lowQualScore : 1 1 2 11111 1 2222 333333 555555555 5555555555555 55 11 1 1111 4444444 1 22 555555555555555555555 111 111111 4444444444444444 111 2222
lowQualScore : 6 9 2 55 5 4 0 0 6 0 7 0 77777 0 1111 000000 000000000 6 99 7777777777777 66 6 6 55 22 2 7 7777 6 5555555 4 1 3 11 66 1 6 9 1 333333333333333333333 000 6 11 444444 2 1 3333333333333333 6 555 5555 1
lowQualScore : . . . .. . . . . . . . . ..... . .... ...... ......... . .. ............. .. . . .. .. . . .... . ....... . . . .. .. . . . . ..................... ... . .. ...... . . ................ . ... .... .
lowQualScore : 0 0 2 66 0 6 8 8 8 0 2 0 00000 0 2222 555555 000000000 0 00 5555555555555 55 0 0 00 00 5 0 0000 0 0000000 0 0 3 00 77 0 0 7 2 333333333333333333333 000 3 11 777777 5 0 2222222222222222 7 333 0000 0
consensus : CAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTNAT-TCNTCGAATTT--NATTTT-TTCAT----GTATTTTA---TATATGC---------ACGAATCAANCAATGAAAAAATTCANTGNNGGNNATGTATTGTGTCA--TTTAAANATTCCGTGGCCNAGTGATCCAAGGCGCCGTTTCAAGACCACTATGCCTCNCACCGTT-AAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATN--TGGG---AAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTC--ATTNTGANGTCTT-CTCCAC-CAATAAAA-T-GGAT----ATGCCA
Reference ( gi|2 ) : CAATATTGATCACCGCTAAAATGATCATAAGCGACAGGGACTACTTTTTAT-TCATCGAA-TT--AATTTT-TTCAT----GTATTTGA---TATATGC---------ACAAATTAAATAATAAATATA-T-ATT-CTGACAATGCATTATGTCACTTTTAAAAATTCTATGGCCGAGTGTTCTACGATGCCGTCTCAAG-TCACT-TACCTCTCACTGTT-AAGGCCGTAGGTTCGAGTCCCACTTGTTTCAAAAACTTTGTG--TTAG---AAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTC--ATTCTGCGGTATTTCTCCAC-CAATAAAA-T-GGAT----ATGCTACCACCGACCTTCTGTGTATTG
gi|6 : CAGTGTTGATCACCGCCAAAATGATACTACGCGACAAGGCCTACTTTTTATATTTTCGAATTT--CATTTT-TTCATGACGGTATTTTA---TATATGC---------
gi|5 : ttttagccggccttattccaaaggtttatcttgcttatgtcggcgtggtcaaagtttgCAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTCAT-TCCTCAAA-TTTCACTGTT-ATTAT----TTATTTTATTTTATACTCCCAGTAGAAATAAATCAACCAATAAAAAAATT-AGT-GTGGATATGTATTGTGTCA--TTTAAA
gi|10 : ttttagccggacttttgaccaataacgtaaccctggttatgtagccgtgatcatggttctCAGTCTTTATCAACGCTCAAATGAT--------ACAGAGACTACTTT
gi|14 : ttttagtcagcctttttgcttagtttaaggcatagctctgtttatgtacttgtgatcacggtttgTGATTACCACAAAAATGATCATACGCGACAGAAAGT--T-----T-TCGTCGAATTT--CATTTTATTCGT----GTATC--A---TATATGC---------Agcgtacc
gi|9 : TCACCCCTAAAACTATCATACACGACAACGGCTATTTTTGAT-TCACCAAA-TT--AA-TTT-TCCAT----GTATTTCG---TACATGCA--------ACGAATCAAACAATGAAAAAA-TCATTGCGGACA
