lowQualScore : 11111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 1 11 66666666 1 33333 222 1 11 2222 11111111111111111111111111111 1 333333333333333333333333333333 1 11111 22222222222222222222222 222222222222 11111 2222 333333333333 222222 222222222 111 11111111111 11 11111111 111111 444444444444444444 11 333 55555555555555555 1 333333333333333 22 5555555555555555 111 1 11 111 1 2222222222222222222222222222222222222222222 66666666666666 44444444444444 4 1
lowQualScore : 5 99 88888888 5 77777 7 1 6 0 333 0 0 2 11 0000 55555555555555555555555555555 5 3 00 4 1 99999 333333333333333333333333333333 1 44444 55 4 66666666666666666666666 7777 555555555555 3 666 0 22222 3 3 3 0000 4 333333333333 222222 1 0 777 333333333 555 66 2 44444444444 888 5 888 2 00 888 6 66666666 999999 88 555555555555555555 0 4 0 77 000 11111111111111111 0 555555555555555 7 33 6 0 2222222222222222 1 99 111 5 0 11 000 3 1 8888888888888888888888888888888888888888888 6 11 11111111111111 33333333333333 0 7
lowQualScore : . .. ........ . ..... . . . . ... . . . .. .... ............................. . . .. . . ..... .............................. . ..... .. . ....................... .... ............ . ... . ..... . . . .... . ............ ...... . . ... ......... ... .. . ........... ... . ... . .. ... . ........ ...... .. .................. . . . .. ... ................. . ............... . .. . . ................ . .. ... . . .. ... . . ........................................... . .. .............. .............. . .
lowQualScore : 5 55 55555555 0 33333 3 0 0 7 333 7 0 0 22 0000 33333333333333333333333333333 7 0 66 4 2 11111 999999999999999999999999999999 1 11111 00 0 11111111111111111111111 0000 666666666666 5 444 5 77777 6 6 6 0000 4 222222222222 000000 4 8 666 666666666 444 44 2 00000000000 666 0 888 9 11 888 1 66666666 777777 22 222222222222222222 2 2 2 00 222 11111111111111111 5 333333333333333 3 33 7 8 1111111111111111 0 22 111 0 8 22 888 2 0 6666666666666666666666666666666666666666666 7 77 55555555555555 00000000000000 0 0
consensus : NTTCAAGCAAANCATATCTAGATCACCTGAAC----TTATTTTGGTCGTCCTGTAT---CTAT-TATCCGTC---CATAC-CAC----ATATG---T---ATGT--TGT-GCACTNTAGCAC-CTGCATTTTTC-----ATT--GTA---TCTTCACCAAAC------T---TACACAG-----TAG--TT-ATA----T--A--------ACT----ATA---ATATCTCG-GATAAGTT-CTTGA---ACTG-----ATCA-A-A-TC--NAATTAT-CA-A-TGCCGG---AGTTAT----GACCCTTGAA--ACAT-------CAAA-TATTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TT---TCATTN-GA---TCGTCACCAAAC------T-TACACA-----NTAGTTGTATAC-GTGTAACTATAA----TATCTCGGATAAGTTGTTGAACTGGC-NAAGTCGG--A-TNAAC-AAGT-CCGGANTTATCGNATCTT--GA--TACGTAAAAA-TTGCATTATTTT--GA--CCATGTTN-GCACTCTA--GCACCCG-CATT-TTTCATTN-GATCNTCACCAAACTTACACAGTAGTTATATANCA-TAAC-AG--T--ATC-ATG----AAAAGTTT---TGAACTGGCTAAATCGGATNNTNTAAGTNCCAGAGTTATCACACTGGAACTACAAAAAAA-TGCACAATTT
Reference ( gi|3 ) : ATTCAAGCAAATCAT---T----CAGTTGAAT----TTATTTTGATCGCCCTGTGT---CCAT-TGTATGTC---CATA---------ATATG---T---ATGTC-CGT-GCACTCTAGTAC-CTGCATTTTTC-----ATT--GTG---TCTTCATCAAAC------T---TACAGAG-----TAG--TT-ATA----T--A--------ACT----ATA---ATATCTCG-GATAAGTT-TTTAA---ATTG-----ATCA-A-A-TC--TAATTAT-TA-A-TGCCGG---AGTTAT----GTCCCTTGAA--ACAT-------TAAA-TGTTGTACTATTTGACCTTGTGTGGACTCTA--GTACCCG-CATT-TT---TTATTT-GA---TTATCACCAAAC------T-TACACA-----TTAGTTATATAC-ATGTAATCATAA----TATCTCGGACAAGTCGTTGAACTGGT-AAAGTCGG--A-TAAAC-AAAT-TTGGAGTTATTGGATCTT--GA--TACATAAAAAATTGCATTATTT---GA--CCATGTTA-GCACTCTA--GCACCTG-CATT-TTTGATTT-GATCCTCACCGAACTTACACAGTAGTTATGTAATAGTAAC-A---T--ATC-ATA----ACAAGTTTA--TGACCTGGTCAAATCAGACAATCGA--TGCAGGAATTATGGCCCTTCAGTTGTAAAAAAAGTGCACTATTTC
gi|9 : TTCA-GCAA-TTAT---TAGATCACCTGAGC----T-ATTCTTACCATTCTATGCGAGCCATCTGTCCGTC---CATG---------TTATT---TTGAATG----AT-GCACTCTTGCAC-CTGCATTTTTC-----ATT--GGA---TCT
gi|1 : atattcagcAAACAAAACATATCT----CACTTGAACAAAGTTATTTTGGTCGTCCTGTAT---CTCT-TATCCGT----CATACGCACTCACATATGAGAT----TGT---GT-GCATTATAGCAC-CTTCATTTGTC-----ATTCAATA---TTTACAT--ATC------G---TGCATGG-----TA----T-ATA----T--A--------TAT----ATATGTATAT------ATAA--T-TTTAG---ATTGACTTTATCATACA-TC--T--TTAT-CA-A----------AGTTAT----GACGCTTGA
gi|2 : ctgacaaaaaaaaaacacattttcattgcactattggtgtgtagcaattagagctttgtaagttactttgttgaaatttttgttatcttattaattttcctgttacagcaaaaaactaaccaaatttatttcagaaaacaaacgtctaagcatggaaggtgaaatagaagcgctaattgcagtcatttcattatcatttcaaatgttataacggaataaataagataaaaaaaaaaaaatttcagaaaagaaaacctcttaggatgaaagaggcgttcacgaaggatcattctgaaaaaaaggtatatctatttgaatgttttatgattctgatatttgtgaacactgttattcactggatttcgttatgtgtacaaattatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactataagagatgtgctgaataattatcttgaaaagaatttattttggatgtattattcatttttaaaagcaatcaatatgattatttggatggttatgtttaatttgttctattgattttcaaatgcatccgtataacatttgtatgagttttacatgttttacaaggaatcaagatttataataacggaaactttgaattgctgaattaggtatcttatgaagttgtgactattactttcagaaaaatagaagcaatgggcgaccatacgcaacagtcgtaacagatgaaacaattaagtaagtattcatttataacatttttaattttacatcagttatcatttaaaaaattaaaaataaattgctatgacggtcactctgttgttatttgttaatgtttatcttatccttattaatgtatgttagaatgcgctatcatttcgaaaaAAG----TTATTTTGGTCGTCCTGTAT---CTAT-TATCCGTCATACACACTCAC----ATATG-------AGGTTGTGT-GCATTATAGCGC-CTTAATTTGTC-----ATT--
gi|7 : ctaacaaaaaacaaccttttcattgcaatgagatcattattggtgtgtagcaattagaactttgtaagttactttgttgaaattgtctattatcttcttaattttcctgttacagcataaaataaccgaatttatttcagaaaacaaacgtctaagcatggaaggtgaaagagaagtgtcaattgcagtaagttcattatcatttaaaatgttataacggaatgaataagataaaacaataatatatttcaaaaaaagcaaaacctctaaggattgaagaggcggtcaccaaggatcattctgaaaaaacggtatatctatttgaatgtcttatgattctgatatttgtaaacactgttattcaatggatttcgttatgtgtacaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactaaacgagatgtgctgaaaaatcatcttgaataggatttattgcagatgtatttttcatttttaaaagcaatcataaatgattatttagatggttatgtttaatttgttctattgattttcaaatgcatccgtataatatttgtaagagttttacatgtttaacaaagtttcaatatttataatgaaggaaactttgaattgttgaattaggtatcttatgaagttgtaattattactttcagaaaaatagaagcaatgggcgacaacacgcaacagtcgtatcagatgaaacaattgaagtaagtattcatttataacatttttaatttttacatcaataatcatttaaaatgttaaattaaactgcatgcgtgtttaatgtatgtgtgaatgctctttcatttcggaaaagaagacatatctcacctgaaca-TATATATC---CAT-----------TATG-------ATGCC-TGTAGTATTGCA-TCC-CT--ATTTTTG-----ATT--GAA---TCCACACCTGAT------T---GACAAAG-----TAGTTTT-ATACCATT--A--------ACTATAAATA---ATATTTCA-AA-AAATTACTTGA---CCTG-----GTTA-A-A-TC--caatatatataatcttagaatgaccttatcaaacatctttattaaagttatgacgcttg
