lowQualScore : 2222222222222222222222222222 1111111111111111111
lowQualScore : 1 2 2 2 00 2 4444444444444444444444444444 6666666666666666666 6666666 2 3 4
lowQualScore : . . . . .. . ............................ ................... ....... . . .
lowQualScore : 2 1 2 2 66 5 6666666666666666666666666666 3333333333333333333 8888888 9 3 0
consensus : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCA-ATTTAATT-CAC-------T-------------------CAATAT-------------------T-------G-AGTG-AATTAAAT-TGAACTG
Reference ( gi|3 ) : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCA-ATTTAATT-CAC-------T-------------------TAATAT-------------------T-------G-AGTG-AATTAAAT-TGAACTGG
gi|6 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCA-AT-----------------G-------------------TAATAT-------------------T-------G-AGTG-AATTAAAT-TGAA
gi|9 : TTTTCATTCAAAAAT-ATTCCTCAGGGAAGTAATCATATGACA-CAAGTTCA-GTTTAATT-CAC-------T-------------------CAATAT-------------------T-------
gi|21 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTAa
gi|17 : aTTTTCATTCAAAAAT-ATTCCTCAAGGAAGTAATCATATAACA-CAAG
gi|23 : taTTTTCATTCAAAAAT-CTTCCTCAGGGAAGAAACCATATTA
gi|5 : TTTCCATTCAAAAAT-CTTCCTCAGGGAAGTAGATATATAACA-TATGTTCA-A--AAAAT-CACTCA----T-------------------TGTTAT-------------------T-------T-AGTG-A
gi|22 : taTTTTCATTCAGAAAT-CTACCTCAGGGAAGTAACCATATTAt
gi|4 : aTTTTCATTCGAAAGT-CTTCCTCGAGTAAGTAAATATATCATA-TAAGTTCA-A
gi|27 : ttaTTTTCATTCAGAAAT-CTTCCTCAGGGAAGTAGATATATataatcatgatgagtggacttgtttacaat
gi|36 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAG
gi|19 : taTTTTCATTCAGCAAT-CTTCTTCAGGGAAGTAATCACATTA
gi|16 : atgTTTTCATTAAAAAAAACTTCCTCAGGGAAGTAGATATATAACA-TAAG
gi|15 : ataTTTTCATTTAAAAAT-CTTCCTAAGGGAGGTAGATATATAACa
gi|20 : tattattaTTTACATTAAGAAAT-CTTCCTTAGGAAAGTAAATATATCACttttgctaaa
gi|13 : aTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACT-CA--TTCA-ATTTAATT-CAC-------T-------------------CAATAT-------------------T-------
gi|25 : TTTCATTCAAAAAT-CATCCTCAGGGAAGTAATCATAT
gi|8 : TTTCATTCAAAA-T-TTTCC-CAGGGAAGTGAATATATCACA-TACGTTCA-A-ATAA---CAC-------T-------------------CATCAT-------------------T-------T-AGTga
gi|2 : TTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCA-ATTTAATT-CACTCAATATT-------------------TAATAT-------------------T-------G-AGTG-AATTAAAT-TGAAttcat
gi|29 : TTCATTCAAAAAT-CTTCCTCAGGGAAATAACCATATTA
gi|31 : TTCATTCAAAAAT-CTTCCTCAGGGAAGTAATCATAT
gi|24 : aTTCATTCAAAAAT-CTTCATCAAGGAAGTAACCATATTAg
gi|30 : taTTCATTCAAAAAT-CTTCCTCAGGGAA-TAATCATATT
gi|11 : taTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTGCT-CAAGCTCA-ATTTATTT-CAC-------T-------------------CAGTAT-------------------T-------A-A
gi|26 : TCATTTTTAAAT-CTTCCTCAGGGAAGTAACCATATTACA-ag
gi|28 : TCATTCACAAAT-CTTCCTCAAGGAAGTAAATATA
gi|12 : tatcaCATTCAAAAAT-CTTCCTTAGGGACGTAAATATATCACA-TAA---------TAATT-CAC-------T-------------------CATCAT-------------------T-------
gi|32 : tgACTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTAtatttttc
gi|7 : tTTCAAAACT-TTTCCTCAGGGAAGTAAATATATCACA-TAAATTCA-AATCAATT-TGC-------T-------------------AATTAT-------------------T-------
