTCACCATTACTACAT--TAAC-ATTTTGAA-AAT---CTGTTAG-GCTGTTCAAG-AGAAGAAGATTT-TTTAAA-------TTTT-TG---ACT--ATTTTCA-GTAA-TGGCGGCCATCTTGAAT-----TTCAGA--T-GGAAAA------------AATATA----TC--TTCTGTAT-AGTCTCCTA-TGCATCAGAAAC-ACCCATGTGAAGTTT----C-AGTTTAAT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACAGAC----GACACATGATG--GAAGA--CAG-CCA--ATGCGTCATCGCAT--AAGCACTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|10 : GCTGACAAATA--TGG-G-ATG-CT--GA-----CAG-ACA--GAACACTATCATAT--AAGCTCAC----CTGGCCTTTGAACAGAAGAGC----AAA
gi|11 : caTTTACA-TAGCTTGGTGGTTTCAGGT-AGAGTGCTGCTGACGGA-A---GACA-A----T--GA--A--CAACACA--ACGCACCGTAGTAT--AAtaac
gi|12 : ATT--GA--AAACGA-ACA--AGGCGTCATTGCATTTGAGCTTGT----CTGGCCTTTAGCCAGCACAGCTTTTAAAAA
gi|13 : GACA---GATTATGG--A--CAA-ATT--A----TCATGACAT--GAGCCCTT----CTGACCTTTTGACATTAGAGC---TAAAAAT
gi|14 : GTCATCGAAC--AAGCACTT----CTGGCATTTGCCAAATTGAGC---TAAACAT
gi|15 : GTAC-AGTTTCACA-TACATGAAAAAC-ATCCATTTGAAGTTta
gi|2 : TTTTA--CC-TAAAGGACACC-TTTTTGTAAA-CTGACCA--AACTGTATATTGTGATCATTTCCA-AT--TAAATATTTTCAGCAGT---TTGCT-----TGTTAATG-ATAA---GAATT-TTTACCCCTTTTTTTTT-TA---AAT--ATTTTTAAGCAA-TGGCAGCCATCTTGAAC-----TTTAGATCC-AAAAAA------------AAAATAAAAATA--TTGTGTAC-AGTTTCACA-TACATGACAAACAATCC-TTTGAAGTTTGAGGTGGGTCCTCTGTGGCCGAGTGGTCACACAG-AAAgga
gi|3 : gaggtcattcA----TC--TTGTGAAC-AGCCTCACA-TACATGAGAAGC-ATCCAAGTGAAGTTT----TGAGTATA-----GCC-AGTGACTTTA
gi|3 : GTCT----CTAATACAGC-CGACCTTGTGGTTTCAAAG-AAACTACAGTTTACGGACAATTGACATATAATT-----------A-ACA--ACGTGTCATC-CATG-AAGTGGTT----CTGACCTTTGGTAAGATGAGC---TAAAGAttgctagtctatatgtctctaatacagccgaccttgtggtttcaaagaaactacagtttacggacaattgacatataattaacaacgtgtcatccatgaagtggttctgacctttggtaagatgagctaaagaaatg
gi|4 : atcttgtgaacagcctcacatacatgagaagcatccaagtgaagttttgagtatagccagtgactttattgctagtctatatTTTTAAATC-TAG-GGACACCATTTAAACAAATGTAACAA--AACTATAGTTGGTCATCATTATTACAT--AAAG-ATTTTGAA-AAT---ATGTT-GGACCGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-GG---ACT--ATTTTTA-GTAA-CGGTGGCCATCTTGAAT-----TTCAGAT-C-GAAAAA------------AAAAAA----TCAAATATGTACAAGTCTGACA-TACaatg