gi|11 : tgccacaATG---T---TTGT---GT-GCACTTGAACAC-TCGCATTTTCC-----TTT--ATG---TTTCCACCAAACAGAAAATGTACACAGAGGT---TAT--TT-AGA----TGCA--------ATT----ATA---ATATCTCC-GATACATT-GTCCA---GCTG-----ACCA-A-A-aga
gi|14 : GT-GCACTCTAGTAC-C--CATTTTTT-----AAT--GGA---CCATGATCAAAG------G---TACATAT-----TAG--T
gi|8 : ttgaatcataagatcgtaaacattttattttaccatttT-GCACTCTAGCCC-TCGCATTTT--------------------------AAAC------T---TGCAAAG-----TAG--T---TA----T--A--------ATT----ACA---GTATCAAT-GA-AACGT-ATTGA---ACTG-----ACTT-A-A-TC--AAATATT-TT-A-TGTCAG---AGTTATATAAATACCTTGAA--TTGT-------TAAA-
gi|5 : TAATACTCT--ATTTGAC-----ACT--GTGCAGTTTTCAT-----------T---TTCATAG-----TAG--TT-ATA----T--ATTTAAACAACC----ACA---TTATCTCAAGACAAGTT-TTTGCCCCATTGG----AT-----A-TT--T---TAT-TA-----CCG----AGTCAT----GACCTT--AA--ATCT-------TCAA-TGATGTATTGTTTGGCCTTGTGAGCACTC
gi|16 : tC-CTACATCTTTC-----ATT---TGA--TTTTCACCAAGC------T---TACACAT-----TAG--TT-ATA----T--A--------CCT----ATA---ACA
gi|4 : accctCATTTTTCAACCGATT--GTA---TC-----CAAAC------T---TGCACAGATGCTTAA--TTGGTA----C--G--------G------ATA---ATATCTTG-AACAAGTT-CTGAA---ATGG-----GTCA-A-A--C--CAACTA
gi|6 : aatatctcggagttcttaaatggtttaaatcaacctaaggctagttgagtaatgtcctttttaacaccaaactattgactttttgatcttgtaggccaATTTTTC-----ATT--AGA---CATTTATCAA-T------T---TCCACAG-----TAG--TT-GAA----T--A--------ACC----AGG---CTGCCTTG-GATAAGTT-GTTGG---ACTG-----GCCA-A-G-TC--GGATTATATA-AGTCCCAG---AATTAT----CACACTGGAACTACA---------AAA-AAATGCACAATTTaat
gi|10 : TTACCAAAC------G---TACATAG-----TAG--TT-ATA----A--A--------GCT----TTA---TTATCTCA-AATA-----CCTGA---ACTA-----ATCA-A-A-TC---GATTAC-CATA-TGTCAA---CGTTA-----------TGAA--TCAT-------CAAA-TATTTTCCTATTTTACTTTCTGTtaaaaccatg
gi|18 : cAAAC------C---TACACAG-----TAG--TT-ATA----T--C--------GCC----TTG---GTATCTC---------------A---ACTG-----ATCA-A-A-TC--GAATTAT-CA-
gi|4 : A---ATATCTCG-GA---GTT-CTTAA---ATGG-----TTTA-A-A-TC---AACC---TA-A-GGCTAGTTGAGTAAT----GTCCTTTTTA--ACAC-------CAAACTATTG-ACTTTTTGATCTTGTA-GG------------CCA-CATT-TT---TCAACC-GA---TTGTATCCAAAC------T-TGCACAGATGCTTAATTG-GTAC-G-G-----ATAA----TATCTTGAACAAGTT-CTGAAATGG-----GTCAA--A-CCAACTAAAT-ta
gi|12 : -TTTGA---ACTT-----ACCA-A-AGTCGGTAATTAT-CA---TA--GG---ATTTAT----TGCTCTTGAA--ACATA------CAAA-T-TTGCACTGTTTGAACTTTTGTGCTCTCTA--AAACCTGCCATTATG---TAATTT-GA---CTGT
gi|15 : --TGATTAT-CA-A-TGGCGG---AATTAT----GACCTTCGAA--ACAC-------CAAA-ATTTGTGTTAATTGACCTTGAGCGTAATTAA--GCACACG-C
gi|14 : TTGAA--TCATAAGATCGTAAA-CATT---TTATTTTACCATTTGTGCACTCTA--GTACC---CATT-TT---TTAATG-GA---CCATGATCAAAG------G-TACATA-----TTAGT
gi|17 : GATCTTGTGTCCACTTTATGGTACCAG-TATC-TT---TTATTTCGA---TCGTTACCAAGC------T-TACAC
gi|11 : TTGTGTGCACTTGA--ACACTCG-CATT-TTCCTTTAT----G---TTTCCACCAAACAGAAAATGTACACA-----GAGGTTATTTAG-ATGCAATTATAA----TATCTCCGATACATTGTCCAGCTG
gi|7 : atgt--GCATCCC-TATT-TT---TGATTG-AA---TCCACACCTGAT------T-GACAAA-----GTAGTTTTATACCAT-TAACTATAAATAATATTTCAAAAAATTACTTGACCTGGT-TAAATCAG--A-accaaa
gi|16 : tgccacatatatatccattatgatgcctgtagtattCCTA-CATC-TT---TCATTT-GA---TTTTCACCAAGC------T-TACACA-----TTAGTTATATAC-CTATAA
gi|6 : accctATT-TT---TCATTA-GACATTTATCA----AT------T-TCCACA-----GTAGTTGAATA-------ACCAGGC----TGCCTTGGATAAGTTGTTGGACTGGC-CAAGTCGG--ATTATAT-AAGTCCCAGAATTATCACA-CTG--GAACTACA-AAAAAA-TGCACAATTTTAAAA--CCATGca
gi|12 : TTGAACTTACCAAAGTCGGTAA-TTATC-A----TAGGATTTATT-GCTCTT--GA--AACATACAAATTTGCACTGTTT---GA--AC-TTTTGTGCTCTCTA--AAACCTGCCATTATGTAATTT-GA
gi|14 : tTTGAATCATAAGA--T-CGTAAACA-TT---TTATTT---TA--CCATTTGT-GCACTCTA--GTACC---CATT-TTTTAATG-GACCATGATCAAAGGTACATATTAGTctgt
gi|7 : CATTAT-----GATGCC-TGT-A-GTATT-----GCATCCC-TATT-TTTGATTG-AATCCACACCTGATTGACAAAGTAGTTTTATACCATTAACTA---TAAATA-ATATTTCAAAAAATTACTTGACCTGGTTAAATCAGA
gi|9 : tgccacatatatatcTTATTTT--GA----ATGAT--GCACTCTT--GCACCTG-CATT-TTTCATTG-GATC
gi|8 : atattcagcttcagcaattattagatcacctgagctattcttaccattctatgcgagccatctgtccgtccatg-GCACTCTA--GCCCTCG-CATT-TT-----------------AAACTTGCAAAGTAGTTA--TAAT--T-AC-AG--T--ATCAATG----AAACGTAT---TGAACTGACTTAATCAAATATTTTA--TGTCAGAGTTATt
gi|17 : tCACTTTATGGTACCAG-TATC-TTTTATTTCGATCGTTACCAAGCTTACACataaataccttgaattgttaaa
gi|16 : gatcttgtgtcCCTA-CATC-TTTCATTT-GATTTTCACCAAGCTTACACATTAGTTATATACCTATAAC-A---
gi|6 : accctATT-TTTCATTA-GACATTTATC-AATTTCCACAGTAGTTG---AATA--ACC-AGGCT--GCC-TTGG---ATAAGTTGT--TGGACTGGCCAAGTCGGATTATATAAGTCCCAGAATTATCACACTGGAACTACAAAAAAA-TGCACAATTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CATTCAGGTTGTGTGCATGCAAGCACAATCATTTGTTATTTAATATTTACATAACATGTATAGTTTATTAAACAAGTTAGATTGGCCTTATCAATTTTTTATC
Unaligned ( gi|19 ): TTTTTTAACTTTTTACTTTCATATACAAAATTCTTAATACCATATCAGATAATGAGGG
Alignments
lowQualScore : 44444444 4444 111 1 2222 333333 333333333333 111 222222 1 333333333333333333333 1111 333333333333333 1111 22222222222 111 1111 22222222 333333 111 22222 11 11 22 1 2 222 1 1 444444444444444444444 11 1 2222 33 2
lowQualScore : 6 1 88888888 2222 3 777 0 0000 111111 0 888888888888 444 0 1 333333 0 0 1 1 6 99 333333333333333333333 0000 666666666666666 4 5 5 5 7777 3 33333333333 4 5 6 000 1 0 3 33 2222 6 8 1 99 2 0 99999999 444444 222 88 33333 1 6 77 1 6 22 1 6 1 4 77 5 0 3 000 5 5 2 44 99 5 3 4444 1 1 0 444444444444444444444 44 0 4444 3 2 22 1 00 1 0 2 3 55 0 4
lowQualScore : . . ........ .... . ... . .... ...... . ............ ... . . ...... . . . . . .. ..................... .... ............... . . . . .... . ........... . . . ... . . . .. .... . . . .. . . ........ ...... ... .. ..... . . .. . . .. . . . . .. . . . ... . . . .. .. . . .... . . . ..................... .. . .... . . .. . .. . . . . .. . .
