lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111111111 222222222222222222 1111 11111 1 11111111111111 1 1111111 1111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 1 3333 1 111 1 111 222 1 11111 111 222222222 333 1 1111 1 111
lowQualScore : 6 1 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 4 77777 2 111111111111 555 888888888888888888 0 0 4 1 2 0000 4 3 55555 11111 555 4 2 99999999999999 4 6 0 6 6 0000000 0000000 2 7777 4444 555 2 99999 3 44 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 333333 1 2 7777 1 2 1 2 1 555 0 111 333 7 7 4 11111 000 888888888 111 1 7 1 2 1 7777 7 1 1 111 8
lowQualScore : . . . .............................................................................................. . . ..... . ............ ... .................. . . . . . .... . . ..... ..... ... . . .............. . . . . . ....... ....... . .... .... ... . ..... . .. ......................................................................................... . . ...... . . .... . . . . . ... . ... ... . . . ..... ... ......... ... . . . . . .... . . . ... .
lowQualScore : 0 7 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 8 11111 5 888888888888 000 444444444444444444 1 5 7 8 6 4444 0 5 33333 99999 444 5 5 66666666666666 5 7 0 2 7 8888888 8888888 5 1111 2222 888 3 55555 3 77 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 6 000000 7 8 8888 1 6 1 8 7 666 2 333 333 8 3 4 11111 222 000000000 111 1 8 1 6 7 2222 8 1 4 000 0
consensus : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAAA-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTCACATAT--G--C-----CGA---TTCTCGACTTTGGTATCTCAAATATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTTTGAAACCGAACAAANCAAACGAAACGGAA-------ACGAC-------GTCCG----AC----GT---TTGCCCTC----NCGTG-AA-ATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATGTTACACAAAGATTTGGCANAACTGCATGTGCATACATAACAAAAGTCACCGAATTAATCGAA---TATATTTACGTAA-AT-----ATAAAGTT---TTA---CGGTGACTTGTGTTATGTATGCACATCCAATTNTTCCAAATCTTTGTATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
Reference ( gi|3 ) : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCAAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTCATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAAA-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTTATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTCACATAT--G--C-----CGA---TTCTCGATTTAAGTATCTTAAATATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGGAA-------ATGAC-------GTCCG----AC----GT---TTGCCCTC----TCGTG-AA-ATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGTTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAA---TATATTT-CGTAA-AT-----ATAAAGTT---TTA---CGGTG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|4 : GCGTCCTTTTAGTCTGAGCTGTTTATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCCCAGGTGGTTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAAA-----TAGTTCAAATAAA-T--G----A-AACA---AAAT---------------TTAATTCAAACTCGAGAATTGTTAGAAAA--GGGAATTCGAACGACAAAATCGAGATACGTGG--TCTTCAATCATTGATTTATTTTCACATAT--G--C-----CGA---TTCTCGATTTTAGTATCTTAAATATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGGAA-------ATGAC-------GTCCG----AC----GT---TTGCCCTC----TCGTG-AA-ATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTCAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAA---TATATTT-CGTAA-AT-----ATAAAGTT---ATA---CGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTATAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATGTAACTTTCCACAAAGAATAAAAACAGTAAAATGA
gi|5 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGAGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTG----------------GCTAAA-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTCATATAT--G--C-----CGA---TTCTCGATTTTAGTATCTTAAATATATAT--------------ATATAAATCACGACAAGCTCTTT-A-TATAACTTATGAAACCGATCAAACCAAACGAAACGGAA-------ATGAC-------GTCCG----AC----GT---TTGCCCTC----TCGTG-AA-ATTTGACGCCAAAAGAA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTAGCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGTAATACATAATATTAAACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAA---TATATTT-CGTAA-AT-----ATAAAGTT---TTA---CGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAAAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGAc
gi|1 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCTAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATAGCTGAA-----TAGTTAAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTCACATAT--G--C-----CGA---TTTTCGATTTTAGTATCTTAAATATATAT--------------ATA--AATCACGTCAAGCT-TTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGGAA-------ATGAC-------GTCCG----AC----GT---TTGCCCTC----TCGTG-AA-ATTTGAAGCCAAAAGAA-A-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGCCTCTGTTTAAACTTATTAAAATTAAATGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTTATCGAA---AATATTA-CGTAA-AT-----ATAAAGTT---TTA---CGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATTTTAGAACTAA-AAAATATGAATCCAACAGAGACTGGGCTAATCGATAAGCACATTTAATTTT-CACAAAGAACAAAAACAGTAAAATGAc
gi|16 : GCGTCCTTTTAGTCTGAGCTATTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTG-TTGAATTGATTAGTACCGTATGGc
gi|2 : CGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACGGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTTTGGCTAAA-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------CTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTCACATAT--G--C-----CGA---TTCTCGATTTTAGTATCTGAAATATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGGAA-------ATGAC-------GTCCG----AC----GT---TTGCCCTC----TCGTG-AA-ATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTGTCAATGTGAGTTGCACTGGTCTCTGTTTAAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAATTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAA---TATATTT-CGTAA-AT-----ATAAAGTT---TTA---CGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|18 : aTTAGTCAGAGCTGTTAATCTGTTCTTGCGAATTCTGCACAT
