lowQualScore : 11 1 444444444444444 333333333 222222222222222 7777777777777777777777777 33333333333 11 11111 222222222222222222222222222 222 1 22 1111 11111 1 7777777777777777777 11 333 33333333333333333 6666666666666666 222 1 1 11111 11 1111 4444444444444444444444444444444444444 1 1 444444444 222 1 1 5555555 2 111 1 1111 33 1 1 2222222222222
lowQualScore : 33 3 0 111111111111111 666666666 44 2 2 444444444444444 9 66 7777777777777777777777777 66666666666 66666 444 2 55 9999999 2 44444 3 1 444444444444444444444444444 1 3 1 1 55 000 5 4 99 88 6666 11111 4 2222222222222222222 4 0 0 33 222 4 4 44444444444444444 55 4444444444444444 99 444 1 77 77 88 2 0 0 11111 1 3 2 22 1 1 0000 888 4444444444444444444444444444444444444 1 6 2 77 666666666 6 2 000 5 1 8 5555555 77 2 5 999 4 5 3333 5 55 1 6 99 6 2 2 7 11 7 9999999999999 11 2 0
lowQualScore : .. . . ............... ......... .. . . ............... . .. ......................... ........... ..... ... . .. ....... . ..... . . ........................... . . . . .. ... . . .. .. .... ..... . ................... . . . .. ... . . ................. .. ................ .. ... . .. .. .. . . . ..... . . . .. . . .... ... ..................................... . . . .. ......... . . ... . . . ....... .. . . ... . . .... . .. . . .. . . . . .. . ............. .. . .
lowQualScore : 22 2 0 222222222222222 777777777 66 0 4 666666666666666 3 11 9999999999999999999999999 11111111111 77777 777 7 99 5555555 8 22222 3 6 444444444444444444444444444 9 6 4 2 55 111 0 4 99 66 6666 11111 1 0000000000000000000 4 1 8 33 333 4 4 44444444444444444 99 1111111111111111 33 999 4 66 99 77 1 3 9 00000 0 3 4 66 7 9 6666 888 1111111111111111111111111111111111111 4 0 4 99 333333333 0 1 000 0 4 6 9999999 44 9 7 111 5 2 5555 5 33 0 5 22 7 0 5 0 77 0 0000000000000 00 0 8
consensus : NNNNNNNNNNNAATATATATATATATA-TTCGTTTATTTA----AG---TCTCATCATAG---CG-TACA-CAATATTGAACATA-A--TACTTATAA--TACAATTTACA--CAGTTATTA----TATATACTATGTCATTCTATACAGAATTGTAAGAGACAACTCG--GC--AATAT-----TTT---AATATCACA-GTAA-TTATACAATAAT--AAAACAACA---C-ATAC-AATCACACTAT------AATACACTTACTA-GTTAAAATGT-GCACAGCCA--TTGTTAATCCGGACAAAA-GAAGAACACGAATCTTCAT-TTTATT-----CATTTGTCTAAAAC-----A-T---A-----AA-ATAAGTTCTATTAATCCACTGTCTT-T-ATAAACTTTA----GC-------AAAAGAGCAGAATT---AAAATATATTTT-TAAAAA-ATCATTTATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTANNCATTCACTACTTAAANTTCC-AATAACAAATAAAA----TAATATCA---AT---C-----AT-----ACATNNNAAGAT---AA---CG-TTAAATAGACC--AT-AA-T--GCTGTCTNTT---TGCTTAAAAAGAGAGATCTT--TTCTTTCAAGAATTAGAAAG-CAGGTT-TT-GGCAACTATACGTATAAGATCNTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTNTAATGCATATCANTTTGAACAG--CTT-TTTCAATAATATNTTGTCTAATACCGTCATATAAAGGG-AT-TCA-TATCACATGTTTCTCCGATTCAATTCGATCACTACAAAAA
Reference ( gi|1 ) : AACATGTTATAAATATATATTTATATA-TTCGTTTATT-A----AA---TCTAATCATAG---CA-ATCA-CAATATTGAGCATA-A--TACCTTTAA--TACAATTTATA--CGGTTATTACATGTATATACTAAGTAATTCTATACAGAATTGTAAGAGACAAGTTG--GA--AATAT-----TTT---AATATCACA-GTAA-ATATACAGTAAT--AAAACAATA---T-ATAC-AATCACACTGT------AATACACTTAGTA-GTCAAAATGT-GTACAGCCA--TTGTTATCCTGGACAACA-GAAGGACATGGCTCTTCAC-TATATT-----CATTTGTCTTAACC-----A-----A-----AA-ATAAGTTCTATTAAGCCACTGAATT-T-ATAAACTTTA----GC-------ATATGGGCAGAATT---TAAATATATTTTATAAAAG-AT--TTTATT-GCTTCAAA--TCAAATTTGGGTCGACCTGATTAACAATGACTGAACATTCACTACTTAAATTTCA-AATAACAAATAAAA----TAATATCA---AT---C-----AT-----GCATTTTAAGAC---CG---CG-TTGAAGAGACC--AT-AC-T--GATATCTTTT---TGGTTAAAAAGACAGATCTTATTTTTTTCAAGAATTAGAAAG-CAGG-T-TT-AACAACTATACGTATAAGATCGTGGTTTGTGAACAACAAAGTAAGTTTGTTTTCATCTGATATATTTCTTTACAGCATATTAATTTGAACAG--CTT-TTTCAGTAATATGTTGTCTTATGTCGTCATTTAAAGGGCATTTCAATATCACATGTTTCTCTGATTCAACTTGATCACTACAAAAA
gi|15 : AATATAAATT-ATATAATTCGTTCCTTTG----CG---TCTCATCATTG---CA-TAGA-CAATTTTAAAC-TA----TACTGATAT--TACAGTTTACA--CAATCATT-----T-TATACTATGTCATTCTACAAAGAATTATAAGAGACAATATG--CAACAACAG-----TTT---AATATCAAA-ATAACAT-TACAATAAA--ATCACAATA---TAATAC-ATTTCCA-TGT------AA
gi|11 : acATATATATATATATA-TTCGTTTATC-A----GAG--TCTCAACAACG---CA-TACA-CGATATTGAACATA-A--TAC-TTAAA--TACTATTTACA--TAGTTATTA------TATACTATGTCATTCTATACAAAATTGTAAGAGACAACTAG--GC--AATAT-----TTT---ACTACTACCTGTTA---ACACGG-AAT---------TA---T-ATAC-AAACAC
gi|9 : ctTATAAGTATA-A-TTAGTTTATTTC----AG---TCTCATCATAG---TGCAT-A-CCTTAGTAAACATATACTTACTTTT------CTGTTTACAAAC-----TTAC-CGTA-A-ACCATGTCATTCTCTACAGAATTGTAAAAGACGA--TGCAGC--GACAT-----TGT---AATATCACA-GTA-------CAATG--------CAACA---T-ATACTAATAATA-TAC------AATGCACGTTTTG-GTTAAAAGAA-GCACAGCCG--TTGATGATCTAGACGAAA-AATAAACATG------CAT-TTTATTTTTGACATTT-TATAAAAA-----A-----A-----AA-ATAATCCCGATT-----ATT---TT-TAATAAACTTAAAAGTGT-------AAAAGAGCAGAACTAAAAAAATATATgtctttggtgttaatattattatataaaatatacttttgttatcaatttcaatcattaattcaattgt
gi|14 : tttcATATATATATA-TTCGTTTATT-AGAGTAA---T---ATCATGG---CA-TACA-AAATAATGAACATA-A--TACTTAAAA--TACAATTTACA--CAGTTAT------TGTATACTTTGTCATTCTATACAGAATTGTAAGAGACAAA-TG--TA--TATA--------C---AATGTC-C-----A-ATACA-AGTATT--AAAGC
gi|16 : tttaaacatcttttatttcGTTTATT-A----GAGGTTC--ATCATA---------CATCAAT---GAACATA-C--TA--TTTAAATTACAATTTACA--CAGATATTACAT------ACTTTGGCATTCTCTACAGAACTGTAAGAGACACTTTG--GC--AATAT-----TTT---AATATCACA-GTAA-TTATGCAATACT--AAAATAATA---C-ATAC-AATCACACTAT------AATACACTTACTA-GTTAAAAGGT-GTAAAGttaaccaatagaatacatcgg
gi|17 : TTATTTG----AG---TCTCATCATAG---CG-TACA-CAATCTGAAGTATA-A---------AA--TACAATTTACA--CAATTGTTA------TATACTATATCATTCTACAAAGAATTGTAAGAGACA--TTGCAGC--AATACTTTAATTT---AATATCACA-GTAA-CTATACAATAAT--AAAA
gi|21 : ca----AA---CCTCATCATAG---CA-TACA-TAATATTAAACATG----TACTTATAA--TACAGTTTATA--CAGCT------------------GTCATTCTACATAGAATTGTAAGAGAa
gi|19 : ----AG---TCTCAGCATAG---CTTAT-A-CACTATTTAGTA-G-G--CACTTATAT--TATAATTTAAA--CAATTATCATAT--------------ATTCTATACGTAATTATGAGAGACGACTCA--GC--AGTAT-----TAC---AATAGCACA-GTAA-CTGTACAATAA
gi|7 : TAATCAGAGTTTCA--TCA-----ATTGAACATA-A--TACTTATAA--TACAATTAA-A--CAGTT-TT-----TATATACTATGTCATTCTATACAGAATTGTAAGAGACAACTCG--GC--AATAG-----CT-----------CA-GTAA-TTATACAATAATTAAAAAAAACA---C-ATAC-AATCA-------------------TTGCTA-GTTAAAATGT-GCTGAGCCA--TTGTTAATCTGGACAAAA-GAAGAACATGAATCTTCAT-TTTCTT-----CATTTGCCTAAAAC-----AGTAT-A-----GATATAAGAACTATTAATCCACTGCTTC-T-ATAAACTTGA----AA-------AAA-GGGCAGAATTA--TAAAT-TATTTT-TAAAAA-ATCATTTATT-GCCTCAAA--TCCGATTTTTGGCGACCTGATTAACAATGGCTGAACATTCACTACTAAAAGTTCC-AATAACAAATAAAA----TAATGTCA---AT---C-----AT-----Gaatcacacacatttata