gi|3 : ATTCCGTGGCCGAGTGATCTAAGGCGTCATTTCAAGATC-CTATGCCTCATACCGTT-ATGGTCGTAGGTTCGAGTCCTGCTCGCTACAAAAACCTTA----------------------GC---CAGATAGTTTCAGAA-----------TGAT-----TCAAATTC--ATTATAATGTCTTACTCAAC-CAATAAAACT-GGATCGACATGCT
gi|4 : atccattttaataatcattttaattttaaagacattttagcgtgtTCCGTGACCTAATGATCCAAGGCGCCGTTTCAAGACCACT-TACCTCTCACCGCT-AAGG-------TTCGAGTCCCGCTCACTCCAAAAACTCTTTT--TGGG---AAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTC--ATTCTGAGGTTTGCCTCTAC-CAACAAAA-CAAGAT----ATGCCtaaatacttcatcaattattatcgaatatgattcaataactcattaaattaattcaaaattttcccaacaggcggtatgggccaaggccattgcacagtatt
gi|1 : aattcgaatattgCTGTTCAAGGTTGTAGGTTTGAGTCCTGCTTGCTCTATAAACTTTATA--TGAA---AAAGT----TTGC---CTGTTACTTGC-----AAC-----AGTGGTTCTACTTAGATTC--TTTCTGATGTCTTACTCCAT-CAATAAAACT-GGAT----ATGCCtaaatgtctgttaatcctgaaatatgttgaaaatgtcgttaaaaccctttcagaaatattaatacgtggacatgggtgaaatcgatttcagcattgccgtgtggggccttaaggta
gi|11 : atttcattttgtcataaattctatagtattgcaataaattgttttaaatgcattaaattttgtttgttgtgatattgtacagccagatttgaggcactctctggctgagtggtctgaagagCAGACACTTTATGGATTGGTTGAAAATGACACTGCATACAGTTACTTGTGGAAGGACATCATGATGGTTTTACCAAAATTT--AT---------TTCCTCTAT-CAATAAAC-T-GAAT----Atgtttaacctgaaaagtgttgaaaatgacattaaaccccatttaaaaaacaactaaaagaaacaacagattctcccagctcaaacggtaagaagtatttggttgaatgaatgaaataaggttttagggcataccagcaggtcatacgttataatttatgatgccaacagg
gi|13 : AG---AAAAT----TTGC---CAGTTACTTACAGAAGAGC-----AGAGATTTT
gi|15 : tgGC---CAGTTACTTGCAGAAGAAC-----GGTGATTTCA-TAAGTTTT--GTTAT-TAGTATT--TGCGCGCAATACAA-T-TCATA---ATGCtattatgcatattaaagtgtaagcctttgaatacaaaatatgtctcataaat
gi|16 : ---CAGTTACTTA-AGAAGGAC-----AGTTATTCTACTCAGA-TCAAAGTTTGCAG------TTCAC-AAATAAAA-
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CAAAATGAGAAAGTGTTTTGCTTCTCCTGAAATATTTTCAAAAATGCACTCGTTTTTTGCACTAAACAGATGACATGTGAACACGAGTATAATCAATTTGAACATTGCCGTGTGGACCTTAAATTA
Unaligned ( gi|8 ): ACTTTGTCATTAAATTTGTCAGTTATTGGCAGAGATCGTAGTTCCACTTGGATTCACTTGTGATCTTTCTTTATCTGGATGTCATCAATTTGTTGAAAATGGCATTAAACCC
Unaligned ( gi|12 ): TTACTTGTCTTATTAGGACAATGATTCTAGTCAATTCAATCTGAGGTCCACCAGGACAATTTGTTCCATGATTACAATCCTGTTACATGTTGAAAATG
Unaligned ( gi|17 ): TATGTGAACACGAGTACAGTCAATTTCAACAGTGCCTCGTGCTCTTTAATTA
Alignments
lowQualScore : 11 1111 111 333333333333 222222 11 333333333 1 222 22 11 11 333333333 2222222222 1111 11111 2222222222222222 111
lowQualScore : 0 2 2 3 8 1 00 888 4444 111 6 6 555555555555 0 1 888888 44 111111111 22 3 333 77 11 33 0 1 1 2 0 7 555555555 44 0 6 0 0000000000 4444 888 4 22222 0 5555555555555555 5 777 5
lowQualScore : . . . . . . .. ... .... ... . . ............ . . ...... .. ......... .. . ... .. .. .. . . . . . . ......... .. . . . .......... .... ... . ..... . ................ . ... .