gi|5 : gggtcatT--ATTTTG--TTAA-TG-CAGTGATCTTGA-T-----TTTGGA--CTGAAAAAGATTTAAAACAAAATAGA----TC--T-GT-TA--ATTCTCAAA-C-CA-GA-AAGC-ATCAATATTAAGTTT-----------ACT-TGGCATTGTGGTTTCAGAGTAGA-----GATAACGGACAC-TGACA---GACT--G---A--CAA-GCATCATGTGTCATCATAT--AAAC---TAAAACTGAC--TTG---AGTAGAGA---CAAAca
gi|6 : -GGACACCATTTGCACAACT-TGTCAT--GACTGTGGCTTGTAATAGTTTC---------AG-ATT--GCA-AAT---TTGTT----CAGT--------------ATTT-CTTGAG-------GTGT--A---ATT--ATTTTAT-ATAG-TGGTGGCCATCTTGAAT-----GTTGGG--G-GTAAAA------------CACATA----AC--TTCTGTAT-Ag
gi|7 : tcatttttctatatttcatAAG-------TTTT-TT---ATC--ATTTTCA-GTAAGCGTGGGCC-TCTTGAATATTTTTTTA-----------A------------AATAAG------------GTGC-AA-CTTACAGTA---------------ATGTCAAGTTT----AGAGTACAAC-TAGTCTAGTGGTTTTAGAT-AAAGTGTTTGTAATGTAC----GAC-----------A--A--CAG-GCA--ATAAACCATCACAT--AAA------------------GGCCCGTAGAGC----AAAAAaactgctctctattataaacactgtgaa
gi|8 : ACATAGCAAT-ATTTTGAACAATGAATCTTA-G-AAAGTTCATTTAGTAT--GATTT-T--AAG-------ATTT-GGTCTATTCTATTTTTA-GTAA-CAGCAGCCATCTTGAAT-----CTCAAA--C-AAATAA------------AACAGG----T
gi|9 : tcATTTCAGACG--AA-GGACATCATTTGTATAAACCTGATGGCTAATTAT--CTAGTGATCACTT----AT--T------TCTAAACAA----------G-AAATTTCA----------AATTTCTTTATG-------TTCTCTG---GTT--ATTTTAA-GTAA-TGAAGGCCATCTTGAAT-----CTTAatgcaaggaaacttaatgccatacacagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGCAGATGGTGGACAAATTACCATCACATGAGCCCTGCTG
Alignments
lowQualScore : 11 1111 22222222222222 1 44444444444444444444444444444 1111111 111111 11111 1111 222222222222 11111111111 333333333333333 6666666666666666666666666 11 11111111 1111
lowQualScore : 7 33 8 0 1 88 7777 555 1 1 88888888888888 1 5 77777777777777777777777777777 6 8888888 888888 66 666 5 11 22222 8888 0 999999999999 1 1 88888888888 55 0 5 0 3 9 6 1 444444444444444 22 6 5 1 1 0 2222222222222222222222222 5 66 8 0 2 00 88888888 2 22 3333
lowQualScore : . .. . . . .. .... ... . . .............. . . ............................. . ....... ...... .. ... . .. ..... .... . ............ . . ........... .. . . . . . . . ............... .. . . . . . ......................... . .. . . . .. ........ . .. ....