gi|7 : AAACGGGCTGGTTCTCTGGTGATTGAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAAA-----TAGTTCAAATAAAAT--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTAATTT-GTTTCACATAT--A--C-----CGA---TTCTCG
gi|9 : AACTGACCCTGGTATACAATTGCTAAA-----TAGGTAAAATAAT-T-----------TG---AA-T---------------TATATATAAAAT--GGTATTG-----AACTCGGCTATTTAAACGA---------GATAAGCGG--TCTTTAATAATTTATTTCTTTTCATATAT--A--CAC---CAA---TTCTCGTCTTCGGTATCTCAAATATA-----------------A-ACAAATCATGTCAAATTCTTA-AAGTTAACTTTTGAAACTGAACAAAACAAACGAAACATAAACGATACACGAC-------ATCAG----ACTCATGT---TTGCTTTC----GCGTG-GC-ATTTGATGCCAAAAG
gi|11 : GACGTTCGTATACAATGACTAAACTATATGGTTCAAATAAT-T--C----A-AGTA---AAAT---------------ATAATTCAAAC------------------TCGAGAATTCGAATGAGATAATCGAGATATG--AAGTCTTGAATAATTTATTCCTTTTCATATATATG--C-----CAA---TTCTCGATTTTGGTACCTCAAATATATAC--------------ATA---A-CACGTCAAGTTCCTC-ACGATAACTTTTGAAAGTGAACAAAACAAACGAAACGGAA-------ATGAC-------GTCAGGAGTAT----GT---TTGCCGTC----GCGTG-AC-ATTTGACGCCAAt
gi|10 : GACACTCGTATGCAATGACTTAA-----TAGTTGAAATAAT-T--C----A-AATA---ATATATACCGGTACCGGGGTTAATTCAAACTCGAGTATTATAAGGAACTCGA-AATTTGAAC-----AAT--------------TCTTCAATCATTTTTTTCTTTTCATTTAA--G--T-----CGA---TTCTCGACTTTGGTATGTCGA----ATAC--------------ATATAAATCACATCAGTTTCTTT-A-AGTA--TTTTGAAACTG---------AATGAAACGGAA-------ACGAC-------ATCAG----ACGTATGT---TTTCCGTC----ATGTG-AT-GTTTGATGCCAAAAG
gi|15 : ACGCTCACATACAATTGCTAAA-----TAGTT---------T--C----A-AATA---AAAT---------------TGTATTCAAGCTCGAGAATTGTAta
gi|6 : CGGTCGTATACTATGGCTAAA-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTAAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGCGGTCTTCAATCATTGATTT-TTTCCACATAT--G--C-----CGA---TTCTCGATTTTAGTATCTTAAATATAT-T--------------ATATAAATCACGTCAAACTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAAAGGAA-------ACGAC-------GTCCG----AC----GT---TTGCCCTC----TCATG-AA-ATTTGACGCCAAAAGAAAN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATCCCTTTATCAATGTGAGTTGCACTGGTCT--GTTTAAACTTATTAAC------TGTTTATAGCAATACATACTATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAA---TATATTA-CGTAA-AT-----ATAAAGTT---TTA---CCATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ACAACATTATGGATTCAATTGAAACTATTTTAGAACT-CAAAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAACAAAAACAGTAAAATGAtaattcttcaataatttatttctctgcattaaaaataactctcgactttgatatctctatacatataaat
gi|12 : TCGTATAAAATGGCTAAA-----TAGTTCATATACG-T--AGTTCA-AATG---ATAT---------------ATGATTCAAACTTGAGAATTATAAGGAACTCAGGAATTCAAATAATATAATCGAGATATGC--GGTCTTCAGTCGTTTATTTCTTT--ACATAT--A--CATGTATGACCTTTCTTGACTTAA-------------ATAT--------------ATATAAATCATGACAAACTCTTTGA-AATAGCTTTTGATGCTGAACGAAACAAACG--ACGGCA---------GAC-------AC-------AT----GT---TTGCGGAC----GTGTG-AC-ATTTGACGCCAAAAc
gi|8 : cGTATACAATGGCTAAA-----TAGTTACAATAAT-TCCG----ATAATACATAAAT---------------ATAATTCAAATT-GAGAACTGTACGGAACTAGGGAATT--------AGAAT-GAGATA-------------ATCATAAATTTCTTTTCTTAAAT--G--T-----TGA---TTCTTGACTTTGGTATCTCAAAAATACATGACTTTTTTTTTGTATATAAATCACGTCAAACACTTT-AAGATAACTTTTGAAACCGAATGAAACAAACTAAAGGGAA-------ACGTT-------GTCAG----AT----GTACATTGATTTCGTCGTCGTGTAACATTTGATGCCAAAA
gi|14 : CTAAGCCTAAA-----TAGTTGAAATAAT-T--A----G-AATA---ATAT---------------ATAATTCAAACTCAAGAATCGTAAAGAACTTGAAAATTTAAACAAGATAATCGAGATATACAGTAT------TCACTTATTT-TTTTC-----------T-----CGA---CTCT--------GTATCTCAAATGTATA-----------------A-AAATCATGTCAAGCCCT------GTAACTTTTGAAACTTTACAAAACAAAAGAGGTGGAA-------GCTAC-------TTCAG----AC----AT---TTGTATGC----CGGCG-AA----TGACGCCAAAA
gi|13 : cttgcatgcaatggATGGCTAAA-----TAGTTCAAATAA--T--G--------TA---TAAT---------------T---------CTCAAAAATGGTAAGGAACTTGGGAATTTAAACAAGAAAATCGAGGTATGCAG--TCTTCAGTAATTTATTTCTTTTCATATAT--ATAC-----CAA---TTCTCGACTTTGGTATCTCAAATATATAT---------------T-TAAATCACGTCAAATTCTTTAA-GATAACTTTTGAAACTGAACAAA-CAAACGAAATGAAA-------ATAACATTAAATGTGC-----AC----AT---TTGCAATC----GCAAG-AT-ATTTGACGCCGAAa
gi|2 : aaAATCCATAATGTTAT-CAAAGATTTGGAAAAATTGGATA-GCATACATAACACA---CATCG---TAA---AACTTTATATTTACG-AA-AT-----ATA---TTCGATTAATTCGGTGACTTTTGTTATGTATGTACATGCAATTATGCTA----TTTGTGTAATATTATGTATTg
gi|4 : acgtccttttagtctgagctgttaatctgttcttgcgagttctgcacataaacgggctggttctctggtgatttaattgattagtaccgtatgggatgtactgattttaccacggggcattagcccgagggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactgacggtcgtatactttggctaaatagttcaaataaatgaaataaaatctaattcaaactcgagaattgtaagaaactcgggaattcgaacgacaaaatcgagatacgcggggtcttcaatcattgatttcttttcacatatgccgattctcgattttagtatctgaaatatatatatataaatcacgtcaagctctttagataacttatgaaaccgaacaaaccaaacgaaacggaaatgacgtccgacgtttgccctctcgtgaaatttgacgccaaaagaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataatacaattcctttgtcaatgtgagttgcactggtctctgtttaaacgtattaactgtttatagcAATCCATAATGTTAT-CAAAGATTTGGAAAAATTGGATA-GCATACATAACACA---CATCGTATAACTT------TATATTTACG-AA-AT-----ATA---TTCGATTAATTCGGTGACTTTTGTTATGTATGTACATGCAGTTATGCTA----TTTGTGTAATATTATGTATTcgattgaaactatattagaactcaaaatatgaatccaaaagagactgggctaatcgataagcacatttaactttcacaaagaataaaaacagtaaaatga
gi|5 : gcgtccttttagtctgagctgtttatctgttcttgcgagttctgcacataaacgggctggttcccaggtggtttaattgattagtaccgtatgggatgtactgattttaccacagggcattagcccgagggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactgacggtcgtatactatggctaaatagttcaaataaatgaaacaaaatttaattcaaactcgagaattgttagaaaagggaattcgaacgacaaaatcgagatacgtggtcttcaatcattgatttattttcacatatgccgattctcgattttagtatcttaaatatatatatataaatcacgtcaagctctttagataacttatgaaaccgaacaaaccaaacgaaacggaaatgacgtccgacgtttgccctctcgtgaaatttgacgccaaaagaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataatacaattcctttatcaatgtgagttgcactggtctctgtttcaacgtattaactgtttatagcAATCCATAATGTTAT-CAAAGATTTGGAAAAATTGGATA-GCATACATAACACA---CATCG---TAA---AACTTTATATTTACG-AA-AT-----ATA---TTCGATTAATTCGGTGACTTTTGTTATGTATGTACATGCAGTTATGCTA----TTTGTTTAATATTATGTATTcgattgaaactatattataactcaaaatatgaatccaaaagagactgggctaatcgataagcacatgtaactttccacaaagaataaaaacagtaaaatgac