gi|10 : TCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCA-ATTTAATT-CAC-------T-------------------CAATAT-------------------T-------tatttgaaa
gi|33 : TCAAAAAT-CTTCCTCAAGGAAGTGATCATATTAtaatttag
gi|34 : AAAAAT-CTACCTCAGGGAAGTAACCATATTAC
gi|18 : AACT-CTTCCTCAGGGAAGTAAAAATATCACATTAGGTTTA-
gi|1 : CCTCAGGGAAGTAACCATATTACA-CAAGTTCA-ATTTAATT-CAC-------T-------------------CAATATTAAACAAAAAATTAAATACT-------G-AGTG-AATTTAAT-TGAACTggtc
gi|14 : ATATTACA-CAAGTTCA-ATTTAATT-CAC-------T-------------------CAATAT-------------------C-------A-AGTATAGTTATATATAAACTGtgt
gi|1 : aA-CAAGTTCA-ATTAAATT-CAC-------TCAGTATTTAATTTTTTGTTTAATAT-------------------T-------G-AGTG-AATTAAAT-TGAACTac
gi|14 : cctcagggaagtaaccatattacacaAGTTTATATATAACTATAC-------T-------------------TGATAT-------------------T-------G-AGTG-AATTAAAT-TGAACT
gi|2 : acTTCA-ATTTAATT-CAC-------T-------------------CAATAT-------------------TAAATATTG-AGTG-AATTAAAT-TGAACTtgtgtaatatac
gi|6 : ttcattcaaaaatcttcctcagggaagtaaccatattacacaTTCA-ATTTAATT-CAC-------T-------------------CAATAT-------------------T-------ACATTG-AACT
gi|9 : ttttcattcaaaaatcttcctcagggaagtaaccatattacaca-------------------TAATAT-------------------T-------G-AGTG-AATTAAAC-TGAACT
gi|10 : attttcattcaaaaatattcctcagggaagtaatcatatgacacaAATAT-------------------T-------G-AGTG-AATTAAAT-TGAACT
gi|13 : tcaaaaatcttcctcagggaagtaaccatattacacaAATAT-------------------T-------G-AGTG-AATTAAAT-TGAAtaatttag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|35 ): CAAGTTCCCATTTTCCTCTTCGTTAGGAGCGT
Alignments
lowQualScore : 1111111 22222222222222222222
lowQualScore : 1 2 2 2 0000000 5555 44444444444444444444 6 8
lowQualScore : . . . . ....... .... .................... . .
lowQualScore : 2 5 2 4 0000000 5555 11111111111111111111 7 0
consensus : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
Reference ( family-3490 ) : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
gi|1 : CCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATTAAACAAAAAATTAAATACTGAGTG-AATTTAAT-TGAACT
gi|10 : TCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------tgt
gi|11 : TCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTGCT-CAAGCTCAATTTATTTCACTC-------A---GTATT-------------------AAtaatttag
gi|12 : CATTCAAAAAT-CTTCCTTAGGGACGTAAATATATCACA-TAA--------TAATTCACTC-------A---TCATT-------------------ag
gi|13 : tgTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACT-CA--TTCAATTTAATTCACTC-------A---ATATT-------------------tatttttc
gi|14 : ATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATC-------------------AAGTATAGTTATATATAAACTG
gi|15 : aTTTTCATTTAAAAAT-CTTCCTAAGGGAGGTAGATATATAACac
gi|16 : tattattaTTTTCATTAAAAAAAACTTCCTCAGGGAAGTAGATATATAACA-TAAGttttgctaaa
gi|17 : ataTTTTCATTCAAAAAT-ATTCCTCAAGGAAGTAATCATATAACA-CAAGa
gi|18 : taAACT-CTTCCTCAGGGAAGTAAAAATATCACATTAGGTTTA
gi|19 : TTTTCATTCAGCAAT-CTTCTTCAGGGAAGTAATCACATTAggtc
gi|2 : atgTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTCAATATTTA---ATATT-------------------GAGTG-AATTAAAT-TGAA
