lowQualScore : 1111 44444444 111111 11111111111 333333333333333 11111111111111 11 11111 111 1 2 1 22222222
lowQualScore : 1 3 666 2 4 888 0 5555 44444444 555555 22222222222 2 000000000000000 44444444444444 555 2 2 11 2 33 55555 33 44 66 1 2 111 99999 4 8888 4 1 1 2 4 2 3 0 22 5 2 2 22222222 33 7777
lowQualScore : . . ... . . ... . .... ........ ...... ........... . ............... .............. ... . . .. . .. ..... .. .. .. . . ... ..... . .... . . . . . . . . .. . . . ........ .. ....
lowQualScore : 4 6 444 8 9 888 8 8888 33333333 999999 77777777777 7 333333333333333 00000000000000 999 4 4 22 4 22 77777 22 11 99 0 2 666 22222 2 9999 2 8 2 1 2 1 2 3 99 2 1 2 77777777 11 8888
consensus : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCG-G-CTGTTTTCCAAGTTCTA-----------T-TT--------A---AT-GTTTCA-NT---T-------ATTTA-A-TA-TACCT-TTC--T-T--CATNA---C--AGGATGGTAAAGTTG-CCTTTAAGACCAGA--GAGACA---T-CAAACT-GT----TTGG-CAGATGCTGCTGTATCCAGAAC-GAAT-AT-TACCAT--GGCTACG-CGG-TA--TNCG--G--A----TGAATACAGGTATGCTTT
Reference ( gi|7 ) : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACTTTCACGTATTAAAACGACAGTAACTGTTATTTTT-G-CTGTTTTCCAAGTTCTA-----------T-TT--------A---AT-GTTTCA-AT---T-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGACGATAACATTG-CCTTTAAGACCAGG--GAGACA---C-CAAACT-GT----TTGG-CAGGTGCTGCTGTATCCAGTAC-GAAT-AT-T-CTAT--GTCTACG-CAG-TA--TGCT--G--A----TGAATACAGGTATGCTTT
gi|5 : AAACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTTACTATTATTTTG-A-TTGTTTTCCAAGTTCTA-----------T-TT--------A---AG-GTTTTA-AT---A-------ATTTA-A-TA-TACCT-TTT--T-T--CAAAA---C--AGGACAATAACATTG-CCTTTAAGACCAGA--GAGACA---C-CAAACT-GT----TTGG-CAGGTGCTGCTGTATCCAGTAC-GAAT-AT-T-CTAT--GGCTACG-CGG-TA--TGCG--G--A----TGAATACAGGTATGCTTT
gi|6 : ttAAACAAAAAAACAAAAT-A---AACAATACATGATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTAACTGTAATTTTG-A-TTGTTTTCCAAGTTCTA-----------T-TA--------A---AG-GTTTTA-AT---T-------ATTTA-A-TA-TACTT-TTC--T-T--CATAA---C--AGGATGATAAAATTG-CCTCCAAGACCAGA--GAGACA---C-CAAACT-GT----TTGG-CAGGTGCTGCTGTATCCAGTAC-GAAT-AT-T-CTAT--GGCTACG-CGG-TA--TGCT--G--A----TGAATACAGGTATGCTTT
gi|13 : tAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTACAGA-AAATACTGTCACGTATTAAAACGACAGTAACTGTTATTTTT-G-CTGTTTTCCAAGTTCTA-----------T-TT--------G---AT-GTTTTG-AT---T-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGATGATAACATTG-CCTTTAGGACCAGA--AAGACA---C-CAAACT-GC----TTGG-AAGGTGCTGCTGTATCCAGTAC-TAAT-AT-T-CTAT--GGCTACG-a
gi|9 : tAAACAACAAAACAAATT-A---TACATTACATAATATAAAGTTA----------------CGTGTTAAAAC-----TG-CTGTTATTTTG-T-TTGTTTTCCAAATTCTA-----------T-TT--------A---TG-GTATCA-TT---T-------ATTTA-G-TAATACCT-TTC--T-A--CATTA---C--AGAGTGGTTAAGTTG-CCTTTAAGACCAGA--GAGCCG---T-CAAACT-GT----TTGG-CAGAT--T----TATCCGAAAC-AAAT-AT-TACCAT--GACTACA-CGG-TA--TGTG--G--A----TGA
gi|10 : aacgtattatcatttgtgaaaatagaacaaAAAAAAAAAAAAAAAATTA---AACACTACATGGGAT-AAGTTATAAA-ACATACTT---------AAAA----AATA--TGTTATTTCG-T-CAGTTTTCCAAATTCTA-----------T-TT-------------TCGATTTA-ATG--T-------ATTTC-A-TT-TACAT-TTGG-T-T--CATCATTCC--AGTGTGGAAACGTGG-CCTGTAAAACCAGA--TAGACA---T-CACAAT-GT----TTGA-CAGATGCTGCTGTATCCAGAAC-GATT-AT-TACCAT--AGTTACG-CGG-TA--TTGT--G--A----TGAATA
gi|11 : attaaAACAACAAAACAAAAT-G---TACGA-------------------------TACTGTCACGTATTAAAACGACAGTAACTGTTATTTTT-G-CTGTTTTCCAAGTTCTA-----------T-TT--------A---AT-GTTTCA-AT---T-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGATGATAACATTT-CCTTTAAGACCAGA--AAGTCA-----CAAACT-GT----TTGG-CAGGTGCTGCTGTATCCAGTAA-GAAT-AT-T-CTAT--GTCTACG-CGG-TA--TGCG--G--A----TGAATACAGGTATGCTTT
gi|3 : AACAACAAAACAAATT-A---ATCACTATATAATGTTAAGTTATCAA-ATATACCGTCATGTATTAAAACGAT--TACGTTCTATTTTT-G---GTT----AAGCCTTA-----------T------------------GT------------------ATTTT-A-CA-TGATT-CTG--T-T--CATTC---C--AG-----TGAAAGTGTCCTGTAAAATCAGA--GGGACA---C-CACAAT-GT----TTGA-CATATTCTCCTGTATTCAGAAC-GAAT-AT-CACCAT--GGCAACG-CGG-TA--TTTT--G--A----TGAATACAGGTATTCTTT
gi|8 : actaaatcaaggttgcaattatttgtcatataaaaactgttttagaatatattagtcatcattttaaataaatattccaaactaaactgccatagatctagatctatcactgcattgatcaaaacttatttcactgaaactgcatttagagaacataatgtatcactatttgtgaagaaaaaataaacaaacgACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAACACTGGCACGTATTAAAACTACAGTAACTGTTATTTTG-A-TTGTTTTCCAAGTTTTA-----------T-TT--------A---AT-GTTTCA-AT---T-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGACGATAACATTG-CCTTTAAGACCAGG--GAGACA---C-CAAACT-GT----TTGG-CAGGTGCTGCTGTATCCAGTAC-GAAT-AT-T-CTAT--GTCTACG-CGG-TA--TACA--G--A----TGAATACAGGTATGCTTTac
