lowQualScore : 11 11111111 111111111111111 55555555555555555555555555555555555 11 11111111
lowQualScore : 4 88 99999999 3333 6666 000000000000000 22 22 33333333333333333333333333333333333 2 88888 3 22 7 33333333 55 6
lowQualScore : . .. ........ .... .... ............... .. .. ................................... . ..... . .. . ........ .. .
lowQualScore : 2 99 88888888 7777 7777 333333333333333 55 66 11111111111111111111111111111111111 5 88888 6 55 3 22222222 55 0
consensus : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT------A-AAAAA----A----AA---------A-----AAA--A--A------------T----------TAA----AAAT-AAA-AAAGAAT--AA-TT-TTT-TTTT-AAATAAAT--------T--AAAAAAATA
Reference ( gi|6 ) : AAA-CTTTAT-CCAGTATTTCTAAGTAAAACATATTT------G-AAAAA----A----AA---------A-----AAA--A--A------------T----------TAG----AACT-AAA-AAAGAAT--AA-TT-TTG-TTTT-AAATAAAT--------T--AAAAAAACA
gi|2 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT------A-AAAAA----ATTATAAAAATAAAACA-----AAA--A--A------------T----------TGA----AAATAAAA-AAAGAAT---A-TT-TTG-TTTTAAAATAAAT--------T--AAAAAAA
gi|13 : aaAAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT------ATAAAAA----A----AA---------A-----AAG--A--A------------A----------AAGAAAAAATT-AAA-AAAAAAG--AA-aaa
gi|22 : aaAAA-CTTTAA-CCAGTATTTCTAAGTAAAACATTCTT------ATAAAAA----A----AA---------A-----AAA--A--A------------aa
gi|23 : acAAA-CTTTAAACCAGTATTTCTAAGTAAAACATATTT------A-AAAAC----A----GA---------A-----AAA--A--
gi|21 : aaaAAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT------A-AAAAA----G----AA---------A-----AGA--A--A------------
gi|20 : AAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT------A-AAAAA----G----AA---------A-----AGA--A--A------------aaaa
gi|25 : AAA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT------A-TAAAA----A----Aaaaa
gi|16 : aaAAA-ATTCAA-CCATTATTTCTAAGTAGAACATATTT------A-AAAAAAAAGA----AA---------A-----AAA--A--A------------T----------TAA----AA---AAA-AAAGAA
gi|19 : aaAAA-CTTTAA-CCAGTATTTCTAAGTAAAACATAAGT------A-AAAAT----A----AA---------T-----AAA--A--A------------T----------AAA----AAag
gi|14 : aAAA-ATTTAA-CCAGTATTTCTAAGTTAAACATATTTATAAAAG-AAAAA----AGAT-AA---------A-----ACA--A--A------------T----------TAA----AA---AAA-AAAGAAaa
gi|26 : AAA-CTTTAA-CCAGTATTTCTTAGTTAAACATATTT------a
gi|10 : AA-CTTTAA-TCAGAATTTCTAAGTAAAACATATTT------A-AAAAA----A----AA---------A-----AGA-----------------------------------------AAA-AAAGAAT--GA-TT-TTT-TTTTAAAATAAAT--------T--AAAAAAAatacaaa
gi|3 : acAG-CTTTAA-CCAGTATTTCTAGGTAAAACATATTT------A-AAAAA----A----AA---------A-----AAA--ATTA------------T----------TAA----AAATAAAA-AAAGAATAAAA-AT-TTA---TT-AAATAAATAATAATAAT--AAAAAAAg
gi|4 : AA-CTTTAA-CCAGTATTCCTAAGTAAAACA-ATTT------T-AAAAA----T----AA---------A-----AAA--A--A------------TAAATAAATCATAA----AAAT-AAA-AAAAGAT---T-TT-TTT-TTTT-AAATAAAT--------TTGAAAAAAaaa
gi|18 : aaaacAA-CTTTAA-CCATTATTTCTAAGTAAAACATATTT-----------AA----A----AA---------A-----ATT--A--A------------T----------TAA----AAAT-AAA-AAA