lowQualScore : 7 0 22222222 5555 2 555 0 0000 222222 8 222222222222 000 8 0 000000 6 0 4 5 3 22 333333333333333333333 6666 333333333333333 5 0 0 0 8888 2 44444444444 0 3 7 555 7 3 0 88 3333 7 0 4 00 8 2 88888888 333333 777 00 33333 0 7 77 0 0 00 0 0 0 0 55 5 0 0 555 5 0 5 00 66 2 3 7777 7 0 8 888888888888888888888 00 0 8888 0 0 00 0 33 0 7 5 0 00 0 0
consensus : NTTCAAGCAAAACATATCT---TCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACTTACANAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCG---GAGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATTT-GATTGTCACCAAAC------T-TACACA-----TTAGTTATNTACGTGCAATCATAATATCTCGGACAAGTTGTCGAACTGGC-AAGTCGGACNAACAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTNGATCCTCACCAAACTTACACAGTAGTTATATANC-A-T--------AACAG--TATCN-TGAA-AAGTTG-T-TGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
Reference ( family-4038 ) : NTTCAAGCAAANCATATCTAGATCACCTGAAC----TTATTTTGGTCGTCCTGT---ATCTAT-TATCCGTC---CATAC-----CACATATG-TAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGTATCTTCACCAAACTTACACAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCN--AATTATCA-ATGCCG---GAGTTATGACCCTTGAAACAT-CAAA-TATTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATTN-GATCGTCACCAAAC------T-TACACA-----NTAGTTGTATACGTGTAACTATAATATCTCGGATAAGTTGTTGAACTGGCNAAGTCGGATNAACAAGTCCGGANTTATCGNATCTT--GATACGT-AAAAATTGCATTATTTTGACCATGTTNGCACTCTAGCACCCGCATTTTTCATTNGATCNTCACCAAACTTACACAGTAGTTATATANC-A-T--------AACAG--TATCA-TGAA-AAGTT--T-TGAACTGGCTAAATCGGATNNTNTAAGTNCCAGAGTTATCACACTGGAACTACAAAAAAA-TGCACAATTT
gi|1 : AAACAAAACATATCT----CACTTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTCT-TATCCGT----CATACGCACTCACATATGAGAT--TG--T-GTG---CATTATAGCACCTTCAT------TTGTCATTCAATATTTACATATCGTGCATGGTA----TATA----TA--------TAT----ATATGTATAT------ATAATTT-TAGATTGACTTTATCATACA-TCT----TTATCA-A---------AGTTATGACGCTTGA
gi|10 : ctgacaaaaaaaaaacacattttcattgcactattggtgtgtagcaattagagctttgtaagttactttgttgaaatttttgttatcttattaattttcctgttacagcaaaaaactaaccaaatttatttcagaaaacaaacgtctaagcatggaaggtgaaatagaagcgctaattgcagtcatttcattatcatttcaaatgttataacggaataaataagataaaaaaaaaaaaatttcagaaaagaaaacctcttaggatgaaagaggcgttcacgaaggatcattctgaaaaaaaggtatatctatttgaatgttttatgattctgatatttgtgaacactgttattcactggatttcgttatgtgtacaaattatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactataagagatgtgctgaataattatcttgaaaagaatttattttggatgtattattcatttttaaaagcaatcaatatgattatttggatggttatgtttaatttgttctattgattttcaaatgcatccgtataacatttgtatgagttttacatgttttacaaggaatcaagatttataataacggaaactttgaattgctgaattaggtatcttatgaagttgtgactattactttcagaaaaatagaagcaatgggcgaccatacgcaacagtcgtaacagatgaaacaattaagtaagtattcatttataacatttttaattttacatcagttatcatttaaaaaattaaaaataaattgctatgacggtcactctgttgttatttgttaatgtttatcttatccttattaatgtatgttagaatgcgctatcatttcgaaaaTTACCAAACGTACATAGTAG--TTATA----AA--------GCT----TTA---TTATCTCA-AATA-----C---CTGAACTAATCA-A-A-TCG---ATTACCATATGTCA---ACGTTA-------TGAATCAT-CAAA-TATTTTCCTATTTTACTTTCTGT
gi|11 : cTTGTGTGCACTTGA--ACACTCG-CATT-TTCCTTTA-TGTTTCCACCAAACAGAAAATGTACACA-----GAGGTTATTTAGATGCAATTATAATATCTCCGATACATTGTCCAGCTGACCAA
gi|12 : atgt---TTGAACTTACCA-A-AGTCGGTAATTATCA--TA--G---GATTTATTGCTCTTGAAACATACAAA-T-TTGCACTGTTTGAACTTTTGTGCTCTCTA--AAACCTGCCATTATGTAATTT-GACTGTa
gi|14 : tTTGAATCATAAGAT-CGT-AAACATT---TTATTTT-ACCATTTGTGCACTCTAGTACC--CATTTTTTAATGGACCATGATCAAAGGTACATATTAGT
gi|15 : ATTATCA-ATGGCG---GAATTATGACCTTCGAAACAC-CAAA-ATTTGTGTTAATTGACCTTGAGCGTAATTAA--GCACACG-C
gi|16 : tgCCTACATCTTTCATTTGATTTTCACCAAGCTTACACATTAGTTATATACCTA-T--------AACA
gi|17 : accctGATCTTGTGTCCACTTTATGGTACCAG-TATC-TTTTATTTCGATCGTTACCAAGC------T-TACAC
gi|18 : AAACCTACACAGTAG--TTATA----TC--------GCC----TTG---GTATCTC------------------AACTGATCA-A-A-TCG--AATTATCA-
gi|2 : AAG-AAGACATATCT----CACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTAT-TATCCGTCATACACACT----CACATATG--AG--GTTGT-GTG---CATTATAGCGCCTTAAT------TTGTCATTta
gi|3 : ctaacaaaaaacaaccttttcattgcaatgagatcattattggtgtgtagcaattagaactttgtaagttactttgttgaaattgtctattatcttcttaattttcctgttacagcataaaataaccgaatttatttcagaaaacaaacgtctaagcatggaaggtgaaagagaagtgtcaattgcagtaagttcattatcatttaaaatgttataacggaatgaataagataaaacaataatatatttcaaaaaaagcaaaacctctaaggattgaagaggcggtcaccaaggatcattctgaaaaaacggtatatctatttgaatgtcttatgattctgatatttgtaaacactgttattcaatggatttcgttatgtgtacaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactaaacgagatgtgctgaaaaatcatcttgaataggatttattgcagatgtatttttcatttttaaaagcaatcataaatgattatttagatggttatgtttaatttgttctattgattttcaaatgcatccgtataatatttgtaagagttttacatgtttaacaaagtttcaatatttataatgaaggaaactttgaattgttgaattaggtatcttatgaagttgtaattattactttcagaaaaatagaagcaatgggcgacaacacgcaacagtcgtatcagatgaaacaattgaagtaagtattcatttataacatttttaatttttacatcaataatcatttaaaatgttaaattaaactgcatgcgtgtttaatgtatgtgtgaatgctctttcatttcggaaTTCAAGCAAATCAT-------TCAGTTGAAT----TTATTTTGATCGCCCTGT---GTCCAT-TGTATGTC---CATA---------ATATG-TAT--GT--CCGTG---CACTCTAGTACCTGCAT------TTTTCATTGTGTCTTCATCAAACTTACAGAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-T---TTAAATTGATCA-A-A-TCT--AATTATTA-ATGCCG---GAGTTATGTCCCTTGAAACAT-TAAA-TGTTGTACTATTTGACCTTGTGTGGACTCTA--GTACCCG-CATT-TTTTATTT-GATTATCACCAAAC------T-TACACA-----TTAGTTATATACATGTAATCATAATATCTCGGACAAGTCGTTGAACTGGTAAAGTCGGATAAACAAATTTGGAGTTATTGGATCTT--GATACATAAAAAATTGCATTA-TTTGACCATGTTAGCACTCTAGCACCTGCATTTTTGATTTGATCCTCACCGAACTTACACAGTAGTTATGTAAT-AGT--------AACA---TATCA-TAAC-AAGTT--TATGACCTGGTCAAATCAGACAATCGA--TGCAGGAATTATGGCCCTTCAGTTGTAAAAAAAGTGCACTATTTcaatatatataatcttagaatgaccttatcaaacatctttattaaagttatgacgcttg
gi|4 : aA---ATATCTCG-GA---GTT-C---TTAAATGGTTTA-A-A-TCA--ACCT---A-AGGCTAGTTGAGTAATGTCCTTTTTAACAC-CAAACTATTG-ACTTTTTGATCTTGTAGG-------------CCA-CATT-TTTCAACC-GATTGTATCCAAAC------T-TGCACAGATGCTTAATTG-GTACG-G-----ATAATATCTTGAACAAGTT-CTGAAATGG----GTCAAACCAACc
gi|5 : ATTTTCATAGTAG--TTATA----TATTTAAACAACC----ACA---TTATCTCAAGACAAGTT-T---TTGCCCC-ATTG-G-A-T-----ATT-TTA-TTACCG----AGTCATGACC-TTAAATCTT-CAA--TGATGTATTGTTTGGCCTTGTGAGCACTCtaaat
gi|6 : ttaatactctatttgacactgtgcagttttcATTTTTCATTAGACATTTATCAA-TTTCCACAGTAGTTGAATAAC--------------CAGGCTGCCT-TGGATAAGTTG-T-TGGACTGGCCAAGTCGGATTATATAAGTCCCAGAATTATCACACTGGAACTACAAAAAAA-TGCACAATTT
gi|7 : TGC-----CACATATA-TATCCAT--T-ATGATGC-CTGTAGTAT-TGCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCATTA--------ACTATAAATA---ATATTTCA-AA-AAATTAC---TTGACCTGGTTA-A-A-TCA--GAtaaaaccatg
gi|7 : GCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACC-A-TTAACTATAAATAA--TATTT-CAAA-AAATTACT-TGACCTGGTTAAATCAGA
gi|8 : tgccacatatatatccattatgatgcctgtagtattGCACTCTAGCCCTCGCATTTT----------------AAACTTGCAAAGTAGTTATA-----A-T--------TACAG--TATCAATGAA-ACGTA--T-TGAACTGACTTAATCAAATATTTTA--TGTCAGAGTTAT
gi|9 : tTAT-TAGATCACCTGAGC----T-ATTCTTACCATTCTATGCGAGCCATCTGTCCGTC---CATGT-----TATTT-TG-AAT--G-----ATG---CACTCTTGCACCTGCAT------TTTTCATTGGATCTataaataccttgaattgttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCAGGTTGTGTGCATGCAAGCACAATCATTTGTTATTTAATATTTACATAACATGTATAGTTTATTAAACAAGTTAGATTGGCCTTATCAATTTTTTATC
Unaligned ( gi|19 ): TTTTTTAACTTTTTACTTTCATATACAAAATTCTTAATACCATATCAGATAATGAGGG
Alignments
lowQualScore : 11111 2222 111 1 2222 333333 333333333333 111 111111 3333333333333 1111 1111 333333333333333 1111 22222222222 1111 222222 22222 11111 1 3333 2 11 1 11 222 1 1 5555555555555555555555 11 1 11 11 1
lowQualScore : 6 99999 4444 777 0 0000 111111 0 666666666666 444 0 1 77 999999 88 6 3 5 1 99 3333333333333 0 4444 0000 666666666666666 1 5 5 5 9999 33333333333 33 6 999 1 0 1 33 2222 5 6 666 1 333333 8 55555 44 88 22222 2 1111 1 0 1 88 5 66 000 5 5 1 22 99 44 1 3 99999 1 22 3 1 7777777777777777777777 11 0 3 44 1 1 88 0 2 1 22 5 1
lowQualScore : . ..... .... ... . .... ...... . ............ ... . . .. ...... .. . . . . .. ............. . .... .... ............... . . . . .... ........... .. . ... . . . .. .... . . ... . ...... . ..... .. .. ..... . .... . . . .. . .. ... . . . .. .. .. . . ..... . .. . . ...................... .. . . .. . . .. . . . .. . .