gi|2 : AATAAAA-AAAAT-A---TACAATAAATGATGTTAAGTTATAAACAAACAGCGTAACGTATTAAAAC-----TA-CTGTTATTTCC-A-TT-TTTTTTATGTTCTA-----------T-TTTCGATTACATGTAT-GTGTC---T---TGC-----ATGTACA-AA-TACCT-ACC--TGT--CATTT---C--AGGATGATAAAGCGG-CTTGTACAATCAGATAGAAAGA---CGCAGATTTGTAAGATTGG-CAGATGCCTATATATACAGAAC-GAAT-AT-TACCAT--GGCTACG-CAG-TA----CTTGG--A----TGAATACAGGTAT
gi|1 : cgtgttgatagactgacatgacatgacatctaaatcaaaaccaaccaactattcttactaatattttagcgttttaaacagatcattatgcttcagtatcactgcattaaccacatcgtatttcatataaactgcattgagagattataacttataccataaaacaaaaacaacaaaaatatattAATAAAA-ATAAT-A---TACAATAAATGATGTTAAATTATAAACAAACAGCGTTATGTATTAAAAC-----TA-CTGTTATTTCC-A-TTGTTTTTCAAATTTTAGATCAATTACAT-TT--------AT--GT-GTCTTACATGTAC-------ATGTACA-AG-TACCTATCC--G-T--CATTT---C--AGGATGGTAAAGTAG-CTTCCACAATCAGA--TAGACAGACT-CAGATTTGTCAGATTGG-TAGATGTCGCTGTATACAGAAC-GAAT-AT-TAGTAT--GGCTACT-CAG-TACTTG----G--A----TGAATACAGGTATTCCTTtcc
gi|12 : catgttgattaactgacattacatgacatctaaatctaaaccaatcaattattcgtcaaatacaaactattcttactaatttttcagcattttatacaaatcattatgcttcaatatcactgcaataaccacacaatatttaatatatatgtaaactgcataaagagatcataacttacattgtaataccataaaatgaaaacagaaaaaatatgttACAAAAT-AGCCTGCACTA-ATAATGTTAA--TATAAT-AAA-----------ATTGGAAC------AACTGTTATTT-----CTGTTTTCT--GTTTTA-----------T-T----------------ATTTCA-TT---T-------ACCTG-GCTA-TGGTT-TTCATT-T--CTTAA---TTTAGGTTGGGAAAGTGG-CTTTTACGACCAGA--GAGACA---T-CAAAC--AT----TTGAATAGATGTTGATGTATCCAG-ACGGAAT-GT-TACCAT--GGGGATA-AGA-TA--TTTG--G--A----TGAATAAAGGTATGGTTg
gi|18 : aacccAAGTTATA-A-AAATAACGCCACTTAT-AAAAC-----TA-CTGTTATTTCG-T-ATGTTTTCCAAATTGAA-----------T-TC--------C---CG-GCGTCA-TC---T-------TTTTA-A-TA-TACCT-TT---T-T--CATTA---C--AGGGCGATAACGTTG-CCTTGAAGATTAGA--CGGACG---T-CAAAC
gi|4 : CACGTATAAAAAC-----TG-CTGT-ATTTTTCGTCTGTTTTCCAAATTCTG-----------T-CT--------T---AC-GTT-CA-TT---TGGCTCACATGTA-AATG-TACCT-GTCA-T-T--CATTC---C--AGG-TGGTAAAGTTG-CCCATACGACCAG---------------AAACT-------TTGA-CTGAAGTTGCTGTATACAGAAC-AAAT-AT-TACCAT--GGTAACG-CAG-TA--TTTG--G--A----TGAACACAGGTAT-CTT
gi|15 : actgacgttcaatgacaactaaactaaaaccaacctatcattcgtcaattacaaaaaaatcgtatatattcaccatatttaactaaacaaaatcactatactttaatcatcactgcattaaccacacagtagttaatataaactgcagtgagagagtataacataacttattaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagcgcGTATTAAAAC-----TA-CTGTTATTTCG-G-CT----------TTCTG-----------TGTT-------------T-GCTT----T---C-------ATTTA---TA-TAATT-TTCATT-T--TGTAATTCC--AGAATGGGAAAGTGG-CCTTTAAAACCAGA--GAGACA---T-CAAAAT-GT----TTGA-CAAATGCTGCTGTATCCAGATC-GAAT-AT-CACCAT--GGCTACG-CGG-TA----CT--GGAA----TAACTACAGGTATga
gi|14 : gttaatgaaatgttTTGAAACTACAGTTACTGTTCTTTCT-A-CT----------TTCGG-----------T-TT--------G---TG-GTTTCA-TT---T-------ATATC-A-TT-TACAA-TTC--T-T--AATTT---T--AGGATGAGAAAGCGG-ACTTTACGACCATT--GAGATC---T-AAAACT-GT----TTGG-CAGATGTTGCTGCATCCAGGCG-GAAT-ATAA-CCAT--G-----G-CAATTA--TTTTC-G--A----TAAATAAAGGTATGATTTtattt
gi|16 : taaaaaagcatattatatT--------A---TT-ATTTCG-GT---T-------ATT---G-TT-TTCAT-TTC--T-T--AATT----T--AGGATGGGAAAGTGG-CTTTTACGACCAGT--GAGATG---T-TAAAC--AT----TTGAACAGATGTTGATGTATCCAGGCG-GAATAAT-A-CCATGGGGATATGACAT-T---TG----G--A----TGAATAAAGGTATGGTTTaca
gi|17 : tgttaatataataaaactaaaacaacTTCA-TT---T-------ATTTG-A-TA-TTCTT-TTT--T-TTTCATTA---C--AGGGTGATTAGGTTG-TCCTGGAGACCATA--GAGACA---T-CAAATT-GT----GTGA-CAGATGTTGCTGTATCCAGAAC-GAATAAT-T-TAAT--GGCTTCA-CGG-TA--TG-T--G--AAT--TGAATACAGGTATGCTTT
gi|22 : attctattttcggtttgaaa-CCTTTAAGGTCAGC--GAGACC---T-GAAACT-GC----TTGG-CGGATACTGCTGCATCCAGAAC-AAAT-AT-TACCAT--G-----G-CAA-T-----CA--G--AGAGGTGAATACAGGTATata
gi|20 : ttAAGCT-GT----TTGA-CAGATGGCGCTCTATCCAGAAC-GAAT-AT-TACTAT--AGCTGCG-CAG-TA--TTTG--G--A----TGAATACAGGTATGCTTTt
gi|19 : ttcgttacagggtggttaagcgatctgtaagAAGCT-CT----TTGA-AAGATGGCACTCTATCCATAAC-GACA-AT-TACTAT--GGCTGCA-CAG-TA--TTTG--G--A----TGAATACAGGTATGCTTTa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TTTACAAATAAGTCATCATTTTAAACTAAATATATCAACTAAACTGCCATATCACTGCATTAATCAAACGTTTTGTCACAGAAACTGCATCGAGAGATCATGATGTAT
Alignments
lowQualScore : 44444444 11111111111 22222222222222 1111111
lowQualScore : 0 3 555 3 666 1 55 22222222 77 0 11111111111 2 33333333333333 2 1 1111111 4 4 2 2 77 2 22 66666 22 0 0 0 4 44444 5555 4 8888 2 2 0 22 5 0 22 33 2
lowQualScore : . . ... . ... . .. ........ .. . ........... . .............. . . ....... . . . . .. . .. ..... .. . . . . ..... .... . .... . . . .. . . .. .. .