lowQualScore : 0 22 0 8 0 88 0000 222 0 0 00000000000000 7 0 77777777777777777777777777777 7 6666666 777777 99 444 0 66 55555 7777 3 333333333333 0 0 66666666666 22 1 7 1 2 3 7 0 999999999999999 00 7 0 0 0 3 3333333333333333333333333 0 99 5 2 7 66 88888888 5 88 9999
consensus : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTACANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
Reference ( family-428 ) : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTNCANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|1 : ATTTTAAACCCTAA-GGACACCATTTGAACAAATCTAACAG--AACTATAGTTGGTCACCATTACTACAT--TAAC-ATTTTGAA-AAT---CTGTTAG-GCTGTTCAAG-AGAAGAAGATTT-TTTAAA-------TTTT-TG---ACT--ATTTTCA-GTAA-TGGCGGCCATCTTGAAT-----TTCAGA--T-GGAAAA------------AATATA----TC--TTCTGTAT-AGTCTCCTA-TGCATCAGAAAC-ACCCATGTGAAGTTT----C-AGTTTAAT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACAGAC----GACACATGATG--GAAGA--CAG-CCA--ATGCGTCATCGCAT--AAGCACTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|10 : GCTGACAAATA--TGG-G-ATG-CT--GA-----CAG-ACA--GAACACTATCATAT--AAGCTCAC----CTGGCCTTTGAACAGAAGAGC----AAA
gi|11 : ca-TAGCTTGGTGGTTTCAGGT-AGAGTGCTGCTGACGGA-A---GACA-A----T--GA--A--CAACACA--ACGCACCGTAGTAT--AAtaac
gi|12 : tttacaATT--GA--AAACGA-ACA--AGGCGTCATTGCATTTGAGCTTGT----CTGGCCTTTAGCCAGCACAGCTTTTAAAAA
gi|13 : GACA---GATTATGG--A--CAA-ATT--A----TCATGACAT--GAGCCCTT----CTGACCTTTTGACATTAGAGC---TAAAAAT
gi|14 : GTCATCGAAC--AAGCACTT----CTGGCATTTGCCAAATTGAGC---TAAACAT
gi|15 : GTAC-AGTTTCACA-TACATGAAAAAC-ATCCATTTGAAGTTta
gi|2 : TTTTA--CC-TAAAGGACACC-TTTTTGTAAA-CTGACCA--AACTGTATATTGTGATCATTTCCA-AT--TAAATATTTTCAGCAGT---TTGCT-----TGTTAATG-ATAA---GAATT-TTTACCCCTTTTTTTTT-TA---AAT--ATTTTTAAGCAA-TGGCAGCCATCTTGAAC-----TTTAGATCC-AAAAAA------------AAAATAAAAATA--TTGTGTAC-AGTTTCACA-TACATGACAAACAATCC-TTTGAAGTTTGAGGTGGGTCCTCTGTGGCCGAGTGGTCACACAG-AAAgga
gi|3 : gaggtcattcA----TC--TTGTGAAC-AGCCTCACA-TACATGAGAAGC-ATCCAAGTGAAGTTT----TGAGTA-----TAGCC-AGTGACTTTA
gi|3 : GTCT----CTAATACAGC-CGACCTTGTGGTTTCAAAG-AAACTACAGTTTACGGACAATTGACATATAATT-----------A-ACA--ACGTGTCATC-CATG-AAGTGGTT----CTGACCTTTGGTAAGATGAGC---TAAAGAttgctagtctatatgtctctaatacagccgaccttgtggtttcaaagaaactacagtttacggacaattgacatataattaacaacgtgtcatccatgaagtggttctgacctttggtaagatgagctaaagaaatg
gi|4 : atcttgtgaacagcctcacatacatgagaagcatccaagtgaagttttgagtatagccagtgactttattgctagtctatatTTTTAAATC-TAG-GGACACCATTTAAACAAATGTAACAA--AACTATAGTTGGTCATCATTATTACAT--AAAG-ATTTTGAA-AAT---ATGTT-GGACCGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-GG---ACT--ATTTTTA-GTAA-CGGTGGCCATCTTGAAT-----TTCAGAT-C-GAAAAA------------AAAAAA----TCAAATATGTACAAGTCTGACA-TACaatg
gi|5 : gggtcatT--ATTTTG--TTAA-TG-CAGTGATCTTGA-T-----TTTGGA--CTGAAAAAGATTTAAAACAAAATAGA----TC--T-GT-TA--ATTCTCAAA-C-CA-GA-AAGC-ATCAATATTAAGTTT-----------ACT-TGGCATTGTGGTTTCAGAGTAGA-----GATAACGGACAC-TGACA---GACT--G---A--CAA-GCATCATGTGTCATCATAT--AAAC---TAAAACTGAC--TTG---AGTAGAGA---CAAAca