gi|1 : gcgtccttttagtctgagctgttaatctgttcttgcgagttctgcacataaacgggctggttctctggtgatttaattgattagtaccgtatgggatgtactgatttcaccacagagcattagcccgagggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactggctaaatagttcaaataaatgaaataaaatttaattcaaactcgagaattgtaagaaactcgggaattcgaacgacaaaatcgagatacgcggggtcttcaatcattgatttcttttcatatatgccgattctcgattttagtatcttaaatatatatatataaatcacgacaagctctttatataacttatgaaaccgatcaaaccaaacgaaacggaaatgacgtccgacgtttgccctctcgtgaaatttgacgccaaaagaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataatacaattcctttagcaatgtgagttgcactggtctctgtttaaacttattaactgtttatagtAATCCATAATGTTAT-CAAAGATTTGGAAAAATTGGATA-GCATACATAACACA---CATCG---TAA---AACTTTATATTTACGTAATATTTTCGATAAA------TT----CGGTGACTTTTGTTATGTATGTACATGCAGTTATGCTA----TTTGTGTAATATTATGTATTcgattgaaactatattaaaactcaaaatatgaatccaaaagagactgggctaatcgataagcacatttaactttcacaaagaataaaaacagtaaaatgac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GCTTGTATACAATGGCTAGATAATTGGGTTATATCGTTTCAAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111111111 11111111111111 1111111 1111111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 8888 33 777 44 4 1
lowQualScore : 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 777777 66666 1 77 8888888 2 444 8888888888888888 3 1 1 888 1 33 66666 33 33 4 2 66666666666666 0 6 9 3 5 3 0000000 0000000 1 6666 77777777777777 2 1 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 999999 6 5555 6 1 6 11 3 000 66 1 0 3 6
lowQualScore : . .............................................................................................. . . ...... ..... . .. ....... . ... ................ . . . ... . .. ..... .. .. . . .............. . . . . . . ....... ....... . .... .............. . . . ......................................................................................... ...... . .... . . . .. . ... .. . . . .
lowQualScore : 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 777777 77777 7 22 1111111 7 777 9999999999999999 6 1 7 555 0 77 77777 77 77 0 9 88888888888888 8 2 2 0 1 1 0000000 0000000 5 5555 88888888888888 1 0 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 0 0000 0 0 0 00 3 000 00 0 0 3 7
consensus : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTT-CGTAAATATAAAGTTTTACGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAGAACTCAAAA-TATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
Reference ( family-353 ) : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTTTGAAACCGAACAAANCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATGTTACACAAAGATTTGGCANAACTGCATGTGCATACATAACAAAAGTCACCGAATTAATCGAATATATTTACGTAAATATAAAGTTTTACGGTGACTTGTGTTATGTATGCACATCCAATTNTTCCAAATCTTTGTATAACATTATGGATTCGATTGAAACTATATTAGAACTCAAAA-TATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|1 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCTAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATAGCTGA------A-----TAGTTAAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTTTCGATTTTAGTATCTTAAA-TATATAT--------------ATA--AATCACGTCAAGCT-TTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGAAGCCAAAAGAA-A-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGCCTCTGTTTAAACTTATTAAAATTAAATGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTTATCGAAAATATT-ACGTAAATATAAAGTTTTACGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATTTTAGAACTAAAAAATATGAATCCAACAGAGACTGGGCTAATCGATAAGCACATTTAATTTT-CACAAAGAACAAAAACAGTAAAATGA
gi|10 : GACACTCGTATGCAATGACTTA------A-----TAGTTGAAATAAT-T--C----A-AATA---ATATATACCGGTACCGGGGTTAATTCAAACTCGAGTATTATAAGGAACTCGA-AATTTGAAC-----AAT--------------TCTTCAATCATTTTTTTCTTTTC--AT-----TTAA--GT--CGATTCTCGACTTTGGTATGTCGA-----ATAC--------------ATATAAATCACATCAGTTTCTTT-A-AGTA--TTTTGAAACTG---------AATGAAACGG-AA-------ACGAC-------ATCAG----ACGTATG---------TTTTCCGTCATGTGATGTTTGATGCCAAAAGc
gi|11 : GACGTTCGTATACAATGACTAA------ACTATATGGTTCAAATAAT-T--C----A-AGTA---AAAT---------------ATAATTCAAACTCGAGAATT------------------CGAATGAGATAATCGAGATATG--AAGTCTTGAATAATTTATTCCTTTTC--AT-----ATATATGC--CAATTCTCGATTTTGGTACCTCAAA-TATATAC--------------ATA---A-CACGTCAAGTTCCTC-ACGATAACTTTTGAAAGTGAACAAAACAAACGAAACGG-AA-------ATGAC-------GTCAGGAGTAT----G---------TTTGCCGTCGCGTGACATTTGACGCCAAta
gi|12 : TCGTATAAAATGGCTAA------A-----TAGTTCATATACG-T--AGTTCA-AATG---ATAT---------------ATGATTCAAACTTGAGAATTATAAGGAACTCAGGAATTCAAATAATATAATCGAGATATGC--GGTCTTCAGTCGTTTATTTCTTT----AC-----ATAT--AC----ATGTATGACCTT----TCTTGACTTAAATAT--------------ATATAAATCATGACAAACTCTTTGA-AATAGCTTTTGATGCTGAACGAAACAAACG--ACGGCAG-------AC-AC----------------AT----G---------TTTGCGGACGTGTGACATTTGACGCCAAAA
gi|13 : cATGGCTAA------A-----TAGTTCAAATAA--T--G--------TA-----------------------TAATT----CTCAAAAATGGTAAGGAACTTGGGAATTTAAACAAGAAAATCGAGGTATGC--AGTCTTCAGTAATTTATTTCTTTTCATAT-----ATAT--AC--CAATTCTCGACTTTGGTATCTCAAA-TATATAT---------------T-TAAATCACGTCAAATTCTTTAA-GATAACTTTTGAAACTGAACAAA-CAAACGAAATGA-AA-------ATAACATTAAATGTGC-----AC----A---------TTTGCAATCGCAAGATATTTGACGCCGAA
gi|14 : aaTTGCATGCAATGGCTAAGCCTAAA-----TAGTTGAAATAAT-T--A----G-AATA---ATAT---------------ATAATTCAAACTCAAGAATCGTAAAGAACTTGAAAATTTAAACAAGATAATCGAGATATACAGTAT------TCACTTATTTTT--------------------------TTCTCGACTCT-GTATCTCAAA-TGTATA---------------A---AAATCATGTCAAGCCCT------GTAACTTTTGAAACTTTACAAAACAAAAGAGGTGG-AA-------GCTAC-------TTCAG----AC----A---------TTTGTATGCCGGCGAA---TGACGCCAAAAg