gi|3 : tattcgtTATATACTATGTCATTCTATACAGAATTTTAAAAGACAACTCA--GC--AATAT-----TTT---ATTCTCACA-ATTA-GCATACA-------AAAACAACA---C-GTAC-AATCATACTAT------GA-----------------AATAT-GCACAACGA--TTGTTAATCTAGACAAAA-GAAGAACACGAATCTGCAT-TTTATT-----TATTTATCTAAAACTTATTA-----A-----AA-ATAAGTTCTATTAATCCAATGTCTT-T-TTAAACTTTA----CC-------AAAAGATCAGAATT-----------------AAAAA-AT--ATTATTCGCCTCGAA--TAAGATTTGGGACGACCTGATTAACAATGACTACCCATTCACTATTTAAACTTCC-TACAATAATTGAAA----TAAAATCA---AG---T-----AT------TATATAAACAT---CA---AGATCAAAAAGACC--AC-A-----AATGTTTTCTATATGCTTAA---GAGAGATCTT----CTTTCAAGAATTAGAAAG-GAGG-T-TTTGGCAACTATACGTATAAGATCTTGATTGGTGAACAATAAAGTAATGTTGTTTTCATCTGATATG----TTTA----ATACTATTTTGTACAGTTCTT-TTTata
gi|5 : tatatacagtgtctcattcttaatgtatccaggtatatatacgtcaagtatTATATACTATGTCATTCTATACAGCATTTTCAAAGACAACTCA--GC--AATAT-----TTT---ATTATCACA-ATTA-GCATACA-------AAAACAACA---C-GTAC-AATCATACTAT------GA-----------------AATAT-GCACAACGA--TTGTTAATCTAGACAAAAAGAAGAACACGAATCTGCAT-TTTATT-----CATTTATCTAAAACTTATTA-----A-----AA-ATAAATTCTGTTAATCCACTGTCTT-T-ATTAACTTTA----TC-------AAAAGCTCAGAATT----------------CAAAAA-AT--ATTATTCGCCTCGAA--TCTGATTTGGGACGACCTGATTAACAATGACTACCCATTCGCTATTTAAATTTCC-TATAATAATTGAAA----TAATATCA---AG---T-----AT------TATATAAATAC---CA---AGATCAAAAAGACC--AC-A-----AATGTTTTCTATATGCTT---AAGAGAGTTC----TTCTTTCAAGAATTAGAAAG-AAGGTT-TT-GGCAACTATACATATAAGATCTTGATTGGTGAACAATAAAGTAAGGTTGTTTTCATCTGATAGG----TTTA----ATGCTATTTTGTACAG--TTC-TTT
gi|4 : TATAAACAATGTCATTCTACACAGAATTGTAAGAGACAA--CG--AAGCAATAT-----TTT---AATATCACA-GGAA-TTATACAATAAC--AAAA-AATA--------------ACAC----------ATACATTCAG-A-ATATAGATATCATACA-CTAACTCGTTA--------------AA----ATG-----TCAA-TTTATT-----CATTTGTCTAAAACTGG--ATT---A-----AA-ATAAGCTGTATAGATGTACAGTTTT-T-ATCAACTTAA----TC-------AAAAGTCCAGAATT---AAGAAATAT---GTAAAAGTGTCATTTATT-GCCCAAAA--TCATATTTGGGACAACATGATTAACAA----TAAACATTCACT-CTTAAAATTTACAATAACAAATATAA----TAATAGCAGGCATTA-T-----AT-----GCACATGAGGAT---AA---CG-TTAAATAGACCAAAT-A--T--GTTGTCGTTT---TGTTCAAAAAAAGAGA---TA-TTCTTTCAAGAATTCGAAAGTTAGGTT-TT-AACAACTGTACATATAAGATTTTGGTTGGTGAACAATAAAGAAAATTTGTTTTCATTTGACATATTTCTGTAATGCATATCAATTTGAACAG--TTT-TTTTAATACTATTTTt
gi|13 : ctgtACACAGAACTGTAAGAGACA---TG--AC--AGCAT-----TTTTTAAATATTACA-GTAA-TTCAACAATGCT--AAAA-AATAACGC-ATAA-AATGATATTATGTTTCTACTTCACTAACTA-GTTAGACTGT--------CA-------ATC-TAGACAAAA-GAGGAACACCAATCTTCATGTA-AGT-----CATTTGTCTTAAAC-----A-----G-----TA-TTAAAATTTGT---G-CACTGTTCT-T-ATCAAATTTA----GC-------AAAAGAGCAGAACT---aagaccgtcatat
gi|2 : TCG--GC--ACTAT-----TTT---GATATCACA-GTAA-TTATACAGAAAT--AAAACAACA---C-ATAC-AATCACACTAT------AATACACTTACTA-GTTAAAAGGT-GTACAGCCA--TTGTTAATCCGGACAAAA-GAAGAACATGAATCTTCAT-TTTATT-----CATTTGTCTAAAAC-----A-----GCGATGAA-ATAAGTTCTATTAATCCACT-ACTTGT-ATAAACCTTA----GC-------NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNN-NN--NNNNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA-A-TAACAAATAAAA----CAATATCA---AT---C-----ATTATATACGTTATAAGAT---AA---CG-TTAAATAGACC--AT-AAAT--GCTGTCTATT---TGCTTAAAAAGAGAGATCTT----CTTTCAAGAATTAGAAAG-CATA-T-TTTGGCAACTATGCGTATAAGATCGTGGTTAGTGAACAACAAAGTAAGTTTGTTTTCATCTGATAGATTTCTGTAATGCATATCAATTTAAACAG--CTT-TTTCAGTAATTTGTTGTCAAATATCGTTATATAAAGGGTATTTCAATATCACATGTTTCTCGGATTCAACTTGATCACTACAAAAAaa
gi|10 : G--GC--AATAT-----TT---------CACA-GAAA-TTATGCAGTTAT--AAAACAACA---C-ATAC-AATCAAACTAG------AACGCATTTACTA-GTTAAAATGT-GCACAGCCG--TTGTTATTACGGACAAAA-GAATTACACGAATCTTCAT-TTTATT-----AATTTGTCTAAAAC-----AGTATTA-----AA-GTAAGTTATATTAATCCACATTATT-T-ATAAACTTTA----GC-------AAAAGAGCAGAAAT---AAAATTTATTTTATggacactgtgtttaattggcagtcgttca
gi|6 : c--AATAT-----TTT---AATAGCACA-GTAA-TTATACAGTTAT--AAAACAACA---C-ATAC-AATCACACTAT------AATACACTTACTATGT-AAAAGGT-GCACAACCA--TTGTTAATCCGGACAAAA-GAAAAACACGAATCTTCAT-TTTATT-----CATTTGTCTAAAAC-----AGTATTA-----AA-ATAAGTTCTGTTAATCCACTACTTT-T-ACAAACATTA----GCCGCNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNN-NN--NNNNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCATTCATTACTAAAACTTCC-AATAACACATAAAA----CAATATCA---AT---CATTATAT-----ACATTATAAGAT---AA---CG-TTAAGTAGACC--ATAAA-T--GCTGTCTATT---TGCTTAAAAAGAGAGATC----TTCTTTCAAGAATTAGAAAG-CAGGTT-TT-GGCAACTATGCGTATAAGATCGTGGTTGGTGAACAACAAAGTAcattccatatttaaacatattttattcacaaatac
gi|7 : ccTTAGTA-GTGAA----T-GTTCAGCCA--TTGTTA
gi|8 : tattcgttaatcagagtttcatcaattgaacataatacttataatacaattaaacagtttttatatactatgtcattctatacagaattgtaagagacaactcggcaatagctcagtaattatacaataattaaaaaaaacacatacaatcattgctagttaaaatgtgctgagccattgttaatctggacaaaagaagaacatgaatcttcattttcttcatttgcctaaaacagtatagatataagaactattaatccactgcttctataaacttgaaaaaagggcagaattataaattatttttaaaaaatcatttattgcctcaaatccgatttttggcgacctgatAAAAT-ATCATTTATT-GCC-CAAAAATCATATTTGGGACAATAAGATTAACAATGA----ACAT--A--A--TAAAT--CG-AATAA----TAGCAGGCCTAATAT-----A----C-----AC-----ACATC--AGGAT---AA---CG-TTAAATAGACC--AT--C-TATGTTGTCGTTT---TGCTTAAAAAGAGGGATCT-ACTTT---CAAGAATTAGAAAG-CAGG-TCTT-GGCAACTGTAAGTATAAGATCATGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAAAGCATATCATTTTGAACAG--C-T-TTTCAACAATATTTTGTCTAATGCCGTCATATAAAGG-------------ACATGCTTTTCTGATTCAATAGGGTGACTACAAAAAaagttccaataacaaataaaataatgtcaatcatgata
gi|18 : aA----CAATATCA---ATATAT-----AT-----ACATTATAAGATACATGTAACG-TTAAATAGACC--AT-AAAT--GCTGTCTATT---TTCTTAAAAAGA--GATCTT----CTTTCAAGAATTAGAAAT-TAGAAT-TT-GGCAACTTTGCATATTATATCGTAGTTGGTGAACAACggcaaactattttttttcaattggctggcgttcattccttccagtttcctac
gi|12 : AAATATACGTATACGGTCTTTGTTGGTGAACATCAAAGTAAGTTTGCTTTCATCTGACA-ATGTCTCTAATGCATATCAGTTTGAACAG--TTTATTTCAATAATATGTTGTGTAAAACCGTCATATGAAGAGAATATCATTATTTCATGTTTTCATGAATCAATTCGATCACTACAAAA
gi|23 : TTCTTCGATTCAGTTTGATCACTACAAAAAgtgcaaagcatttgttcaatcgacagtcgttcatgccatccagtttataa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): ATTATATATATATTATATATTCCTTTATCTGAATATCATCATAGCATACACACCATTAAACACATATTTAAAGTTAAATTTACATAATATTATATTATAT
Unaligned ( gi|22 ): GTTAGTTTAAACATATTTTATTTCATATATACATGTATATATATATAGTGATATCATCACAGACTGAAAATAGAGATCATAAC
Alignments
lowQualScore : 11 111111 1111111 11111 66666666666 111111111111 11111 2222222222 333333333333333333333333333333 11111111 222 333333 77777777777777777777
lowQualScore : 6 6 5 33 4 2 3 7 6 1 1 222222 2 5 4444 2 66666 444 2 0 4444444 44444 2 3 2 1 999999 55 3 1 1 4 4 2 00000 55555555555 4 0 4 4 555555555555 1 11111 55 5555555555 6 8888 4 1 0 66 1 88888 1 44 5 0 555555555555555555555555555555 66 333 99999999 0 5 444 1 1 3 000000 55 0 1 4 5 5 5 999 77 5 1 0 1 33333333333333333333 4 4
lowQualScore : . . . .. . . . . . . . ...... . . .... . ..... ... . . ....... ..... . . . . ...... .. . . . . . . ..... ........... . . . . ............ . ..... .. .......... . .... . . . .. . ..... . .. . . .............................. .. ... ........ . . ... . . . ...... .. . . . . . . ... .. . . . . .................... . .