gi|6 : -GGACACCATTTGCACAACT-TGTCAT--GACTGTGGCTTGTAATAGTTTC---------AG-ATT--GCA-AAT---TTGTT----CAGT--------------ATTT-CTTGAG-------GTGT--A---ATT--ATTTTAT-ATAG-TGGTGGCCATCTTGAAT-----GTTGGG--G-GTAAAA------------CACATA----AC--TTCTGTAT-Ag
gi|7 : tcatttttctatatttcatAAG-------TTTT-TT---ATC--ATTTTCA-GTAAGCGTGGGCC-TCTTGAATATTTTTTTA-----------A------------AATAAG------------GTGC-AA-CTTACAGTA---------------ATGTCAAGTTT----AGAGTACAAC-TAGTCTAGTGGTTTTAGAT-AAAGTGTTTGTAATGTAC----GAC-----------A--A--CAG-GCA--ATAAACCATCACAT--AAA------------------GGCCCGTAGAGC----AAAAAaactgctctctattataaacactgtgaa
gi|8 : ACATAGCAAT-ATTTTGAACAATGAATCTTA-G-AAAGTTCATTTAGTAT--GATTT-T--AAG-------ATTT-GGTCTATTCTATTTTTA-GTAA-CAGCAGCCATCTTGAAT-----CTCAAA--C-AAATAA------------AACAGG----T
gi|9 : tcATTTCAGACG--AA-GGACATCATTTGTATAAACCTGATGGCTAATTAT--CTAGTGATCACTT----AT--T------TCTAAACAA----------G-AAATTTCA----------AATTTCTTTATG-------TTCTCTG---GTT--ATTTTAA-GTAA-TGAAGGCCATCTTGAAT-----CTTAatgcaaggaaacttaatgccatacacagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGCAGATGGTGGACAAATTACCATCACATGAGCCCTGCTG
Alignments
lowQualScore : 11 1111 22222222222222 1 44444444444444444444444444444 1111111 111111 11111 1111 222222222222 11111111111 333333333333333 6666666666666666666666666 11 11111111 1111
lowQualScore : 7 33 8 0 1 88 7777 555 1 1 88888888888888 1 5 77777777777777777777777777777 6 8888888 888888 66 666 5 11 22222 8888 0 999999999999 1 1 88888888888 55 0 5 0 3 9 6 1 666666666666666 22 6 5 1 1 0 2222222222222222222222222 5 66 8 0 2 00 88888888 2 22 3333
lowQualScore : . .. . . . .. .... ... . . .............. . . ............................. . ....... ...... .. ... . .. ..... .... . ............ . . ........... .. . . . . . . . ............... .. . . . . . ......................... . .. . . . .. ........ . .. ....
lowQualScore : 0 22 0 8 0 88 0000 222 0 0 00000000000000 7 0 77777777777777777777777777777 7 6666666 777777 99 444 0 66 55555 7777 3 333333333333 0 0 66666666666 22 1 7 1 2 3 7 0 666666666666666 00 7 0 0 0 3 3333333333333333333333333 0 99 5 2 7 66 88888888 5 88 9999
consensus : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTACANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
Reference ( family-428 ) : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTACANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|1 : ATTTTAAACCCTAA-GGACACCATTTGAACAAATCTAACAG--AACTATAGTTGGTCACCATTACTACAT--TAAC-ATTTTGAA-AAT---CTGTTAG-GCTGTTCAAG-AGAAGAAGATTT-TTTAAA-------TTTT-TG---ACT--ATTTTCA-GTAA-TGGCGGCCATCTTGAAT-----TTCAGA--T-GGAAAA------------AATATA----TC--TTCTGTAT-AGTCTCCTA-TGCATCAGAAAC-ACCCATGTGAAGTTT----C-AGTTTAAT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACAGAC----GACACATGATG--GAAGA--CAG-CCA--ATGCGTCATCGCAT--AAGCACTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|10 : GCTGACAAATA--TGG-G-ATG-CT--GA-----CAG-ACA--GAACACTATCATAT--AAGCTCAC----CTGGCCTTTGAACAGAAGAGC----AAA