lowQualScore : 7 22222 0000 555 0 0000 222222 8 222222222222 000 8 0 77 222222 55 4 7 5 0 22 7777777777777 3 2222 6666 333333333333333 4 0 0 0 3333 44444444444 77 7 888 7 3 7 88 3333 7 7 888 0 000000 0 00000 22 00 77777 0 3333 0 0 0 55 5 55 555 5 0 0 00 00 66 0 8 22222 4 22 2 2 2222222222222222222222 00 0 2 22 0 0 33 7 5 0 00 0 0
consensus : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACC-TGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----T--------AACT----ATA---ATATCTC-GGATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTCGAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
Reference ( family-4038 ) : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACC-TGCAT------TTTTCATTGAATCTTCACCAAACTTACANAGTAG--TTATA----T--------AACT----ATA---ATATCTC-GGATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATNTACGTGCAATCATAATATCTCGGACAAGTTGTCGAACTGGC-AAGTCGGACNAAC-AAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTNGATCCTCACCAAACTTACACAGTAGTTATATANCA-T--------AACAG--TATC-NTGAA-AAGTTG-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
gi|1 : AAACAAAACATATCT-CACTTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTCT-TATCCGT----CATACGCACTCACATATGAGAT--TG--T-GTG---CATTATAGCACC-TTCAT------TTGTCATTCAATATTTACATATCGTGCATGGTA----TATA----T--------ATAT----ATATGTATAT------ATAATTT-TAGATTGACTTTATCATACA-TCT----TTATCA-A---------AGTTATGACGCTTGA
gi|10 : ctgacaaaaaaaaaacacattttcattgcactattggtgtgtagcaattagagctttgtaagttactttgttgaaatttttgttatcttattaattttcctgttacagcaaaaaactaaccaaatttatttcagaaaacaaacgtctaagcatggaaggtgaaatagaagcgctaattgcagtcatttcattatcatttcaaatgttataacggaataaataagataaaaaaaaaaaaatttcagaaaagaaaacctcttaggatgaaagaggcgttcacgaaggatcattctgaaaaaaaggtatatctatttgaatgttttatgattctgatatttgtgaacactgttattcactggatttcgttatgtgtacaaattatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactataagagatgtgctgaataattatcttgaaaagaatttattttggatgtattattcatttttaaaagcaatcaatatgattatttggatggttatgtttaatttgttctattgattttcaaatgcatccgtataacatttgtatgagttttacatgttttacaaggaatcaagatttataataacggaaactttgaattgctgaattaggtatcttatgaagttgtgactattactttcagaaaaatagaagcaatgggcgaccatacgcaacagtcgtaacagatgaaacaattaagtaagtattcatttataacatttttaattttacatcagttatcatttaaaaaattaaaaataaattgctatgacggtcactctgttgttatttgttaatgtttatcttatccttattaatgtatgttagaatgcgctatcatttcgaaaaTTACCAAACGTACATAGTAG--TTATA----A--------AGCT----TTA---TTATCTC-AAATA-----C---CTGAACTAATCA-A-A-TCG---ATTACCATATGTCAA---CGTTA-------TGAATCAT-CAAA-TATTTTCCTATTTTACTTTCTGT
gi|11 : cTTGTGTGCACTTGA--ACACTCG-CATT-TTCCTTTAT-G-TTTCCACCAAACAGAAAATGTACACA-----GAGGTTATTTAGATGCAATTATAATATCTCCGATACATTGTCCAGCTGAC-
gi|12 : atgt---TTGAACTTACCA-A-AGTCGGTAATTATCA--TA--GG---ATTTATTGCTCTTGAAACATACAAA-T-TTGCACTGTTTGAACTTTTGTGCTCTCTA--AAACCTGCCATTATGTAATT-T-GACTGTcaaa
gi|14 : tTTGAATCATAAGAT-CGTAAA-CATT---TTATTTT-ACCATTTGTGCACTCTAGTACC--CATTTTTTAATGGACCATGATCAAAGGTACATATTAGT
gi|15 : ATTATCA-ATGGCGG---AATTATGACCTTCGAAACAC-CAAA-ATTTGTGTTAATTGACCTTGAGCGTAATTAA--GCACACG-C
gi|16 : tgCCTA-CATC-TTTCATT-T-GATTTTCACCAAGC------T-TACACA-----TTAGTTATATAC
gi|17 : accctGATCTTGTGTCCACTTTATGGTACCAG-TATC-TTTTATT-TCGATCGTTACCAAGC------T-TACACctataaca
gi|18 : AAACCTACACAGTAG--TTATA----T--------CGCC----TTG---GTATCTC------------------AACTGATCA-A-A-TCG--AATTATCA-
gi|2 : AAG-AAGACATATCT-CACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTAT-TATCCGTCATACACACT----CACATATG--AG--GTTGT-GTG---CATTATAGCGCC-TTAAT------TTGTCATTCAATta
gi|3 : ctaacaaaaaacaaccttttcattgcaatgagatcattattggtgtgtagcaattagaactttgtaagttactttgttgaaattgtctattatcttcttaattttcctgttacagcataaaataaccgaatttatttcagaaaacaaacgtctaagcatggaaggtgaaagagaagtgtcaattgcagtaagttcattatcatttaaaatgttataacggaatgaataagataaaacaataatatatttcaaaaaaagcaaaacctctaaggattgaagaggcggtcaccaaggatcattctgaaaaaacggtatatctatttgaatgtcttatgattctgatatttgtaaacactgttattcaatggatttcgttatgtgtacaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactaaacgagatgtgctgaaaaatcatcttgaataggatttattgcagatgtatttttcatttttaaaagcaatcataaatgattatttagatggttatgtttaatttgttctattgattttcaaatgcatccgtataatatttgtaagagttttacatgtttaacaaagtttcaatatttataatgaaggaaactttgaattgttgaattaggtatcttatgaagttgtaattattactttcagaaaaatagaagcaatgggcgacaacacgcaacagtcgtatcagatgaaacaattgaagtaagtattcatttataacatttttaatttttacatcaataatcatttaaaatgttaaattaaactgcatgcgtgtttaatgtatgtgtgaatgctctttcatttcggaaTTCAAGCAAATCAT----TCAGTTGAAT----TTATTTTGATCGCCCTGT---GTCCAT-TGTATGTC---CATA---------ATATG-TAT--GT--CCGTG---CACTCTAGTACC-TGCAT------TTTTCATTGTGTCTTCATCAAACTTACAGAGTAG--TTATA----T--------AACT----ATA---ATATCTC-GGATAAGTT-T---TTAAATTGATCA-A-A-TCT--AATTATTA-ATGCCGG---AGTTATGTCCCTTGAAACAT-TAAA-TGTTGTACTATTTGACCTTGTGTGGACTCTA--GTACCCG-CATT-TTTTATT-T-GATTATCACCAAAC------T-TACACA-----TTAGTTATATACATGTAATCATAATATCTCGGACAAGTCGTTGAACTGGTAAAGTCGGATAAAC-AAATTTGGAGTTATTGGATCTT--GATACATAAAAAATTGCATTA-TTTGACCATGTTAGCACTCTAGCACCTGCATTTTTGATTTGATCCTCACCGAACTTACACAGTAGTTATGTAATAGT--------AACA---TATC-ATAAC-AAGTTT-ATGACCTGGTCAAATCAGACAATCGA--TGCAGGAATTATGGCCCTTCAGTTGTAAAAAAAGTGCACTATTTatatataatcttagaatgaccttatcaaacatctttattaaagttatgacgcttg
gi|4 : aA---ATATCTC-GGA---GTT-C---TTAAATGGTTTA-A-A-TCA--ACCTA----AGGCTAGTTGAGTAATGTCCTTTTTAACAC-CAAACTATTG-ACTTTTTGATCTTGTAGGC-------------CA-CATT-TTTCAAC-C-GATTGTATCCAAAC------T-TGCACAGATGCTTAATTG-GTACG-G-----ATAATATCTTGAACAAGTTCT-GAAATGG----GTCAAACCAACTAAATc
gi|5 : TTTGACACTGTGCAG------TTTTCATT-----TT-----------CATAGTAG--TTATA----TATTTAAACAACC----ACA---TTATCTCAAGACAAGTT-T---TTG-CCCCATTG-G-A-T-----ATT-TTA-TTACC-G---AGTCATGA-CCTTAAATCTT-C-AA-TGATGTATTGTTTGGCCTTGTGAGCACTC
gi|6 : ttaatactctaATTTTTCATTAGACATTTATCAA-TTTCCACAGTAGTTGAATAAC-------------CAGGCTGCC-TTGGATAAGTTG-TTGGACTGGCCAAGTCGGATTATATAAGTCCCAGAATTATCACACTGGAACTACAAAAAAA-TGCACAATTT