gi|7 : A-CTTTAA-CCAGTATTTTTAAGTAAAACATATTT------ATAAAAA----A----AAT--------A-----AAA--A--A------------------------AA----AAAT--AA-AAAGAAT--AA-AT-TTGTTTTT-AAATAAAT--------T--AAAAAAAa
gi|5 : cA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT------A-AAAAA----A----AA---------ATAAAGAAA--A--A------------T-----------------AAAG-AAA-AAGGAAT--AA-AT-GTT-TTTT-AAATAAAT--------T--AAAAAAATa
gi|12 : A-CTTTAA-ACAGCATTTCTAAGTAAAACATATT------------AA----A----AA---------C-----AAA--A--A------------C----------T-G----AAT---------GA----AA-TT-TTT-TTTT-AAATAAAT--------T--AAAAAAAaaa
gi|17 : A-TTTTAA-CCAGTATTTCTAAGTAAAACATGTTT---------------------------------------AAA--A--A------------T-----------------AA---AAA-AAAGAAT--AA-TTCTTT-TTTT-AAATAAAT--------aaagt
gi|24 : TTTAA-CCAGTATTTTTAAGTAAAACATATTT------T-AAAAA----A----AA---------T-----AAA--
gi|9 : TAA-CCAATATTTCTAAGTAAAAGATATTT------A-AAAAA----A----AA---------A-----AA------------------------------TAA----AATA-AAA-AAATAAT--AATTT-TTA-TTTT-AAATAGAT--------T--AAAAAAAtaa
gi|8 : aacAATATTTCTAAGTAAAACATATTT------A-AAAAA----A----AA---------A-------------------------------------TA----------AAA-AAAGAAT---T-TT-TTT-TTTT-TAATAAAT--------T--AAAAAAA
gi|11 : AATATTTCTAAGTAAAACAAATTT------A-AAAAA----A----AA---------C-----AAA--A--A------------A----------CAA----ATCT-AAA-AATAAAT--AA-gaaaagtattcagattctgca
gi|1 : TATTTCTAAGTAAAACATATTT------C-AAAAA----A----AA---------A-----AAATTA--AAAAATAGAAAGGT----------TAA----AAAT-AAACAAAGAAT--AATTT-TTT-TTTT-AAATAAAT--------T--AAAAAAAaaaaaggaaaagtactcagcatctgcat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATTTTATTTAAAAAATAACAAAAAAAAAAATTTAAAAAAAAAGAATAACTTTTTTTTTAAATAAATAAAAAAAAA
Alignments
lowQualScore : 111111 111111111 222222222222 11111111
lowQualScore : 4 1 000000 3333 3333 111111111 66666666 22 666666666666 44444444 2 2 3 3 77 3 55
lowQualScore : . . ...... .... .... ......... ........ .. ............ ........ . . . . .. . ..
lowQualScore : 0 8 333333 5555 5555 666666666 66666666 66 666666666666 55555555 5 7 1 3 99 3 00
consensus : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
Reference ( family-3659 ) : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
gi|1 : TATTTCTAAGTAAAACATATTTCAAAA-AAAAA----A----AATT-------AAA--------AA--ATAGAAAGGT--TAAAAA--T----AAACAAAG-AAT-AATT-TTTTT-TTT-AAATAAATT--AAAAAAA
gi|10 : ataAA-CTTTAA-TCAGAATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAG--------A----------------------------AAA-AAAG-AAT-GATT-TTT--TTTTAAAATAAATT--AAAAAAAaagaaaagtactcagcatctacat
gi|12 : acA-CTTTAA-ACAGCATTTCTAAGTAAAACATATT----------AA----A----AA---------CAA--------AA--AC----------T--GAA--T----GA-----------AATT-TTT--TTTT-AAATAAATT--AAAAAAAg
gi|13 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTTATA-A-AAAAA----A----AA---------AGA--------AA--AA----------GAAAAAATT----AAA-AAAA-AAG-AAaaagt
gi|14 : aaAAA-ATTTAA-CCAGTATTTCTAAGTTAAACATATTT----ATAAAAG----A----AA---------AAAGATAAAACAA--AT----------TAAAA--------AAA-AAAG-AAaa
gi|16 : AAA-ATTCAA-CCATTATTTCTAAGTAGAACATATTT----A-AAAAAAAAGA----AA---------AAA--------AA--AT----------TAAAA--------AAA-AAAG-AAa