gi|20 : TTTACATTAAGAAAT-CTTCCTTAGGAAAGTAAATATATCAC
gi|21 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTA
gi|22 : aTTTTCATTCAGAAAT-CTACCTCAGGGAAGTAACCATATTA
gi|23 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGAAACCATATTA
gi|24 : TTCATTCAAAAAT-CTTCATCAAGGAAGTAACCATATTA
gi|25 : taTTTCATTCAAAAAT-CATCCTCAGGGAAGTAATCATAT
gi|26 : TCATTTTTAAAT-CTTCCTCAGGGAAGTAACCATATTACA-ga
gi|27 : TTTTCATTCAGAAAT-CTTCCTCAGGGAAGTAGATATAT
gi|28 : aTCATTCACAAAT-CTTCCTCAAGGAAGTAA--ATAT
gi|29 : tatcaTTCATTCAAAAAT-CTTCCTCAGGGAAATAACCATATTAa
gi|3 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTT-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
gi|30 : TTCATTCAAAAAT-CTTCCTCAGGGAA-TAATCATATTg
gi|31 : taTTCATTCAAAAAT-CTTCCTCAGGGAAGTAATCATAT
gi|32 : aACTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTAg
gi|33 : tTCAAAAAT-CTTCCTCAAGGAAGTGATCATATTA
gi|34 : AAAAAT-CTACCTCAGGGAAGTAACCATATTAC
gi|36 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAG
gi|4 : taTTTTCATTCGAAAGT-CTTCCTCGAGTAAGTAAATATATCATA-TAAGTTCAA
gi|5 : ttaTTTCCATTCAAAAAT-CTTCCTCAGGGAAGTAGATATATAACA-TATGTTCAA--AAAATCACTC-------ATTGTTATT-------------------TAGTG-Aataatcatgatgagtggacttgtttacaat
gi|6 : taTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATGT----------------A---ATATT-------------------GAGTG-AATTAAAT-TGAAt
gi|7 : TTCAAAACT-TTTCCTCAGGGAAGTAAATATATCACA-TAAATTCAAATCAATTTGCTA-------A---TTATT-------------------
gi|8 : TTTCATTCAAAA-T-TTTCC-CAGGGAAGTGAATATATCACA-TACGTTCAA-ATAA--CACTC-------A---TCATT-------------------TAGTtatttgaaa
gi|9 : TTTTCATTCAAAAAT-ATTCCTCAGGGAAGTAATCATATGACA-CAAGTTCAGTTTAATTCACTC-------A---ATATT-------------------ttcat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CAAGTTCCCATTTTCCTCTTCGTTAGGAGCGT
Alignments
lowQualScore : 1111111 22222222222222222222
lowQualScore : 1 2 2 2 0000000 5555 44444444444444444444 6 8
lowQualScore : . . . . ....... .... .................... . .
lowQualScore : 2 5 2 4 0000000 5555 11111111111111111111 7 0
consensus : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
Reference ( family-3490 ) : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
gi|1 : CCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATTAAACAAAAAATTAAATACTGAGTG-AATTTAAT-TGAACT
gi|10 : TCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------tgt
gi|11 : TCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTGCT-CAAGCTCAATTTATTTCACTC-------A---GTATT-------------------AAtaatttag
gi|12 : CATTCAAAAAT-CTTCCTTAGGGACGTAAATATATCACA-TAA--------TAATTCACTC-------A---TCATT-------------------ag
gi|13 : tgTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACT-CA--TTCAATTTAATTCACTC-------A---ATATT-------------------tatttttc
gi|14 : ATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATC-------------------AAGTATAGTTATATATAAACTG
gi|15 : aTTTTCATTTAAAAAT-CTTCCTAAGGGAGGTAGATATATAACac
gi|16 : tattattaTTTTCATTAAAAAAAACTTCCTCAGGGAAGTAGATATATAACA-TAAGttttgctaaa
gi|17 : ataTTTTCATTCAAAAAT-ATTCCTCAAGGAAGTAATCATATAACA-CAAGa