lowQualScore : 2 2 5 8 0 0 77 333 2222 777 7 7 111111111111 2 0 888888 00 000000000 00 3 333 55 00 88 2 0 2 0 2 0 000000000 88 2 5 2 9999999999 2222 888 2 55555 7 4444444444444444 7 333 7
consensus : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATT-ATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-T-C--TCCAC-CAATAAAA-T-GGAT-ATGCCA
Reference ( family-4247 ) : CAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTNAT-TCNTCGAATTTNATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAA-AAATTCANTGNNGGNNATG-TATTGT---GTCA--TTTAAAN-ATT--CCGTGGCCNAGTGATCCAAGGCGCCGTTTCAAGACCACTATGCCTCNCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATN---TGG--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTNTGANGT-CT-T-C--TCCAC-CAATAAAA-T-GGAT-ATGCCA
gi|1 : ATTTCATTTT-G-TCAT----AAATTCTA---TAGTATTGC---------A---ATAAATTGTTTTAAATGCATTAAATT--TTGTTTGTTGTGATATTGTACAGCCAGATTTGAGGCACT--CTCTGGCTGAGTGGTCTGAAGAGCTGT-------------------------TCAAGGTTGTAGGTTTGAGTCCTGCTTGCTCTATAAACTTTATA---TGA--AAAAGT----TTGC---CTGTTACTTGC-----AAC-----AGTGGTTCTACTTAGATTCTTTCTGATGT-CT-TAC--TCCAT-CAATAAAACT-GGAT-ATGCCA
gi|10 : CAGTCTTTATCAACGCTCAAATGAT--------ACAGAGACTACTTTtgtttaacctgaaaagtgttgaaaatgacattaaaccccatttaaaaaacaactaaaagaaacaacagattctcccagctcaaacggtaagaagtatttggttgaatgaatgaaataaggttttagggcataccagcaggtcatacgttataatttatgatgccaacagg
gi|11 : ttttagtcagcctttttgcttagtttaaggcatagctctgtttatgtacttgtgatcacggtttgCAGACACTTTATGGATTGGTTGAAAATGACACTGCATACAGTTACTTGTGGAAGGACATCATGATGGTTTTACCAAAATTTATT---------T-C-C--TCTAT-CAATAAAC-T-GAAT-gcgtacc
gi|13 : ---TGA--GAAAAT----TTGC---CAGTTACTTACAGAAGAGC-----AGAGATTTT
gi|14 : TGATTACCACAAAAATGATCATACGCGACAGAAAGT--T-----T-TCGTCGAATTTCATTTTAT-TCGT----GTA--TCA---TA-TAT-GC---------Atattatgcatattaaagtgtaagcctttgaatacaaaatatgtctcataaat
gi|15 : GC---CAGTTACTTGCAGAAGAAC-----GGTGATTTCA-TAAGTTTTGTTATTA-GT-AT-T----TGCGCGCAATACAA-T-TCATAATGC
gi|16 : ---CAGTTACTTA-AGAAGGAC-----AGTTATTCTACTCAGA-TCA-----AAGT-TT-G-CAGTTCAC-AAATAAAA---AGTT-TTGCCA
gi|2 : CAATATTGATCACCGCTAAAATGATCATAAGCGACAGGGACTACTTTTTAT-TCATCGAATT-AATTTT-T-TCAT----GTATTTGA---TA-TAT-GC---------ACAAATTAAAT------AATAAAT-ATAT--ATT-CTGACAATG-CATTAT---GTCACTTTTAAAA-ATT--CTATGGCCGAGTGTTCTACGATGCCGTCTCAAG-TCACT-TACCTCTCACTGTTAAGGCCGTAGGTTCGAGTCCCACTTGTTTCAAAAACTTTGTG---TTA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGCGGTATT-T-C--TCCAC-CAATAAAA-T-GGAT-ATGCTA
gi|3 : -ATT--CCGTGGCCGAGTGATCTAAGGCGTCATTTCAAGATC-CTATGCCTCATACCGTTATGGTCGTAGGTTCGAGTCCTGCTCGCTACAAAAACCTTA----------------------GC---CAGATAGTTTCAGAA-----------TGAT-----TCAAATTCATTATAATGT-CT-TAC--TCAAC-CAATAAAACT-GGAT-ccaccgaccttctgtgtattg
gi|4 : atccattttaataatcattttaattttaaagacattttagcgtgtA--TTCGAAT-ATTGTCCGTGACCTAATGATCCAAGGCGCCGTTTCAAGACCACT-TACCTCTCACCGCTAAGGT-------TCGAGTCCCGCTCACTCCAAAAACTCTTTT---TGG--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGAGGT-TTGC-C--TCTAC-CAACAAAA-CAAGAT-ATGCCAcgacatgcttaaatacttcatcaattattatcgaatatgattcaataactcattaaattaattcaaaattttcccaacaggcggtatgggccaaggccattgcacagtatt