lowQualScore : 4 3 888 7 777 9 55 88888888 77 7 99999999999 5 33333333333333 4 0 9999999 4 4 2 2 11 0 88 66666 88 5 5 1 4 77777 6666 0 5555 0 0 3 88 7 2 99 44 1
consensus : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGNCTGTTTTCCAAGTTCTA-----------T-TT--------A---ATG-TTTCATTT-------ATTTA-A-TA-TACCT-TTC--T-T--CATTA---C--AGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACA---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA-TGAATACAGGTATGCTTT
Reference ( family-3651 ) : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGGCTGTTTTCCAAGTTCTA-----------T-TT--------A---ATG-TTTCANTT-------ATTTA-A-TA-TACCT-TTC--T-T--CATNA---C--AGGATGGTAAAGTTGCCTTTAAGACCAGA----GAGACA---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TNCGGA-TGAATACAGGTATGCTTT
gi|1 : AATAAAA-ATAAT-A---TACAATAAATGATGTTAAATTATAAACAAACAGCGTTATGTATTAAAAC-----TA-CTGTTATTTCCATTGTTTTTCAAATTTTAGATCAATTACAT-TT--------AT--GTG-TCTTACATGTAC---ATGTACA-AG-TACCTATCC--G-T--CATTT---C--AGGATGGTAAAGTAGCTTCCACAATCAGA----TAGACAGACTCAGATTTGTCAGATTG-G-TAGATGTCGCTGTATACAGAACGAATA--TTAGTATGGCTACTCAGTA--CTTGGA-TGAATACAGGTATTCCTT
gi|10 : catgttgattaactgacattacatgacatctaaatctaaaccaatcaattattcgtcaaatacaaactattcttactaatttttcagcattttatacaaatcattatgcttcaatatcactgcaataaccacacaatatttaatatatatgtaaactgcataaagagatcataacttacattgtaataccataaaatgaaaacagaaaaaatatgttAAAAAAAAAAAAAAAATTA---AACACTACATGGGAT-AAGTTATAAA-ACATAC---------TTAAAA----AATA--TGTTATTTCGTCAGTTTTCCAAATTCTA-----------T-TT--------T---CGA-TTTAATGT-------ATTTC-A-TT-TACAT-TTGG-T-T--CATCATTCC--AGTGTGGAAACGTGGCCTGTAAAACCAGA----TAGACA---TCACAAT-GT----TTG-A-CAGATGCTGCTGTATCCAGAACGATTA--TTACCATAGTTACGCGGTA--TTGTGA-TGAATAg
gi|11 : attaaAACAACAAAACAAAAT-G---TACGATAC-------------------------TGTCACGTATTAAAACGACAGTAACTGTTATTTTTGCTGTTTTCCAAGTTCTA-----------T-TT--------A---ATG-TTTCAATT-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGATGATAACATTTCCTTTAAGACCAGA----AAGTCA----CAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTAAGAATA--TT-CTATGTCTACGCGGTA--TGCGGA-TGAATACAGGTATGCTTT
gi|12 : ACAAAAT-AGCCTGCACTA-ATAATGTTAA--TATAAT-AAA-----------ATTGGAAC-A-----ACTGTTATTTC---TGTTTTCT--GTTTTA-----------T-T---------------A-TTTCATTT-------ACCTG-GCTA-TGGTT-TTCATT-T--CTTAA---TTTAGGTTGGGAAAGTGGCTTTTACGACCAGA----GAGACA---TCAAAC--AT----TTGAA-TAGATGTTGATGTATCCAGACGGAATG--TTACCATGGGGATAAGATA--TTTGGA-TGAATAAAGGTATGGTT
gi|13 : aacccAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTACAGA-AAATACTGTCACGTATTAAAACGACAGTAACTGTTATTTTTGCTGTTTTCCAAGTTCTA-----------T-TT--------G---ATG-TTTTGATT-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGATGATAACATTGCCTTTAGGACCAGA----AAGACA---CCAAACT-GC----TTG-G-AAGGTGCTGCTGTATCCAGTACTAATA--TT-CTATGGCTACG
gi|14 : tTTGAAACTACAGTTACTGTTCTTTCTACT----------TTCGG-----------T-TT--------G---TGG-TTTCATTT-------ATATC-A-TT-TACAA-TTC--T-T--AATTT---T--AGGATGAGAAAGCGGACTTTACGACCATT----GAGATC---TAAAACT-GT----TTG-G-CAGATGTTGCTGCATCCAGGCGGAATA--TAACCATGGCAAT----TATTTTC-GA-TAAATAAAGGTATGATTT
gi|15 : taaaaaagcatattatatGTATTAAAAC-----TA-CTGTTATTTCGGCT----------TTCTG-----------TGTT-------------TGCTTTCATTT-------ATATA-A-TT-TTCAT-TTT--G-T--AATTC---C--AGAATGGGAAAGTGGCCTTTAAAACCAGA----GAGACA---TCAAAAT-GT----TTG-A-CAAATGCTGCTGTATCCAGATCGAATA--TCACCATGGCTACGCGGTA--CTGGAA-TAACTACAGGTATaca
gi|16 : gttaatgaaatgttTAATAAAACTAAAACAACTATTATTTCGGTTATTtattt
gi|16 : tgttaataT--------A---TTA-TTTCGGTT-------ATT---G-TT-TTCAT-TTC--T-T--AATT----T--AGGATGGGAAAGTGGCTTTTACGACCAGT----GAGATG---TTAAAC--AT----TTG-AACAGATGTTGATGTATCCAGGCGGAATA--ATACCATGGGGATATGACA--TTTGGA-TGAATAAAGGTATGGTTTgttttcatttcttaatttaggatgggaaagtggcttttacgaccagtgagatgttaaacatttgaacagatgttgatgtatccaggcggaataataccatggggatatgacatttggatgaataaaggtatggttt
gi|17 : tgttaatataataaaactaaaacaacTTCATTT-------ATTTG-A-TA-TTCTT-TTT--T-TTTCATTA---C--AGGGTGATTAGGTTGTCCTGGAGACCATA----GAGACA---TCAAATT-GT----GTG-A-CAGATGTTGCTGTATCCAGAACGAATAATTTA--ATGGCTTCACGGTA--TGTGAATTGAATACAGGTATGCTTT
gi|18 : attctattttcggtttgaaaAAGTTATA-A-AAATAACGCCACTTAT-AAAAC-----TA-CTGTTATTTCGTATGTTTTCCAAATTGAA-----------T-TC--------C---CGG-CGTCATCT-------TTTTA-A-TA-TACCT-TT---T-T--CATTA---C--AGGGCGATAACGTTGCCTTGAAGATTAGA----CGGACG---TCAAACata
gi|19 : -T--CATTC---C--AGGGTGGTATAGT---------GACCTG---------TA---TGAAGCT-CT----TTG-A-AAGATGGCACTCTATCCATAACGACAA--TTACTATGGCTGCACAGTA--TTTGGA-TGAATACAGGTATGCTTT
gi|2 : AATAAAA-AAAAT-A---TACAATAAATGATGTTAAGTTATAAACAAACAGCGTAACGTATTAAAAC-----TA-CTGTTATTTCCATT-TTTTTTATGTTCTA-----------T-TTTCGATTACATGTATG-TGTCTTGC-------ATGTACA-AA-TACCT-ACC--TGT--CATTT---C--AGGATGATAAAGCGGCTTGTACAATCAGATAGAAAGACG----CAGATTTGTAAGATTG-G-CAGATGCCTATATATACAGAACGAATA--TTACCATGGCTACGCAGTA--CTTGGA-TGAATACAGGTATacaa
gi|20 : cgtgttgatagactgacatgacatgacatctaaatcaaaaccaaccaactattcttactaatattttagcgttttaaacagatcattatgcttcagtatcactgcattaaccacatcgtatttcatataaactgcattgagagattataacttataccataaaacaaaaacaacaaaaatatatt--T-T--CGTTA---C--AGGGTGGTTAAGCGATCTGTAAGA---------------------AGCT-GT----TTG-A-CAGATGGCGCTCTATCCAGAACGAATA--TTACTATAGCTGCGCAGTA--TTTGGA-TGAATACAGGTATGCTTTtcc
gi|22 : CCTTTAAGGTCAGC----GAGACC---TGAAACT-GC----TTG-G-CGGATACTGCTGCATCCAGAACAAATA--TTACCATGGCAAT-CAG-----AGAGG-TGAATACAGGTATa
gi|3 : ttAACAACAAAACAAATT-A---ATCACTATATAATGTTAAGTTATCAA-ATATACCGTCATGTATTAAAAC-G-ATTA--CGTT-------CTATTTT--------TG-----------G-TT--------A---A-G-CCTTATGT-------ATTTT-A-CA-TGATT-CTG--T-T--CATTC---C--AG--TG--AAAGTGTCCTGTAAAATCAGA----GGGACA---CCACAAT-GT----TTG-A-CATATTCTCCTGTATTCAGAACGAATA--TCACCATGGCAACGCGGTA--TTTTGA-TGAATACAGGTATTCTTTt