lowQualScore : 7 7 0 33 7 3 6 9 1 8 3 111111 9 1 1111 5 22222 444 1 2 8888888 66666 9 1 6 8 666666 33 1 9 2 0 0 3 00000 88888888888 0 8 6 0 777777777777 0 55555 99 8888888888 3 1111 4 5 8 99 0 00000 8 66 0 5 999999999999999999999999999999 99 000 55555555 5 0 000 1 0 2 888888 22 4 0 9 0 0 0 444 99 7 0 8 0 88888888888888888888 6 6
consensus : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATT-----CATTTGTCTAAAAC---AGTA-T--AAA-ATAAGTTCTATTAATCCACTGTTTTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNTAAGAT-A------ACGTTAAATAGACCAT-A-AATGCTGTCTATTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGCATTTCAATATCA------CATGTTTCTCTGATTCAATTTGATCACTACAAAAA
Reference ( family-3778 ) : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTTAAGTCTCATCATAGCGTACACAATATTGAA-CATAATACTTATAATACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATT-----CATTTGTCTAAAAC---A----T--AAA-ATAAGTTCTATTAATCCACTGTCTTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTANNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNNAAGAT-A------ACGTTAAATAGACCAT-A-A-TGCTGTCTNTTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCNTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTNTAATGCATATCANTTTGAACAG--CTT-TTTCAATAATATNTTGTCTAATACCGTCATATAAAGGG-ATTC--ATATCA------CATGTTTCTCCGATTCAATTCGATCACTACAAAAA
gi|1 : AATATATAT-TT-ATATATTCGTTTATT-AAATCTAATCATAGCAATCACAATATTGAG-CATAATACCTTTAATACAATTTATACGGTTATTACATGTA-TATACTAAGTAATTCTATACAGAATTGTAAGAGACAAG-T-TGGAA-ATAT-----TTT---AATATCACAGTAAATATACAG-TAAT--AAAA--C--A-ATATATAC-AATCACACTGT------AATACACTTAGTAGTCAAAATGTGTACAGCCAT-TGTTATCCTGGACAACA-GAAGGACATGGCTCTTCACTATATT-----CATTTGTCTTAACC---A-------AAA-ATAAGTTCTATTAAGCCACTGAATTT-ATAAACTTTA----GC------ATATGGGCAGAATT---T-AAATATATTTTATAAAAG-AT--TT---TATT-GCTTCAAA--TCAAATTTGGGTCGACCTGATTAACAATGACTGAACATTCACTACTTAAATTTC-AAATAACAAATAAAATAATATCA------A---T---C-----AT-----G--CA--TTTTAAGAC-C------GCGTTGAAGAGACCAT-A-C-TGATATCTTTTTGGTTAAAAAGACAGATCTTATTTTTTTCAAGAATTAGAAAG-CAGG-TTTAACAACTATACGTATAAGATCGTGGTTTGTGAACAACAAAGTAAGTTTGTTTTCATCTGATATATTTCTTTACAGCATATTAATTTGAACAG--CTT-TTTCAGTAATATGTTGTCTTATGTCGTCATTTAAAGGGCATTTCAATATCA------CATGTTTCTCTGATTCAACTTGATCACTACAAAAA
gi|10 : aacatgttata-CGGCA-ATAT-----TT---------CACAGAAATTATGCAG-TTAT--AAAA--C--A-ACACATAC-AATCAAACTAG------AACGCATTTACTAGTTAAAATGTGCACAGCCGT-TGTTATTACGGACAAAA-GAATTACACGAATCTTCATTTTATT-----AATTTGTCTAAAAC---AGTATT--AAA-GTAAGTTATATTAATCCACATTATTT-ATAAACTTTA----GC------AAAAGAGCAGAAAT---A-AAATTTATTTT--------ATCATTCCATATT-
gi|11 : ATATATAT-AT-ATATATTCGTTTATCAGAGTCTCAACAACGCATACACGATATTGAA-CATAATACTTA-AATACTATTTACATAGTTATTA----TA---TACTATGTCATTCTATACAAAATTGTAAGAGACAAC-T-AGGCA-ATAT-----TTT---ACTACTACtaaacatattttattcacaaatac
gi|12 : ctAAATATACGTATACGGTCTTTGTTGGTGAACATCAAAGTAAGTTTGCTTTCATCTGACA-ATGTCTCTAATGCATATCAGTTTGAACAG--TTTATTTCAATAATATGTTGTGTAAAACCGTCATATGAAGAG-A-----ATATCATTATTTCATGTTTTCATGAATCAATTCGATCACTACAAAActgttaacacggaattatatacaaacacgtctttggtgttaatattattatataaaatatacttttgttatcaatttcaatcattaattcaattgt
gi|13 : ACACAGAACTGTAAGAGACA-----TGACA-GCAT-----TTTTTAAATATTACAGTAATTCAACAA-TGCT--AAAAAAT--A-ACGCATAA-AATGATATTATGTTTCTACTTCACTAACTAGTTAGA-------------C-TGTCAATCTAGACAAAA-GAGGAACACCAATCTTCATGTAAGT-----CATTTGTCTTAAAC---AGTATT--AAA-AT--------TTG-TGCACTGTTCTT-ATCAAATTTA----GC------AAAAGAGCAGAACT---A-Agtgcaaagcatttgttcaatcgacagtcgttcatgccatccagtttataa
gi|14 : ATAT-AT-ATATATTCGTTTATTAGAGTAATATCATGGCATACAAAATAATGAA-CATAATACTTAAAATACAATTTACACAGTTAT------TG-TATACTTTGTCATTCTATACAGAATTGTAAGAGACAAA-T---GTATATA--------C---AATGTC-CA------ATACAAGTATT--AAAG--CTTA-ACCAATAG-AAT-ACA
gi|15 : tttaaacatcttttatttcAATATAAATTAT-ATA-ATTCGTTCCTTTGCGTCTCATCATTGCATAGACAATTTTAAA-C-TA-TACTGATATTACAGTTTACACAATCATT-----T--TATACTATGTCATTCTACAAAGAATTATAAGAGACAATATGCAACA-ACAG-----TTT---AATATCAAAATAACATTACAA-TAA-----------------------AATCACAATAT------AATACATTTtcgg
gi|16 : acGTTTATTAGAGGTTCATCATA-CAT---CAAT---GAA-CATACTATTTAAATTACAATTTACACAGATATTA----CA-TA--CTTTGGCATTCTCTACAGAACTGTAAGAGACACT-T-TGGCA-ATAT-----TTT---AATATCACAGTAATTATGCAA-TACT--AAAA--T--A-ATACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTAAAGccatgtaa
gi|17 : TTATTTGAGTCTCATCATAGCGTACACAAT-CTGAAGTATAA-------AATACAATTTACACAATTGTTA----TA-TA--CTATATCATTCTACAAAGAATTGTAAGAGACATT-G-CAGCA-ATACTTTAATTT---AATATCACAGTAACTATACAA-TAAT--AAAA--
gi|18 : caACAATATCA------A---TATAT-----AT-----A--CA--TTATAAGAT-ACATGTAACGTTAAATAGACCAT-A-AATGCTGTCTATTTTCTTAAAAAGAGA----T--CTTCTTTCAAGAATTAGAAAT-TAGAATTTGGCAACTTTGCATATTATATCGTAGTTGGTGAACAACa
gi|19 : AGTCTCAGCATAGCTTATACACTATTTAG-TA-GGCACTTATATTATAATTTAAACAATTATCA----TA-TAT----------TCTATACGTAATTATGAGAGACGAC-T-CAGCA-GTAT-----TAC---AATAGCACAGTAACTGTACAA-TA----AAAT--C--ACACACAT
gi|2 : -T-CGGCA-CTAT-----TTT---GATATCACAGTAATTATACAG-AAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACATGAATCTTCATTTTATT-----CATTTGTCTAAAAC---AGCGAT--GAA-ATAAGTTCTATTAATCCACTACTTGT-ATAAACCTTA----GC------NNNNNNNNNNNNNN---N-NNNNNNNNNNN-NNNNNN-NNNNNN---NNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTC-CAATAACAAATAAAACAATATCA------A---T---C-----ATTATATA--CG--TTATAAGAT-A------ACGTTAAATAGACCAT-A-AATGCTGTCTATTTGCTTAAAAAGAGAGATCT--T--CTTTCAAGAATTAGAAAG-CATATTTTGGCAACTATGCGTATAAGATCGTGGTTAGTGAACAACAAAGTAAGTTTGTTTTCATCTGATAGATTTCTGTAATGCATATCAATTTAAACAG--CTT-TTTCAGTAATTTGTTGTCAAATATCGTTATATAAAGGGTATTTCAATATCA------CATGTTTCTCGGATTCAACTTGATCACTACAAAAAttata
gi|20 : ATATATAT-ATTATATATTCCTTTATCTGAATATCATCATAGCATACACACCATTAAA-CAC-ATATTTAAAGTTAAATTTACATAA-TATTA----TATTATAggacactgtgtttaattggcagtcgttca
gi|21 : attCTCATCATAGCATACATAATATTAAA-CATG-TACTTATAATACAGTTTATACAGCT-------------------GTCATTCTACATAGAATTGTAAGAGAt
gi|23 : aacTTCTTCGATTCAGTTTGATCACTACAAAAA
gi|3 : ----TA-TATACTATGTCATTCTATACAGAATTTTAAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTCTCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAA-GAAGAACACGAATCTGCATTTTATT-----TATTTATCTAAAACTT-A----TTAAAA-ATAAGTTCTATTAATCCAATGTCTTT-TTAAACTTTA----CC------AAAAGATCAGAATT---A-AAAAATATT-------------ATT---C----GCCTCGAA--TAAGATTTGGGACGACCTGATTAACAATGACTACCCATTCACTATTTAAACTTC-CTACAATAATTGAAATAAAATCA------A---G---T-----AT--------TA--TATAAACATCA------AGATCAAAAAGACCAC-A-AATGTTTTCTATATGCTTAA---GAGAGATCT--T--CTTTCAAGAATTAGAAAG-GAGGTTTTGGCAACTATACGTATAAGATCTTGATTGGTGAACAATAAAGTAATGTTGTTTTCATCTGATATGTT----TAATAC-TAT---TTTGTACAGTTCTT-TTTtgacaaagtctttgttcaatacgcagtggttcataccttccagttt
gi|4 : tatatacagtgtctcattcttaatgtatccaggtatatatacgtcaagtat----TA-TAAACAATGTCATTCTACACAGAATTGTAAGAGACAAC-G-AAGCA-ATAT-----TTT---AATATCACAGGAATT---------AT--ACAA--T--A-ACAAA----AA-------AT------AACACA--TAC-ATTCAGAATATAGATA-TCATACACTAACTCGT-TAAAA---------TG-----TCAATTTATT-----CATTTGTCTAAAACTGGA----TT-AAA-ATAAGCTGTATAGATGTACAGTTTTT-ATCAACTTAA----TC------AAAAGTCCAGAATT---A-AGAAATATGT---AAAAGTGTCATT---TATT-GCCCAAAA--TCATATTTGGGACAACATGATTAACAAT----AAACATTCACT-CTTAAAATTTACAATAACAAATATAATAATAGCAGGC---A---T---T-----AT-----ATGCA--CATGAGGAT-A------ACGTTAAATAGACCAA-ATA-TGTTGTCGTTTTGTTCAAAAAAAGAGATA----TTCTTTCAAGAATTCGAAAGTTAGGTTTTAACAACTGTACATATAAGATTTTGGTTGGTGAACAATAAAGAAAATTTGTTTTCATTTGACATATTTCTGTAATGCATATCAATTTGAACAG--TTT-TTTTAATACTATTT----TAAGACCGTCATAT