gi|15 : cACGCTCACATACAATTGCTAA------A-----TAGTT---------T--C----A-AATA---AAAT---------------TGTATTCAAGCTCGAGAATTGTAa
gi|15 : TCTTCAATAATTTATTTCTCTGC--ATTAAAAATA---------ACTCTCGACTTTGATATCTC------TATAC--------------ATATAAATtaattcttcaataatttatttctctgcattaaaaataactctcgactttgatatctctatacatataaat
gi|16 : acgctcacatacaattgctaaatagtttcaaataaaattgtattcaagctcgagaattgtataatGCGTCCTTTTAGTCTGAGCTATTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTG-TTGAATTGATTAGTACCGTATGG
gi|18 : TTAGTCAGAGCTGTTAATCTGTTCTTGCGAATTCTGCACAT
gi|2 : CGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACGGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTTTGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------CTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTGAAA-TATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTGTCAATGTGAGTTGCACTGGTCTCTGTTTAAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAATTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTT-CGTAAATATAAAGTTTTACGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAGAACTCAAAA-TATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|3 : aGCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCAAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTCATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTTATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTAAGTATCTTAAA-TATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGTTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTT-CGTAAATATAAAGTTTTACGGTG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAGAACTCAAAA-TATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|4 : GCGTCCTTTTAGTCTGAGCTGTTTATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCCCAGGTGGTTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AACA---AAAT---------------TTAATTCAAACTCGAGAATTGTTAGAAAA--GGGAATTCGAACGACAAAATCGAGATACGTGG--TCTTCAATCATTGATTTATTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TATATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTCAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTT-CGTAAATATAAAGTTATACGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTATAACTCAAAA-TATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATGTAACTTTCCACAAAGAATAAAAACAGTAAAATGA
gi|5 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGAGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTG----------------GCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AT-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TATATAT--------------ATATAAATCACGACAAGCTCTTT-A-TATAACTTATGAAACCGATCAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTAGCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGTAATACATAATATTAAACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTT-CGTAAATATAAAGTTTTACGATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ATAACATTATGGATTCGATTGAAACTATATTAAAACTCAAAA-TATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGAc
gi|6 : CGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTAAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGCGGTCTTCAATCATTGATTT-TTTCC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TATAT-T--------------ATATAAATCACGTCAAACTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAAAGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCTCATGAAATTTGACGCCAAAAGAAAN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATCCCTTTATCAATGTGAGTTGCACTGGTCT--GTTTAAACTTATTAAC------TGTTTATAGCAATACATACTATTACACAAA----TAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATT-ACGTAAATATAAAGTTTTACCATG---TGTGTTATGTATGC-TATCCAATTTTTCCAAATCTTTG-ACAACATTATGGATTCAATTGAAACTATTTTAGAACTCAAAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAACAAAAACAGTAAAATGAc
gi|7 : AAACGGGCTGGTTCTCTGGTGATTGAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAAAT--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTAATTT-GTTTC--AC-----ATAT--AC--CGATTCTCGc
gi|8 : GTATACAATGGCTAA------A-----TAGTTACAATAAT-TCCG----ATAATACATAAAT---------------ATAATTCAAATT-GAGAACTGTACGGAACTAGGGAATT--------AGAAT-GAGATA-------------ATCATAAATTTCTTTTC--TT-----AAAT--GT--TGATTCTTGACTTTGGTATCTCAAA-AATACATGACTTTTTTTTTGTATATAAATCACGTCAAACACTTT-AAGATAACTTTTGAAACCGAATGAAACAAACTAAAGGG-AA-------ACGTT-------GTCAG----AT----GTACATTGATTTCGTCGTCGTGTAACATTTGATGCCAAAA
gi|9 : AACTGACCCTGGTATACAATTGCTAA------A-----TAGGTAAAATAAT-T--T----G-AATT---ATAT---------------ATAA------------AATGGTATTGAACTCGGCTATTTAAACGA---------GATAAGCGG--TCTTTAATAATTTATTTCTTTTC--AT-----ATAT--ACACCAATTCTCGTCTTCGGTATCTCAAA-TATA-----------------A-ACAAATCATGTCAAATTCTTA-AAGTTAACTTTTGAAACTGAACAAAACAAACGAAACAT-AAACGATACACGAC-------ATCAG----ACTCATG---------TTTGCTTTCGCGTGGCATTTGATGCCAAAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTGTATACAATGGCTAGATAATTGGGTTATATCGTTTCAAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111111111 11111111111111 1111111 1111111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111
lowQualScore : 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 777777 66666 1 77 8888888 2 444 8888888888888888 3 1 1 888 1 33 66666 33 33 4 2 33 66666666666666 0 6 9 1 5 3 0000000 0000000 1 6666 77777777777777 2 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 999999 777 6
lowQualScore : . .............................................................................................. . . ...... ..... . .. ....... . ... ................ . . . ... . .. ..... .. .. . . .. .............. . . . . . . ....... ....... . .... .............. . . . ......................................................................................... ...... ... .