gi|17 : aaA-TTTTAA-CCAGTATTTCTAAGTAAAACATGTTT----A-AAAA------------------------------------------------TAA----------AAA-AAAG-AAT-AATTCTTT--TTTT-AAATAAATag
gi|18 : AA-CTTTAA-CCATTATTTCTAAGTAAAACATATTT---------AA----A----AA---------AAT--------TA--AT----------TAAAAA--T----AAA-AAA
gi|19 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATAAGT----A-AAAAT----A----AA---------TAA--------AA--AT----------AAAAAA--a
gi|2 : aAAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----ATTATAAAAATAAAACAAA--------AA--AT----------TGAAAA--TA---AAA-AAAG-AAT-ATTT-TGT--TTTA-AAATAAATT--AAAAAAAa
gi|20 : aaAAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----G----AA---------AAG--------AA--A------------AAAAaaa
gi|21 : AAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----G----AA---------AAG--------AA--A------------AAAA
gi|22 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATTCTT----ATAAAAA----A----AA---------AAA--------AA--A
gi|23 : acAAA-CTTTAAACCAGTATTTCTAAGTAAAACATATTT----A-AAAAC----A----GA---------AAA--------AA--
gi|24 : aaaTTTAA-CCAGTATTTTTAAGTAAAACATATTT----T-AAAAA----A----AA---------TAA--------A
gi|25 : AAA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT----A-TAAAA----A----Ataa
gi|26 : aaAAA-CTTTAA-CCAGTATTTCTTAGTTAAACATATTT----A-TACAA----A----
gi|3 : AG-CTTTAA-CCAGTATTTCTAGGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AATTAT----------TAAAAA--TA---AAA-AAAG-AAT-AAAA-ATT--TATT-AAATAAATA--ATAATAATA
gi|4 : AA-CTTTAA-CCAGTATTCCTAAGTAAAACA-ATTT----T-AAAAA----T----AA---------AAA--------AA--ATAAATAAATCATAAAAA--T----AAA-AAAA-GAT--TTT-TTT--TTTT-AAATAAATTTGAAAAAAaaaaaaaaa
gi|5 : aaaacA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT----A-AAAAA----A----AA---------ATA--------AA--G------------AAAAA--TAAAGAAA-AAGG-AAT-AAAT-GTT--TTTT-AAATAAATT--AAAAAAATA
gi|6 : AAA-CTTTAT-CCAGTATTTCTAAGTAAAACATATTT----G-AAAAA----A----AA---------AAA--------AA--AT----------TAGAAC--T----AAA-AAAG-AAT-AATT-TTG--TTTT-AAATAAATT--AAAAAAACAaaa
gi|7 : A-CTTTAA-CCAGTATTTTTAAGTAAAACATATTT----ATAAAAA----A----AAT--------AAA--------AA--A------------AAAAA--T-----AA-AAAG-AATAAATT-TGT--TTTT-AAATAAATT--AAAAAAA
gi|8 : cAATATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------A--------------------------TA-----------AAA-AAAG-AAT--TTT-TTT--TTTT-TAATAAATT--AAAAAAAa
gi|9 : TAA-CCAATATTTCTAAGTAAAAGATATTT--------AAA----A----AA---------AAA--------AA--AT------------AAAA--T----AAA-AAAATAAT-AATT-TTTA-TTTT-AAATAGATT--AAAAAAAgaaaagtattcagattctgca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AATATTTCTAAGTAAAACAAATTTAAAAAAAAACAAAAAACAAATCTAAAAATAAATAAAAAAAGGAAAAGTACTCAGCATCTGCAT
Unaligned ( gi|15 ): ATTTTATTTAAAAAATAACAAAAAAAAAAATTTAAAAAAAAAGAATAACTTTTTTTTTAAATAAATAAAAAAAAA
Alignments
lowQualScore : 111111 111111111 222222222222 11111111
lowQualScore : 4 1 000000 3333 3333 111111111 66666666 22 666666666666 44444444 2 2 3 3 77 3 55
lowQualScore : . . ...... .... .... ......... ........ .. ............ ........ . . . . .. . ..