gi|4 : actaaatcaaggttgcaattatttgtcatataaaaactgttttagaatatattagtcatcattttaaataaatattccaaactaaactgccatagatctagatctatcactgcattgatcaaaacttatttcactgaaactgcatttagagaacataatgtatcactatttgtgaagaaaaaataaacaaacgCGCCACGTATAAAAACTGCTGTA----TT-TTTCGTCTGTTTTCCAAATTCTG-----------T-CT--------T---ACG-TT-CATTTGGCTCACATGTA-AATG-TACCT-GTCA-T-T--CATTC---C--AGG-TGGTAAAGTTGCCCATACGACCAGA----------------AACT-------TTG-A-CTGAAGTTGCTGTATACAGAACAAATA--TTACCATGGTAACGCAGTA--TTTGGA-TGAACACAGGTAT-CTTac
gi|5 : actgacgttcaatgacaactaaactaaaaccaacctatcattcgtcaattacaaaaaaatcgtatatattcaccatatttaactaaacaaaatcactatactttaatcatcactgcattaaccacacagtagttaatataaactgcagtgagagagtataacataacttattaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagAAACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTTACTATTATTTTGATTGTTTTCCAAGTTCTA-----------T-TT--------A---AGG-TTTTAATA-------ATTTA-A-TA-TACCT-TTT--T-T--CAAAA---C--AGGACAATAACATTGCCTTTAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCGGA-TGAATACAGGTATGCTTTga
gi|6 : ttAAACAAAAAAACAAAAT-A---AACAATACATGATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTAACTGTAATTTTGATTGTTTTCCAAGTTCTA-----------T-TA--------A---AGG-TTTTAATT-------ATTTA-A-TA-TACTT-TTC--T-T--CATAA---C--AGGATGATAAAATTGCCTCCAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCTGA-TGAATACAGGTATGCTTT
gi|7 : tAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACTTTCACGTATTAAAACGACAGTAACTGTTATTTTTGCTGTTTTCCAAGTTCTA-----------T-TT--------A---ATG-TTTCAATT-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCAGTA--TGCTGA-TGAATACAGGTATGCTTTa
gi|8 : ACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAACACTGGCACGTATTAAAACTACAGTAACTGTTATTTTGATTGTTTTCCAAGTTTTA-----------T-TT--------A---ATG-TTTCAATT-------ATTTA-A-TA-TACCT-TTC--T-T--CATAA---C--AGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCGGTA--TACAGA-TGAATACAGGTATGCTTT
gi|9 : AAACAACAAAACAAATT-A---TACATTACATAATATAAAGTTA----------------CGTGTTAAAAC-----TG-CTGTTATTTTGTTTGTTTTCCAAATTCTA-----------T-TT--------A---TGG-TATCATTT-------ATTTA-G-TAATACCT-TTC--T-A--CATTA---C--AGAGTGGTTAAGTTGCCTTTAAGACCAGA----GAGCCG---TCAAACT-GT----TTG-G-CAGAT--T----TATCCGAAACAAATA--TTACCATGACTACACGGTA--TGTGGA-TGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTACAAATAAGTCATCATTTTAAACTAAATATATCAACTAAACTGCCATATCACTGCATTAATCAAACGTTTTGTCACAGAAACTGCATCGAGAGATCATGATGTAT
Alignments
lowQualScore : 44444444 22222222222222 11111111111
lowQualScore : 0 3 555 3 666 1 55 66666666 666 0 5 00000000000000 2 1 7777777 55555 22222222222 4 55 55555 2 4444 2 2 22 5 0 0 0 1 0 44444 5555 4 8888 2 2 0 22 5 22 1 6666
lowQualScore : . . ... . ... . .. ........ ... . . .............. . . ....... ..... ........... . .. ..... . .... . . .. . . . . . . ..... .... . .... . . . .. . .. . ....
lowQualScore : 4 3 888 7 777 9 55 55555555 999 4 0 11111111111111 4 0 2222222 66666 88888888888 4 33 66666 2 7777 1 0 88 8 5 5 1 0 9 77777 6666 0 5555 0 0 3 88 7 99 1 6666
consensus : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGN-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACG---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
Reference ( family-3651 ) : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGN-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTACAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACA---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
gi|1 : AATAAAA-ATAAT-A---TACAATAAATGATGTTAAATTATAAACAAACAGCGTTATGTATTAAAAC-----TA-CTGTTATTTCCA-TTGTTTTTCAAATTTTAGATC--------A---AT---TACATTT-------ATGTGTCTTACATGTACATGTA-CAAGTA-----CCTATC----C-G-T--CATTTCAGGATGGTAAAGTAGCTTCCACAATCAGA----TAGACAGACTCAGATTTGTCAGATTG-G-TAGATGTCGCTGTATACAGAACGAATA--TTAGTATGGCTACTCAGTA--CTTGGA----TGAATACAGGTATTCCTT
gi|10 : catgttgattaactgacattacatgacatctaaatctaaaccaatcaattattcgtcaaatacaaactattcttactaatttttcagcattttatacaaatcattatgcttcaatatcactgcaataaccacacaatatttaatatatatgtaaactgcataaagagatcataacttacattgtaataccataaaatgaaaacagaaaaaatatgttAAAAAAAAAAAAAAAATTA---AACACTACATGGGAT-AAGTTATAAA-ACATAC---------TTAAAA----AATA--TGTTATTTCGT-CAGTTTTCCAAATTCTAT-TT--------T---CGA-TTTAATGT-------AT-----TTC-----------A-TT--TA-----CAT-TTGGTTC-A-T--CATTCCAGTGTGGAAACGTGGCCTGTAAAACCAGA----TAGACA---TCACAAT-GT----TTG-A-CAGATGCTGCTGTATCCAGAACGATTA--TTACCATAGTTACGCGGTA--TTGTGA----TGAATAg
gi|11 : attaaAACAACAAAACAAAAT-G---TACGATAC-------------------------TGTCACGTATTAAAACGACAGTAACTGTTATTTTTG-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGATGATAACATTTCCTTTAAGACCAGA----AAGTCA----CAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTAAGAATA--TT-CTATGTCTACGCGGTA--TGCGGA----TGAATACAGGTATGCTTT
gi|12 : ACAAAAT-AGCCTGCACTA-ATAATGTTAA--TATAAT-AAA-----------ATTGGAAC-A-----ACTGTTATTTC----TGTTTTCT--GTTTTAT-T---------------A-TTTCATTT-------AC-----CTG-----------GCTA--TGGTTTTCAT-TT----C-T-T--AATT-TAGGTTGGGAAAGTGGCTTTTACGACCAGA----GAGACA---TCAAAC--AT----TTGAA-TAGATGTTGATGTATCCAGACGGAATG--TTACCATGGGGATAAGATA--TTTGGA----TGAATAAAGGTATGGTT
gi|13 : aacccAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTACAGA-AAATACTGTCACGTATTAAAACGACAGTAACTGTTATTTTTG-CTGTTTTCCAAGTTCTAT-TT--------G---ATG-TTTTGATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGATGATAACATTGCCTTTAGGACCAGA----AAGACA---CCAAACT-GC----TTG-G-AAGGTGCTGCTGTATCCAGTACTAATA--TT-CTATGGCTACG