gi|5 : ctgt----TA-TATACTATGTCATTCTATACAGCATTTTCAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTATCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAAAGAAGAACACGAATCTGCATTTTATT-----CATTTATCTAAAACTT-A----TTAAAA-ATAAATTCTGTTAATCCACTGTCTTT-ATTAACTTTA----TC------AAAAGCTCAGAATT-----------------CAAAAA-AT-ATT----ATTCGCCTCGAA--TCTGATTTGGGACGACCTGATTAACAATGACTACCCATTCGCTATTTAAATTTC-CTATAATAATTGAAATAATATCA------AGTAT---T-----AT-----A--TAAATACCAAGAT------------CAAAAAGACCAC-A-AATGTTTTCTATATGCTTAA---GAGAGTTCT--T--CTTTCAAGAATTAGAAAG-AAGGTTTTGGCAACTATACATATAAGATCTTGATTGGTGAACAATAAAGTAAGGTTGTTTTCATCTGATAGGTT----TAATGC-TAT---TTTGTACAG--TTC-TTT
gi|6 : CA-ATAT-----TTT---AATAGCACAGTAATTATACAG-TTAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTATGTAAAAGGTGCACAACCAT-TGTTAATCCGGACAAAA-GAAAAACACGAATCTTCATTTTATT-----CATTTGTCTAAAAC---AGTATT--AAA-ATAAGTTCTGTTAATCCACTACTTTT-ACAAACATTA----GCCGCNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNN-NNNNNN-NNNNNN---NNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCATTCATTACTAAAACTTC-CAATAACACATAAAACAATATCA------A---T---CATTATAT-----A--CA--TTATAAGAT-A------ACGTTAAGTAGACCATAA-A-TGCTGTCTATTTGCTTAAAAAGAGAGATC----TTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATGCGTATAAGATCGTGGTTGGTGAACAACAAAGTAt
gi|7 : cTATTCGTTAATCAGAGTTTCATCA-------------ATTGAA-CATAATACTTATAATACAATT-AAACAGTT-TT-----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAG-----CT-----------CAGTAATTATACAA-TAATTAAAAA--A--A-ACACATAC-AATCA-------------------TTGCTAGTTAAAATGTGCTGAGCCAT-TGTTAATCTGGACAAAA-GAAGAACATGAATCTTCATTTTCTT-----CATTTGCCTAAAAC---AGTA-T--AGATATAAGAACTATTAATCCACTGCTTCT-ATAAACTTGA----A-------AAAAGGGCAGAATT---ATAAAT-TATTTT-TAAAAA-ATCATT---TATT-GCCTCAAA--TCCGATTTTTGGCGACCTGATTAACAATGGCTGAACATTCACTACTAAAAGTTC-CAATAACAAATAAAATAATGTCA------A---T---C-----AT-----
gi|8 : AAAAATATCATT---TATT-GCC-CAAAAATCATATTTGGGACAATAAGATTAACAATGA-------------AC------------ATAATAAATCGAATAATAGCAGGCCTAA---TA--T-----AC-----A--CA--CATCAGGAT-A------ACGTTAAATAGACCAT-CTA-TGTTGTCGTTTTGCTTAAAAAGAGGGATCT--A--CTTTCAAGAATTAGAAAG-CAGGTCTTGGCAACTGTAAGTATAAGATCATGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAAAGCATATCATTTTGAACAG--C-T-TTTCAACAATATTTTGTCTAATGCCGTCATATAAAGG-------------A------CATGCTTTTCTGATTCAATAGGGTGACTACAAAAAgata
gi|9 : TATAA-GT-ATA-ATTAGTTTATTTCAGTCTCATCATAGTGCATACCTTAGTAAA-CATA-TACTTACTTTTCTGTTTACAAACTTACCG----TA--A-ACCATGTCATTCTCTACAGAATTGTAAAAGACGAT-G-CAGCG-ACAT-----TGT---AATATCACAGTA------CAA-TG----------C--A-ACATATACTAATAATA-TAC------AATGCACGTTTTGGTTAAAAGAAGCACAGCCGT-TGATGATCTAGACGAAA-AATAAACATG------CATTTTATTTTTGACATTT-TATAAAAA---A-------AAA-ATAATCCCGATTA--------TTTTTAATAAACTTAAAAGTGT------AAAAGAGCAGAACTAAAA-AAATATATggcaaactattttttttcaattggctggcgttcattccttccagtttcctac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTAGTTTAAACATATTTTATTTCATATATACATGTATATATATATAGTGATATCATCACAGACTGAAAATAGAGATCATAAC
Alignments
lowQualScore : 111111 1111111 22222222222 111111111111 11111 222222222222 11111 333333333333333333333333333333 11111111 333333
lowQualScore : 6 6 5 1 2 3 7 6 1 1 888888 2 5 4444 2 66666 444 2 0 4444444 44444 2 3 2 1 999999 55 3 1 1 4 4 2 22222222222 4 2 55 4 4 555555555555 1 11111 55 000000000000 6 8888 4 1 0 66 1 33333 1 44 5 0 555555555555555555555555555555 66 333 99999999 0 0 1 0 3 000000 55 0 2 4 5 4 5 888 77 5 5 1 99 3 3 0
lowQualScore : . . . . . . . . . . ...... . . .... . ..... ... . . ....... ..... . . . . ...... .. . . . . . . ........... . . .. . . ............ . ..... .. ............ . .... . . . .. . ..... . .. . . .............................. .. ... ........ . . . . . ...... .. . . . . . . ... .. . . . .. . . .
lowQualScore : 7 7 0 0 3 6 9 1 0 3 777777 9 1 1111 5 22222 444 1 2 8888888 66666 9 1 6 8 666666 33 1 9 2 0 0 3 55555555555 0 4 55 0 0 777777777777 0 55555 99 555555555555 3 1111 4 5 8 99 0 66666 8 66 0 5 999999999999999999999999999999 99 000 55555555 5 1 1 8 2 888888 22 4 9 9 0 3 0 111 99 7 0 0 00 5 5 2
consensus : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-A-TAAA-ATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNTAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
Reference ( family-3778 ) : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-A-TAAA-ATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNTAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGCATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
gi|1 : AATATATAT-TT-ATATATTCGTTTATTAAA-TCTAATCATAGCAATCACAATATTGAG-CATAATACCTTTAATACAATTTATACGGTTATTACATGTA-TATACTAAGTAATTCTATACAGAATTGTAAGAGACAAG-T-TGGAA-ATAT-----TTT---AATATCACAGTAAATATACAG-TAAT--AAAA--C--A-ATATATAC-AATCACACTGT------AATACACTTAGTAGTCAAAATGTGTACAGCCAT-TGTTATCCTGGACAACA-GAAGGACATGGCTCTTCACTATATTCATTTGTCTTAACC--A--------AAA-ATAAGTTCTATTAAGCC--ACTGAA-TTT-ATAAACTTTA----GC------ATATGGGCAGAATT---T-AAATATATTTTATAAAAG-AT--TT---TATT-GCTTCAAA--TCAAATTTGGGTCGACCTGATTAACAATGACTGAACATTCACTACTTAAATTTC-AAATAACAAATAAAATAATATCA------A---T---C-----AT-----G--CA--TTTTAAGAC-C------GCGTTGAAGAGACCAT-ACTGATATCTTTTTGGTTAAAAAGACAGATCTTATTTTTTTCAAGAATTAGAAAG-CAGG-TTTAACAACTATACGTATAAGATCGTGGTTTGTGAACAACAAAGTAAGTTTGTTTTCATCTGATATATTTCTTTACAGCATATTAATTTGAACAG--CTT-TTTCAGTAATATGTTGTCTTATGTCGTCATTTAAAGGGCATTTCAATATCACATGTTTCTCTGATTCAACTTGATCACTACAAAAA
gi|10 : aacatgttata-CGGCA-ATAT-----TT---------CACAGAAATTATGCAG-TTAT--AAAA--C--A-ACACATAC-AATCAAACTAG------AACGCATTTACTAGTTAAAATGTGCACAGCCGT-TGTTATTACGGACAAAA-GAATTACACGAATCTTCATTTTATTAATTTGTCTAAAAC--A--GT-ATTAAA-GTAAGTTATATTAATCC--AC-ATTATTT-ATAAACTTTA----GC------AAAAGAGCAGAAAT---A-AAATTTATTTT--------ATCATTCCATATT-
gi|11 : ATATATAT-AT-ATATATTCGTTTATCAGAGTCTCAACAACGCATACACGATATTGAA-CATAATACTTA-AATACTATTTACATAGTTAT------TA-TATACTATGTCATTCTATACAAAATTGTAAGAGACAAC-T-AGGCA-ATAT-----TTT---ACTACTACtaaacatattttattcacaaatac
gi|12 : ctAAATATACGTATACGGTCTTTGTTGGTGAACATCAAAGTAAGTTTGCTTTCATCTGACA-ATGTCTCTAATGCATATCAGTTTGAACAG--TTTATTTCAATAATATGTTGTGTAAAACCGTCATATGAAGAGAATATCATTATTTCATGTTTTCATGAATCAATTCGATCACTACAAAActgttaacacggaattatatacaaacacgtctttggtgttaatattattatataaaatatacttttgttatcaatttcaatcattaattcaattgt
gi|13 : ACACAGAACTGTAAGAGACA-----TGACA-GCAT-----TTTTTAAATATTACAGTAATTCAACAA-TGCT--AAAAAAT--A-ACGCATAA-AATGATATTATGTTTCTACTTCACTAACTAGTTAGA-------------C-TGTCAATCTAGACAAAA-GAGGAACACCAATCTTCATGTAAGTCATTTGTCTTAAAC--A--GT-A-TTAA-A--------ATTTGTGC--ACTGTT-CTT-ATCAAATTTA----GC------AAAAGAGCAGAACT---A-Agtgcaaagcatttgttcaatcgacagtcgttcatgccatccagtttataa
gi|14 : ATAT-AT-ATATATTCGTTTATTAGAGTAATATCATGGCATACAAAATAATGAA-CATAATACTTAAAATACAATTTACACAGTTAT------TG-TATACTTTGTCATTCTATACAGAATTGTAAGAGACAAA-T---GTATATA--------C---AATGTC-CA------ATACAAGTATT--AAAG--CTTA-ACCAATAG-AAT-ACA
gi|15 : tttaaacatcttttatttcAATATAAATTAT-ATA-ATTCGTTCCTTTGCGTCTCATCATTGCATAGACAATTTTAAA-C-TA-TACTGATATTACAGTTTACACAATCATT-----T--TATACTATGTCATTCTACAAAGAATTATAAGAGACAATATGCAACA-ACAG-----TTT---AATATCAAAATAACATTACAA-TAA-----------------------AATCACAATAT------AATACATTTtcgg