gi|7 : TGC-----CACATATA-TATCCAT--T-ATGATGC-CTGTAGTAT--TGCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCATT--------AACTATAAATA---ATATTTC-AAA-AAATTAC---TTGACCTGGTTA-A-A-TCtaaaaccatg
gi|7 : GCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCA-TTAACTATAAATAA--TATT-TCAAA-AAATTACTTGACCTGGTTAAATCAGAaga
gi|8 : tgccacatatatatccattatgatgcctgtagtattGCACTCTAGCCCTCGCATTTT----------------AAACTTGCAAAGTAGTTATA----A-T--------TACAG--TATCAATGAA-ACG-TA-TTGAACTGACTTAATCAAATATTTTA--TGTCAGAGTTAT
gi|9 : tTCACCTGAGC-----TATTCTTACCATTCTATGCGAGCCATCTGTCCGTC---CATGT-----TATTT-TG-AAT--G-----ATG---CACTCTTGCACC-TGCAT------TTTTCATTGGATCTataaataccttgaattgttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCAGGTTGTGTGCATGCAAGCACAATCATTTGTTATTTAATATTTACATAACATGTATAGTTTATTAAACAAGTTAGATTGGCCTTATCAATTTTTTATC
Unaligned ( gi|19 ): TTTTTTAACTTTTTACTTTCATATACAAAATTCTTAATACCATATCAGATAATGAGGG
Alignments
lowQualScore : 11111 2222 111 1 2222 333333 333333333333 111 222222 333333333333333333333 1111 333333333333333 1111 22222222222 1111 222222 22222 11111 1 1 3333 1 11 1 11 222 1 1 5555555555555555555555 11 1 11 11 1
lowQualScore : 6 99999 4444 777 0 0000 111111 0 666666666666 444 0 1 333333 0 1 1 1 99 333333333333333333333 0000 666666666666666 4 5 5 5 9999 33333333333 3 5 6 999 1 0 1 33 2222 5 6 666 1 333333 8 55555 44 88 22222 2 3 1111 1 5 1 88 5 66 000 5 5 1 22 99 44 1 3 88888 1 22 1 1 5555555555555555555555 11 0 3 11 1 1 88 0 2 1 22 5 1
lowQualScore : . ..... .... ... . .... ...... . ............ ... . . ...... . . . . .. ..................... .... ............... . . . . .... ........... . . . ... . . . .. .... . . ... . ...... . ..... .. .. ..... . . .... . . . .. . .. ... . . . .. .. .. . . ..... . .. . . ...................... .. . . .. . . .. . . . .. . .
lowQualScore : 7 22222 0000 555 0 0000 222222 8 222222222222 000 8 0 000000 6 4 0 0 22 333333333333333333333 6666 333333333333333 5 0 0 0 3333 44444444444 0 3 7 888 7 3 7 88 3333 7 7 888 0 000000 0 00000 55 00 77777 0 3 3333 0 5 0 55 5 55 555 5 0 0 00 00 66 0 2 88888 4 22 0 2 8888888888888888888888 00 0 2 22 0 0 33 7 5 0 00 0 0
consensus : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
Reference ( family-4038 ) : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
gi|1 : AAACAAAACATATCT-CACTTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTCT-TATCCGT----CATACGCACTCACATATGAGAT--TG--T-GTG---CATTATAGCACCTTCAT------TTGTCATTCAATATTTACATATCGTGCATGGTA----TATA----TA--------TAT----ATATGTATAT------ATAATTT-TAGATTGACTTTATCATACA-TCT----TTATCA-A---------AGTTATGACGCTTGA
gi|10 : ctgacaaaaaaaaaacacattttcattgcactattggtgtgtagcaattagagctttgtaagttactttgttgaaatttttgttatcttattaattttcctgttacagcaaaaaactaaccaaatttatttcagaaaacaaacgtctaagcatggaaggtgaaatagaagcgctaattgcagtcatttcattatcatttcaaatgttataacggaataaataagataaaaaaaaaaaaatttcagaaaagaaaacctcttaggatgaaagaggcgttcacgaaggatcattctgaaaaaaaggtatatctatttgaatgttttatgattctgatatttgtgaacactgttattcactggatttcgttatgtgtacaaattatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactataagagatgtgctgaataattatcttgaaaagaatttattttggatgtattattcatttttaaaagcaatcaatatgattatttggatggttatgtttaatttgttctattgattttcaaatgcatccgtataacatttgtatgagttttacatgttttacaaggaatcaagatttataataacggaaactttgaattgctgaattaggtatcttatgaagttgtgactattactttcagaaaaatagaagcaatgggcgaccatacgcaacagtcgtaacagatgaaacaattaagtaagtattcatttataacatttttaattttacatcagttatcatttaaaaaattaaaaataaattgctatgacggtcactctgttgttatttgttaatgtttatcttatccttattaatgtatgttagaatgcgctatcatttcgaaaaTTACCAAACGTACATAGTAG--TTATA----AA--------GCT----TTA---TTATCTCA-AATA-----C---CTGAACTAATCA-A-A-TCG---ATTACCATATGTCAA---CGTTA-------TGAATCAT-CAAA-TATTTTCCTATTTTACTTTCTGT
gi|11 : cTTGTGTGCACTTGA--ACACTCG-CATT-TTCCTTTAT-G-TTTCCACCAAACAGAAAATGTACACA-----GAGGTTATTTAGATGCAATTATAATATCTCCGATACATTGTC-CAGCTGAC-
gi|12 : atgt---TTGAACTTACCA-A-AGTCGGTAATTATCA--TA--GG---ATTTATTGCTCTTGAAACATACAAA-T-TTGCACTGTTTGAACTTTTGTGCTCTCTA--AAACCTGCCATTATGTAATT-T-GACTGTcaaa
gi|14 : tTTGAATCATAAGAT-CGTAAA-CATT---TTATTTT-ACCATTTGTGCACTCTAGTACC--CATTTTTTAATGGACCATGATCAAAGGTACATATTAGT
gi|15 : ATTATCA-ATGGCGG---AATTATGACCTTCGAAACAC-CAAA-ATTTGTGTTAATTGACCTTGAGCGTAATTAA--GCACACG-C
gi|16 : tgCCTA-CATC-TTTCATT-T-GATTTTCACCAAGC------T-TACACA-----TTAGTTATATAC
gi|17 : accctGATCTTGTGTCCACTTTATGGTACCAG-TATC-TTTTATT-TCGATCGTTACCAAGC------T-TACACctataaca
gi|18 : AAACCTACACAGTAG--TTATA----TC--------GCC----TTG---GTATCTC------------------AACTGATCA-A-A-TCG--AATTATCA-
gi|2 : AAG-AAGACATATCT-CACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTAT-TATCCGTCATACACACT----CACATATG--AG--GTTGT-GTG---CATTATAGCGCCTTAAT------TTGTCATTCAATta
gi|3 : ctaacaaaaaacaaccttttcattgcaatgagatcattattggtgtgtagcaattagaactttgtaagttactttgttgaaattgtctattatcttcttaattttcctgttacagcataaaataaccgaatttatttcagaaaacaaacgtctaagcatggaaggtgaaagagaagtgtcaattgcagtaagttcattatcatttaaaatgttataacggaatgaataagataaaacaataatatatttcaaaaaaagcaaaacctctaaggattgaagaggcggtcaccaaggatcattctgaaaaaacggtatatctatttgaatgtcttatgattctgatatttgtaaacactgttattcaatggatttcgttatgtgtacaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactaaacgagatgtgctgaaaaatcatcttgaataggatttattgcagatgtatttttcatttttaaaagcaatcataaatgattatttagatggttatgtttaatttgttctattgattttcaaatgcatccgtataatatttgtaagagttttacatgtttaacaaagtttcaatatttataatgaaggaaactttgaattgttgaattaggtatcttatgaagttgtaattattactttcagaaaaatagaagcaatgggcgacaacacgcaacagtcgtatcagatgaaacaattgaagtaagtattcatttataacatttttaatttttacatcaataatcatttaaaatgttaaattaaactgcatgcgtgtttaatgtatgtgtgaatgctctttcatttcggaaTTCAAGCAAATCAT----TCAGTTGAAT----TTATTTTGATCGCCCTGT---GTCCAT-TGTATGTC---CATA---------ATATG-TAT--GT--CCGTG---CACTCTAGTACCTGCAT------TTTTCATTGTGTCTTCATCAAACTTACAGAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-T---TTAAATTGATCA-A-A-TCT--AATTATTA-ATGCCGG---AGTTATGTCCCTTGAAACAT-TAAA-TGTTGTACTATTTGACCTTGTGTGGACTCTA--GTACCCG-CATT-TTTTATT-T-GATTATCACCAAAC------T-TACACA-----TTAGTTATATACATGTAATCATAATATCTCGGACAAGTCGTT-GAACTGGTAAAGTCGGATAAAC-AAATTTGGAGTTATTGGATCTT--GATACATAAAAAATTGCATTA-TTTGACCATGTTAGCACTCTAGCACCTGCATTTTTGATTTGATCCTCACCGAACTTACACAGTAGTTATGTAATAGT--------AACA---TATC-ATAAC-AAGTTT-ATGACCTGGTCAAATCAGACAATCGA--TGCAGGAATTATGGCCCTTCAGTTGTAAAAAAAGTGCACTATTTatatataatcttagaatgaccttatcaaacatctttattaaagttatgacgcttg