gi|18 : taAACT-CTTCCTCAGGGAAGTAAAAATATCACATTAGGTTTA
gi|19 : TTTTCATTCAGCAAT-CTTCTTCAGGGAAGTAATCACATTAggtc
gi|2 : atgTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTCAATATTTA---ATATT-------------------GAGTG-AATTAAAT-TGAA
gi|20 : TTTACATTAAGAAAT-CTTCCTTAGGAAAGTAAATATATCAC
gi|21 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTA
gi|22 : aTTTTCATTCAGAAAT-CTACCTCAGGGAAGTAACCATATTA
gi|23 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGAAACCATATTA
gi|24 : TTCATTCAAAAAT-CTTCATCAAGGAAGTAACCATATTA
gi|25 : taTTTCATTCAAAAAT-CATCCTCAGGGAAGTAATCATAT
gi|26 : TCATTTTTAAAT-CTTCCTCAGGGAAGTAACCATATTACA-ga
gi|27 : TTTTCATTCAGAAAT-CTTCCTCAGGGAAGTAGATATAT
gi|28 : aTCATTCACAAAT-CTTCCTCAAGGAAGTAA--ATAT
gi|29 : tatcaTTCATTCAAAAAT-CTTCCTCAGGGAAATAACCATATTAa
gi|3 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTT-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
gi|30 : TTCATTCAAAAAT-CTTCCTCAGGGAA-TAATCATATTg
gi|31 : taTTCATTCAAAAAT-CTTCCTCAGGGAAGTAATCATAT
gi|32 : aACTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTAg
gi|33 : tTCAAAAAT-CTTCCTCAAGGAAGTGATCATATTA
gi|34 : AAAAAT-CTACCTCAGGGAAGTAACCATATTAC
gi|36 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAG
gi|4 : taTTTTCATTCGAAAGT-CTTCCTCGAGTAAGTAAATATATCATA-TAAGTTCAA
gi|5 : ttaTTTCCATTCAAAAAT-CTTCCTCAGGGAAGTAGATATATAACA-TATGTTCAA--AAAATCACTC-------ATTGTTATT-------------------TAGTG-Aataatcatgatgagtggacttgtttacaat
gi|6 : taTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATGT----------------A---ATATT-------------------GAGTG-AATTAAAT-TGAAt
gi|7 : TTCAAAACT-TTTCCTCAGGGAAGTAAATATATCACA-TAAATTCAAATCAATTTGCTA-------A---TTATT-------------------
gi|8 : TTTCATTCAAAA-T-TTTCC-CAGGGAAGTGAATATATCACA-TACGTTCAA-ATAA--CACTC-------A---TCATT-------------------TAGTtatttgaaa
gi|9 : TTTTCATTCAAAAAT-ATTCCTCAGGGAAGTAATCATATGACA-CAAGTTCAGTTTAATTCACTC-------A---ATATT-------------------ttcat
blockSeqs : A C T T AATATTT TTGT A T A
blockSeqs : . C . T . A A . .
blockSeqs : . A . T . G G . .
blockSeqs : . C . T . T G . .
blockSeqs : . A . T . A T .
blockSeqs : . A . T . A G
blockSeqs : . T . T . A T
blockSeqs : . A . A . A
blockSeqs : . T . T . A
blockSeqs : . C . . . T
blockSeqs : . A . . . T
blockSeqs : . C . . . A
blockSeqs : . C .
blockSeqs : . C .
blockSeqs : . C .
blockSeqs : . T .
blockSeqs : . C .
blockSeqs : . A
blockSeqs : . C
blockSeqs : . C
blockSeqs : . T
blockSeqs : . T
blockSeqs : . C
blockSeqs : . T
blockSeqs : . C
blockSeqs : . A
blockSeqs : . A
blockSeqs : . C
blockSeqs : . A
blockSeqs : . A
blockSeqs : . T
blockSeqs : . .
blockSeqCons : G*******************
originalCons : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
finalCons : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATTG-------------------AGTG-AATTAAAT-TGAACTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CAAGTTCCCATTTTCCTCTTCGTTAGGAGCGT
Alignments
lowQualScore : 1111111 22222222222222222222
lowQualScore : 1 2 2 2 0000000 5555 44444444444444444444 6 8
lowQualScore : . . . . ....... .... .................... . .