gi|11 : caTACA---TAGCTTGGTGGTTTCAGGT-AGAGTGCTGCTGACGGA-A---GACA-A----T--GA--A--CAACACA--ACGCACCGTAGTAT--AAtaac
gi|12 : ttATT--GA--AAACGA-ACA--AGGCGTCATTGCATTTGAGCTTGT----CTGGCCTTTAGCCAGCACAGCTTTTAAAAA
gi|13 : GACA---GATTATGG--A--CAA-ATT--A----TCATGACAT--GAGCCCTT----CTGACCTTTTGACATTAGAGC---TAAAAAT
gi|14 : GTCATCGAAC--AAGCACTT----CTGGCATTTGCCAAATTGAGC---TAAACAT
gi|15 : GTAC-AGTTTCACA-TACATGAAAAAC-ATCCATTTGAAGTTta
gi|2 : TTTTA--CC-TAAAGGACACC-TTTTTGTAAA-CTGACCA--AACTGTATATTGTGATCATTTCCA-AT--TAAATATTTTCAGCAGT---TTGCT-----TGTTAATG-ATAA---GAATT-TTTACCCCTTTTTTTTT-TA---AAT--ATTTTTAAGCAA-TGGCAGCCATCTTGAAC-----TTTAGATCC-AAAAAA------------AAAATAAAAATA--TTGTGTAC-AGTTTCACA-TACATGACAAACAATCC-TTTGAAGTTTGAGGTGGGTCCTCTGTGGCCGAGTGGTCACACAG-AAAgga
gi|3 : gaggtcattcA----TC--TTGTGAAC-AGCCTCACA-TACATGAGAAGC-ATCCAAGTGAAGTTT----TGAGTA-----TAGCC-AGTGACTTTA
gi|3 : GTCT----CTAATACAGC-CGACCTTGTGGTTTCAAAG-AAACTACAGTTTACGGACAATTGACATATAATT-----------A-ACA--ACGTGTCATC-CATG-AAGTGGTT----CTGACCTTTGGTAAGATGAGC---TAAAGAttgctagtctatatgtctctaatacagccgaccttgtggtttcaaagaaactacagtttacggacaattgacatataattaacaacgtgtcatccatgaagtggttctgacctttggtaagatgagctaaagaaatg
gi|4 : atcttgtgaacagcctcacatacatgagaagcatccaagtgaagttttgagtatagccagtgactttattgctagtctatatTTTTAAATC-TAG-GGACACCATTTAAACAAATGTAACAA--AACTATAGTTGGTCATCATTATTACAT--AAAG-ATTTTGAA-AAT---ATGTT-GGACCGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-GG---ACT--ATTTTTA-GTAA-CGGTGGCCATCTTGAAT-----TTCAGAT-C-GAAAAA------------AAAAAA----TCAAATATGTACAAGTCTGACA-TACaatg
gi|5 : gggtcatT--ATTTTG--TTAA-TG-CAGTGATCTTGA-T-----TTTGGA--CTGAAAAAGATTTAAAACAAAATAGA----TC--T-GT-TA--ATTCTCAAA-C-CA-GA-AAGC-ATCAATATTAAGTTT-----------ACT-TGGCATTGTGGTTTCAGAGTAGA-----GATAACGGACAC-TGACA---GACT--G---A--CAA-GCATCATGTGTCATCATAT--AAAC---TAAAACTGAC--TTG---AGTAGAGA---CAAAca
gi|6 : -GGACACCATTTGCACAACT-TGTCAT--GACTGTGGCTTGTAATAGTTTC---------AG-ATT--GCA-AAT---TTGTT----CAGT--------------ATTT-CTTGAG-------GTGT--A---ATT--ATTTTAT-ATAG-TGGTGGCCATCTTGAAT-----GTTGGG--G-GTAAAA------------CACATA----AC--TTCTGTAT-Ag
gi|7 : tcatttttctatatttcatAAG-------TTTT-TT---ATC--ATTTTCA-GTAAGCGTGGGCC-TCTTGAATATTTTTTTA-----------A------------AATAAG------------GTGC-AA-CTTACAGTA---------------ATGTCAAGTTT----AGAGTACAAC-TAGTCTAGTGGTTTTAGAT-AAAGTGTTTGTAATGTAC----GAC-----------A--A--CAG-GCA--ATAAACCATCACAT--AAA------------------GGCCCGTAGAGC----AAAAAaactgctctctattataaacactgtgaa
gi|8 : ACATAGCAAT-ATTTTGAACAATGAATCTTA-G-AAAGTTCATTTAGTAT--GATTT-T--AAG-------ATTT-GGTCTATTCTATTTTTA-GTAA-CAGCAGCCATCTTGAAT-----CTCAAA--C-AAATAA------------AACAGG----T