gi|5 : aCAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTCAT-TCCTCAAATTTCACTGT-TATTAT----TTATTTTATTTTA-TAC-TCCCAGTAGAAATAAATCAACC------AATAAAA-AAATT-AGTG-TGGATATG-TATTGT---GTCA--TTTAAAtaaatgtctgttaatcctgaaatatgttgaaaatgtcgttaaaaccctttcagaaatattaatacgtggacatgggtgaaatcgatttcagcattgccgtgtggggccttaaggta
gi|6 : ttttagccggacttttgaccaataacgtaaccctggttatgtagccgtgatcatggttctCAGTGTTGATCACCGCCAAAATGATACTACGCGACAAGGCCTACTTTTTATATTTTCGAATTTCATTTT-T-TCATGACGGTATTTTA---TA-TAT-GC---------
gi|9 : ttttagccggccttattccaaaggtttatcttgcttatgtcggcgtggtcaaagtttgTCACCCCTAAAACTATCATACACGACAACGGCTATTTTTGAT-TCACCAAATT--AATTT-T-CCAT----GTATTTCG---TA-CAT-GCA--------ACGAATCAAAC------AATGAAA-AAA-TCATTGCGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAAATGAGAAAGTGTTTTGCTTCTCCTGAAATATTTTCAAAAATGCACTCGTTTTTTGCACTAAACAGATGACATGTGAACACGAGTATAATCAATTTGAACATTGCCGTGTGGACCTTAAATTA
Unaligned ( gi|8 ): ACTTTGTCATTAAATTTGTCAGTTATTGGCAGAGATCGTAGTTCCACTTGGATTCACTTGTGATCTTTCTTTATCTGGATGTCATCAATTTGTTGAAAATGGCATTAAACCC
Unaligned ( gi|12 ): TTACTTGTCTTATTAGGACAATGATTCTAGTCAATTCAATCTGAGGTCCACCAGGACAATTTGTTCCATGATTACAATCCTGTTACATGTTGAAAATG
Unaligned ( gi|17 ): TATGTGAACACGAGTACAGTCAATTTCAACAGTGCCTCGTGCTCTTTAATTA
Alignments
lowQualScore : 1111 111 333333333333 222222 11 11 1 222 22 11 11 1111111 1111111111 1111 11111 1111111 222 222
lowQualScore : 0 0 2 3 8 6 7 888 4444 111 6 6 555555555555 0 1 888888 11 00 99 1 3 333 77 11 33 0 1 0 2 8888888 0 33 0 0 6 0 8888888888 4444 888 4 22222 1111111 6 000 99 111
lowQualScore : . . . . . . . ... .... ... . . ............ . . ...... .. .. .. . . ... .. .. .. . . . . ....... . .. . . . . .......... .... ... . ..... ....... . ... .. ...
lowQualScore : 2 3 5 6 0 4 3 333 2222 777 7 7 111111111111 2 0 888888 00 22 00 0 3 333 55 00 88 2 2 2 5 8888888 8 88 2 8 5 2 2222222222 2222 888 2 55555 2222222 7 000 22 777
consensus : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-T-C--TCCACCAATAAAA-T-GGATATGCCA
Reference ( family-4247 ) : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-T-C--TCCACCAATAAAA-T-GGATATGCCA
gi|1 : ATTTCATTTT-G-TCAT----AAATTCTA---TAGTATTGC---------A---ATAAATTGTTTTAAATGCATTAAATT-TTGTTTGTTGTGATATTGTACAGCCAGATTTGAGGCACT--CTCTGGCTGAGTGGTCTGAAGAGCTGTTC-------------------------AAGGTTGTAGGTTTGAGTCCTGCTTGCTCTATAAACTTTATA---TGA--AAAAGT----TTGC---CTGTTACTTGC-----AAC-----AGTGGTTCTACTTAGATTCTTTCTGATGT-CT-TAC--TCCATCAATAAAACT-GGATATGCCA
gi|10 : CAGTCTTTATCAACGCTCAAATGAT--------ACAGAGACTACTTTtgtttaacctgaaaagtgttgaaaatgacattaaaccccatttaaaaaacaactaaaagaaacaacagattctcccagctcaaacggtaagaagtatttggttgaatgaatgaaataaggttttagggcataccagcaggtcatacgttataatttatgatgccaacagg
gi|11 : ttttagtcagcctttttgcttagtttaaggcatagctctgtttatgtacttgtgatcacggtttgCAGACACTTTATGGATTGGTTGAAAATGACACTGCATACAGTTACTTGTGGAAGGACATCATGATGGTTTTACCAAAATTTA--------T-TT-C-C--TCTATCAATAAAC-T-GAATAgcgtacc
gi|13 : ---TGA--GAAAAT----TTGC---CAGTTACTTACAGAAGAGC-----AGAGATTTT