lowQualScore : 0 8 333333 5555 5555 666666666 66666666 66 666666666666 55555555 5 7 1 3 99 3 00
consensus : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
Reference ( family-3659 ) : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
gi|1 : TATTTCTAAGTAAAACATATTTCAAAA-AAAAA----A----AATT-------AAA--------AA--ATAGAAAGGT--TAAAAA--T----AAACAAAG-AAT-AATT-TTTTT-TTT-AAATAAATT--AAAAAAA
gi|10 : ataAA-CTTTAA-TCAGAATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAG--------A----------------------------AAA-AAAG-AAT-GATT-TTT--TTTTAAAATAAATT--AAAAAAAaagaaaagtactcagcatctacat
gi|12 : acA-CTTTAA-ACAGCATTTCTAAGTAAAACATATT----------AA----A----AA---------CAA--------AA--AC----------T--GAA--T----GA-----------AATT-TTT--TTTT-AAATAAATT--AAAAAAAg
gi|13 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTTATA-A-AAAAA----A----AA---------AGA--------AA--AA----------GAAAAAATT----AAA-AAAA-AAG-AAaaagt
gi|14 : aaAAA-ATTTAA-CCAGTATTTCTAAGTTAAACATATTT----ATAAAAG----A----AA---------AAAGATAAAACAA--AT----------TAAAA--------AAA-AAAG-AAaa
gi|16 : AAA-ATTCAA-CCATTATTTCTAAGTAGAACATATTT----A-AAAAAAAAGA----AA---------AAA--------AA--AT----------TAAAA--------AAA-AAAG-AAa
gi|17 : aaA-TTTTAA-CCAGTATTTCTAAGTAAAACATGTTT----A-AAAA------------------------------------------------TAA----------AAA-AAAG-AAT-AATTCTTT--TTTT-AAATAAATag
gi|18 : AA-CTTTAA-CCATTATTTCTAAGTAAAACATATTT---------AA----A----AA---------AAT--------TA--AT----------TAAAAA--T----AAA-AAA
gi|19 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATAAGT----A-AAAAT----A----AA---------TAA--------AA--AT----------AAAAAA--a
gi|2 : aAAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----ATTATAAAAATAAAACAAA--------AA--AT----------TGAAAA--TA---AAA-AAAG-AAT-ATTT-TGT--TTTA-AAATAAATT--AAAAAAAa
gi|20 : aaAAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----G----AA---------AAG--------AA--A------------AAAAaaa
gi|21 : AAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----G----AA---------AAG--------AA--A------------AAAA
gi|22 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATTCTT----ATAAAAA----A----AA---------AAA--------AA--A
gi|23 : acAAA-CTTTAAACCAGTATTTCTAAGTAAAACATATTT----A-AAAAC----A----GA---------AAA--------AA--
gi|24 : aaaTTTAA-CCAGTATTTTTAAGTAAAACATATTT----T-AAAAA----A----AA---------TAA--------A
gi|25 : AAA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT----A-TAAAA----A----Ataa
gi|26 : aaAAA-CTTTAA-CCAGTATTTCTTAGTTAAACATATTT----A-TACAA----A----
gi|3 : AG-CTTTAA-CCAGTATTTCTAGGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AATTAT----------TAAAAA--TA---AAA-AAAG-AAT-AAAA-ATT--TATT-AAATAAATA--ATAATAATA
gi|4 : AA-CTTTAA-CCAGTATTCCTAAGTAAAACA-ATTT----T-AAAAA----T----AA---------AAA--------AA--ATAAATAAATCATAAAAA--T----AAA-AAAA-GAT--TTT-TTT--TTTT-AAATAAATTTGAAAAAAaaaaaaaaa
gi|5 : aaaacA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT----A-AAAAA----A----AA---------ATA--------AA--G------------AAAAA--TAAAGAAA-AAGG-AAT-AAAT-GTT--TTTT-AAATAAATT--AAAAAAATA
gi|6 : AAA-CTTTAT-CCAGTATTTCTAAGTAAAACATATTT----G-AAAAA----A----AA---------AAA--------AA--AT----------TAGAAC--T----AAA-AAAG-AAT-AATT-TTG--TTTT-AAATAAATT--AAAAAAACAaaa
gi|7 : A-CTTTAA-CCAGTATTTTTAAGTAAAACATATTT----ATAAAAA----A----AAT--------AAA--------AA--A------------AAAAA--T-----AA-AAAG-AATAAATT-TGT--TTTT-AAATAAATT--AAAAAAA
gi|8 : cAATATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------A--------------------------TA-----------AAA-AAAG-AAT--TTT-TTT--TTTT-TAATAAATT--AAAAAAAa
gi|9 : TAA-CCAATATTTCTAAGTAAAAGATATTT--------AAA----A----AA---------AAA--------AA--AT------------AAAA--T----AAA-AAAATAAT-AATT-TTTA-TTTT-AAATAGATT--AAAAAAAgaaaagtattcagattctgca
blockSeqs : T A ATAA AAAG TTAT AAATAAAAC GATAAAAC TT TAAATAAATCAT ATAAAG . T A C A A TG
blockSeqs : T . AT . . T . . CT AATT . . . . . . .