gi|9 : tcATTTCAGACG--AA-GGACATCATTTGTATAAACCTGATGGCTAATTAT--CTAGTGATCACTT----AT--T------TCTAAACAA----------G-AAATTTCA----------AATTTCTTTATG-------TTCTCTG---GTT--ATTTTAA-GTAA-TGAAGGCCATCTTGAAT-----CTTAatgcaaggaaacttaatgccatacacagt
blockSeqs : A T A T TG GGCT ATA T G TCCAATTAAAT T C GAATCTTAGAAAGTTCATTTAGTAT C CCTTTTT GGTCT CT TAA G GC ATTTT TCC GATTTAAAACAA A T AAAATATTG CA G T A A T GAGGTGGGTCCTCTG TG T G T C CAATTGACATATAATT C TC A A TT TAAAA C AA TTTT
blockSeqs : G T . A CC CA AGT G C ATTACATAAAG T C ATGTTGGACCGTTCATGAGAA . . CTG . TA . GT . TC . A A TCAAATA C . T C . T CTAATACAGC GA . C A C CACTGACAGACTGA . . C G G TCAC C GC T
blockSeqs : . . . C C AA GGC T A TCAG T C TTGCTTGTTAATGATAA . . TA . AT . GT . CT . T G TCTTG C . T G . G AGAGTACAAC TT . G T T TATGGGATGCTGA . . G G . TTGT C GA T
blockSeqs : . T T AT C A G TATT C . TTGTTCAGT . . GG . CA . TG . G . C T ACTTC C . . . . A TGAGTA TT . . . A AGACAATGAA . . C A . CCTT A CC T
blockSeqs : . . GAAATTTCA . . TT . TA . GC . C . T A TCTG T . . . . G ACT TA . G CGACAA . . T G . ACTT C GT C
blockSeqs : . A . AA . AA . . . C G . C . A . . T A . GGTT . GC .
blockSeqs : . G . C . . . . . A . . . . .
blockSeqs : . .
blockSeqCons : TTGTTGAAAGTTCATAAA*********** TC** NNAGTACGC****** CATGACATGTGA*************
originalCons : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTGTT-G-ACNGTTCATG-AGAA---GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGA--C-GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTT----CGAGTACANT-TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGACA-ATGATT--GA--A--CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
finalCons : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAATTTGTTGAAAGTTCATAAA-----------GATTT-TTTAAG-------TTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT-----TTTAGATC--GAAAAA------------AANANA----TC--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTTNNAGTACGC------TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACATGACATGTGA-------------CAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGCAGATGGTGGACAAATTACCATCACATGAGCCCTGCTG
Alignments
lowQualScore : 11 1111 22222222222222 1 888888888888888888888888888888888888 111111 111111 111 33333333333333333333333333333333 5555555555555555555 555555555555555555 11 11111111 1111
lowQualScore : 7 33 8 0 1 88 7777 555 1 1 88888888888888 1 5 000000000000000000000000000000000000 6 6 999999 888888 66 666 5 11 66 0 000 00000000000000000000000000000000 55 0 5 0 3 9 6 1 9999999999999999999 22 6 5 1 1 0 111111111111111111 5 66 8 0 2 00 88888888 2 22 3333
lowQualScore : . .. . . . .. .... ... . . .............. . . .................................... . . ...... ...... .. ... . .. .. . ... ................................ .. . . . . . . . ................... .. . . . . . .................. . .. . . . .. ........ . .. ....