gi|14 : TGATTACCACAAAAATGATCATACGCGACAGAAAGT--T-----T-TCGTCGAATTTCATTTTAT-TCGT----GTA--TCA---TA-TAT-GC---------Atattatgcatattaaagtgtaagcctttgaatacaaaatatgtctcataaat
gi|15 : GC---CAGTTACTTGCAGAAGAAC-----GGTGATTTCA
gi|16 : ---CAGTTACTTA-AGAAGGAC-----AGTTATTCTACTCAGA-TCA-----AAGT-TT-G-CAGTTCACAAATAAAA---AGTTTTGCCAtaagttttgttattagtatttgcgcgcaatacaattcataatgc
gi|2 : CAATATTGATCACCGCTAAAATGATCATAAGCGACAGGGACTACTTTTTAT-TCATCGAATT-AATTTT-T-TCAT----GTATTTGA---TA-TAT-GC---------ACAAATTAAAT------AATAAAT-ATAT-ATT-CTGACAATG-CATTAT---GTCACTTTTAAAA-ATT--CTATGGCCGAGTGTTCTACGATGCCGTCTCAAG-TCACT-TACCTCTCACTGTTAAGGCCGTAGGTTCGAGTCCCACTTGTTTCAAAAACTTTGTG---TTA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGCGGTATT-T-C--TCCACCAATAAAA-T-GGATATGCTA
gi|3 : -ATT--CCGTGGCCGAGTGATCTAAGGCGTCATTTCAAGATC-CTATGCCTCATACCGTTATGGTCGTAGGTTCGAGTCCTGCTCGCTACAAAAACCTTA----------------------GC---CAGATAGTTTCAGAA-----------TGAT-----TCAAATTCATTATAATGT-CT-TAC--TCAACCAATAAAACT-GGATccaccgaccttctgtgtattg
gi|4 : atccattttaataatcattttaattttaaagacattttagcgtgtA--TTCGAAT-ATTGTCCGTGACCTAATGATCCAAGGCGCCGTTTCAAGACCACT-TACCTCTCACCGCTAAGGT-------TCGAGTCCCGCTCACTCCAAAAACTCTTTT---TGG--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGAGGT-TTGC-C--TCTACCAACAAAA-CAAGATATGCCAcgacatgcttaaatacttcatcaattattatcgaatatgattcaataactcattaaattaattcaaaattttcccaacaggcggtatgggccaaggccattgcacagtatt
gi|5 : aCAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTCAT-TCCTCAAATTTCACTGT-TATTAT----TTATTTTATTTTA-TAC-TCCCAGTAGAAATAAATCAACC------AATAAAA-AAATTAGTG-TGGATATG-TATTGT---GTCA--TTTAAAtaaatgtctgttaatcctgaaatatgttgaaaatgtcgttaaaaccctttcagaaatattaatacgtggacatgggtgaaatcgatttcagcattgccgtgtggggccttaaggta
gi|6 : ttttagccggacttttgaccaataacgtaaccctggttatgtagccgtgatcatggttctCAGTGTTGATCACCGCCAAAATGATACTACGCGACAAGGCCTACTTTTTATATTTTCGAATTTCATTTT-T-TCATGACGGTATTTTA---TA-TAT-GC---------
gi|9 : ttttagccggccttattccaaaggtttatcttgcttatgtcggcgtggtcaaagtttgTCACCCCTAAAACTATCATACACGACAACGGCTATTTTTGAT-TCACCAAATT--AATTT-T-CCAT----GTATTTCG---TA-CAT-GCA--------ACGAATCAAAC------AATGAAA-AAATCATTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAAATGAGAAAGTGTTTTGCTTCTCCTGAAATATTTTCAAAAATGCACTCGTTTTTTGCACTAAACAGATGACATGTGAACACGAGTATAATCAATTTGAACATTGCCGTGTGGACCTTAAATTA
Unaligned ( gi|8 ): ACTTTGTCATTAAATTTGTCAGTTATTGGCAGAGATCGTAGTTCCACTTGGATTCACTTGTGATCTTTCTTTATCTGGATGTCATCAATTTGTTGAAAATGGCATTAAACCC
Unaligned ( gi|12 ): TTACTTGTCTTATTAGGACAATGATTCTAGTCAATTCAATCTGAGGTCCACCAGGACAATTTGTTCCATGATTACAATCCTGTTACATGTTGAAAATG
Unaligned ( gi|17 ): TATGTGAACACGAGTACAGTCAATTTCAACAGTGCCTCGTGCTCTTTAATTA
Alignments
lowQualScore : 1111 111 333333333333 222222 11 11 1 222 22 11 11 1111111 1111111111 1111 11111 1111111 222 222
lowQualScore : 0 0 2 3 8 6 7 888 4444 111 6 6 555555555555 0 1 888888 11 00 99 1 3 333 77 11 33 0 1 0 2 8888888 0 33 0 0 6 0 8888888888 4444 888 4 22222 1111111 6 000 99 111
lowQualScore : . . . . . . . ... .... ... . . ............ . . ...... .. .. .. . . ... .. .. .. . . . . ....... . .. . . . . .......... .... ... . ..... ....... . ... .. ...