blockSeqs : . . AT . . . . . AG ATA . . . . . . .
blockSeqs : . . AT . . . . . TT ATA . . . . . . .
blockSeqs : . . A . . . . . TT AT . . . . . . .
blockSeqs : . . A . . . . . TT AT . . . . . . .
blockSeqs : . . A . . . . . TA AT . . . . . . .
blockSeqs : . . A . . . . . TT CT . . . . . . .
blockSeqs : . . A . . . . . TT AT . . . . . . .
blockSeqs : . . A . . . . . TT AT . . . . . . .
blockSeqs : . . A . . . . . T . . . . . . .
blockSeqs : . . A . . . . . T . . . .
blockSeqs : . . T . . . . . T . . .
blockSeqs : . . A . . . . . . . . .
blockSeqs : . . A . . . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . G . . . . .
blockSeqs : . A . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : A***** ********* TT********** **
originalCons : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
finalCons : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTTA-----AAAAA----A----AA---------AAA--------AA--ATT----------AAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AATATTTCTAAGTAAAACAAATTTAAAAAAAAACAAAAAACAAATCTAAAAATAAATAAAAAAAGGAAAAGTACTCAGCATCTGCAT
Unaligned ( gi|15 ): ATTTTATTTAAAAAATAACAAAAAAAAAAATTTAAAAAAAAAGAATAACTTTTTTTTTAAATAAATAAAAAAAAA
Alignments
lowQualScore : 111111 111111111 222222222222 11111111
lowQualScore : 4 1 000000 3333 3333 111111111 66666666 22 666666666666 44444444 2 2 3 3 77 3 55
lowQualScore : . . ...... .... .... ......... ........ .. ............ ........ . . . . .. . ..
lowQualScore : 0 8 333333 5555 5555 666666666 66666666 66 666666666666 55555555 5 7 1 3 99 3 00
consensus : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
Reference ( family-3659 ) : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AA--AT----------TAAAAA--T----AAA-AAAG-AAT-AATT-TTT--TTTT-AAATAAATT--AAAAAAATA
gi|1 : TATTTCTAAGTAAAACATATTTCAAAA-AAAAA----A----AATT-------AAA--------AA--ATAGAAAGGT--TAAAAA--T----AAACAAAG-AAT-AATT-TTTTT-TTT-AAATAAATT--AAAAAAA
gi|10 : ataAA-CTTTAA-TCAGAATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------AAG--------A----------------------------AAA-AAAG-AAT-GATT-TTT--TTTTAAAATAAATT--AAAAAAAaagaaaagtactcagcatctacat
gi|12 : acA-CTTTAA-ACAGCATTTCTAAGTAAAACATATT----------AA----A----AA---------CAA--------AA--AC----------T--GAA--T----GA-----------AATT-TTT--TTTT-AAATAAATT--AAAAAAAg
gi|13 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTTATA-A-AAAAA----A----AA---------AGA--------AA--AA----------GAAAAAATT----AAA-AAAA-AAG-AAaaagt
gi|14 : aaAAA-ATTTAA-CCAGTATTTCTAAGTTAAACATATTT----ATAAAAG----A----AA---------AAAGATAAAACAA--AT----------TAAAA--------AAA-AAAG-AAaa
gi|16 : AAA-ATTCAA-CCATTATTTCTAAGTAGAACATATTT----A-AAAAAAAAGA----AA---------AAA--------AA--AT----------TAAAA--------AAA-AAAG-AAa