gi|16 : acGTTTATTAGAGGTTCATCATA-CAT---CAAT---GAA-CATACTATTTAAATTACAATTTACACAGATATTA----CA-TA--CTTTGGCATTCTCTACAGAACTGTAAGAGACACT-T-TGGCA-ATAT-----TTT---AATATCACAGTAATTATGCAA-TACT--AAAA--T--A-ATACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTAAAGccatgtaa
gi|17 : TTATTTGAGTCTCATCATAGCGTACACAAT-CTGAAGTATAA-------AATACAATTTACACAATTGTTA----TA-TA--CTATATCATTCTACAAAGAATTGTAAGAGACATT-G-CAGCA-ATACTTTAATTT---AATATCACAGTAACTATACAA-TAAT--AAAA--
gi|18 : caACAATATCA------A---TATAT-----AT-----A--CA--TTATAAGAT-ACATGTAACGTTAAATAGACCATAAATGCTGTCTATTTTCTTAAAAAGAGA----T--CTTCTTTCAAGAATTAGAAAT-TAGAATTTGGCAACTTTGCATATTATATCGTAGTTGGTGAACAACa
gi|19 : AGTCTCAGCATAGCTTATACACTATTTAG-TA-GGCACTTATATTATAATTTAAACAATTATCA----TA-TAT----------TCTATACGTAATTATGAGAGACGAC-T-CAGCA-GTAT-----TAC---AATAGCACAGTAACTGTACAA-TA----AAAT--C--ACACACAT
gi|2 : -T-CGGCA-CTAT-----TTT---GATATCACAGTAATTATACAG-AAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACATGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GCGA-TGAA-ATAAGTTCTATTAATCC--ACTACT-TGT-ATAAACCTTA----GC------NNNNNNNNNNNNNN---N-NNNNNNNNNNN-NNNNNN-NNNNNN---NNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTC-CAATAACAAATAAAACAATATCA------A---T---C-----ATTATATA--CG--TTATAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--T--CTTTCAAGAATTAGAAAG-CATATTTTGGCAACTATGCGTATAAGATCGTGGTTAGTGAACAACAAAGTAAGTTTGTTTTCATCTGATAGATTTCTGTAATGCATATCAATTTAAACAG--CTT-TTTCAGTAATTTGTTGTCAAATATCGTTATATAAAGGGTATTTCAATATCACATGTTTCTCGGATTCAACTTGATCACTACAAAAAttata
gi|20 : ATATATAT-ATTATATATTCCTTTATCTGAATATCATCATAGCATACACACCATTAAA-CAC-ATATTTAAAGTTAAATTTACATAA-TATTA----TATTATAggacactgtgtttaattggcagtcgttca
gi|21 : attCTCATCATAGCATACATAATATTAAA-CATG-TACTTATAATACAGTTTATACAGCT-------------------GTCATTCTACATAGAATTGTAAGAGAt
gi|23 : aacTTCTTCGATTCAGTTTGATCACTACAAAAA
gi|3 : ----TA-TATACTATGTCATTCTATACAGAATTTTAAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTCTCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAA-GAAGAACACGAATCTGCATTTTATTTATTTATCTAAAACTTA--TT-A--AAA-ATAAGTTCTATTAATCC--AATGTC-TTT-TTAAACTTTA----CC------AAAAGATCAGAATT---A-AAAAATATT-------------ATT---C----GCCTCGAA--TAAGATTTGGGACGACCTGATTAACAATGACTACCCATTCACTATTTAAACTTC-CTACAATAATTGAAATAAAATCA------A---G---T-----AT--------TA--TATAAACATCA------AGATCAAAAAGACCACAAATGTTTTCTATATGCTTAA---GAGAGATCT--T--CTTTCAAGAATTAGAAAG-GAGGTTTTGGCAACTATACGTATAAGATCTTGATTGGTGAACAATAAAGTAATGTTGTTTTCATCTGATATGTT----TAATAC-TAT---TTTGTACAGTTCTT-TTTtgacaaagtctttgttcaatacgcagtggttcataccttccagttt
gi|4 : tatatacagtgtctcattcttaatgtatccaggtatatatacgtcaagtat----TA-TAAACAATGTCATTCTACACAGAATTGTAAGAGACAAC-G-AAGCA-ATAT-----TTT---AATATCACAGGAATT---------AT--ACAA--T--A-ACAAA----AA-------AT------AACACA--TAC-ATTCAGAATATAGATA-TCATACACTAACTCGT-TAAAA---------TG-----TCAATTTATTCATTTGTCTAAAAC--T--GG-ATTAAA-ATAAGCTGTATAGATGT--ACAGTT-TTT-ATCAACTTAA----TC------AAAAGTCCAGAATT---A-AGAAATA--TG-TAAAAGTGTCATT---TATT-GCCCAAAA--TCATATTTGGGACAACATGATTAACAATAA----ACATTCACT-CTTAAAATTTACAATAACAAATATAATAATAGCAGGC---A---T---T-----AT-----ATGCA--CATGAGGAT-A------ACGTTAAATAGACCAAATATGTTGTCGTTTTGTTCAAAAAAAGAGATA----TTCTTTCAAGAATTCGAAAGTTAGGTTTTAACAACTGTACATATAAGATTTTGGTTGGTGAACAATAAAGAAAATTTGTTTTCATTTGACATATTTCTGTAATGCATATCAATTTGAACAG--TTT-TTTTAATACTAT----TTTAAGACCGTCATAT
gi|5 : ctgt----TA-TATACTATGTCATTCTATACAGCATTTTCAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTATCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAAAGAAGAACACGAATCTGCATTTTATTCATTTATCTAAAACTTA--TT-A--AAA-ATAAATTCTGTTAATCC--ACTGTC-TTT-ATTAACTTTA----TC------AAAAGCTCAGAATT-----------------CAAAAA-AT-ATT----ATTCGCCTCGAA--TCTGATTTGGGACGACCTGATTAACAATGACTACCCATTCGCTATTTAAATTTC-CTATAATAATTGAAATAATATCA------AGTAT---T-----AT-----A--TAAATACCAAGAT------------CAAAAAGACCACAAATGTTTTCTATATGCTTAA---GAGAGTTCT--T--CTTTCAAGAATTAGAAAG-AAGGTTTTGGCAACTATACATATAAGATCTTGATTGGTGAACAATAAAGTAAGGTTGTTTTCATCTGATAGGTT----TAATGC-TAT---TTTGTACAG--TTC-TTT
gi|6 : CA-ATAT-----TTT---AATAGCACAGTAATTATACAG-TTAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTATGTAAAAGGTGCACAACCAT-TGTTAATCCGGACAAAA-GAAAAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-ATTAAA-ATAAGTTCTGTTAATCC--ACTACT-TTT-ACAAACATTA----GCCGCNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNN-NNNNNN-NNNNNN---NNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCATTCATTACTAAAACTTC-CAATAACACATAAAACAATATCA------A---T---CATTATAT-----A--CA--TTATAAGAT-A------ACGTTAAGTAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATC----TTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATGCGTATAAGATCGTGGTTGGTGAACAACAAAGTAt
gi|7 : cTATTCGTTAATCAGAGTTTCATCA-------------ATTGAA-CATAATACTTATAATACAATT-AAACAGTT-TT-----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAG-----CT-----------CAGTAATTATACAA-TAATTAAAAA--A--A-ACACATAC-AATCA-------------------TTGCTAGTTAAAATGTGCTGAGCCAT-TGTTAATCTGGACAAAA-GAAGAACATGAATCTTCATTTTCTTCATTTGCCTAAAAC--A--GT-A-TAGATATAAGAACTATTAATCC--ACTGCT-TCT-ATAAACTTGA----A-------AAAAGGGCAGAATT---ATAAAT-TATTTT-TAAAAA-ATCATT---TATT-GCCTCAAA--TCCGATTTTTGGCGACCTGATTAACAATGGCTGAACATTCACTACTAAAAGTTC-CAATAACAAATAAAATAATGTCA------A---T---C-----AT-----
gi|8 : AAAAATATCATT---TATT-GCC-CAAAAATCATATTTGGGACAATAAGATTAACAATGA-------------AC------------ATAATAAATCGAATAATAGCAGGCCTAA---TA--T-----AC-----A--CA--CATCAGGAT-A------ACGTTAAATAGACCATCTATGTTGTCGTTTTGCTTAAAAAGAGGGATCT--A--CTTTCAAGAATTAGAAAG-CAGGTCTTGGCAACTGTAAGTATAAGATCATGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAAAGCATATCATTTTGAACAG--C-T-TTTCAACAATATTTTGTCTAATGCCGTCATATAAAGG-------------ACATGCTTTTCTGATTCAATAGGGTGACTACAAAAAgata
gi|9 : TATAA-GT-ATA-ATTAGTTTATTTCAGTCTCATCATAGTGCATACCTTAGTAAA-CATA-TACTTACTTTTCTGTTTACAAACTTACCG----TA--A-ACCATGTCATTCTCTACAGAATTGTAAAAGACGAT-G-CAGCG-ACAT-----TGT---AATATCACAGTA------CAA-TG----------C--A-ACATATACTAATAATA-TAC------AATGCACGTTTTGGTTAAAAGAAGCACAGCCGT-TGATGATCTAGACGAAA-AATAAACATG------CATTTTATT--TTTG------AC--ATTTT-A-TAAA-AAAAA----AATAATCCCGATTATT-TTTAATAAACTTAAAAGTGT------AAAAGAGCAGAACTAAAA-AAATATATggcaaactattttttttcaattggctggcgttcattccttccagtttcctac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTAGTTTAAACATATTTTATTTCATATATACATGTATATATATATAGTGATATCATCACAGACTGAAAATAGAGATCATAAC
Alignments
lowQualScore : 111111 1111111 22222222222 111111111111 11111 222222222222 11111 333333333333333333333333333333 11111111 333333
lowQualScore : 6 6 5 1 2 3 7 6 1 1 888888 2 5 4444 2 66666 444 2 0 4444444 44444 2 3 2 1 999999 55 3 1 1 4 4 2 22222222222 4 2 55 4 4 555555555555 1 11111 55 000000000000 6 8888 4 1 0 66 1 33333 1 44 5 0 555555555555555555555555555555 66 333 99999999 0 0 1 0 3 000000 55 0 2 4 5 4 5 888 77 5 5 1 77 3 3 0
lowQualScore : . . . . . . . . . . ...... . . .... . ..... ... . . ....... ..... . . . . ...... .. . . . . . . ........... . . .. . . ............ . ..... .. ............ . .... . . . .. . ..... . .. . . .............................. .. ... ........ . . . . . ...... .. . . . . . . ... .. . . . .. . . .