lowQualScore : 2 3 5 6 0 4 3 333 2222 777 7 7 111111111111 2 0 888888 00 22 00 0 3 333 55 00 88 2 2 2 5 8888888 8 88 2 8 5 2 2222222222 2222 888 2 55555 2222222 7 000 22 777
consensus : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-T-C--TCCACCAATAAAA-T-GGATATGCCA
Reference ( family-4247 ) : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-T-C--TCCACCAATAAAA-T-GGATATGCCA
gi|1 : ATTTCATTTT-G-TCAT----AAATTCTA---TAGTATTGC---------A---ATAAATTGTTTTAAATGCATTAAATT-TTGTTTGTTGTGATATTGTACAGCCAGATTTGAGGCACT--CTCTGGCTGAGTGGTCTGAAGAGCTGTTC-------------------------AAGGTTGTAGGTTTGAGTCCTGCTTGCTCTATAAACTTTATA---TGA--AAAAGT----TTGC---CTGTTACTTGC-----AAC-----AGTGGTTCTACTTAGATTCTTTCTGATGT-CT-TAC--TCCATCAATAAAACT-GGATATGCCA
gi|10 : CAGTCTTTATCAACGCTCAAATGAT--------ACAGAGACTACTTTtgtttaacctgaaaagtgttgaaaatgacattaaaccccatttaaaaaacaactaaaagaaacaacagattctcccagctcaaacggtaagaagtatttggttgaatgaatgaaataaggttttagggcataccagcaggtcatacgttataatttatgatgccaacagg
gi|11 : ttttagtcagcctttttgcttagtttaaggcatagctctgtttatgtacttgtgatcacggtttgCAGACACTTTATGGATTGGTTGAAAATGACACTGCATACAGTTACTTGTGGAAGGACATCATGATGGTTTTACCAAAATTTA--------T-TT-C-C--TCTATCAATAAAC-T-GAATAgcgtacc
gi|13 : ---TGA--GAAAAT----TTGC---CAGTTACTTACAGAAGAGC-----AGAGATTTT
gi|14 : TGATTACCACAAAAATGATCATACGCGACAGAAAGT--T-----T-TCGTCGAATTTCATTTTAT-TCGT----GTA--TCA---TA-TAT-GC---------Atattatgcatattaaagtgtaagcctttgaatacaaaatatgtctcataaat
gi|15 : GC---CAGTTACTTGCAGAAGAAC-----GGTGATTTCA
gi|16 : ---CAGTTACTTA-AGAAGGAC-----AGTTATTCTACTCAGA-TCA-----AAGT-TT-G-CAGTTCACAAATAAAA---AGTTTTGCCAtaagttttgttattagtatttgcgcgcaatacaattcataatgc
gi|2 : CAATATTGATCACCGCTAAAATGATCATAAGCGACAGGGACTACTTTTTAT-TCATCGAATT-AATTTT-T-TCAT----GTATTTGA---TA-TAT-GC---------ACAAATTAAAT------AATAAAT-ATAT-ATT-CTGACAATG-CATTAT---GTCACTTTTAAAA-ATT--CTATGGCCGAGTGTTCTACGATGCCGTCTCAAG-TCACT-TACCTCTCACTGTTAAGGCCGTAGGTTCGAGTCCCACTTGTTTCAAAAACTTTGTG---TTA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGCGGTATT-T-C--TCCACCAATAAAA-T-GGATATGCTA
gi|3 : -ATT--CCGTGGCCGAGTGATCTAAGGCGTCATTTCAAGATC-CTATGCCTCATACCGTTATGGTCGTAGGTTCGAGTCCTGCTCGCTACAAAAACCTTA----------------------GC---CAGATAGTTTCAGAA-----------TGAT-----TCAAATTCATTATAATGT-CT-TAC--TCAACCAATAAAACT-GGATccaccgaccttctgtgtattg
gi|4 : atccattttaataatcattttaattttaaagacattttagcgtgtA--TTCGAAT-ATTGTCCGTGACCTAATGATCCAAGGCGCCGTTTCAAGACCACT-TACCTCTCACCGCTAAGGT-------TCGAGTCCCGCTCACTCCAAAAACTCTTTT---TGG--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGAGGT-TTGC-C--TCTACCAACAAAA-CAAGATATGCCAcgacatgcttaaatacttcatcaattattatcgaatatgattcaataactcattaaattaattcaaaattttcccaacaggcggtatgggccaaggccattgcacagtatt
gi|5 : aCAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTCAT-TCCTCAAATTTCACTGT-TATTAT----TTATTTTATTTTA-TAC-TCCCAGTAGAAATAAATCAACC------AATAAAA-AAATTAGTG-TGGATATG-TATTGT---GTCA--TTTAAAtaaatgtctgttaatcctgaaatatgttgaaaatgtcgttaaaaccctttcagaaatattaatacgtggacatgggtgaaatcgatttcagcattgccgtgtggggccttaaggta
gi|6 : ttttagccggacttttgaccaataacgtaaccctggttatgtagccgtgatcatggttctCAGTGTTGATCACCGCCAAAATGATACTACGCGACAAGGCCTACTTTTTATATTTTCGAATTTCATTTT-T-TCATGACGGTATTTTA---TA-TAT-GC---------
gi|9 : ttttagccggccttattccaaaggtttatcttgcttatgtcggcgtggtcaaagtttgTCACCCCTAAAACTATCATACACGACAACGGCTATTTTTGAT-TCACCAAATT--AATTT-T-CCAT----GTATTTCG---TA-CAT-GCA--------ACGAATCAAAC------AATGAAA-AAATCATTGC
blockSeqs : C T A A T AT GACG TTT . . CCAGTAGAAATA A . T TA GC C . . CT A GT T C ATCCTA TC C TGGATTGGTT GACA ATA G ATCAT TTCTGCG A TA AG CT
blockSeqs : C C . C T TA . . . . AACG C . A CA C A . . . T . A C ACCACT AT C TGTTA . . A . TTATAAT . GC . CA
blockSeqs : C T . T T T . . . . ACA A . A A G . . A C TCACT TC . TTTGG . . A . TTCTGAG . C . T
blockSeqs : A G . A . T . . . . . . . A . AA . G . T
blockSeqs : C . T . . . . . . G . . . T . .