lowQualScore : 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 777777 77777 7 22 1111111 7 777 9999999999999999 6 1 7 555 0 77 77777 77 77 0 9 99 88888888888888 8 2 2 0 4 1 0000000 0000000 5 5555 88888888888888 1 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 555 7
consensus : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
Reference ( family-353 ) : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|1 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCTAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATAGCTGA------A-----TAGTTAAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTTTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATA--AATCACGTCAAGCT-TTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGAAGCCAAAAGAA-A-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGCCTCTGTTTAAACTTATTAAAATTAAATGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTTATCGAAAATATTACGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATTTTAGAACTAA-AAAATATGAATCCAACAGAGACTGGGCTAATCGATAAGCACATTTAATTTT-CACAAAGAACAAAAACAGTAAAATGA
gi|10 : GACACTCGTATGCAATGACTTA------A-----TAGTTGAAATAAT-T--C----A-AATA---ATATATACCGGTACCGGGGTTAATTCAAACTCGAGTATTATAAGGAACTCGA-AATTTGAAC-----AAT--------------TCTTCAATCATTTTTTTCTTTTC--AT-----TTAA--GT--CGATTCTCGACTTTGGTATGTCGA-------ATAC--------------ATATAAATCACATCAGTTTCTTT-A-AGTA--TTTTGAAACTG---------AATGAAACGG-AA-------ACGAC-------ATCAG----ACGTATG---------TTTTCCGTCATGTGATGTTTGATGCCAAAAGc
gi|11 : GACGTTCGTATACAATGACTAA------ACTATATGGTTCAAATAAT-T--C----A-AGTA---AAAT---------------ATAATTCAAACTCGAGAATT------------------CGAATGAGATAATCGAGATATG--AAGTCTTGAATAATTTATTCCTTTTC--AT-----ATATATGC--CAATTCTCGATTTTGGTACCTCAAA-TAT--ATAC--------------ATA-A---CACGTCAAGTTCCTC-ACGATAACTTTTGAAAGTGAACAAAACAAACGAAACGG-AA-------ATGAC-------GTCAGGAGTAT----G---------TTTGCCGTCGCGTGACATTTGACGCCAAta
gi|12 : TCGTATAAAATGGCTAA------A-----TAGTTCATATACG-T--AGTTCA-AATG---ATAT---------------ATGATTCAAACTTGAGAATTATAAGGAACTCAGGAATTCAAATAATATAATCGAGATATGC--GGTCTTCAGTCGTTTATTTCTTT----AC-----ATAT--AC----ATGTATGACCTT----TCTTGACTTAA--ATAT--------------ATATAAATCATGACAAACTCTTTGA-AATAGCTTTTGATGCTGAACGAAACAAACG--ACGGCAG-------AC-AC----------------AT----G---------TTTGCGGACGTGTGACATTTGACGCCAAAA
gi|13 : cATGGCTAA------A-----TAGTTCAAATAA--T--G--------TA-----------------------TAATT----CTCAAAAATGGTAAGGAACTTGGGAATTTAAACAAGAAAATCGAGGTATGC--AGTCTTCAGTAATTTATTTCTTTTCATAT-----ATAT--AC--CAATTCTCGACTTTGGTATCTCAAA-TAT--ATAT---------------T-TAAATCACGTCAAATTCTTTAA-GATAACTTTTGAAACTGAACAAA-CAAACGAAATGA-AA-------ATAACATTAAATGTGC-----AC----A---------TTTGCAATCGCAAGATATTTGACGCCGAA
gi|14 : aaTTGCATGCAATGGCTAAGCCTAAA-----TAGTTGAAATAAT-T--A----G-AATA---ATAT---------------ATAATTCAAACTCAAGAATCGTAAAGAACTTGAAAATTTAAACAAGATAATCGAGATATACAGTAT------TCACTTATTTTT--------------------------TTCTCGACTCT-GTATCTCAAA-TGT--ATA---------------A---AAATCATGTCAAGCCCT------GTAACTTTTGAAACTTTACAAAACAAAAGAGGTGG-AA-------GCTAC-------TTCAG----AC----A---------TTTGTATGCCGGCGAA---TGACGCCAAAAg
gi|15 : cACGCTCACATACAATTGCTAA------A-----TAGTT---------T--C----A-AATA---AAAT---------------TGTATTCAAGCTCGAGAATTGTAa
gi|15 : TCTTCAATAATTTATTTCTCTGC--ATTAAAAATA---------ACTCTCGACTTTGATATCTC------T--ATAC--------------ATATAAATtaattcttcaataatttatttctctgcattaaaaataactctcgactttgatatctctatacatataaat
gi|16 : acgctcacatacaattgctaaatagtttcaaataaaattgtattcaagctcgagaattgtataatGCGTCCTTTTAGTCTGAGCTATTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTG-TTGAATTGATTAGTACCGTATGG
gi|18 : TTAGTCAGAGCTGTTAATCTGTTCTTGCGAATTCTGCACAT
gi|2 : CGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACGGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTTTGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------CTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTGAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTGTCAATGTGAGTTGCACTGGTCTCTGTTTAAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAATTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|3 : aGCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCAAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTCATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTTATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTAAGTATCTTAAA-TATAT--AT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGTTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGGTGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|4 : GCGTCCTTTTAGTCTGAGCTGTTTATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCCCAGGTGGTTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AACA---AAAT---------------TTAATTCAAACTCGAGAATTGTTAGAAAA--GGGAATTCGAACGACAAAATCGAGATACGTGG--TCTTCAATCATTGATTTATTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTCAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTATACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTATAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATGTAACTTTCCACAAAGAATAAAAACAGTAAAATGA
gi|5 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGAGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTG----------------GCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AT-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATATAAATCACGACAAGCTCTTT-A-TATAACTTATGAAACCGATCAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTAGCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGTAATACATAATATTAAACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAAAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGAc
gi|6 : CGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTAAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGCGGTCTTCAATCATTGATTT-TTTCC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--AT-T--------------ATATAAATCACGTCAAACTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAAAGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCTCATGAAATTTGACGCCAAAAGAAAN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATCCCTTTATCAATGTGAGTTGCACTGGTCT--GTTTAAACTTATTAAC------TGTTTATAGCAATACATACTATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTACGTAAATATAAAGTTTTACCATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGACAACATTATGGATTCAATTGAAACTATTTTAGAACT-CAAAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAACAAAAACAGTAAAATGAc
gi|7 : AAACGGGCTGGTTCTCTGGTGATTGAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAAAT--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTAATTT-GTTTC--AC-----ATAT--AC--CGATTCTCGc
gi|8 : GTATACAATGGCTAA------A-----TAGTTACAATAAT-TCCG----ATAATACATAAAT---------------ATAATTCAAATT-GAGAACTGTACGGAACTAGGGAATT--------AGAAT-GAGATA-------------ATCATAAATTTCTTTTC--TT-----AAAT--GT--TGATTCTTGACTTTGGTATCTCAAA-AAT--ACATGACTTTTTTTTTGTATATAAATCACGTCAAACACTTT-AAGATAACTTTTGAAACCGAATGAAACAAACTAAAGGG-AA-------ACGTT-------GTCAG----AT----GTACATTGATTTCGTCGTCGTGTAACATTTGATGCCAAAA
gi|9 : AACTGACCCTGGTATACAATTGCTAA------A-----TAGGTAAAATAAT-T--T----G-AATT---ATAT---------------ATAA------------AATGGTATTGAACTCGGCTATTTAAACGA---------GATAAGCGG--TCTTTAATAATTTATTTCTTTTC--AT-----ATAT--ACACCAATTCTCGTCTTCGGTATCTCAAA-TAT--A-----------------A-ACAAATCATGTCAAATTCTTA-AAGTTAACTTTTGAAACTGAACAAAACAAACGAAACAT-AAACGATACACGAC-------ATCAG----ACTCATG---------TTTGCTTTCGCGTGGCATTTGATGCCAAAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTGTATACAATGGCTAGATAATTGGGTTATATCGTTTCAAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111111111 11111111111111 1111111 1111111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111
lowQualScore : 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 777777 66666 1 77 8888888 2 444 8888888888888888 3 1 1 888 1 33 66666 33 33 4 2 33 66666666666666 0 6 9 1 5 3 0000000 0000000 1 6666 77777777777777 2 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 999999 777 6
lowQualScore : . .............................................................................................. . . ...... ..... . .. ....... . ... ................ . . . ... . .. ..... .. .. . . .. .............. . . . . . . ....... ....... . .... .............. . . . ......................................................................................... ...... ... .