lowQualScore : 7 7 0 0 3 6 9 1 0 3 777777 9 1 1111 5 22222 444 1 2 8888888 66666 9 1 6 8 666666 33 1 9 2 0 0 3 55555555555 0 4 55 0 0 777777777777 0 55555 99 555555555555 3 1111 4 5 8 99 0 66666 8 66 0 5 999999999999999999999999999999 99 000 55555555 5 1 1 8 2 888888 22 4 9 9 0 3 0 111 99 7 0 0 00 5 5 2
consensus : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-A-TAAA-ATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNTAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
Reference ( family-3778 ) : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-A-TAAA-ATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNTAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
gi|1 : AATATATAT-TT-ATATATTCGTTTATTAAA-TCTAATCATAGCAATCACAATATTGAG-CATAATACCTTTAATACAATTTATACGGTTATTACATGTA-TATACTAAGTAATTCTATACAGAATTGTAAGAGACAAG-T-TGGAA-ATAT-----TTT---AATATCACAGTAAATATACAG-TAAT--AAAA--C--A-ATATATAC-AATCACACTGT------AATACACTTAGTAGTCAAAATGTGTACAGCCAT-TGTTATCCTGGACAACA-GAAGGACATGGCTCTTCACTATATTCATTTGTCTTAACC--A--------AAA-ATAAGTTCTATTAAGCC--ACTGAA-TTT-ATAAACTTTA----GC------ATATGGGCAGAATT---T-AAATATATTTTATAAAAG-AT--TT---TATT-GCTTCAAA--TCAAATTTGGGTCGACCTGATTAACAATGACTGAACATTCACTACTTAAATTTC-AAATAACAAATAAAATAATATCA------A---T---C-----AT-----G--CA--TTTTAAGAC-C------GCGTTGAAGAGACCAT-ACTGATATCTTTTTGGTTAAAAAGACAGATCTTATTTTTTTCAAGAATTAGAAAG-CAGG-TTTAACAACTATACGTATAAGATCGTGGTTTGTGAACAACAAAGTAAGTTTGTTTTCATCTGATATATTTCTTTACAGCATATTAATTTGAACAG--CTT-TTTCAGTAATATGTTGTCTTATGTCGTCATTTAAAGGGCATTTCAATATCACATGTTTCTCTGATTCAACTTGATCACTACAAAAA
gi|10 : aacatgttata-CGGCA-ATAT-----TT---------CACAGAAATTATGCAG-TTAT--AAAA--C--A-ACACATAC-AATCAAACTAG------AACGCATTTACTAGTTAAAATGTGCACAGCCGT-TGTTATTACGGACAAAA-GAATTACACGAATCTTCATTTTATTAATTTGTCTAAAAC--A--GT-ATTAAA-GTAAGTTATATTAATCC--AC-ATTATTT-ATAAACTTTA----GC------AAAAGAGCAGAAAT---A-AAATTTATTTT--------ATCATTCCATATT-
gi|11 : ATATATAT-AT-ATATATTCGTTTATCAGAGTCTCAACAACGCATACACGATATTGAA-CATAATACTTA-AATACTATTTACATAGTTAT------TA-TATACTATGTCATTCTATACAAAATTGTAAGAGACAAC-T-AGGCA-ATAT-----TTT---ACTACTACtaaacatattttattcacaaatac
gi|12 : ctAAATATACGTATACGGTCTTTGTTGGTGAACATCAAAGTAAGTTTGCTTTCATCTGACA-ATGTCTCTAATGCATATCAGTTTGAACAG--TTTATTTCAATAATATGTTGTGTAAAACCGTCATATGAAGAGAATATCATTATTTCATGTTTTCATGAATCAATTCGATCACTACAAAActgttaacacggaattatatacaaacacgtctttggtgttaatattattatataaaatatacttttgttatcaatttcaatcattaattcaattgt
gi|13 : ACACAGAACTGTAAGAGACA-----TGACA-GCAT-----TTTTTAAATATTACAGTAATTCAACAA-TGCT--AAAAAAT--A-ACGCATAA-AATGATATTATGTTTCTACTTCACTAACTAGTTAGA-------------C-TGTCAATCTAGACAAAA-GAGGAACACCAATCTTCATGTAAGTCATTTGTCTTAAAC--A--GT-A-TTAA-A--------ATTTGTGC--ACTGTT-CTT-ATCAAATTTA----GC------AAAAGAGCAGAACT---A-Agtgcaaagcatttgttcaatcgacagtcgttcatgccatccagtttataa
gi|14 : ATAT-AT-ATATATTCGTTTATTAGAGTAATATCATGGCATACAAAATAATGAA-CATAATACTTAAAATACAATTTACACAGTTAT------TG-TATACTTTGTCATTCTATACAGAATTGTAAGAGACAAA-T---GTATATA--------C---AATGTC-CA------ATACAAGTATT--AAAG--CTTA-ACCAATAG-AAT-ACA
gi|15 : tttaaacatcttttatttcAATATAAATTAT-ATA-ATTCGTTCCTTTGCGTCTCATCATTGCATAGACAATTTTAAA-C-TA-TACTGATATTACAGTTTACACAATCATT-----T--TATACTATGTCATTCTACAAAGAATTATAAGAGACAATATGCAACA-ACAG-----TTT---AATATCAAAATAACATTACAA-TAA-----------------------AATCACAATAT------AATACATTTtcgg
gi|16 : acGTTTATTAGAGGTTCATCATA-CAT---CAAT---GAA-CATACTATTTAAATTACAATTTACACAGATATTA----CA-TA--CTTTGGCATTCTCTACAGAACTGTAAGAGACACT-T-TGGCA-ATAT-----TTT---AATATCACAGTAATTATGCAA-TACT--AAAA--T--A-ATACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTAAAGccatgtaa
gi|17 : TTATTTGAGTCTCATCATAGCGTACACAAT-CTGAAGTATAA-------AATACAATTTACACAATTGTTA----TA-TA--CTATATCATTCTACAAAGAATTGTAAGAGACATT-G-CAGCA-ATACTTTAATTT---AATATCACAGTAACTATACAA-TAAT--AAAA--
gi|18 : caACAATATCA------A---TATAT-----AT-----A--CA--TTATAAGAT-ACATGTAACGTTAAATAGACCATAAATGCTGTCTATTTTCTTAAAAAGAGA----T--CTTCTTTCAAGAATTAGAAAT-TAGAATTTGGCAACTTTGCATATTATATCGTAGTTGGTGAACAACa
gi|19 : AGTCTCAGCATAGCTTATACACTATTTAG-TA-GGCACTTATATTATAATTTAAACAATTATCA----TA-TAT----------TCTATACGTAATTATGAGAGACGAC-T-CAGCA-GTAT-----TAC---AATAGCACAGTAACTGTACAA-TA----AAAT--C--ACACACAT
gi|2 : -T-CGGCA-CTAT-----TTT---GATATCACAGTAATTATACAG-AAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACATGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GCGA-TGAA-ATAAGTTCTATTAATCC--ACTACT-TGT-ATAAACCTTA----GC------NNNNNNNNNNNNNN---N-NNNNNNNNNNN-NNNNNN-NNNNNN---NNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTC-CAATAACAAATAAAACAATATCA------A---T---C-----ATTATATA--CG--TTATAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--T--CTTTCAAGAATTAGAAAG-CATATTTTGGCAACTATGCGTATAAGATCGTGGTTAGTGAACAACAAAGTAAGTTTGTTTTCATCTGATAGATTTCTGTAATGCATATCAATTTAAACAG--CTT-TTTCAGTAATTTGTTGTCAAATATCGTTATATAAAGGGTATTTCAATATCACATGTTTCTCGGATTCAACTTGATCACTACAAAAAttata
gi|20 : ATATATAT-ATTATATATTCCTTTATCTGAATATCATCATAGCATACACACCATTAAA-CAC-ATATTTAAAGTTAAATTTACATAA-TATTA----TATTATAggacactgtgtttaattggcagtcgttca
gi|21 : attCTCATCATAGCATACATAATATTAAA-CATG-TACTTATAATACAGTTTATACAGCT-------------------GTCATTCTACATAGAATTGTAAGAGAt
gi|23 : aacTTCTTCGATTCAGTTTGATCACTACAAAAA
gi|3 : ----TA-TATACTATGTCATTCTATACAGAATTTTAAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTCTCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAA-GAAGAACACGAATCTGCATTTTATTTATTTATCTAAAACTTA--TT-A--AAA-ATAAGTTCTATTAATCC--AATGTC-TTT-TTAAACTTTA----CC------AAAAGATCAGAATT---A-AAAAATATT-------------ATT---C----GCCTCGAA--TAAGATTTGGGACGACCTGATTAACAATGACTACCCATTCACTATTTAAACTTC-CTACAATAATTGAAATAAAATCA------A---G---T-----AT--------TA--TATAAACATCA------AGATCAAAAAGACCACAAATGTTTTCTATATGCTTAA---GAGAGATCT--T--CTTTCAAGAATTAGAAAG-GAGGTTTTGGCAACTATACGTATAAGATCTTGATTGGTGAACAATAAAGTAATGTTGTTTTCATCTGATATGTT----TAATAC-TAT---TTTGTACAGTTCTT-TTTtgacaaagtctttgttcaatacgcagtggttcataccttccagttt
gi|4 : tatatacagtgtctcattcttaatgtatccaggtatatatacgtcaagtat----TA-TAAACAATGTCATTCTACACAGAATTGTAAGAGACAAC-G-AAGCA-ATAT-----TTT---AATATCACAGGAATT---------AT--ACAA--T--A-ACAAA----AA-------AT------AACACA--TAC-ATTCAGAATATAGATA-TCATACACTAACTCGT-TAAAA---------TG-----TCAATTTATTCATTTGTCTAAAAC--T--GG-ATTAAA-ATAAGCTGTATAGATGT--ACAGTT-TTT-ATCAACTTAA----TC------AAAAGTCCAGAATT---A-AGAAATA--TG-TAAAAGTGTCATT---TATT-GCCCAAAA--TCATATTTGGGACAACATGATTAACAATAA----ACATTCACT-CTTAAAATTTACAATAACAAATATAATAATAGCAGGC---A---T---T-----AT-----ATGCA--CATGAGGAT-A------ACGTTAAATAGACCAAATATGTTGTCGTTTTGTTCAAAAAAAGAGATA----TTCTTTCAAGAATTCGAAAGTTAGGTTTTAACAACTGTACATATAAGATTTTGGTTGGTGAACAATAAAGAAAATTTGTTTTCATTTGACATATTTCTGTAATGCATATCAATTTGAACAG--TTT-TTTTAATACTAT----TTTAAGACCGTCATAT
gi|5 : ctgt----TA-TATACTATGTCATTCTATACAGCATTTTCAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTATCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAAAGAAGAACACGAATCTGCATTTTATTCATTTATCTAAAACTTA--TT-A--AAA-ATAAATTCTGTTAATCC--ACTGTC-TTT-ATTAACTTTA----TC------AAAAGCTCAGAATT-----------------CAAAAA-AT-ATT----ATTCGCCTCGAA--TCTGATTTGGGACGACCTGATTAACAATGACTACCCATTCGCTATTTAAATTTC-CTATAATAATTGAAATAATATCA------AGTAT---T-----AT-----A--TAAATACCAAGAT------------CAAAAAGACCACAAATGTTTTCTATATGCTTAA---GAGAGTTCT--T--CTTTCAAGAATTAGAAAG-AAGGTTTTGGCAACTATACATATAAGATCTTGATTGGTGAACAATAAAGTAAGGTTGTTTTCATCTGATAGGTT----TAATGC-TAT---TTTGTACAG--TTC-TTT
gi|6 : CA-ATAT-----TTT---AATAGCACAGTAATTATACAG-TTAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTATGTAAAAGGTGCACAACCAT-TGTTAATCCGGACAAAA-GAAAAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-ATTAAA-ATAAGTTCTGTTAATCC--ACTACT-TTT-ACAAACATTA----GCCGCNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNN-NNNNNN-NNNNNN---NNNN-NNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCATTCATTACTAAAACTTC-CAATAACACATAAAACAATATCA------A---T---CATTATAT-----A--CA--TTATAAGAT-A------ACGTTAAGTAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATC----TTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATGCGTATAAGATCGTGGTTGGTGAACAACAAAGTAt
gi|7 : cTATTCGTTAATCAGAGTTTCATCA-------------ATTGAA-CATAATACTTATAATACAATT-AAACAGTT-TT-----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAG-----CT-----------CAGTAATTATACAA-TAATTAAAAA--A--A-ACACATAC-AATCA-------------------TTGCTAGTTAAAATGTGCTGAGCCAT-TGTTAATCTGGACAAAA-GAAGAACATGAATCTTCATTTTCTTCATTTGCCTAAAAC--A--GT-A-TAGATATAAGAACTATTAATCC--ACTGCT-TCT-ATAAACTTGA----A-------AAAAGGGCAGAATT---ATAAAT-TATTTT-TAAAAA-ATCATT---TATT-GCCTCAAA--TCCGATTTTTGGCGACCTGATTAACAATGGCTGAACATTCACTACTAAAAGTTC-CAATAACAAATAAAATAATGTCA------A---T---C-----AT-----
gi|8 : AAAAATATCATT---TATT-GCC-CAAAAATCATATTTGGGACAATAAGATTAACAATGA-------------AC------------ATAATAAATCGAATAATAGCAGGCCTAA---TA--T-----AC-----A--CA--CATCAGGAT-A------ACGTTAAATAGACCATCTATGTTGTCGTTTTGCTTAAAAAGAGGGATCT--A--CTTTCAAGAATTAGAAAG-CAGGTCTTGGCAACTGTAAGTATAAGATCATGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAAAGCATATCATTTTGAACAG--C-T-TTTCAACAATATTTTGTCTAATGCCGTCATATAAAGG-------------ACATGCTTTTCTGATTCAATAGGGTGACTACAAAAAgata
gi|9 : TATAA-GT-ATA-ATTAGTTTATTTCAGTCTCATCATAGTGCATACCTTAGTAAA-CATA-TACTTACTTTTCTGTTTACAAACTTACCG----TA--A-ACCATGTCATTCTCTACAGAATTGTAAAAGACGAT-G-CAGCG-ACAT-----TGT---AATATCACAGTA------CAA-TG----------C--A-ACATATACTAATAATA-TAC------AATGCACGTTTTGGTTAAAAGAAGCACAGCCGT-TGATGATCTAGACGAAA-AATAAACATG------CATTTTATT--TTTG------AC--ATTTT-A-TAAA-AAAAA----AATAATCCCGATTATT-TTTAATAAACTTAAAAGTGT------AAAAGAGCAGAACTAAAA-AAATATATggcaaactattttttttcaattggctggcgttcattccttccagtttcctac
blockSeqs : T T T A A G A A A A TA T T TATG T TTTAA TTA T TAATTA AAT C T A C GTTTCT CG T T G A A A ATTTTAT T T CG A A GCCGCNNN A AAAA TT NNNNNNNNNN C CCAT C N AA N NNNNN N AC A GGCCTAATATACA AA TAT ACATGTA C A TCTT TT T G T C A CAG TT A G A GA A T
blockSeqs : . . T A A . A T A A TA . T CT . . . T GTATT CTT . . T T . TT C G G . . A AGTATT . T . . . AAGTGT A AT NN NNNNNNNNNN N N . T . G CTACC T AA . ATCATTATATA . TAT CA C A TT T G T T G A CAA . . G T GT T A
blockSeqs : . . T T T . C A T A CA . T AT . . . C TTAT C . . C A . TA T G G . . A AGCGAT . T . . . GC N A AA TTTTTAAAAA C C . C . T CTACC T AT . GGCATTATATG . ATA A T A TT C G T T G A CAA . . T G . . .