gi|4 : aA---ATATCTCG-GA---GTT-C---TTAAATGGTTTA-A-A-TCA--ACCTA----AGGCTAGTTGAGTAATGTCCTTTTTAACAC-CAAACTATTG-ACTTTTTGATCTTGTAGGC-------------CA-CATT-TTTCAAC-C-GATTGTATCCAAAC------T-TGCACAGATGCTTAATTG-GTACG-G-----ATAATATCTTGAACAAGT--TCTGAAATGG----GTCAAACCAACTAAATc
gi|5 : CATAGTAG--TTATA----TATTTAAACAACC----ACA---TTATCTCAAGACAAGTT-T---TTGCCCC-ATTG-G-A-T-----ATT-TTA-TTACCG----AGTCATGACC-TTAAATCTT-CAA--TGATGTATTGTTTGGCCTTGTGAGCACTC
gi|6 : ttaatactctatttgacactgtgcagttttcattttATTTTTCATTAGACATTTATCAA-TTTCCACAGTAGTTGAATAAC-------------CAGGCTGCC-TTGGATAAGTTG-TTGGACTGGCCAAGTCGGATTATATAAGTCCCAGAATTATCACACTGGAACTACAAAAAAA-TGCACAATTT
gi|7 : TGC-----CACATATA-TATCCAT--T-ATGATGC-CTGTAGTAT-TGCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCATTA--------ACTATAAATA---ATATTTCA-AA-AAATTAC---TTGACCTGGTTA-A-A-TCtaaaaccatg
gi|7 : GCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCA-TTAACTATAAATAA--TATT-TCAAA-AAATTACTTGACCTGGTTAAATCAGAaga
gi|8 : tgccacatatatatccattatgatgcctgtagtattGCACTCTAGCCCTCGCATTTT----------------AAACTTGCAAAGTAGTTATA----A-T--------TACAG--TATCAATGAA-ACG-TA-TTGAACTGACTTAATCAAATATTTTA--TGTCAGAGTTAT
gi|9 : tTCACCTGAGC-----TATTCTTACCATTCTATGCGAGCCATCTGTCCGTC---CATGT-----TATTT-TG-AAT--G-----ATG---CACTCTTGCACCTGCAT------TTTTCATTGGATCTataaataccttgaattgttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCAGGTTGTGTGCATGCAAGCACAATCATTTGTTATTTAATATTTACATAACATGTATAGTTTATTAAACAAGTTAGATTGGCCTTATCAATTTTTTATC
Unaligned ( gi|19 ): TTTTTTAACTTTTTACTTTCATATACAAAATTCTTAATACCATATCAGATAATGAGGG
Alignments
lowQualScore : 11111 2222 111 1 2222 333333 333333333333 111 222222 333333333333333333333 1111 333333333333333 1111 22222222222 1111 222222 22222 11111 1 1 3333 1 11 1 11 222 1 1 5555555555555555555555 11 1 11 11 1
lowQualScore : 6 99999 4444 777 0 0000 111111 0 666666666666 444 0 1 333333 0 1 1 1 99 333333333333333333333 0000 666666666666666 4 5 5 5 9999 33333333333 3 5 6 999 1 0 1 33 2222 5 6 666 1 333333 8 55555 44 88 22222 2 3 1111 1 5 1 88 5 66 000 5 5 1 22 99 44 1 3 88888 1 22 1 1 5555555555555555555555 11 0 3 11 1 1 88 0 2 1 22 5 1
lowQualScore : . ..... .... ... . .... ...... . ............ ... . . ...... . . . . .. ..................... .... ............... . . . . .... ........... . . . ... . . . .. .... . . ... . ...... . ..... .. .. ..... . . .... . . . .. . .. ... . . . .. .. .. . . ..... . .. . . ...................... .. . . .. . . .. . . . .. . .
lowQualScore : 7 22222 0000 555 0 0000 222222 8 222222222222 000 8 0 000000 6 4 0 0 22 333333333333333333333 6666 333333333333333 5 0 0 0 3333 44444444444 0 3 7 888 7 3 7 88 3333 7 7 888 0 000000 0 00000 55 00 77777 0 3 3333 0 5 0 55 5 55 555 5 0 0 00 00 66 0 2 88888 4 22 0 2 8888888888888888888888 00 0 2 22 0 0 33 7 5 0 00 0 0
consensus : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
Reference ( family-4038 ) : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
gi|1 : AAACAAAACATATCT-CACTTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTCT-TATCCGT----CATACGCACTCACATATGAGAT--TG--T-GTG---CATTATAGCACCTTCAT------TTGTCATTCAATATTTACATATCGTGCATGGTA----TATA----TA--------TAT----ATATGTATAT------ATAATTT-TAGATTGACTTTATCATACA-TCT----TTATCA-A---------AGTTATGACGCTTGA
gi|10 : ctgacaaaaaaaaaacacattttcattgcactattggtgtgtagcaattagagctttgtaagttactttgttgaaatttttgttatcttattaattttcctgttacagcaaaaaactaaccaaatttatttcagaaaacaaacgtctaagcatggaaggtgaaatagaagcgctaattgcagtcatttcattatcatttcaaatgttataacggaataaataagataaaaaaaaaaaaatttcagaaaagaaaacctcttaggatgaaagaggcgttcacgaaggatcattctgaaaaaaaggtatatctatttgaatgttttatgattctgatatttgtgaacactgttattcactggatttcgttatgtgtacaaattatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactataagagatgtgctgaataattatcttgaaaagaatttattttggatgtattattcatttttaaaagcaatcaatatgattatttggatggttatgtttaatttgttctattgattttcaaatgcatccgtataacatttgtatgagttttacatgttttacaaggaatcaagatttataataacggaaactttgaattgctgaattaggtatcttatgaagttgtgactattactttcagaaaaatagaagcaatgggcgaccatacgcaacagtcgtaacagatgaaacaattaagtaagtattcatttataacatttttaattttacatcagttatcatttaaaaaattaaaaataaattgctatgacggtcactctgttgttatttgttaatgtttatcttatccttattaatgtatgttagaatgcgctatcatttcgaaaaTTACCAAACGTACATAGTAG--TTATA----AA--------GCT----TTA---TTATCTCA-AATA-----C---CTGAACTAATCA-A-A-TCG---ATTACCATATGTCAA---CGTTA-------TGAATCAT-CAAA-TATTTTCCTATTTTACTTTCTGT
gi|11 : cTTGTGTGCACTTGA--ACACTCG-CATT-TTCCTTTAT-G-TTTCCACCAAACAGAAAATGTACACA-----GAGGTTATTTAGATGCAATTATAATATCTCCGATACATTGTC-CAGCTGAC-
gi|12 : atgt---TTGAACTTACCA-A-AGTCGGTAATTATCA--TA--GG---ATTTATTGCTCTTGAAACATACAAA-T-TTGCACTGTTTGAACTTTTGTGCTCTCTA--AAACCTGCCATTATGTAATT-T-GACTGTcaaa
gi|14 : tTTGAATCATAAGAT-CGTAAA-CATT---TTATTTT-ACCATTTGTGCACTCTAGTACC--CATTTTTTAATGGACCATGATCAAAGGTACATATTAGT
gi|15 : ATTATCA-ATGGCGG---AATTATGACCTTCGAAACAC-CAAA-ATTTGTGTTAATTGACCTTGAGCGTAATTAA--GCACACG-C
gi|16 : tgCCTA-CATC-TTTCATT-T-GATTTTCACCAAGC------T-TACACA-----TTAGTTATATAC
gi|17 : accctGATCTTGTGTCCACTTTATGGTACCAG-TATC-TTTTATT-TCGATCGTTACCAAGC------T-TACACctataaca
gi|18 : AAACCTACACAGTAG--TTATA----TC--------GCC----TTG---GTATCTC------------------AACTGATCA-A-A-TCG--AATTATCA-