lowQualScore : 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 777777 77777 7 22 1111111 7 777 9999999999999999 6 1 7 555 0 77 77777 77 77 0 9 99 88888888888888 8 2 2 0 4 1 0000000 0000000 5 5555 88888888888888 1 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 555 7
consensus : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
Reference ( family-353 ) : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|1 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCTAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATAGCTGA------A-----TAGTTAAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTTTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATA--AATCACGTCAAGCT-TTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGAAGCCAAAAGAA-A-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGCCTCTGTTTAAACTTATTAAAATTAAATGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTTATCGAAAATATTACGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATTTTAGAACTAA-AAAATATGAATCCAACAGAGACTGGGCTAATCGATAAGCACATTTAATTTT-CACAAAGAACAAAAACAGTAAAATGA
gi|10 : GACACTCGTATGCAATGACTTA------A-----TAGTTGAAATAAT-T--C----A-AATA---ATATATACCGGTACCGGGGTTAATTCAAACTCGAGTATTATAAGGAACTCGA-AATTTGAAC-----AAT--------------TCTTCAATCATTTTTTTCTTTTC--AT-----TTAA--GT--CGATTCTCGACTTTGGTATGTCGA-------ATAC--------------ATATAAATCACATCAGTTTCTTT-A-AGTA--TTTTGAAACTG---------AATGAAACGG-AA-------ACGAC-------ATCAG----ACGTATG---------TTTTCCGTCATGTGATGTTTGATGCCAAAAGc
gi|11 : GACGTTCGTATACAATGACTAA------ACTATATGGTTCAAATAAT-T--C----A-AGTA---AAAT---------------ATAATTCAAACTCGAGAATT------------------CGAATGAGATAATCGAGATATG--AAGTCTTGAATAATTTATTCCTTTTC--AT-----ATATATGC--CAATTCTCGATTTTGGTACCTCAAA-TAT--ATAC--------------ATA-A---CACGTCAAGTTCCTC-ACGATAACTTTTGAAAGTGAACAAAACAAACGAAACGG-AA-------ATGAC-------GTCAGGAGTAT----G---------TTTGCCGTCGCGTGACATTTGACGCCAAta
gi|12 : TCGTATAAAATGGCTAA------A-----TAGTTCATATACG-T--AGTTCA-AATG---ATAT---------------ATGATTCAAACTTGAGAATTATAAGGAACTCAGGAATTCAAATAATATAATCGAGATATGC--GGTCTTCAGTCGTTTATTTCTTT----AC-----ATAT--AC----ATGTATGACCTT----TCTTGACTTAA--ATAT--------------ATATAAATCATGACAAACTCTTTGA-AATAGCTTTTGATGCTGAACGAAACAAACG--ACGGCAG-------AC-AC----------------AT----G---------TTTGCGGACGTGTGACATTTGACGCCAAAA
gi|13 : cATGGCTAA------A-----TAGTTCAAATAA--T--G--------TA-----------------------TAATT----CTCAAAAATGGTAAGGAACTTGGGAATTTAAACAAGAAAATCGAGGTATGC--AGTCTTCAGTAATTTATTTCTTTTCATAT-----ATAT--AC--CAATTCTCGACTTTGGTATCTCAAA-TAT--ATAT---------------T-TAAATCACGTCAAATTCTTTAA-GATAACTTTTGAAACTGAACAAA-CAAACGAAATGA-AA-------ATAACATTAAATGTGC-----AC----A---------TTTGCAATCGCAAGATATTTGACGCCGAA
gi|14 : aaTTGCATGCAATGGCTAAGCCTAAA-----TAGTTGAAATAAT-T--A----G-AATA---ATAT---------------ATAATTCAAACTCAAGAATCGTAAAGAACTTGAAAATTTAAACAAGATAATCGAGATATACAGTAT------TCACTTATTTTT--------------------------TTCTCGACTCT-GTATCTCAAA-TGT--ATA---------------A---AAATCATGTCAAGCCCT------GTAACTTTTGAAACTTTACAAAACAAAAGAGGTGG-AA-------GCTAC-------TTCAG----AC----A---------TTTGTATGCCGGCGAA---TGACGCCAAAAg
gi|15 : cACGCTCACATACAATTGCTAA------A-----TAGTT---------T--C----A-AATA---AAAT---------------TGTATTCAAGCTCGAGAATTGTAa
gi|15 : TCTTCAATAATTTATTTCTCTGC--ATTAAAAATA---------ACTCTCGACTTTGATATCTC------T--ATAC--------------ATATAAATtaattcttcaataatttatttctctgcattaaaaataactctcgactttgatatctctatacatataaat
gi|16 : acgctcacatacaattgctaaatagtttcaaataaaattgtattcaagctcgagaattgtataatGCGTCCTTTTAGTCTGAGCTATTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTG-TTGAATTGATTAGTACCGTATGG
gi|18 : TTAGTCAGAGCTGTTAATCTGTTCTTGCGAATTCTGCACAT
gi|2 : CGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACGGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTTTGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------CTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTGAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTGTCAATGTGAGTTGCACTGGTCTCTGTTTAAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAATTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|3 : aGCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCAAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTCATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTTATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTAAGTATCTTAAA-TATAT--AT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGTTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGGTGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|4 : GCGTCCTTTTAGTCTGAGCTGTTTATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCCCAGGTGGTTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AACA---AAAT---------------TTAATTCAAACTCGAGAATTGTTAGAAAA--GGGAATTCGAACGACAAAATCGAGATACGTGG--TCTTCAATCATTGATTTATTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTCAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTATACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTATAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATGTAACTTTCCACAAAGAATAAAAACAGTAAAATGA
gi|5 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGAGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTG----------------GCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AT-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATATAAATCACGACAAGCTCTTT-A-TATAACTTATGAAACCGATCAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTAGCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGTAATACATAATATTAAACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAAAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGAc
gi|6 : CGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTAAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGCGGTCTTCAATCATTGATTT-TTTCC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--AT-T--------------ATATAAATCACGTCAAACTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAAAGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCTCATGAAATTTGACGCCAAAAGAAAN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATCCCTTTATCAATGTGAGTTGCACTGGTCT--GTTTAAACTTATTAAC------TGTTTATAGCAATACATACTATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTACGTAAATATAAAGTTTTACCATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGACAACATTATGGATTCAATTGAAACTATTTTAGAACT-CAAAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAACAAAAACAGTAAAATGAc
gi|7 : AAACGGGCTGGTTCTCTGGTGATTGAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAAAT--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTAATTT-GTTTC--AC-----ATAT--AC--CGATTCTCGc
gi|8 : GTATACAATGGCTAA------A-----TAGTTACAATAAT-TCCG----ATAATACATAAAT---------------ATAATTCAAATT-GAGAACTGTACGGAACTAGGGAATT--------AGAAT-GAGATA-------------ATCATAAATTTCTTTTC--TT-----AAAT--GT--TGATTCTTGACTTTGGTATCTCAAA-AAT--ACATGACTTTTTTTTTGTATATAAATCACGTCAAACACTTT-AAGATAACTTTTGAAACCGAATGAAACAAACTAAAGGG-AA-------ACGTT-------GTCAG----AT----GTACATTGATTTCGTCGTCGTGTAACATTTGATGCCAAAA
gi|9 : AACTGACCCTGGTATACAATTGCTAA------A-----TAGGTAAAATAAT-T--T----G-AATT---ATAT---------------ATAA------------AATGGTATTGAACTCGGCTATTTAAACGA---------GATAAGCGG--TCTTTAATAATTTATTTCTTTTC--AT-----ATAT--ACACCAATTCTCGTCTTCGGTATCTCAAA-TAT--A-----------------A-ACAAATCATGTCAAATTCTTA-AAGTTAACTTTTGAAACTGAACAAAACAAACGAAACAT-AAACGATACACGAC-------ATCAG----ACTCATG---------TTTGCTTTCGCGTGGCATTTGATGCCAAAAG
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C A GCCTAA CTATA G AA AGTTC T CAT ATACCGGTACCGGGGT G T T AGT T AT TAAAA AT AC G T AT GACTTTTTTTTTGT G C T A C ACGATAC ATTAAAT A GAGT GTACATTGAT G A T TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . CA C
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T A . . C T CCG . . A T T T GGG T . . . . G . . . A A T A . . . A . GTATG G G C TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . C .