blockSeqs : . A .
blockSeqs : . G .
blockSeqCons : N** T**
originalCons : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-T-C--TCCACCAATAAAA-T-GGATATGCCA
finalCons : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TTN--C--TCCACCAATAAAAT--GGATATGCCA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAAATGAGAAAGTGTTTTGCTTCTCCTGAAATATTTTCAAAAATGCACTCGTTTTTTGCACTAAACAGATGACATGTGAACACGAGTATAATCAATTTGAACATTGCCGTGTGGACCTTAAATTA
Unaligned ( gi|8 ): ACTTTGTCATTAAATTTGTCAGTTATTGGCAGAGATCGTAGTTCCACTTGGATTCACTTGTGATCTTTCTTTATCTGGATGTCATCAATTTGTTGAAAATGGCATTAAACCC
Unaligned ( gi|12 ): TTACTTGTCTTATTAGGACAATGATTCTAGTCAATTCAATCTGAGGTCCACCAGGACAATTTGTTCCATGATTACAATCCTGTTACATGTTGAAAATG
Unaligned ( gi|17 ): TATGTGAACACGAGTACAGTCAATTTCAACAGTGCCTCGTGCTCTTTAATTA
Alignments
lowQualScore : 1111 111 333333333333 222222 11 11 1 222 22 11 11 1111111 1111111111 1111 11111 1111111 2 222
lowQualScore : 0 0 2 3 8 6 7 888 4444 111 6 6 555555555555 0 1 888888 11 00 99 1 3 333 77 11 33 0 1 0 2 8888888 0 33 0 0 6 0 8888888888 4444 888 4 22222 1111111 0 77 99 111
lowQualScore : . . . . . . . ... .... ... . . ............ . . ...... .. .. .. . . ... .. .. .. . . . . ....... . .. . . . . .......... .... ... . ..... ....... . .. .. ...
lowQualScore : 2 3 5 6 0 4 3 333 2222 777 7 7 111111111111 2 0 888888 00 22 00 0 3 333 55 00 88 2 2 2 5 8888888 8 88 2 8 5 2 2222222222 2222 888 2 55555 2222222 0 77 22 777
consensus : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-NC--TCCACCAATAAAA-T-GGATATGCCA
Reference ( family-4247 ) : CAGTGTTGATCACCGCTAAAATGATCATACGCGACAGAGACTACTTTTTAT-TCGTCGAATTTCATTTT-T-TCAT----GTATTTTA---TA-TAT-GC---------ACGAATCAANC------AATGAAN-AAATTATTGCTGGNTATG-TATTGT---GTCA--TTTGAAN-ATT--CCGTGGCCGAGTGATCTAAGGCGCCGTTTCAAGATCACT-TACCTCTCACCGTTAAGGTCGTAGGTTCGAGTCCCGCTCGCTCCAAAAACTTTATG---TGA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGANGT-TT-NC--TCCACCAATAAAA-T-GGATATGCCA
gi|1 : ATTTCATTTT-G-TCAT----AAATTCTA---TAGTATTGC---------A---ATAAATTGTTTTAAATGCATTAAATT-TTGTTTGTTGTGATATTGTACAGCCAGATTTGAGGCACT--CTCTGGCTGAGTGGTCTGAAGAGCTGTTC-------------------------AAGGTTGTAGGTTTGAGTCCTGCTTGCTCTATAAACTTTATA---TGA--AAAAGT----TTGC---CTGTTACTTGC-----AAC-----AGTGGTTCTACTTAGATTCTTTCTGATGTCTT-AC--TCCATCAATAAAACT-GGATATGCCA
gi|10 : CAGTCTTTATCAACGCTCAAATGAT--------ACAGAGACTACTTTtgtttaacctgaaaagtgttgaaaatgacattaaaccccatttaaaaaacaactaaaagaaacaacagattctcccagctcaaacggtaagaagtatttggttgaatgaatgaaataaggttttagggcataccagcaggtcatacgttataatttatgatgccaacagg
gi|11 : ttttagtcagcctttttgcttagtttaaggcatagctctgtttatgtacttgtgatcacggtttgCAGACACTTTATGGATTGGTTGAAAATGACACTGCATACAGTTACTTGTGGAAGGACATCATGATGGTTTTACCAAAATTTA--------T-TT-CC--TCTATCAATAAAC-T-GAATAgcgtacc