blockSeqs : . . T A A . A T T A TA . T TT . . . T TGCT T . . C C . TA C T A . . A TTATTA . C . . . GC A A AA TGTAAAAGT N T . T . G NNGTG T AC . ATCATTATATA . ATG A T A TT G T G T G A CAT . . . T
blockSeqs : . . . T A . G A A G CG . T TG . . . C TACT C . . C C . TA C T A . . A TGGATT . T . . . GC T N NN CAAAAA C N . N . N CTGAA A AG . ATATATATA . ACC A T A TT A T T . . . . . .
blockSeqs : . T A . A T T A T . T CT . . . C TAAT C . . C C . CA C T A . . A TTATTA . T . . . CC C A TA TTTT C T . T . G A A . . AGTATTATA . TAT A C . TT C T . . . . . . .
blockSeqs : A A . A T G A T . A CT . . . T AAAT C . . T C . TA C G G . . A AGTATT . A . . . TC N A T TT . T . . . T . . . . AGTAT . ATC . T . TA C G
blockSeqs : T A . . C A A . . T CG . . . G TTAT T . . T C . TG . T G . . . AGTAT . . . . . TC G N . . . . A
blockSeqs : . . . . A . . . T CT . . . T TAA C . . C . . . . G . . . . AGTAT . . . . . A A .
blockSeqs : . . . . T . . . . CT . . . G TA C . . T . . . . . .
blockSeqs : . . TG . . . T AT A . . . . . . .
blockSeqs : . . . . . . T TG C . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons : T***** NGNNTT***** TTTAAAAG**** AGCATTATATA******************* TT****
originalCons : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATTA----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAAC--A--GT-A-TAAA-ATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTT-TAAAAA-ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCA------A---T---C-----AT-----A--CA--TNNTAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCT--TTTCTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
finalCons : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACAGTTATT-----TA-TATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAACNGNNTT-----AAA-ATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC------AAAAGAGCAGAATT---A-AAATATATTTAAAAG----ATCATT---TATT-GCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCAAGCATTATATA-------------------CA--TNNTAAGAT-A------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCTT----CTTTCAAGAATTAGAAAG-CAGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTAGTTTAAACATATTTTATTTCATATATACATGTATATATATATAGTGATATCATCACAGACTGAAAATAGAGATCATAAC
Alignments
lowQualScore : 1111111111 1111111 11111111111111 1111111111 11111 111 2222222 1111
lowQualScore : 6 6 5 1 2 3 7 6 1 55 6666666666 4444 2 66666 444 2 0 4444444 44444 2 3 2 1 999999 55 3 1 1 4 4 2 9999999 2 55 4 4 88888888888888 1 99999 88 9999999999 2 88888 1 0 66 1 33333 1 2 5 0 6 000 22 0000000 0 0 1 0 3 0000 55 2 4 5 4 5 888 77 5 5 1 77 3 3 0
lowQualScore : . . . . . . . . . .. .......... .... . ..... ... . . ....... ..... . . . . ...... .. . . . . . . ....... . .. . . .............. . ..... .. .......... . ..... . . .. . ..... . . . . . ... .. ....... . . . . . .... .. . . . . . ... .. . . . .. . . .
lowQualScore : 7 7 0 0 3 6 9 1 0 00 8888888888 1111 5 22222 444 1 2 8888888 66666 9 1 6 8 666666 33 1 9 2 0 0 3 5555555 4 55 0 0 77777777777777 0 00000 99 8888888888 6 44444 5 8 99 0 66666 8 8 0 5 7 777 00 6666666 5 5 1 8 2 6666 22 9 9 0 3 0 111 99 7 0 0 00 5 5 2
consensus : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACA--GTTAT-T-----TATATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAACAGTAT-TAAAATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC--------AAAAGAGCAGAATT---A-AAA-TATATTT---AAAAN-ATCATT---TATTGCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCAANCAT--TATATACATNNCAAGATA------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCTT----CTTTCAAGAATTAGAAAGC-AGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
Reference ( family-3778 ) : NNNNNNNNNNNAATATATAT-AT-ATATATTCGTTTATTNGAGTCTCATCATAGCATACACAATATTGAA-CATAATACTTATANTACAATTTACACA--GTTAT-T-----TATATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAT-----TTT---AATATCACAGTAATTATACAA-TAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAATGTGCACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACACGAATCTTCATTTTATTCATTTGTCTAAAACNGNNT-TAAAATAAGTTCTATTAATCC--ACTGTT-TTT-ATAAACTTTA----GC--------AAAAGAGCAGAATT---A-AAA-TATATTT---AAAAG-ATCATT---TATTGCCTCGAA--TCAGATTTGGGACGACCTGATTAACAATGACTGNNCATTCACTACTTAAANTTC-CAATAACAAATAAAATAATATCAAGCAT--TATATACATNNTAAGATA------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCTT----CTTTCAAGAATTAGAAAGC-AGGTTTTGGCAACTATACGTATAAGATCGTGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAATGCATATCAATTTGAACAG--CTT-TTTCAATAATATGTTGTCTAATACCGTCATATAAAGGGNATTTCAATATCACATGTTTCTCTGATTCAATTTGATCACTACAAAAA
gi|1 : AATATATAT-TT-ATATATTCGTTTATTAAA-TCTAATCATAGCAATCACAATATTGAG-CATAATACCTTTAATACAATTTATACG--GTTAT-TACATGTATATACTAAGTAATTCTATACAGAATTGTAAGAGACAAG-T-TGGAA-ATAT-----TTT---AATATCACAGTAAATATACAG-TAAT--AAAA--C--A-ATATATAC-AATCACACTGT------AATACACTTAGTAGTCAAAATGTGTACAGCCAT-TGTTATCCTGGACAACA-GAAGGACATGGCTCTTCACTATATTCATTTGTCTTAACCA------AAAATAAGTTCTATTAAGCC--ACTGAA-TTT-ATAAACTTTA----GC--------ATATGGGCAGAATT---T-AAA-TATATTTTATAAAAG-AT--TT---TATTGCTTCAAA--TCAAATTTGGGTCGACCTGATTAACAATGACTGAACATTCACTACTTAAATTTC-AAATAACAAATAAAATAATATCAATCAT-------GCATTTTAAGACC------GCGTTGAAGAGACCATAC-TGATATCTTTTTGGTTAAAAAGACAGATCTTATTTTTTTCAAGAATTAGAAAGC-AGGTTT-AACAACTATACGTATAAGATCGTGGTTTGTGAACAACAAAGTAAGTTTGTTTTCATCTGATATATTTCTTTACAGCATATTAATTTGAACAG--CTT-TTTCAGTAATATGTTGTCTTATGTCGTCATTTAAAGGGCATTTCAATATCACATGTTTCTCTGATTCAACTTGATCACTACAAAAA
gi|10 : aacatgttata-CGGCA-ATAT-----TT---------CACAGAAATTATGCAG-TTAT--AAAA--C--A-ACACATAC-AATCAAACTAG------AACGCATTTACTAGTTAAAATGTGCACAGCCGT-TGTTATTACGGACAAAA-GAATTACACGAATCTTCATTTTATTAATTTGTCTAAAACAGTAT-TAAAGTAAGTTATATTAATCC--AC-ATTATTT-ATAAACTTTA----GC--------AAAAGAGCAGAAAT---A-AAA-TTTATTT-------T-ATCATTCCATATT
gi|11 : ATATATAT-AT-ATATATTCGTTTATCAGAGTCTCAACAACGCATACACGATATTGAA-CATAATACTTA-AATACTATTTACATA--GTTA--T-----TATATACTATGTCATTCTATACAAAATTGTAAGAGACAAC-T-AGGCA-ATAT-----TTT---ACTACTACtaaacatattttattcacaaatac
gi|12 : ctAAATATACGTATACGGTCTTTGTTGGTGAACATCAAAGTAAGTTTGCTTTCATCTGACA-ATGTCTCTAATGCATATCAGTTTGAACAG--TTTATTTCAATAATATGTTGTGTAAAACCGTCATATGAAGAGAATATCATTATTTCATGTTTTCATGAATCAATTCGATCACTACAAAActgttaacacggaattatatacaaacacgtctttggtgttaatattattatataaaatatacttttgttatcaatttcaatcattaattcaattgt
gi|13 : ACACAGAACTGTAAGAGACA-----TGACA-GCAT-----TTTTTAAATATTACAGTAATTCAACAA-TGCT--AAAAAAT--A-ACGCATAA-AATGATATTATGTTTCTACTTCACTAACTAGTTAGA-------------C-TGTCAATCTAGACAAAA-GAGGAACACCAATCTTCATGTAAGTCATTTGTCTTAAACAGTAT-TAAAAT--------TTG-TGC--ACTGTT-CTT-ATCAAATTTA----GC--------AAAAGAGCAGAACT---A-Agtgcaaagcatttgttcaatcgacagtcgttcatgccatccagtttataa