lowQualScore : 0 22 0 8 0 88 0000 222 0 0 00000000000000 7 0 000000000000000000000000000000000000 7 7 222222 777777 99 444 0 66 99 9 333 11111111111111111111111111111111 22 1 7 1 2 3 7 0 9999999999999999999 00 7 0 0 0 3 666666666666666666 0 99 5 2 7 66 88888888 5 88 9999
consensus : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTG-TT-G--AA--GTTCAT-------A--AG-ATT-T-TT------TAAGTTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT--TTTAGATCGAAAAA------------AANAN-----AT--C--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTTCGAGT--AC-G-T------TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGAC-ATG--T----GACAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
Reference ( family-428 ) : ATTTTAAACC-TAA-GGACACCATTTGNACAAATCTGACGG--AACTATAGCTNGTNATCATTTCTACAT--TAAN-ATTTTGAACAAT---TTG-TT-G--AAA-GTTCATA------A--AG-ATT-T-TT------TAAGTTTT-TG---ATT--ATTTTNA-GTAA-CGGCGGCCATCTTGAAT--TTTAGATCGAAAAA------------AANAN-----AT--C--TTGTGTAC-AGTCTCACA-TACATGAGAAAC-ATCCATGTGAAGTTTNNAGT--AC-G-C------TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACGGACA--TGAC-ATG--T----GACAA-ACA--ACGCGTCATCGCAT--AAGCNCTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|1 : ATTTTAAACCCTAA-GGACACCATTTGAACAAATCTAACAG--AACTATAGTTGGTCACCATTACTACAT--TAAC-ATTTTGAA-AAT---CTG-TTAG--GCT-GTTCA-AGAGAAGA--AG-ATT-T-TT------TAAATTTT-TG---ACT--ATTTTCA-GTAA-TGGCGGCCATCTTGAAT--TTCAGAT-GGAAAA------------AATAT-----AT--C--TTCTGTAT-AGTCTCCTA-TGCATCAGAAAC-ACCCATGTGAAGTTTC-AGTTTA--A-T------TGGCCTAGTGGTTTCAGAG-AAAGTGCTGCTAACAGACG--ACAC-ATGA-TGGAAGACAG-CCA--ATGCGTCATCGCAT--AAGCACTT----CTGGCCTTTGGCCAGTAGAGC---TAAAAAT
gi|10 : GCTGACAAATA--TGGG-ATGC-T----GACAG-ACA--GAACACTATCATAT--AAGCTCAC----CTGGCCTTTGAACAGAAGAGC----AAA
gi|11 : ca------TAGCTTGGTGGTTTCAGGT-AGAGTGCTGCTGACGGA-A---GACAATG-------AACAACACA--ACGCACCGTAGTAT--AAtaac
gi|12 : tttacaACGA-ACA--AGGCGTCATTGCATTTGAGCTTGT----CTGGCCTTTAGCCAGCACAGCTTTTAAAAA
gi|13 : attgaaaGACA---GATTATG-------GACAA-ATT--A----TCATGACAT--GAGCCCTT----CTGACCTTTTGACATTAGAGC---TAAAAAT
gi|14 : GTCATCGAAC--AAGCACTT----CTGGCATTTGCCAAATTGAGC---TAAACAT
gi|15 : GTAC-AGTTTCACA-TACATGAAAAAC-ATCCATTTGAAGTTta