gi|2 : AAG-AAGACATATCT-CACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTAT-TATCCGTCATACACACT----CACATATG--AG--GTTGT-GTG---CATTATAGCGCCTTAAT------TTGTCATTCAATta
gi|3 : ctaacaaaaaacaaccttttcattgcaatgagatcattattggtgtgtagcaattagaactttgtaagttactttgttgaaattgtctattatcttcttaattttcctgttacagcataaaataaccgaatttatttcagaaaacaaacgtctaagcatggaaggtgaaagagaagtgtcaattgcagtaagttcattatcatttaaaatgttataacggaatgaataagataaaacaataatatatttcaaaaaaagcaaaacctctaaggattgaagaggcggtcaccaaggatcattctgaaaaaacggtatatctatttgaatgtcttatgattctgatatttgtaaacactgttattcaatggatttcgttatgtgtacaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactaaacgagatgtgctgaaaaatcatcttgaataggatttattgcagatgtatttttcatttttaaaagcaatcataaatgattatttagatggttatgtttaatttgttctattgattttcaaatgcatccgtataatatttgtaagagttttacatgtttaacaaagtttcaatatttataatgaaggaaactttgaattgttgaattaggtatcttatgaagttgtaattattactttcagaaaaatagaagcaatgggcgacaacacgcaacagtcgtatcagatgaaacaattgaagtaagtattcatttataacatttttaatttttacatcaataatcatttaaaatgttaaattaaactgcatgcgtgtttaatgtatgtgtgaatgctctttcatttcggaaTTCAAGCAAATCAT----TCAGTTGAAT----TTATTTTGATCGCCCTGT---GTCCAT-TGTATGTC---CATA---------ATATG-TAT--GT--CCGTG---CACTCTAGTACCTGCAT------TTTTCATTGTGTCTTCATCAAACTTACAGAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-T---TTAAATTGATCA-A-A-TCT--AATTATTA-ATGCCGG---AGTTATGTCCCTTGAAACAT-TAAA-TGTTGTACTATTTGACCTTGTGTGGACTCTA--GTACCCG-CATT-TTTTATT-T-GATTATCACCAAAC------T-TACACA-----TTAGTTATATACATGTAATCATAATATCTCGGACAAGTCGTT-GAACTGGTAAAGTCGGATAAAC-AAATTTGGAGTTATTGGATCTT--GATACATAAAAAATTGCATTA-TTTGACCATGTTAGCACTCTAGCACCTGCATTTTTGATTTGATCCTCACCGAACTTACACAGTAGTTATGTAATAGT--------AACA---TATC-ATAAC-AAGTTT-ATGACCTGGTCAAATCAGACAATCGA--TGCAGGAATTATGGCCCTTCAGTTGTAAAAAAAGTGCACTATTTatatataatcttagaatgaccttatcaaacatctttattaaagttatgacgcttg
gi|4 : aA---ATATCTCG-GA---GTT-C---TTAAATGGTTTA-A-A-TCA--ACCTA----AGGCTAGTTGAGTAATGTCCTTTTTAACAC-CAAACTATTG-ACTTTTTGATCTTGTAGGC-------------CA-CATT-TTTCAAC-C-GATTGTATCCAAAC------T-TGCACAGATGCTTAATTG-GTACG-G-----ATAATATCTTGAACAAGT--TCTGAAATGG----GTCAAACCAACTAAATc
gi|5 : CATAGTAG--TTATA----TATTTAAACAACC----ACA---TTATCTCAAGACAAGTT-T---TTGCCCC-ATTG-G-A-T-----ATT-TTA-TTACCG----AGTCATGACC-TTAAATCTT-CAA--TGATGTATTGTTTGGCCTTGTGAGCACTC
gi|6 : ttaatactctatttgacactgtgcagttttcattttATTTTTCATTAGACATTTATCAA-TTTCCACAGTAGTTGAATAAC-------------CAGGCTGCC-TTGGATAAGTTG-TTGGACTGGCCAAGTCGGATTATATAAGTCCCAGAATTATCACACTGGAACTACAAAAAAA-TGCACAATTT
gi|7 : TGC-----CACATATA-TATCCAT--T-ATGATGC-CTGTAGTAT-TGCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCATTA--------ACTATAAATA---ATATTTCA-AA-AAATTAC---TTGACCTGGTTA-A-A-TCtaaaaccatg
gi|7 : GCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCA-TTAACTATAAATAA--TATT-TCAAA-AAATTACTTGACCTGGTTAAATCAGAaga
gi|8 : tgccacatatatatccattatgatgcctgtagtattGCACTCTAGCCCTCGCATTTT----------------AAACTTGCAAAGTAGTTATA----A-T--------TACAG--TATCAATGAA-ACG-TA-TTGAACTGACTTAATCAAATATTTTA--TGTCAGAGTTAT
gi|9 : tTCACCTGAGC-----TATTCTTACCATTCTATGCGAGCCATCTGTCCGTC---CATGT-----TATTT-TG-AAT--G-----ATG---CACTCTTGCACCTGCAT------TTTTCATTGGATCTataaataccttgaattgttaaa
blockSeqs : C ATCT AAAG GCG C CATA CT TATCCATT ATG A CCCTAT A G T TT TATTTAAACAACC T AAGACAAGTTT A . . G GGTA AGGCTAGTTG G C A CTA C T CT TGGT C A TC G . . GATGC TA AT TAATC C T . C T T . A AA GCA . G G TA TG TG T T TCCTC C AC C G TACCATTAACTATAAATAA AA T T AC A A AG C A GG . A
blockSeqs : . T . . . C C AGGTTGT . C . A C C . CCATTAACTATAA G GGATAAGTTT T . . . GA TATGTCAA A T . AT T A TA AA . . T T . . . TA G . . . CC TC T A CATTT T AT C T TAACCAGGC T . T G C T .
blockSeqs : . . . C T TATGTCC . G . A T G . AAGCT A AAAAAATTAC G . . . TA ATGGCGG T C . TG T A TT GC . . T G . . . G CG TG T G TCCAC C AC A A ATTACAG T . . A A
blockSeqs : . AATG . C . T T T . TCGCC A GGAGTTC G . . . AA ATGCCGG T T . TG T A CT GT . . T A . . . . . . . T A
blockSeqs : A . TAACT T AAATAC G . . . G TTACCG A . . T . A . . . . C G
blockSeqs : A . G . . . . TAGG . . . .
blockSeqs : . . . .
blockSeqCons : C***** N*** AGAAAGTTC****** GA** ATGCCGG**** T** ******
originalCons : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------ACT----ATA---ATATCTCG-GATAAGTT-C---TTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
finalCons : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATG-NAT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------ACT----ATAN---TATCTCAGAAAGTTC------TTGAACTGATCA-A-A-TCGA--ATTATCAATGCCGG----AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATTT--GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCAGGTTGTGTGCATGCAAGCACAATCATTTGTTATTTAATATTTACATAACATGTATAGTTTATTAAACAAGTTAGATTGGCCTTATCAATTTTTTATC
Unaligned ( gi|19 ): TTTTTTAACTTTTTACTTTCATATACAAAATTCTTAATACCATATCAGATAATGAGGG
Alignments
lowQualScore : 11111 2222 111 1 3333333333333 333333333333 111 222222 555555555555555555555555 333333333333 1111 22222222222 1111 222222 22222 11111 1 1 3333 1 11 1 11 222 1 1 5555555555555555555555 11 1 11 11 1
lowQualScore : 6 99999 4444 777 0 3333333333333 0 666666666666 444 0 1 333333 0 1 1 1 99 000000000000000000000000 1 888888888888 4 5 5 5 9999 33333333333 3 5 6 999 1 0 1 33 2222 5 6 666 1 333333 8 55555 44 88 22222 2 3 1111 1 5 1 88 5 66 000 5 5 1 22 99 44 1 3 88888 1 22 1 1 5555555555555555555555 11 0 3 11 1 1 88 0 2 1 22 5 1
lowQualScore : . ..... .... ... . ............. . ............ ... . . ...... . . . . .. ........................ . ............ . . . . .... ........... . . . ... . . . .. .... . . ... . ...... . ..... .. .. ..... . . .... . . . .. . .. ... . . . .. .. .. . . ..... . .. . . ...................... .. . . .. . . .. . . . .. . .