gi|14 : tTTGAAACTACAGTTACTGTTCTTTCTA-CT----------TTCGGT-TT--------G---TGG-TTTCATTT-------AT-----ATC-----------A-TT--TA-----CAA-TT----C-T-T--AATTTTAGGATGAGAAAGCGGACTTTACGACCATT----GAGATC---TAAAACT-GT----TTG-G-CAGATGTTGCTGCATCCAGGCGGAATA--TAACCATGGCAAT----TATTTTC-GA----TAAATAAAGGTATGATTT
gi|15 : taaaaaagcatattatatGTATTAAAAC-----TA-CTGTTATTTCGG-CT----------TTCTGTGTT-------------TGCTTTCATTT-------AT-----ATA-----------A-TT--TT-----CAT-TT----T-G-T--AATTCCAGAATGGGAAAGTGGCCTTTAAAACCAGA----GAGACA---TCAAAAT-GT----TTG-A-CAAATGCTGCTGTATCCAGATCGAATA--TCACCATGGCTACGCGGTA--CTGGAA----TAACTACAGGTATaca
gi|16 : gttaatgaaatgttT--------A---TTA-TTTCGGTT-------AT-----T-------------G-TT--TT-----CAT-TT----C-T-T--AATT-TAGGATGGGAAAGTGGCTTTTACGACCAGT----GAGATG---TTAAAC--AT----TTG-AACAGATGTTGATGTATCCAGGCGGAATA--ATACCATGGGGATATGACA--TTTGGA----TGAATAAAGGTATGGTTTtattt
gi|17 : tgttaatataataaaactaaaacaacTTCATTT-------AT-----TTG-----------A-TA--TT-----CTT-TT----T-T-TTTCATTACAGGGTGATTAGGTTGTCCTGGAGACCATA----GAGACA---TCAAATT-GT----GTG-A-CAGATGTTGCTGTATCCAGAACGAATAATTTA--ATGGCTTCACGGTA--TGTGAAT---TGAATACAGGTATGCTTT
gi|18 : attctattttcggtttgaaaAAGTTATA-A-AAATAACGCCACTTAT-AAAAC-----TA-CTGTTATTTCGT-ATGTTTTCCAAATTGAAT-TC--------C---CGG-CGTCATCT-------TT-----TTA-----------A-TA--TA-----CCT-TT------T-T--CATTACAGGGCGATAACGTTGCCTTGAAGATTAGA----CGGACG---TCAAACata
gi|19 : -T--CATTCCAGGGTGGTATAGTGACCTGTA---------------------TGAAGCT-CT----TTG-A-AAGATGGCACTCTATCCATAACGACAA--TTACTATGGCTGCACAGTA--TTTGGA----TGAATACAGGTATGCTTT
gi|2 : AATAAAA-AAAAT-A---TACAATAAATGATGTTAAGTTATAAACAAACAGCGTAACGTATTAAAAC-----TA-CTGTTATTTCCA-TT-TTTTTTATGTTCTAT-TTTCGATTACATGTATG-TGTCTTGC-------AT-----GTAC----------A-AA--TA-----CCT-AC----C-TGT--CATTTCAGGATGATAAAGCGGCTTGTACAATCAGATAGAAAGACG----CAGATTTGTAAGATTG-G-CAGATGCCTATATATACAGAACGAATA--TTACCATGGCTACGCAGTA--CTTGGA----TGAATACAGGTATacaa
gi|20 : cgtgttgatagactgacatgacatgacatctaaatcaaaaccaaccaactattcttactaatattttagcgttttaaacagatcattatgcttcagtatcactgcattaaccacatcgtatttcatataaactgcattgagagattataacttataccataaaacaaaaacaacaaaaatatatt-T-T--CGTTACAGGGTGGTTAAGCGATCTGTAAGA---------------------AGCT-GT----TTG-A-CAGATGGCGCTCTATCCAGAACGAATA--TTACTATAGCTGCGCAGTA--TTTGGA----TGAATACAGGTATGCTTTtcc
gi|22 : CCTTTAAGGTCAGC----GAGACC---TGAAACT-GC----TTG-G-CGGATACTGCTGCATCCAGAACAAATA--TTACCATGGCAA----------TCAGAGAGGTGAATACAGGTATa
gi|3 : ttAACAACAAAACAAATT-A---ATCACTATATAATGTTAAGTTATCAA-ATATACCGTCATGTATTAAAAC-G-----------ATTACGTTCTATTTT--------TGG-TT--------A---A-G-CCTTATGT-------AT-----TTT-----------A-CA--TG-----ATT-CT----G-T-T--CATTCCAG--TG--AAAGTGTCCTGTAAAATCAGA----GGGACA---CCACAAT-GT----TTG-A-CATATTCTCCTGTATTCAGAACGAATA--TCACCATGGCAACGCGGTA--TTTTGA----TGAATACAGGTATTCTTTt
gi|4 : actaaatcaaggttgcaattatttgtcatataaaaactgttttagaatatattagtcatcattttaaataaatattccaaactaaactgccatagatctagatctatcactgcattgatcaaaacttatttcactgaaactgcatttagagaacataatgtatcactatttgtgaagaaaaaataaacaaacgCGCCACGTATAAAAACTGCTGTA----TT-TTTCGT-CTGTTTTCCAAATTCTGT-CT--------T---ACG-TT-CATTTGGCTCACAT-----GTA-----------AATG--TA-----CCT-GT----CAT-T--CATTCCAGG-TGGTAAAGTTGCCCATACGACCAGA----------------AACT-------TTG-A-CTGAAGTTGCTGTATACAGAACAAATA--TTACCATGGTAACGCAGTA--TTTGGA----TGAACACAGGTAT-CTTac
gi|5 : actgacgttcaatgacaactaaactaaaaccaacctatcattcgtcaattacaaaaaaatcgtatatattcaccatatttaactaaacaaaatcactatactttaatcatcactgcattaaccacacagtagttaatataaactgcagtgagagagtataacataacttattaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagAAACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTTACTATTATTTTGA-TTGTTTTCCAAGTTCTAT-TT--------A---AGG-TTTTAATA-------AT-----TTA-----------A-TA--TA-----CCT-TT----T-T-T--CAAAACAGGACAATAACATTGCCTTTAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCGGA----TGAATACAGGTATGCTTTga
gi|6 : ttAAACAAAAAAACAAAAT-A---AACAATACATGATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTAACTGTAATTTTGA-TTGTTTTCCAAGTTCTAT-TA--------A---AGG-TTTTAATT-------AT-----TTA-----------A-TA--TA-----CTT-TT----C-T-T--CATAACAGGATGATAAAATTGCCTCCAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCTGA----TGAATACAGGTATGCTTT
gi|7 : tAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACTTTCACGTATTAAAACGACAGTAACTGTTATTTTTG-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCAGTA--TGCTGA----TGAATACAGGTATGCTTTa
gi|8 : ACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAACACTGGCACGTATTAAAACTACAGTAACTGTTATTTTGA-TTGTTTTCCAAGTTTTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCGGTA--TACAGA----TGAATACAGGTATGCTTT
gi|9 : AAACAACAAAACAAATT-A---TACATTACATAATATAAAGTTA----------------CGTGTTAAAAC-----TG-CTGTTATTTTGT-TTGTTTTCCAAATTCTAT-TT--------A---TGG-TATCATTT-------AT-----TTA-----------G-TAA-TA-----CCT-TT----C-T-A--CATTACAGAGTGGTTAAGTTGCCTTTAAGACCAGA----GAGCCG---TCAAACT-GT----TTG-G-CAGAT--T----TATCCGAAACAAATA--TTACCATGACTACACGGTA--TGTGGA----TGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTACAAATAAGTCATCATTTTAAACTAAATATATCAACTAAACTGCCATATCACTGCATTAATCAAACGTTTTGTCACAGAAACTGCATCGAGAGATCATGATGTAT
Alignments
lowQualScore : 44444444 22222222222222 11111111111 11111
lowQualScore : 0 3 555 3 666 1 55 66666666 666 0 5 00000000000000 2 1 7777777 55555 22222222222 4 55 55555 2 4444 2 2 22 1 0 0 0 1 0 44444 00000 4 8888 2 2 0 22 5 22 1 6666
lowQualScore : . . ... . ... . .. ........ ... . . .............. . . ....... ..... ........... . .. ..... . .... . . .. . . . . . . ..... ..... . .... . . . .. . .. . ....