gi|2 : TTTTA--CC-TAAAGGACACC-TTTTTGTAAA-CTGACCA--AACTGTATATTGTGATCATTTCCA-AT--TAAATATTTTCAGCAGT---TTGCTT-GTTAA----TGATA------A--GA-ATT-T-TTACCCCTTTTTTTTT-TA---AAT--ATTTTTAAGCAA-TGGCAGCCATCTTGAAC--TTTAGATCCAAAAA------------AAAAATAAAAAT--A--TTGTGTAC-AGTTTCACA-TACATGACAAACAATCC-TTTGAAGTTTGAGGT--GG-G-TCCTCTGTGGCCGAGTGGTCACACAG-AAAgga
gi|3 : gaggtcattc-----AT--C--TTGTGAAC-AGCCTCACA-TACATGAGAAGC-ATCCAAGTGAAGTTTTGAGT--A-----------TAGCC-AGTGACTTTA
gi|3 : GTCTCTAAT--ACAG-C------CGACCTTGTGGTTTCAAAG-AAACTACAGTTTACGGACAATTGAC-ATA--T----AATTA-ACA--ACGTGTCATC-CATG-AAGTGGTT----CTGACCTTTGGTAAGATGAGC---TAAAGAttgctagtctatatgtctctaatacagccgaccttgtggtttcaaagaaactacagtttacggacaattgacatataattaacaacgtgtcatccatgaagtggttctgacctttggtaagatgagctaaagaaatg
gi|4 : atcttgtgaacagcctcacatacatgagaagcatccaagtgaagttttgagtatagccagtgactttattgctagtctatatTTTTAAATC-TAG-GGACACCATTTAAACAAATGTAACAA--AACTATAGTTGGTCATCATTATTACAT--AAAG-ATTTTGAA-AAT---ATG-TT-G--GACCGTTCATG------AGAAG-ATT-T-TT------TAAGTTTT-GG---ACT--ATTTTTA-GTAA-CGGTGGCCATCTTGAAT--TTCAGATCGAAAAA------------AAAAA-----AT--CAAATATGTACAAGTCTGACA-TACaatg
gi|5 : gggtcatT--ATTTTG--TTAA-TG-CAGTGATCTTGA-T--TTTGGACTGAAAAAGATTTAAAACAAAATAG-----AT--C--T-GT-TA--ATTCTCAAA-C-CA-GA-AAGC-ATCAATATTAAGTTT-------AC---T------TGGCATTGTGGTTTCAGAGTAGA-----GATAACGGACAC-TGAC-A-GACT----GACAA-GCATCATGTGTCATCATAT--AAAC---TAAAACTGAC--TTG---AGTAGAGA---CAAAca
gi|6 : -GGACACCATTTGCACAACT-TGTCAT--GACTGTGGCTTGTAATAGTTTC---------AG-ATT--GCA-AAT---TTG-TT-C--A---GT-----------------ATT-T-CT------TGAGGTGT--A---ATT--ATTTTAT-ATAG-TGGTGGCCATCTTGAAT--GTTGG---GGGTAA------------AACAC-----ATAAC--TTCTGTAT-Ag
gi|7 : tcatttttctatatttcatAAGTTTT-TT---ATC--ATTTTCA-GTAAGCGTGGGCC-TCTTGAATATTTT---TTTAAAAT------------AAG------------------GTGC-AA-CTTACAGTA---------------ATGTCAAGTTTAGAGT--AC-AAC------TAGTCTAGTGGTTTTAGAT-AAAGTGTTTGTAATGTAC----GAC-A----------ACAG-GCA--ATAAACCATCACAT--AAA------------------GGCCCGTAGAGC----AAAAAaactgctctctattataaacactgtgaa
gi|8 : ACATAGCAAT-ATTTTGAACAATGAATCT-TA-G--AAA-GTTCATT------T--AGTATGAT-TT------TAAGATTT-GGTCTATTCTATTTTTA-GTAA-CAGCAGCCATCTTGAAT--CTCAAA-CAAATAA------------AACAG-----GT--
gi|9 : tcATTTCAGACG--AA-GGACATCATTTGTATAAACCTGATGGCTAATTAT--CTAGTGATCACTT----AT--T------TCTAAACAA-----------G--AAA-TTTCA------------A-ATT-TCTT------TATGTTCTCTG---GTT--ATTTTAA-GTAA-TGAAGGCCATCTTGAAT--CTTAatgcaaggaaacttaatgccatacacagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGCAGATGGTGGACAAATTACCATCACATGAGCCCTGCTG