gi|13 : ---TGA--GAAAAT----TTGC---CAGTTACTTACAGAAGAGC-----AGAGATTTT
gi|14 : TGATTACCACAAAAATGATCATACGCGACAGAAAGT--T-----T-TCGTCGAATTTCATTTTAT-TCGT----GTA--TCA---TA-TAT-GC---------Atattatgcatattaaagtgtaagcctttgaatacaaaatatgtctcataaat
gi|15 : GC---CAGTTACTTGCAGAAGAAC-----GGTGATTTCA
gi|16 : ---CAGTTACTTA-AGAAGGAC-----AGTTATTCTACTCAGA-TCA-----AAGT-TT-GCAGTTCACAAATAAAA---AGTTTTGCCAtaagttttgttattagtatttgcgcgcaatacaattcataatgc
gi|2 : CAATATTGATCACCGCTAAAATGATCATAAGCGACAGGGACTACTTTTTAT-TCATCGAATT-AATTTT-T-TCAT----GTATTTGA---TA-TAT-GC---------ACAAATTAAAT------AATAAAT-ATAT-ATT-CTGACAATG-CATTAT---GTCACTTTTAAAA-ATT--CTATGGCCGAGTGTTCTACGATGCCGTCTCAAG-TCACT-TACCTCTCACTGTTAAGGCCGTAGGTTCGAGTCCCACTTGTTTCAAAAACTTTGTG---TTA--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGCGGTATT-TC--TCCACCAATAAAA-T-GGATATGCTA
gi|3 : -ATT--CCGTGGCCGAGTGATCTAAGGCGTCATTTCAAGATC-CTATGCCTCATACCGTTATGGTCGTAGGTTCGAGTCCTGCTCGCTACAAAAACCTTA----------------------GC---CAGATAGTTTCAGAA-----------TGAT-----TCAAATTCATTATAATGTCTT-AC--TCAACCAATAAAACT-GGATccaccgaccttctgtgtattg
gi|4 : atccattttaataatcattttaattttaaagacattttagcgtgtA--TTCGAAT-ATTGTCCGTGACCTAATGATCCAAGGCGCCGTTTCAAGACCACT-TACCTCTCACCGCTAAGGT-------TCGAGTCCCGCTCACTCCAAAAACTCTTTT---TGG--GAAAGT----TTGC---CAGTTACTTGCGGAAGGAC-----GGTGATTTTACTCAGATTCATTCTGAGGT-TTGCC--TCTACCAACAAAA-CAAGATATGCCAcgacatgcttaaatacttcatcaattattatcgaatatgattcaataactcattaaattaattcaaaattttcccaacaggcggtatgggccaaggccattgcacagtatt
gi|5 : aCAGTGTTGATCACCGCCAAAATGATCATACGCGACAGAGACTACTTTTCAT-TCCTCAAATTTCACTGT-TATTAT----TTATTTTATTTTA-TAC-TCCCAGTAGAAATAAATCAACC------AATAAAA-AAATTAGTG-TGGATATG-TATTGT---GTCA--TTTAAAtaaatgtctgttaatcctgaaatatgttgaaaatgtcgttaaaaccctttcagaaatattaatacgtggacatgggtgaaatcgatttcagcattgccgtgtggggccttaaggta
gi|6 : ttttagccggacttttgaccaataacgtaaccctggttatgtagccgtgatcatggttctCAGTGTTGATCACCGCCAAAATGATACTACGCGACAAGGCCTACTTTTTATATTTTCGAATTTCATTTT-T-TCATGACGGTATTTTA---TA-TAT-GC---------
gi|9 : ttttagccggccttattccaaaggtttatcttgcttatgtcggcgtggtcaaagtttgTCACCCCTAAAACTATCATACACGACAACGGCTATTTTTGAT-TCACCAAATT--AATTT-T-CCAT----GTATTTCG---TA-CAT-GCA--------ACGAATCAAAC------AATGAAA-AAATCATTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAAATGAGAAAGTGTTTTGCTTCTCCTGAAATATTTTCAAAAATGCACTCGTTTTTTGCACTAAACAGATGACATGTGAACACGAGTATAATCAATTTGAACATTGCCGTGTGGACCTTAAATTA
Unaligned ( gi|8 ): ACTTTGTCATTAAATTTGTCAGTTATTGGCAGAGATCGTAGTTCCACTTGGATTCACTTGTGATCTTTCTTTATCTGGATGTCATCAATTTGTTGAAAATGGCATTAAACCC
Unaligned ( gi|12 ): TTACTTGTCTTATTAGGACAATGATTCTAGTCAATTCAATCTGAGGTCCACCAGGACAATTTGTTCCATGATTACAATCCTGTTACATGTTGAAAATG
Unaligned ( gi|17 ): TATGTGAACACGAGTACAGTCAATTTCAACAGTGCCTCGTGCTCTTTAATTA