lowQualScore : 4 3 888 7 777 9 55 55555555 999 4 0 11111111111111 4 0 2222222 66666 88888888888 4 33 66666 2 7777 1 0 88 0 5 5 1 0 9 77777 77777 0 5555 0 0 3 88 7 99 1 6666
consensus : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGN-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACG---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
Reference ( family-3651 ) : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGN-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACG---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
gi|1 : AATAAAA-ATAAT-A---TACAATAAATGATGTTAAATTATAAACAAACAGCGTTATGTATTAAAAC-----TA-CTGTTATTTCCA-TTGTTTTTCAAATTTTAGATC--------A---AT---TACATTT-------ATGTGTCTTACATGTACATGTA-CAAGTA-----CCTATC----C-G-T--CATTTCAGGATGGTAAAGTAGCTTCCACAATCAGA----TAGACAGACTCAGATTTGTCAGATTG-G-TAGATGTCGCTGTATACAGAACGAATA--TTAGTATGGCTACTCAGTA--CTTGGA----TGAATACAGGTATTCCTT
gi|10 : catgttgattaactgacattacatgacatctaaatctaaaccaatcaattattcgtcaaatacaaactattcttactaatttttcagcattttatacaaatcattatgcttcaatatcactgcaataaccacacaatatttaatatatatgtaaactgcataaagagatcataacttacattgtaataccataaaatgaaaacagaaaaaatatgttAAAAAAAAAAAAAAAATTA---AACACTACATGGGAT-AAGTTATAAA-ACATAC---------TTAAAA----AATA--TGTTATTTCGT-CAGTTTTCCAAATTCTAT-TT--------T---CGA-TTTAATGT-------AT-----TTC-----------A-TT--TA-----CAT-TTGGTTC-A-T--CATTCCAGTGTGGAAACGTGGCCTGTAAAACCAGA----TAGACA---TCACAAT-GT----TTG-A-CAGATGCTGCTGTATCCAGAACGATTA--TTACCATAGTTACGCGGTA--TTGTGA----TGAATAg
gi|11 : attaaAACAACAAAACAAAAT-G---TACGATAC-------------------------TGTCACGTATTAAAACGACAGTAACTGTTATTTTTG-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGATGATAACATTTCCTTTAAGACCAGA----AAGTCA----CAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTAAGAATA--TT-CTATGTCTACGCGGTA--TGCGGA----TGAATACAGGTATGCTTT
gi|12 : ACAAAAT-AGCCTGCACTA-ATAATGTTAA--TATAAT-AAA-----------ATTGGAAC-A-----ACTGTTATTTC----TGTTTTCT--GTTTTAT-T---------------A-TTTCATTT-------AC-----CTG-----------GCTA--TGGTTTTCAT-TT----C-T-T--AATTT-AGGTTGGGAAAGTGGCTTTTACGACCAGA----GAGACA---TCAAAC--AT----TTGAA-TAGATGTTGATGTATCCAGACGGAATG--TTACCATGGGGATAAGATA--TTTGGA----TGAATAAAGGTATGGTT
gi|13 : aacccAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTACAGA-AAATACTGTCACGTATTAAAACGACAGTAACTGTTATTTTTG-CTGTTTTCCAAGTTCTAT-TT--------G---ATG-TTTTGATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGATGATAACATTGCCTTTAGGACCAGA----AAGACA---CCAAACT-GC----TTG-G-AAGGTGCTGCTGTATCCAGTACTAATA--TT-CTATGGCTACG
gi|14 : tTTGAAACTACAGTTACTGTTCTTTCTA-CT----------TTCGGT-TT--------G---TGG-TTTCATTT-------AT-----ATC-----------A-TT--TA-----CAA-TT----C-T-T--AATTTTAGGATGAGAAAGCGGACTTTACGACCATT----GAGATC---TAAAACT-GT----TTG-G-CAGATGTTGCTGCATCCAGGCGGAATA--TAACCATGGCAAT----TATTTTC-GA----TAAATAAAGGTATGATTT
gi|15 : taaaaaagcatattatatGTATTAAAAC-----TA-CTGTTATTTCGG-CT----------TTCTGTGTT-------------TGCTTTCATTT-------AT-----ATA-----------A-TT--TT-----CAT-TT----T-G-T--AATTCCAGAATGGGAAAGTGGCCTTTAAAACCAGA----GAGACA---TCAAAAT-GT----TTG-A-CAAATGCTGCTGTATCCAGATCGAATA--TCACCATGGCTACGCGGTA--CTGGAA----TAACTACAGGTATaca
gi|16 : gttaatgaaatgttT--------A---TTA-TTTCGGTT-------AT-----T-------------G-TT--TT-----CAT-TT----C-T-T--AATTT-AGGATGGGAAAGTGGCTTTTACGACCAGT----GAGATG---TTAAAC--AT----TTG-AACAGATGTTGATGTATCCAGGCGGAATA--ATACCATGGGGATATGACA--TTTGGA----TGAATAAAGGTATGGTTTtattt
gi|17 : tgttaatataataaaactaaaacaacTTCATTT-------AT-----TTG-----------A-TA--TT-----CTT-TT----T-T-TTTCATTACAGGGTGATTAGGTTGTCCTGGAGACCATA----GAGACA---TCAAATT-GT----GTG-A-CAGATGTTGCTGTATCCAGAACGAATAATTTA--ATGGCTTCACGGTA--TGTGAAT---TGAATACAGGTATGCTTT
gi|18 : attctattttcggtttgaaaAAGTTATA-A-AAATAACGCCACTTAT-AAAAC-----TA-CTGTTATTTCGT-ATGTTTTCCAAATTGAAT-TC--------C---CGG-CGTCATCT-------TT-----TTA-----------A-TA--TA-----CCT-TT------T-T--CATTACAGGGCGATAACGTTGCCTTGAAGATTAGA----CGGACG---TCAAACata
gi|19 : -T--CATTCCAGGGTGGTATAGTGACCTGTA---------------------TGAAGCT-CT----TTG-A-AAGATGGCACTCTATCCATAACGACAA--TTACTATGGCTGCACAGTA--TTTGGA----TGAATACAGGTATGCTTT
gi|2 : AATAAAA-AAAAT-A---TACAATAAATGATGTTAAGTTATAAACAAACAGCGTAACGTATTAAAAC-----TA-CTGTTATTTCCA-TT-TTTTTTATGTTCTAT-TTTCGATTACATGTATG-TGTCTTGC-------AT-----GTAC----------A-AA--TA-----CCT-AC----C-TGT--CATTTCAGGATGATAAAGCGGCTTGTACAATCAGATAGAAAGACG----CAGATTTGTAAGATTG-G-CAGATGCCTATATATACAGAACGAATA--TTACCATGGCTACGCAGTA--CTTGGA----TGAATACAGGTATacaa
gi|20 : cgtgttgatagactgacatgacatgacatctaaatcaaaaccaaccaactattcttactaatattttagcgttttaaacagatcattatgcttcagtatcactgcattaaccacatcgtatttcatataaactgcattgagagattataacttataccataaaacaaaaacaacaaaaatatatt-T-T--CGTTACAGGGTGGTTAAGCGATCTGTAAGA---------------------AGCT-GT----TTG-A-CAGATGGCGCTCTATCCAGAACGAATA--TTACTATAGCTGCGCAGTA--TTTGGA----TGAATACAGGTATGCTTTtcc
gi|22 : CCTTTAAGGTCAGC----GAGACC---TGAAACT-GC----TTG-G-CGGATACTGCTGCATCCAGAACAAATA--TTACCATGGCAA----------TCAGAGAGGTGAATACAGGTATa
gi|3 : ttAACAACAAAACAAATT-A---ATCACTATATAATGTTAAGTTATCAA-ATATACCGTCATGTATTAAAAC-G-----------ATTACGTTCTATTTT--------TGG-TT--------A---A-G-CCTTATGT-------AT-----TTT-----------A-CA--TG-----ATT-CT----G-T-T--CATTCCAG--TG--AAAGTGTCCTGTAAAATCAGA----GGGACA---CCACAAT-GT----TTG-A-CATATTCTCCTGTATTCAGAACGAATA--TCACCATGGCAACGCGGTA--TTTTGA----TGAATACAGGTATTCTTTt
gi|4 : actaaatcaaggttgcaattatttgtcatataaaaactgttttagaatatattagtcatcattttaaataaatattccaaactaaactgccatagatctagatctatcactgcattgatcaaaacttatttcactgaaactgcatttagagaacataatgtatcactatttgtgaagaaaaaataaacaaacgCGCCACGTATAAAAACTGCTGTA----TT-TTTCGT-CTGTTTTCCAAATTCTGT-CT--------T---ACG-TT-CATTTGGCTCACAT-----GTA-----------AATG--TA-----CCT-GT----CAT-T--CATTCCAGG-TGGTAAAGTTGCCCATACGACCAGA----------------AACT-------TTG-A-CTGAAGTTGCTGTATACAGAACAAATA--TTACCATGGTAACGCAGTA--TTTGGA----TGAACACAGGTAT-CTTac
gi|5 : actgacgttcaatgacaactaaactaaaaccaacctatcattcgtcaattacaaaaaaatcgtatatattcaccatatttaactaaacaaaatcactatactttaatcatcactgcattaaccacacagtagttaatataaactgcagtgagagagtataacataacttattaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagAAACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTTACTATTATTTTGA-TTGTTTTCCAAGTTCTAT-TT--------A---AGG-TTTTAATA-------AT-----TTA-----------A-TA--TA-----CCT-TT----T-T-T--CAAAACAGGACAATAACATTGCCTTTAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCGGA----TGAATACAGGTATGCTTTga
gi|6 : ttAAACAAAAAAACAAAAT-A---AACAATACATGATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTAACTGTAATTTTGA-TTGTTTTCCAAGTTCTAT-TA--------A---AGG-TTTTAATT-------AT-----TTA-----------A-TA--TA-----CTT-TT----C-T-T--CATAACAGGATGATAAAATTGCCTCCAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCTGA----TGAATACAGGTATGCTTT
gi|7 : tAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACTTTCACGTATTAAAACGACAGTAACTGTTATTTTTG-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCAGTA--TGCTGA----TGAATACAGGTATGCTTTa
gi|8 : ACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAACACTGGCACGTATTAAAACTACAGTAACTGTTATTTTGA-TTGTTTTCCAAGTTTTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCGGTA--TACAGA----TGAATACAGGTATGCTTT
gi|9 : AAACAACAAAACAAATT-A---TACATTACATAATATAAAGTTA----------------CGTGTTAAAAC-----TG-CTGTTATTTTGT-TTGTTTTCCAAATTCTAT-TT--------A---TGG-TATCATTT-------AT-----TTA-----------G-TAA-TA-----CCT-TT----C-T-A--CATTACAGAGTGGTTAAGTTGCCTTTAAGACCAGA----GAGCCG---TCAAACT-GT----TTG-G-CAGAT--T----TATCCGAAACAAATA--TTACCATGACTACACGGTA--TGTGGA----TGA
blockSeqs : T GCC T AAC T CT GACAGTAA GTT G TCGATTACATGTAT C T GGCTCAC . C C A GTTTT . GGTT A G TT C G TAGAA AT T AAGA A A AT A TT G GAGG
blockSeqs : . . C AA T AC GACAGTAA GT . TCG . A . . . A . . . . . . . A T T AT . . . . . A . C T
blockSeqs : . . T AT T GC TACAGTTA TG . AAT . T . . . . . . . . . . . T G A AC . . . . . A . T .