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C A . . C T C . . A G A T GGG T . . . . G . . . . A T A . . . C . TCATG G G C TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . C .
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G A . . C G C . . A G T T GGG T . . . . G . . . . . T C . . . A . G A G T ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . C .
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G A . . G T G . . T C A C GCG T . . . . A . . . . . T C . . . C . G T C A TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . C .
blockSeqs : G T . . C A A . . C C A C GGG T . . . . A . . . . . A C . . . C . A C T A
blockSeqs : G T . . C A C . . T C A C AA G . . . . A . . . . . A C . . . C . A C T A
blockSeqs : G T . . C A G . . T C A C GG G . . . . A . . . . . A C . . . C . G C T A
blockSeqs : C T . . C A G . . T C A C GG G . . . . A . . . . . A A . . . C . G C T A
blockSeqs : . T . . C A G . . T C A C G G . . . . G . . . . . A A . . . A . G C T A
blockSeqs : A . . C T G . . T . G A A G . . . . G . . . . . T . . . . A . G G G C
blockSeqs : A . . A T G . . A . . . . A . . . . . . . . . . T . . . . . . G T G C
blockSeqs : . . . A . G . . A . . . . A . . . . . . . .
blockSeqs : . . . . T . . . T . . . .
blockSeqCons : ****** C**
originalCons : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
finalCons : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACTC--AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTGTATACAATGGCTAGATAATTGGGTTATATCGTTTCAAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111111111 11111111111111 1111111 1111111 11111111111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111
lowQualScore : 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 777777 66666 1 77 8888888 2 444 8888888888888888 3 1 1 888 1 33 66666 33 33 4 2 33 66666666666666 0 6 9 1 5 3 0000000 0000000 1 6666 77777777777777 2 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 999999 777 6
lowQualScore : . .............................................................................................. . . ...... ..... . .. ....... . ... ................ . . . ... . .. ..... .. .. . . .. .............. . . . . . . ....... ....... . .... .............. . . . ......................................................................................... ...... ... .
lowQualScore : 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 777777 77777 7 22 1111111 7 777 9999999999999999 6 1 7 555 0 77 77777 77 77 0 9 99 88888888888888 8 2 2 0 4 1 0000000 0000000 5 5555 88888888888888 1 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 555 7
consensus : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
Reference ( family-353 ) : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACNATGGCTAA------A-----TAGTTCAAATAAN-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGGAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTNATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGACTTTGGTATCTCAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTNTGAAACCGAACAAACCAAACGAAACGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCNCGTGANATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|1 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCTAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATAGCTGA------A-----TAGTTAAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTTTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATA--AATCACGTCAAGCT-TTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGAAGCCAAAAGAA-A-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGCCTCTGTTTAAACTTATTAAAATTAAATGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTTATCGAAAATATTACGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATTTTAGAACTAA-AAAATATGAATCCAACAGAGACTGGGCTAATCGATAAGCACATTTAATTTT-CACAAAGAACAAAAACAGTAAAATGA
gi|10 : GACACTCGTATGCAATGACTTA------A-----TAGTTGAAATAAT-T--C----A-AATA---ATATATACCGGTACCGGGGTTAATTCAAACTCGAGTATTATAAGGAACTCGA-AATTTGAAC-----AAT--------------TCTTCAATCATTTTTTTCTTTTC--AT-----TTAA--GT--CGATTCTCGACTTTGGTATGTCGA-------ATAC--------------ATATAAATCACATCAGTTTCTTT-A-AGTA--TTTTGAAACTG---------AATGAAACGG-AA-------ACGAC-------ATCAG----ACGTATG---------TTTTCCGTCATGTGATGTTTGATGCCAAAAGc
gi|11 : GACGTTCGTATACAATGACTAA------ACTATATGGTTCAAATAAT-T--C----A-AGTA---AAAT---------------ATAATTCAAACTCGAGAATT------------------CGAATGAGATAATCGAGATATG--AAGTCTTGAATAATTTATTCCTTTTC--AT-----ATATATGC--CAATTCTCGATTTTGGTACCTCAAA-TAT--ATAC--------------ATA-A---CACGTCAAGTTCCTC-ACGATAACTTTTGAAAGTGAACAAAACAAACGAAACGG-AA-------ATGAC-------GTCAGGAGTAT----G---------TTTGCCGTCGCGTGACATTTGACGCCAAta
gi|12 : TCGTATAAAATGGCTAA------A-----TAGTTCATATACG-T--AGTTCA-AATG---ATAT---------------ATGATTCAAACTTGAGAATTATAAGGAACTCAGGAATTCAAATAATATAATCGAGATATGC--GGTCTTCAGTCGTTTATTTCTTT----AC-----ATAT--AC----ATGTATGACCTT----TCTTGACTTAA--ATAT--------------ATATAAATCATGACAAACTCTTTGA-AATAGCTTTTGATGCTGAACGAAACAAACG--ACGGCAG-------AC-AC----------------AT----G---------TTTGCGGACGTGTGACATTTGACGCCAAAA
gi|13 : cATGGCTAA------A-----TAGTTCAAATAA--T--G--------TA-----------------------TAATT----CTCAAAAATGGTAAGGAACTTGGGAATTTAAACAAGAAAATCGAGGTATGC--AGTCTTCAGTAATTTATTTCTTTTCATAT-----ATAT--AC--CAATTCTCGACTTTGGTATCTCAAA-TAT--ATAT---------------T-TAAATCACGTCAAATTCTTTAA-GATAACTTTTGAAACTGAACAAA-CAAACGAAATGA-AA-------ATAACATTAAATGTGC-----AC----A---------TTTGCAATCGCAAGATATTTGACGCCGAA