gi|17 : aaA-TTTTAA-CCAGTATTTCTAAGTAAAACATGTTT----A-AAAA------------------------------------------------TAA----------AAA-AAAG-AAT-AATTCTTT--TTTT-AAATAAATag
gi|18 : AA-CTTTAA-CCATTATTTCTAAGTAAAACATATTT---------AA----A----AA---------AAT--------TA--AT----------TAAAAA--T----AAA-AAA
gi|19 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATAAGT----A-AAAAT----A----AA---------TAA--------AA--AT----------AAAAAA--a
gi|2 : aAAA-CTTTAA-CCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----ATTATAAAAATAAAACAAA--------AA--AT----------TGAAAA--TA---AAA-AAAG-AAT-ATTT-TGT--TTTA-AAATAAATT--AAAAAAAa
gi|20 : aaAAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----G----AA---------AAG--------AA--A------------AAAAaaa
gi|21 : AAATCTTTAA-TCAGTATTTCTAAGTAAAACATATTT----A-AAAAA----G----AA---------AAG--------AA--A------------AAAA
gi|22 : AAA-CTTTAA-CCAGTATTTCTAAGTAAAACATTCTT----ATAAAAA----A----AA---------AAA--------AA--A
gi|23 : acAAA-CTTTAAACCAGTATTTCTAAGTAAAACATATTT----A-AAAAC----A----GA---------AAA--------AA--
gi|24 : aaaTTTAA-CCAGTATTTTTAAGTAAAACATATTT----T-AAAAA----A----AA---------TAA--------A
gi|25 : AAA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT----A-TAAAA----A----Ataa
gi|26 : aaAAA-CTTTAA-CCAGTATTTCTTAGTTAAACATATTT----A-TACAA----A----
gi|3 : AG-CTTTAA-CCAGTATTTCTAGGTAAAACATATTT----A-AAAAA----A----AA---------AAA--------AATTAT----------TAAAAA--TA---AAA-AAAG-AAT-AAAA-ATT--TATT-AAATAAATA--ATAATAATA
gi|4 : AA-CTTTAA-CCAGTATTCCTAAGTAAAACA-ATTT----T-AAAAA----T----AA---------AAA--------AA--ATAAATAAATCATAAAAA--T----AAA-AAAA-GAT--TTT-TTT--TTTT-AAATAAATTTGAAAAAAaaaaaaaaa
gi|5 : aaaacA-CTTTAA-CCAGTATTTCTAAGTTAAACATATTT----A-AAAAA----A----AA---------ATA--------AA--G------------AAAAA--TAAAGAAA-AAGG-AAT-AAAT-GTT--TTTT-AAATAAATT--AAAAAAATA
gi|6 : AAA-CTTTAT-CCAGTATTTCTAAGTAAAACATATTT----G-AAAAA----A----AA---------AAA--------AA--AT----------TAGAAC--T----AAA-AAAG-AAT-AATT-TTG--TTTT-AAATAAATT--AAAAAAACAaaa
gi|7 : A-CTTTAA-CCAGTATTTTTAAGTAAAACATATTT----ATAAAAA----A----AAT--------AAA--------AA--A------------AAAAA--T-----AA-AAAG-AATAAATT-TGT--TTTT-AAATAAATT--AAAAAAA
gi|8 : cAATATTTCTAAGTAAAACATATTT----A-AAAAA----A----AA---------A--------------------------TA-----------AAA-AAAG-AAT--TTT-TTT--TTTT-TAATAAATT--AAAAAAAa
gi|9 : TAA-CCAATATTTCTAAGTAAAAGATATTT--------AAA----A----AA---------AAA--------AA--AT------------AAAA--T----AAA-AAAATAAT-AATT-TTTA-TTTT-AAATAGATT--AAAAAAAgaaaagtattcagattctgca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AATATTTCTAAGTAAAACAAATTTAAAAAAAAACAAAAAACAAATCTAAAAATAAATAAAAAAAGGAAAAGTACTCAGCATCTGCAT
Unaligned ( gi|15 ): ATTTTATTTAAAAAATAACAAAAAAAAAAATTTAAAAAAAAAGAATAACTTTTTTTTTAAATAAATAAAAAAAAA