blockSeqs : . . T GA C CC TACAGTTA TG . GAT . A . . . . . . . . . . . A T G CT . . . . . A . C .
blockSeqs : . . C AA T CT TACAGTAA TA . GTG . T . . . . . . . . . . . T G A AT . . . . . A . G .
blockSeqs : . . C GA T CT GACAGTAA GG . ATT . T . . . . . . . . . . . C G G GT . . . . . A . T .
blockSeqs : . . C GA T CT TACAGTAA GT . CCG . G . . . . . . . . . . . T G G AT . . . . . A . T .
blockSeqs : . . C GA T CT TGCTGTA CA . TAC . T . . . . . . . . . . . A T G GT . . . . . A . T .
blockSeqs : . . A GA C C AATA GT . AAG . T . . . . . . . . . . . A T G CT . . . . . A . T .
blockSeqs : . . . A . T AA GA . AAG . T . . . . . . . . . . . C G C AC . . . . . A . T .
blockSeqs : . . . . . . TA GA . AAT . T . . . . . . . . . . . T G G AC . . . . . A . C .
blockSeqs : . . . TA TG . AAT . T . . . . . . . . . . . A G G AC . . . . . A . T .
blockSeqs : TA GA . ATG . A . . . . . . . . . . . C G G AC . . . . . A . T .
blockSeqs : TG GT . AA . A . . . . . . . . . . . C T G AC . . . . . . . C .
blockSeqs : G . . T . A . . . . . . . . . . . A T G GT . . . . . . . C .
blockSeqs : . . A . . . . . . . . . . . A T G A . . . . . . . C .
blockSeqs : T . . . . . . . . . . . A T G T . . . . . . . C .
blockSeqs : . . . A T . G . . . . . . . T .
blockSeqs : . . A T . . . . . . . .
blockSeqs : . .
blockSeqCons : GA* TACAGTA* ***** *********** ** AT*** ****
originalCons : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAAC-ACAGTAACTGTTATTTCGN-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACG---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
finalCons : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAACTACAGTA-CTGTTATTTCGN-CTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACAT---CAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTACAAATAAGTCATCATTTTAAACTAAATATATCAACTAAACTGCCATATCACTGCATTAATCAAACGTTTTGTCACAGAAACTGCATCGAGAGATCATGATGTAT
Alignments
lowQualScore : 3333333 22222222222222 11111111111
lowQualScore : 0 3 555 3 666 1 55 1 2222222 66 0 5 00000000000000 2 1 7777777 55555 22222222222 4 55 55555 2 4444 2 2 22 1 0 0 0 1 0 44444 5555 4 8888 2 2 0 22 5 22 1 6666
lowQualScore : . . ... . ... . .. . ....... .. . . .............. . . ....... ..... ........... . .. ..... . .... . . .. . . . . . . ..... .... . .... . . . .. . .. . ....
lowQualScore : 4 3 888 7 777 9 55 6 4444444 88 4 0 11111111111111 4 0 2222222 66666 88888888888 4 33 66666 2 7777 1 0 88 0 5 5 1 0 9 77777 6666 0 5555 0 0 3 88 7 99 1 6666
consensus : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAACTACAGT-A-CTGTTATTTCGNCTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACG---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
Reference ( family-3651 ) : AAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACCGTCACGTATTAAAACTACAGT-A-CTGTTATTTCGNCTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCATTT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATTNCAGGATGGTAAAGTNGCCTTTAAGACCAGA----GAGACA---TCAAACT-GT----TTG-G-CAGATGCTGCTGTATCCAGAACGAATA--TTACCATGGCTACGCGGTA--TTCGGA----TGAATACAGGTATGCTTT
gi|1 : AATAAAA-ATAAT-A---TACAATAAATGATGTTAAATTATAAACAAACAGCGTTATGTATTAAAACTAC-------TGTTATTTCCATTGTTTTTCAAATTTTAGATC--------A---AT---TACATTT-------ATGTGTCTTACATGTACATGTA-CAAGTA-----CCTATC----C-G-T--CATTTCAGGATGGTAAAGTAGCTTCCACAATCAGA----TAGACAGACTCAGATTTGTCAGATTG-G-TAGATGTCGCTGTATACAGAACGAATA--TTAGTATGGCTACTCAGTA--CTTGGA----TGAATACAGGTATTCCTT
gi|10 : catgttgattaactgacattacatgacatctaaatctaaaccaatcaattattcgtcaaatacaaactattcttactaatttttcagcattttatacaaatcattatgcttcaatatcactgcaataaccacacaatatttaatatatatgtaaactgcataaagagatcataacttacattgtaataccataaaatgaaaacagaaaaaatatgttAAAAAAAAAAAAAAAATTA---AACACTACATGGGAT-AAGTTATAAA-ACATAC---------TTAAAA----AAT-A--TGTTATTTCGTCAGTTTTCCAAATTCTAT-TT--------T---CGA-TTTAATGT-------AT-----TTC-----------A-TT--TA-----CAT-TTGGTTC-A-T--CATTCCAGTGTGGAAACGTGGCCTGTAAAACCAGA----TAGACA---TCACAAT-GT----TTG-A-CAGATGCTGCTGTATCCAGAACGATTA--TTACCATAGTTACGCGGTA--TTGTGA----TGAATAg
gi|11 : attaaAACAACAAAACAAAAT-G---TACGATAC-------------------------TGTCACGTATTAAAACGACAGT-AACTGTTATTTTTGCTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGATGATAACATTTCCTTTAAGACCAGA----AAGTCA----CAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTAAGAATA--TT-CTATGTCTACGCGGTA--TGCGGA----TGAATACAGGTATGCTTT
gi|12 : ACAAAAT-AGCCTGCACTA-ATAATGTTAA--TATAAT-AAA-----------ATTGGAAC---A---A-CTGTTATTTC---TGTTTTCT--GTTTTAT-T---------------A-TTTCATTT-------AC-----CTG-----------GCTA--TGGTTTTCAT-TT----C-T-T--AATTT-AGGTTGGGAAAGTGGCTTTTACGACCAGA----GAGACA---TCAAAC--AT----TTGAA-TAGATGTTGATGTATCCAGACGGAATG--TTACCATGGGGATAAGATA--TTTGGA----TGAATAAAGGTATGGTT
gi|13 : aacccAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTACAGA-AAATACTGTCACGTATTAAAACGACAGT-AACTGTTATTTTTGCTGTTTTCCAAGTTCTAT-TT--------G---ATG-TTTTGATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGATGATAACATTGCCTTTAGGACCAGA----AAGACA---CCAAACT-GC----TTG-G-AAGGTGCTGCTGTATCCAGTACTAATA--TT-CTATGGCTACG