lowQualScore : 7 22222 0000 555 0 2222222222222 8 222222222222 000 8 0 000000 6 4 0 0 22 888888888888888888888888 0 666666666666 5 0 0 0 3333 44444444444 0 3 7 888 7 3 7 88 3333 7 7 888 0 000000 0 00000 55 00 77777 0 3 3333 0 5 0 55 5 55 555 5 0 0 00 00 66 0 2 88888 4 22 0 2 8888888888888888888888 00 0 2 22 0 0 33 7 5 0 00 0 0
consensus : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATGN-AT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------AC---T----ATANTATCTCG-GA-AAGTT-CTTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
Reference ( family-4038 ) : NTTCAAGCAAAACATATCTTCACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCCAT-TGTCCGTC---CATAC-----CACATATGN-AT--GT--T-GTG---CACTNTAGCACCTGCAT------TTTTCATTGAATCTTCACCAAACNTACANAGTAG--TTATA----TA--------AC---T----ATANTATCTCA-GA-AAGTT-CTTGAACTGATCA-A-A-TCG--AATTATCA-ATGCCGG---AGTTATGNCCCTTGAAACAT-CAAA-TGTTGTACTATTTGACCTTGTGTGCACTCTA--GCACCCG-CATT-TTTCATT-T-GATTGTCACCAAAC------T-TACACA-----TTAGTTATATACGTGCAATCATAATATCTCGGACAAGTCGTC-GAACTGGC-AAGTCGGACNAACTAAATTTGGAGTTATTGGATCNTAAGATACGTAAAANATTGCATTATTTTGACCATNTNNGCACTCTAGCACCCGCATTTTTNATTGGACCCTCACCAAACTTACANAGTAGTTATATAACA-T--------AACAG--TATC-NTGAA-AAGTTA-TTGANCTGGCCAAATCAGATAATNTA--TGCCGGAATTATCGCNCTNNAGCTGCAAAAAAAGTGCACNATTT
gi|1 : AAACAAAACATATCT-CACTTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTCT-TATCCGTC----ATACGCACTCACATATGAGAT--TG--T-GTG---CATTATAGCACCTTCAT------TTGTCATTCAATATTTACATATCGTGCATGGTAT--ATATA----TATAT-----ATGTAT----ATATAATTTTA-GA--------TTGACTTTATCATACA-TCT----TTATCA-A---------AGTTATGACGCTTGA
gi|10 : ctgacaaaaaaaaaacacattttcattgcactattggtgtgtagcaattagagctttgtaagttactttgttgaaatttttgttatcttattaattttcctgttacagcaaaaaactaaccaaatttatttcagaaaacaaacgtctaagcatggaaggtgaaatagaagcgctaattgcagtcatttcattatcatttcaaatgttataacggaataaataagataaaaaaaaaaaaatttcagaaaagaaaacctcttaggatgaaagaggcgttcacgaaggatcattctgaaaaaaaggtatatctatttgaatgttttatgattctgatatttgtgaacactgttattcactggatttcgttatgtgtacaaattatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactataagagatgtgctgaataattatcttgaaaagaatttattttggatgtattattcatttttaaaagcaatcaatatgattatttggatggttatgtttaatttgttctattgattttcaaatgcatccgtataacatttgtatgagttttacatgttttacaaggaatcaagatttataataacggaaactttgaattgctgaattaggtatcttatgaagttgtgactattactttcagaaaaatagaagcaatgggcgaccatacgcaacagtcgtaacagatgaaacaattaagtaagtattcatttataacatttttaattttacatcagttatcatttaaaaaattaaaaataaattgctatgacggtcactctgttgttatttgttaatgtttatcttatccttattaatgtatgttagaatgcgctatcatttcgaaaaTTACCAAACGTACATAGTAG--TTATA----AA--------GC---T----TTATTATCTC-----AAATA-CCTGAACTAATCA-A-A-TCG---ATTACCATATGTCAA---CGTTA-------TGAATCAT-CAAA-TATTTTCCTATTTTACTTTCTGT
gi|11 : cTTGTGTGCACTTGA--ACACTCG-CATT-TTCCTTTAT-G-TTTCCACCAAACAGAAAATGTACACA-----GAGGTTATTTAGATGCAATTATAATATCTCCGATACATTGTC-CAGCTGAC-
gi|12 : atgtTTGAACTTACCA-A-AGTCGGTAATTATCA--TA--GG---ATTTATTGCTCTTGAAACATACAAA-T-TTGCACTGTTTGAACTTTTGTGCTCTCTA--AAACCTGCCATTATGTAATT-T-GACTGTcaaa
gi|14 : tTTGAATCATAAGAT-CGTAAA-CATT---TTATTTT-ACCATTTGTGCACTCTAGTACC--CATTTTTTAATGGACCATGATCAAAGGTACATATTAGT
gi|15 : ATTATCA-ATGGCGG---AATTATGACCTTCGAAACAC-CAAA-ATTTGTGTTAATTGACCTTGAGCGTAATTAA--GCACACG-C
gi|16 : tgCCTA-CATC-TTTCATT-T-GATTTTCACCAAGC------T-TACACA-----TTAGTTATATAC
gi|17 : accctGATCTTGTGTCCACTTTATGGTACCAG-TATC-TTTTATT-TCGATCGTTACCAAGC------T-TACACctataaca
gi|18 : AAACCTACACAGTAG--TTATA----TC--------GC---C----TTGGTATCTCA---------------ACTGATCA-A-A-TCG--AATTATCA-
gi|2 : AAG-AAGACATATCT-CACCTGAACAAAGTTATTTTGGTCGTCCTGT---ATCTAT-TATCCGTCATACACACT----CACATATG--AG--GTTGT-GTG---CATTATAGCGCCTTAAT------TTGTCATTCAATta
gi|3 : ctaacaaaaaacaaccttttcattgcaatgagatcattattggtgtgtagcaattagaactttgtaagttactttgttgaaattgtctattatcttcttaattttcctgttacagcataaaataaccgaatttatttcagaaaacaaacgtctaagcatggaaggtgaaagagaagtgtcaattgcagtaagttcattatcatttaaaatgttataacggaatgaataagataaaacaataatatatttcaaaaaaagcaaaacctctaaggattgaagaggcggtcaccaaggatcattctgaaaaaacggtatatctatttgaatgtcttatgattctgatatttgtaaacactgttattcaatggatttcgttatgtgtacaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcaagtatctgcaactaaacgagatgtgctgaaaaatcatcttgaataggatttattgcagatgtatttttcatttttaaaagcaatcataaatgattatttagatggttatgtttaatttgttctattgattttcaaatgcatccgtataatatttgtaagagttttacatgtttaacaaagtttcaatatttataatgaaggaaactttgaattgttgaattaggtatcttatgaagttgtaattattactttcagaaaaatagaagcaatgggcgacaacacgcaacagtcgtatcagatgaaacaattgaagtaagtattcatttataacatttttaatttttacatcaataatcatttaaaatgttaaattaaactgcatgcgtgtttaatgtatgtgtgaatgctctttcatttcggaaTTCAAGCAAATCAT----TCAGTTGAAT----TTATTTTGATCGCCCTGT---GTCCAT-TGTATGTC---CATA---------ATATGT-AT--GT--CCGTG---CACTCTAGTACCTGCAT------TTTTCATTGTGTCTTCATCAAACTTACAGAGTAG--TTATA----TA--------AC---T----ATAATATCTCG-GATAAGTT-TTTAAATTGATCA-A-A-TCT--AATTATTA-ATGCCGG---AGTTATGTCCCTTGAAACAT-TAAA-TGTTGTACTATTTGACCTTGTGTGGACTCTA--GTACCCG-CATT-TTTTATT-T-GATTATCACCAAAC------T-TACACA-----TTAGTTATATACATGTAATCATAATATCTCGGACAAGTCGTT-GAACTGGTAAAGTCGGATAAAC-AAATTTGGAGTTATTGGATCTT--GATACATAAAAAATTGCATTA-TTTGACCATGTTAGCACTCTAGCACCTGCATTTTTGATTTGATCCTCACCGAACTTACACAGTAGTTATGTAATAGT--------AACA---TATC-ATAAC-AAGTTT-ATGACCTGGTCAAATCAGACAATCGA--TGCAGGAATTATGGCCCTTCAGTTGTAAAAAAAGTGCACTATTTatatataatcttagaatgaccttatcaaacatctttattaaagttatgacgcttg
gi|4 : aAATATCTCG-GA---GTT-CTTAAATGGTTTA-A-A-TCA--ACCTA----AGGCTAGTTGAGTAATGTCCTTTTTAACAC-CAAACTATTG-ACTTTTTGATCTTGTAGGC-------------CA-CATT-TTTCAAC-C-GATTGTATCCAAAC------T-TGCACAGATGCTTAATTG-GTACG-G-----ATAATATCTTGAACAAGT--TCTGAAATGG----GTCAAACCAACTAAATc
gi|5 : CATAGTAG--TTATA----TATTTAAACAAC---C----ACATTATCTCAAGACAAGTT-TTTGCCCC-ATTG-G-A-T-----ATT-TTA-TTACCG----AGTCATGACC-TTAAATCTT-CAA--TGATGTATTGTTTGGCCTTGTGAGCACTC
gi|6 : ttaatactctatttgacactgtgcagttttcattttATTTTTCATTAGACATTTATCAA-TTTCCACAGTAGTTGAATAAC-------------CAGGCTGCC-TTGGATAAGTTG-TTGGACTGGCCAAGTCGGATTATATAAGTCCCAGAATTATCACACTGGAACTACAAAAAAA-TGCACAATTT
gi|7 : TGC-----CACATATAT-ATCCAT--T-ATGATGC-CTGTAGTAT-TGCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCATTA--------AC---TATAAATAATATTTCA-AA-AAATTACTTGACCTGGTTA-A-A-TCtaaaaccatg
gi|7 : GCATCCCTATTTTTGATTGAATCCACACCTGATTGACAAAGTAGTTTTATACCA-TTAACTATAAATAA--TATT-TCAAA-AAATTACTTGACCTGGTTAAATCAGAaga
gi|8 : tgccacatatatatccattatgatgcctgtagtattGCACTCTAGCCCTCGCATTTT----------------AAACTTGCAAAGTAGTTATA----A-T--------TACAG--TATCAATGAA-ACG-TA-TTGAACTGACTTAATCAAATATTTTA--TGTCAGAGTTAT
gi|9 : tTCACCTGAGC-----TATTCTTACCATTCTATGCGAGCCATCTGTCCGTC---CATGT-----TATTT-TGA-AT--G-----ATG---CACTCTTGCACCTGCAT------TTTTCATTGGATCTataaataccttgaattgttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCAGGTTGTGTGCATGCAAGCACAATCATTTGTTATTTAATATTTACATAACATGTATAGTTTATTAAACAAGTTAGATTGGCCTTATCAATTTTTTATC
Unaligned ( gi|19 ): TTTTTTAACTTTTTACTTTCATATACAAAATTCTTAATACCATATCAGATAATGAGGG