gi|14 : ATAT-AT-ATATATTCGTTTATTAGAGTAATATCATGGCATACAAAATAATGAA-CATAATACTTAAAATACAATTTACACA--GTTA--T-----TGTATACTTTGTCATTCTATACAGAATTGTAAGAGACAAA-T---GTATATA--------C---AATGTC-CA------ATACAAGTATT--AAAG--CTTA-ACCAATAG-AAT-ACA
gi|15 : tttaaacatcttttatttcAATATAAATTAT-ATA-ATTCGTTCCTTTGCGTCTCATCATTGCATAGACAATTTTAAA-C-TA-TACTGATATTACAGTTTACACA--ATCAT-T-----T-TATACTATGTCATTCTACAAAGAATTATAAGAGACAATATGCAACA-ACAG-----TTT---AATATCAAAATAACATTACAA-TAA-----------------------AATCACAATAT------AATACATTTtcgg
gi|16 : acGTTTATTAGAGGTTCATCATA-CAT---CAAT---GAA-CATACTATTTAAATTACAATTTACACA--GATAT-T------ACATACTTTGGCATTCTCTACAGAACTGTAAGAGACACT-T-TGGCA-ATAT-----TTT---AATATCACAGTAATTATGCAA-TACT--AAAA--T--A-ATACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTAAAGccatgtaa
gi|17 : TTATTTGAGTCTCATCATAGCGTACACAAT-CTGAAGTATAA-------AATACAATTTACACA--ATTGT-T------ATATACTATATCATTCTACAAAGAATTGTAAGAGACATT-G-CAGCA-ATACTTTAATTT---AATATCACAGTAACTATACAA-TAAT--AAAA--
gi|18 : caACAATATCAA-TAT---ATATACATTATAAGATACATGTAACGTTAAATAGACCATAAATGCTGTCTATTTTCTTAAAAAGAG--ATCTT----CTTTCAAGAATTAGAAATT-AGAATTTGGCAACTTTGCATATTATATCGTAGTTGGTGAACAACa
gi|19 : AGTCTCAGCATAGCTTATACACTATTTAG-TA-GGCACTTATATTATAATTTAAACA--ATTAT-C------ATATA--------TTCTATACGTAATTATGAGAGACGAC-T-CAGCA-GTAT-----TAC---AATAGCACAGTAACTGTACAA-TA----AAAT--C--ACACACAT
gi|2 : -T-CGGCA-CTAT-----TTT---GATATCACAGTAATTATACAG-AAAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTAGTTAAAAGGTGTACAGCCAT-TGTTAATCCGGACAAAA-GAAGAACATGAATCTTCATTTTATTCATTTGTCTAAAACAGCGA-TGAAATAAGTTCTATTAATCC--ACTACT-TGT-ATAAACCTTA----GC--------NNNNNNNNNNNNNN---N-NNN-NNNNNNN---NNNNN-NNNNNN---NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC-CAATAACAAATAAAACAATATCAATCAT--TATATACGTTATAAGATA------ACGTTAAATAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCTT----CTTTCAAGAATTAGAAAGC-ATATTTTGGCAACTATGCGTATAAGATCGTGGTTAGTGAACAACAAAGTAAGTTTGTTTTCATCTGATAGATTTCTGTAATGCATATCAATTTAAACAG--CTT-TTTCAGTAATTTGTTGTCAAATATCGTTATATAAAGGGTATTTCAATATCACATGTTTCTCGGATTCAACTTGATCACTACAAAAAttata
gi|20 : ATATATAT-ATTATATATTCCTTTATCTGAATATCATCATAGCATACACACCATTAAA-CAC-ATATTTAAAGTTAAATTTACATAATATTATAT-----TATATggacactgtgtttaattggcagtcgttca
gi|21 : attCTCATCATAGCATACATAATATTAAA-CATG-TACTTATAATACAGTTTATACA--GCT-------------------GTCATTCTACATAGAATTGTAAGAGA
gi|23 : aacTTCTTCGATTCAGTTTGATCACTACAAAAA
gi|3 : -T-----TATATACTATGTCATTCTATACAGAATTTTAAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTCTCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAA-GAAGAACACGAATCTGCATTTTATTTATTTATCTAAAACTTATT-AAAAATAAGTTCTATTAATCC--AATGTC-TTT-TTAAACTTTA----CC--------AAAAGATCAGAATT---A-AAA-AATATT-------------ATT---C---GCCTCGAA--TAAGATTTGGGACGACCTGATTAACAATGACTACCCATTCACTATTTAAACTTC-CTACAATAATTGAAATAAAATCAAGTAT--TATATAAACATCAAGAT-----------CAAAAAGACCACAAATGTTTTCTATATGCTTAA---GAGAGATCTT----CTTTCAAGAATTAGAAAGG-AGGTTTTGGCAACTATACGTATAAGATCTTGATTGGTGAACAATAAAGTAATGTTGTTTTCATCTGATATGTT----TAATAC-TAT---TTTGTACAGTTCTT-TTTtgacaaagtctttgttcaatacgcagtggttcataccttccagttt
gi|4 : tatatacagtgtctcattcttaatgtatccaggtatatatacgtcaagta-T-----TATAAACAATGTCATTCTACACAGAATTGTAAGAGACAAC-G-AAGCA-ATAT-----TTT---AATATCACAGGAATT---------AT--ACAA--T--A-ACAAA----AA-------AT------AACACA--TAC-ATTCAGAATATAGATA-TCATACACTAACTCGT-TAAAA---------TG-----TCAATTTATTCATTTGTCTAAAACTGGAT-TAAAATAAGCTGTATAGATGT--ACAGTT-TTT-ATCAACTTAA----TC--------AAAAGTCCAGAATT---A-AGA-AATATGT---AAAAGTGTCATT---TATTGCCCAAAA--TCATATTTGGGACAACATGATTAACAATAA----ACATTCACT-CTTAAAATTTACAATAACAAATATAATAATAGCAGGCAT--TATATGCACATGAGGATA------ACGTTAAATAGACCAAATATGTTGTCGTTTTGTTCAAAAAAAGAGATATT----CTTTCAAGAATTCGAAAGTTAGGTTTTAACAACTGTACATATAAGATTTTGGTTGGTGAACAATAAAGAAAATTTGTTTTCATTTGACATATTTCTGTAATGCATATCAATTTGAACAG--TTT-TTTTAATACTAT----TTTAAGACCGTCATAT
gi|5 : ctg-----TATATACTATGTCATTCTATACAGCATTTTCAAAGACAAC-T-CAGCA-ATAT-----TTT---ATTATCACAATTAGCATACAA--------AAA--C--A-ACACGTAC-AATCATACTAT------GA----------------AATATGCACAACGAT-TGTTAATCTAGACAAAAAGAAGAACACGAATCTGCATTTTATTCATTTATCTAAAACTTATT-AAAAATAAATTCTGTTAATCC--ACTGTC-TTT-ATTAACTTTA----TC--------AAAAGCTCAGAATT---C-AAA------------AAAT-ATTATT---C---GCCTCGAA--TCTGATTTGGGACGACCTGATTAACAATGACTACCCATTCGCTATTTAAATTTC-CTATAATAATTGAAATAATATCAAGTAT--TATATAAATACCAAGAT-----------CAAAAAGACCACAAATGTTTTCTATATGCTTAA---GAGAGTTCTT----CTTTCAAGAATTAGAAAGA-AGGTTTTGGCAACTATACATATAAGATCTTGATTGGTGAACAATAAAGTAAGGTTGTTTTCATCTGATAGGTT----TAATGC-TAT---TTTGTACAG--TTC-TTT
gi|6 : CA-ATAT-----TTT---AATAGCACAGTAATTATACAG-TTAT--AAAA--C--A-ACACATAC-AATCACACTAT------AATACACTTACTATGTAAAAGGTGCACAACCAT-TGTTAATCCGGACAAAA-GAAAAACACGAATCTTCATTTTATTCATTTGTCTAAAACAGTAT-TAAAATAAGTTCTGTTAATCC--ACTACT-TTT-ACAAACATTA----GCCGCNNNNNNNNNNNNNNNNNNN---N-NNN-NNNNNNN---NNNNN-NNNNNN---NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCATTCATTACTAAAACTTC-CAATAACACATAAAACAATATCAATCAT--TATATACATTATAAGATA------ACGTTAAGTAGACCATAAATGCTGTCTATTTGCTTAAAAAGAGAGATCTT----CTTTCAAGAATTAGAAAGC-AGGTTTTGGCAACTATGCGTATAAGATCGTGGTTGGTGAACAACAAAGTAt
gi|7 : cTATTCGTTAATCAGAGTTTCATCA-------------ATTGAA-CATAATACTTATAATACAATT-AAACA--GTT-T-T-----TATATACTATGTCATTCTATACAGAATTGTAAGAGACAAC-T-CGGCA-ATAG-----CT-----------CAGTAATTATACAA-TAATTAAAAA--A--A-ACACATAC-AATCA-------------------TTGCTAGTTAAAATGTGCTGAGCCAT-TGTTAATCTGGACAAAA-GAAGAACATGAATCTTCATTTTCTTCATTTGCCTAAAACAGTAT-AGATATAAGAACTATTAATCC--ACTGCT-TCT-ATAAACTTGA----A---------AAAAGGGCAGAATT---ATAAATTATTTTT---AAAAA-ATCATT---TATTGCCTCAAA--TCCGATTTTTGGCGACCTGATTAACAATGGCTGAACATTCACTACTAAAAGTTC-CAATAACAAATAAAATAATGTCAATCAT--GATA
gi|8 : ---AAAAT-ATCATT---TATTGCC-CAAAAATCATATTTGGGACAATAAGATTAACAATGA-------------AC------------ATAATAAATCGAATAATAGCAGGCCTAATATACACACATCAGGATA------ACGTTAAATAGACCATCTATGTTGTCGTTTTGCTTAAAAAGAGGGATCTA----CTTTCAAGAATTAGAAAGC-AGGTCTTGGCAACTGTAAGTATAAGATCATGGTTGGTGAACAACAAAGTAAGTTTGTTTTCATCTGACATATTTCTGTAAAGCATATCATTTTGAACAG--C-T-TTTCAACAATATTTTGTCTAATGCCGTCATATAAAGG-------------ACATGCTTTTCTGATTCAATAGGGTGACTACAAAAA
gi|9 : aTATAA-GT-ATA-ATTAGTTTATTTCAGTCTCATCATAGTGCATACCTTAGTAAA-CATA-TACTTACTTTTCTGTTTACAAA--CTTAC-C------GTAAACCATGTCATTCTCTACAGAATTGTAAAAGACGAT-G-CAGCG-ACAT-----TGT---AATATCACAGTA------CAA-TG----------C--A-ACATATACTAATAATA-TAC------AATGCACGTTTTGGTTAAAAGAAGCACAGCCGT-TGATGATCTAGACGAAA-AATAAACATG------CATTTTATT--TTTG------ACATTTTATAAAAAAAA----AATAATCCCGATTATT-TTTAATAAACTTAAAAGTGT--------AAAAGAGCAGAACTAAAA-AAA-TATATggcaaactattttttttcaattggctggcgttcattccttccagtttcctac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTAGTTTAAACATATTTTATTTCATATATACATGTATATATATATAGTGATATCATCACAGACTGAAAATAGAGATCATAAC