gi|14 : tTTGAAACTACAGTTA-CTGTTCTTTCTACT----------TTCGGT-TT--------G---TGG-TTTCATTT-------AT-----ATC-----------A-TT--TA-----CAA-TT----C-T-T--AATTTTAGGATGAGAAAGCGGACTTTACGACCATT----GAGATC---TAAAACT-GT----TTG-G-CAGATGTTGCTGCATCCAGGCGGAATA--TAACCATGGCAAT----TATTTTC-GA----TAAATAAAGGTATGATTT
gi|15 : taaaaaagcatattatatGTATTAAAACTAC-------TGTTATTTCGGCT----------TTCTGTGTT-------------TGCTTTCATTT-------AT-----ATA-----------A-TT--TT-----CAT-TT----T-G-T--AATTCCAGAATGGGAAAGTGGCCTTTAAAACCAGA----GAGACA---TCAAAAT-GT----TTG-A-CAAATGCTGCTGTATCCAGATCGAATA--TCACCATGGCTACGCGGTA--CTGGAA----TAACTACAGGTATaca
gi|16 : gttaatgaaatgttT--------A---TTA-TTTCGGTT-------AT-----T-------------G-TT--TT-----CAT-TT----C-T-T--AATTT-AGGATGGGAAAGTGGCTTTTACGACCAGT----GAGATG---TTAAAC--AT----TTG-AACAGATGTTGATGTATCCAGGCGGAATA--ATACCATGGGGATATGACA--TTTGGA----TGAATAAAGGTATGGTTTtattt
gi|17 : tgttaatataataaaactaaaacaacTTCATTT-------AT-----TTG-----------A-TA--TT-----CTT-TT----T-T-TTTCATTACAGGGTGATTAGGTTGTCCTGGAGACCATA----GAGACA---TCAAATT-GT----GTG-A-CAGATGTTGCTGTATCCAGAACGAATAATTTA--ATGGCTTCACGGTA--TGTGAAT---TGAATACAGGTATGCTTT
gi|18 : attctattttcggtttgaaaAAGTTATA-A-AAATAACGCCACTTAT-AAAACTAC-------TGTTATTTCGTATGTTTTCCAAATTGAAT-TC--------C---CGG-CGTCATCT-------TT-----TTA-----------A-TA--TA-----CCT-TT------T-T--CATTACAGGGCGATAACGTTGCCTTGAAGATTAGA----CGGACG---TCAAACata
gi|19 : -T--CATTCCAGGGTGGTATAGTGACCTGTA---------------------TGAAGCT-CT----TTG-A-AAGATGGCACTCTATCCATAACGACAA--TTACTATGGCTGCACAGTA--TTTGGA----TGAATACAGGTATGCTTT
gi|2 : AATAAAA-AAAAT-A---TACAATAAATGATGTTAAGTTATAAACAAACAGCGTAACGTATTAAAACTAC-------TGTTATTTCCATT-TTTTTTATGTTCTAT-TTTCGATTACATGTATG-TGTCTTGC-------AT-----GTAC----------A-AA--TA-----CCT-AC----C-TGT--CATTTCAGGATGATAAAGCGGCTTGTACAATCAGATAGAAAGACG----CAGATTTGTAAGATTG-G-CAGATGCCTATATATACAGAACGAATA--TTACCATGGCTACGCAGTA--CTTGGA----TGAATACAGGTATacaa
gi|20 : cgtgttgatagactgacatgacatgacatctaaatcaaaaccaaccaactattcttactaatattttagcgttttaaacagatcattatgcttcagtatcactgcattaaccacatcgtatttcatataaactgcattgagagattataacttataccataaaacaaaaacaacaaaaatatatt-T-T--CGTTACAGGGTGGTTAAGCGATCTGTAAGA---------------------AGCT-GT----TTG-A-CAGATGGCGCTCTATCCAGAACGAATA--TTACTATAGCTGCGCAGTA--TTTGGA----TGAATACAGGTATGCTTTtcc
gi|22 : CCTTTAAGGTCAGC----GAGACC---TGAAACT-GC----TTG-G-CGGATACTGCTGCATCCAGAACAAATA--TTACCATGGCAA----------TCAGAGAGGTGAATACAGGTATa
gi|3 : ttAACAACAAAACAAATT-A---ATCACTATATAATGTTAAGTTATCAA-ATATACCGTCATGTATTAAAACGAT--T-A-C-GTT-------CTATTTT--------TGG-TT--------A---A-G-CCTTATGT-------AT-----TTT-----------A-CA--TG-----ATT-CT----G-T-T--CATTCCAG--TG--AAAGTGTCCTGTAAAATCAGA----GGGACA---CCACAAT-GT----TTG-A-CATATTCTCCTGTATTCAGAACGAATA--TCACCATGGCAACGCGGTA--TTTTGA----TGAATACAGGTATTCTTTt
gi|4 : actaaatcaaggttgcaattatttgtcatataaaaactgttttagaatatattagtcatcattttaaataaatattccaaactaaactgccatagatctagatctatcactgcattgatcaaaacttatttcactgaaactgcatttagagaacataatgtatcactatttgtgaagaaaaaataaacaaacgCGCCACGTATAAAAACTGCTGT-A-TT----TTTCGTCTGTTTTCCAAATTCTGT-CT--------T---ACG-TT-CATTTGGCTCACAT-----GTA-----------AATG--TA-----CCT-GT----CAT-T--CATTCCAGG-TGGTAAAGTTGCCCATACGACCAGA----------------AACT-------TTG-A-CTGAAGTTGCTGTATACAGAACAAATA--TTACCATGGTAACGCAGTA--TTTGGA----TGAACACAGGTAT-CTTac
gi|5 : actgacgttcaatgacaactaaactaaaaccaacctatcattcgtcaattacaaaaaaatcgtatatattcaccatatttaactaaacaaaatcactatactttaatcatcactgcattaaccacacagtagttaatataaactgcagtgagagagtataacataacttattaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagAAACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGTTA-CTATTATTTTGATTGTTTTCCAAGTTCTAT-TT--------A---AGG-TTTTAATA-------AT-----TTA-----------A-TA--TA-----CCT-TT----T-T-T--CAAAACAGGACAATAACATTGCCTTTAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCGGA----TGAATACAGGTATGCTTTga
gi|6 : ttAAACAAAAAAACAAAAT-A---AACAATACATGATGTCAAGTTATAGA-AAATACTGTCACGTATTAAAACTACAGT-AACTGTAATTTTGATTGTTTTCCAAGTTCTAT-TA--------A---AGG-TTTTAATT-------AT-----TTA-----------A-TA--TA-----CTT-TT----C-T-T--CATAACAGGATGATAAAATTGCCTCCAAGACCAGA----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGGCTACGCGGTA--TGCTGA----TGAATACAGGTATGCTTT
gi|7 : tAAACAACAAAACAAAAT-A---TACAATACATGATGTCAAGTTATAGA-AAATACTTTCACGTATTAAAACGACAGT-AACTGTTATTTTTGCTGTTTTCCAAGTTCTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCAGTA--TGCTGA----TGAATACAGGTATGCTTTa
gi|8 : ACAACAAAACAAAAT-A---TACAATACATAATGTCAAGTTATAGA-AAACACTGGCACGTATTAAAACTACAGT-AACTGTTATTTTGATTGTTTTCCAAGTTTTAT-TT--------A---ATG-TTTCAATT-------AT-----TTA-----------A-TA--TA-----CCT-TT----C-T-T--CATAACAGGACGATAACATTGCCTTTAAGACCAGG----GAGACA---CCAAACT-GT----TTG-G-CAGGTGCTGCTGTATCCAGTACGAATA--TT-CTATGTCTACGCGGTA--TACAGA----TGAATACAGGTATGCTTT
gi|9 : AAACAACAAAACAAATT-A---TACATTACATAATATAAAGTTA----------------CGTGTTAAAACTGC-------TGTTATTTTGTTTGTTTTCCAAATTCTAT-TT--------A---TGG-TATCATTT-------AT-----TTA-----------G-TAA-TA-----CCT-TT----C-T-A--CATTACAGAGTGGTTAAGTTGCCTTTAAGACCAGA----GAGCCG---TCAAACT-GT----TTG-G-CAGAT--T----TATCCGAAACAAATA--TTACCATGACTACACGGTA--TGTGGA----TGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTACAAATAAGTCATCATTTTAAACTAAATATATCAACTAAACTGCCATATCACTGCATTAATCAAACGTTTTGTCACAGAAACTGCATCGAGAGATCATGATGTAT