gi|14 : aaTTGCATGCAATGGCTAAGCCTAAA-----TAGTTGAAATAAT-T--A----G-AATA---ATAT---------------ATAATTCAAACTCAAGAATCGTAAAGAACTTGAAAATTTAAACAAGATAATCGAGATATACAGTAT------TCACTTATTTTT--------------------------TTCTCGACTCT-GTATCTCAAA-TGT--ATA---------------A---AAATCATGTCAAGCCCT------GTAACTTTTGAAACTTTACAAAACAAAAGAGGTGG-AA-------GCTAC-------TTCAG----AC----A---------TTTGTATGCCGGCGAA---TGACGCCAAAAg
gi|15 : cACGCTCACATACAATTGCTAA------A-----TAGTT---------T--C----A-AATA---AAAT---------------TGTATTCAAGCTCGAGAATTGTAa
gi|15 : TCTTCAATAATTTATTTCTCTGC--ATTAAAAATA---------ACTCTCGACTTTGATATCTC------T--ATAC--------------ATATAAATtaattcttcaataatttatttctctgcattaaaaataactctcgactttgatatctctatacatataaat
gi|16 : acgctcacatacaattgctaaatagtttcaaataaaattgtattcaagctcgagaattgtataatGCGTCCTTTTAGTCTGAGCTATTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTG-TTGAATTGATTAGTACCGTATGG
gi|18 : TTAGTCAGAGCTGTTAATCTGTTCTTGCGAATTCTGCACAT
gi|2 : CGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACGGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTTTGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------CTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTGAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTGTCAATGTGAGTTGCACTGGTCTCTGTTTAAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAATTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|3 : aGCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCAAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTCATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTTATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AC-----ATAT--GC--CGATTCTCGATTTAAGTATCTTAAA-TATAT--AT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTATCAATGTGAGTTGCACTGTTCTCTGTTTAAACTTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGGTGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAGAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGA
gi|4 : GCGTCCTTTTAGTCTGAGCTGTTTATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCCCAGGTGGTTTAATTGATTAGTACCGTATGGGATGTACTGATTTTACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AACA---AAAT---------------TTAATTCAAACTCGAGAATTGTTAGAAAA--GGGAATTCGAACGACAAAATCGAGATACGTGG--TCTTCAATCATTGATTTATTTTC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATATAAATCACGTCAAGCTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAATACAATTCCTTTATCAATGTGAGTTGCACTGGTCTCTGTTTCAACGTATTAAC------TGTTTATAGCAATACATAATATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTATACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTATAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATGTAACTTTCCACAAAGAATAAAAACAGTAAAATGA
gi|5 : GCGTCCTTTTAGTCTGAGCTGTTAATCTGTTCTTGCGAGTTCTGCACATAAACGGGCTGGTTCTCTGGTGATTTAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGAGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTG----------------GCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTGATTTCTTTTC--AT-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--ATAT--------------ATATAAATCACGACAAGCTCTTT-A-TATAACTTATGAAACCGATCAAACCAAACGAAACGG-AA-------ATGAC-------GTCCG----AC----G---------TTTGCCCTCTCGTGAAATTTGACGCCAAAAGAA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATTCCTTTAGCAATGTGAGTTGCACTGGTCTCTGTTTAAACTTATTAAC------TGTTTATAGTAATACATAATATTAAACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTTCGTAAATATAAAGTTTTACGATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGATAACATTATGGATTCGATTGAAACTATATTAAAACT-C-AAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAATAAAAACAGTAAAATGAc
gi|6 : CGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAA-T--G----A-AATA---AAAT---------------TTAATTAAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGCGGTCTTCAATCATTGATTT-TTTCC--AC-----ATAT--GC--CGATTCTCGATTTTAGTATCTTAAA-TAT--AT-T--------------ATATAAATCACGTCAAACTCTTT-A-GATAACTTATGAAACCGAACAAACCAAACGAAAAGG-AA-------ACGAC-------GTCCG----AC----G---------TTTGCCCTCTCATGAAATTTGACGCCAAAAGAAAN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TGATAATACAATCCCTTTATCAATGTGAGTTGCACTGGTCT--GTTTAAACTTATTAAC------TGTTTATAGCAATACATACTATTACACAAATAGCATAACTGCATGTACATACATAACAAAAGTCACCGAATTAATCGAATATATTACGTAAATATAAAGTTTTACCATGTGTGTTATGTATGCTATCCAATTTTTCCAAATCTTTGACAACATTATGGATTCAATTGAAACTATTTTAGAACT-CAAAAATATGAATCCAAAAGAGACTGGGCTAATCGATAAGCACATTTAACTTT-CACAAAGAACAAAAACAGTAAAATGAc
gi|7 : AAACGGGCTGGTTCTCTGGTGATTGAATTGATTAGTACCGTATGGGATGTACTGATTTCACCACAGGGCATTAGCCCGAGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGACGGTCGTATACTATGGCTAA------A-----TAGTTCAAATAAAAT--G----A-AATA---AAAT---------------TTAATTCAAACTCGAGAATTGTAAGAAACTCGGGAATTCGAACGACAAAATCGAGATACGCGGGGTCTTCAATCATTAATTT-GTTTC--AC-----ATAT--AC--CGATTCTCGc
gi|8 : GTATACAATGGCTAA------A-----TAGTTACAATAAT-TCCG----ATAATACATAAAT---------------ATAATTCAAATT-GAGAACTGTACGGAACTAGGGAATT--------AGAAT-GAGATA-------------ATCATAAATTTCTTTTC--TT-----AAAT--GT--TGATTCTTGACTTTGGTATCTCAAA-AAT--ACATGACTTTTTTTTTGTATATAAATCACGTCAAACACTTT-AAGATAACTTTTGAAACCGAATGAAACAAACTAAAGGG-AA-------ACGTT-------GTCAG----AT----GTACATTGATTTCGTCGTCGTGTAACATTTGATGCCAAAA
gi|9 : AACTGACCCTGGTATACAATTGCTAA------A-----TAGGTAAAATAAT-T--T----G-AATT---ATAT---------------ATAA------------AATGGTATTGAACTCGGCTATTTAAACGA---------GATAAGCGG--TCTTTAATAATTTATTTCTTTTC--AT-----ATAT--ACACCAATTCTCGTCTTCGGTATCTCAAA-TAT--A-----------------A-ACAAATCATGTCAAATTCTTA-AAGTTAACTTTTGAAACTGAACAAAACAAACGAAACAT-AAACGATACACGAC-------ATCAG----ACTCATG---------TTTGCTTTCGCGTGGCATTTGATGCCAAAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTGTATACAATGGCTAGATAATTGGGTTATATCGTTTCAAAT