lowQualScore : 2 5 2 4 0000000 5555 11111111111111111111 7 0
consensus : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
Reference ( family-3490 ) : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
gi|1 : CCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATTAAACAAAAAATTAAATACTGAGTG-AATTTAAT-TGAACT
gi|10 : TCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATT-------------------tgt
gi|11 : TCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTGCT-CAAGCTCAATTTATTTCACTC-------A---GTATT-------------------AAtaatttag
gi|12 : CATTCAAAAAT-CTTCCTTAGGGACGTAAATATATCACA-TAA--------TAATTCACTC-------A---TCATT-------------------ag
gi|13 : tgTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACT-CA--TTCAATTTAATTCACTC-------A---ATATT-------------------tatttttc
gi|14 : ATATTACA-CAAGTTCAATTTAATTCACTC-------A---ATATC-------------------AAGTATAGTTATATATAAACTG
gi|15 : aTTTTCATTTAAAAAT-CTTCCTAAGGGAGGTAGATATATAACac
gi|16 : tattattaTTTTCATTAAAAAAAACTTCCTCAGGGAAGTAGATATATAACA-TAAGttttgctaaa
gi|17 : ataTTTTCATTCAAAAAT-ATTCCTCAAGGAAGTAATCATATAACA-CAAGa
gi|18 : taAACT-CTTCCTCAGGGAAGTAAAAATATCACATTAGGTTTA
gi|19 : TTTTCATTCAGCAAT-CTTCTTCAGGGAAGTAATCACATTAggtc
gi|2 : atgTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTCAATATTTA---ATATT-------------------GAGTG-AATTAAAT-TGAA
gi|20 : TTTACATTAAGAAAT-CTTCCTTAGGAAAGTAAATATATCAC
gi|21 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTA
gi|22 : aTTTTCATTCAGAAAT-CTACCTCAGGGAAGTAACCATATTA
gi|23 : aTTTTCATTCAAAAAT-CTTCCTCAGGGAAGAAACCATATTA
gi|24 : TTCATTCAAAAAT-CTTCATCAAGGAAGTAACCATATTA
gi|25 : taTTTCATTCAAAAAT-CATCCTCAGGGAAGTAATCATAT
gi|26 : TCATTTTTAAAT-CTTCCTCAGGGAAGTAACCATATTACA-ga
gi|27 : TTTTCATTCAGAAAT-CTTCCTCAGGGAAGTAGATATAT
gi|28 : aTCATTCACAAAT-CTTCCTCAAGGAAGTAA--ATAT
gi|29 : tatcaTTCATTCAAAAAT-CTTCCTCAGGGAAATAACCATATTAa
gi|3 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATTTAATTCACTT-------A---ATATT-------------------GAGTG-AATTAAAT-TGAACTG
gi|30 : TTCATTCAAAAAT-CTTCCTCAGGGAA-TAATCATATTg
gi|31 : taTTCATTCAAAAAT-CTTCCTCAGGGAAGTAATCATAT
gi|32 : aACTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTAg
gi|33 : tTCAAAAAT-CTTCCTCAAGGAAGTGATCATATTA
gi|34 : AAAAAT-CTACCTCAGGGAAGTAACCATATTAC
gi|36 : TTTTCATTCAAAAAT-CTTCCTCAGGGAAG
gi|4 : taTTTTCATTCGAAAGT-CTTCCTCGAGTAAGTAAATATATCATA-TAAGTTCAA
gi|5 : ttaTTTCCATTCAAAAAT-CTTCCTCAGGGAAGTAGATATATAACA-TATGTTCAA--AAAATCACTC-------ATTGTTATT-------------------TAGTG-Aataatcatgatgagtggacttgtttacaat
gi|6 : taTTTTCATTCAAAAAT-CTTCCTCAGGGAAGTAACCATATTACA-CAAGTTCAATGT----------------A---ATATT-------------------GAGTG-AATTAAAT-TGAAt
gi|7 : TTCAAAACT-TTTCCTCAGGGAAGTAAATATATCACA-TAAATTCAAATCAATTTGCTA-------A---TTATT-------------------
gi|8 : TTTCATTCAAAA-T-TTTCC-CAGGGAAGTGAATATATCACA-TACGTTCAA-ATAA--CACTC-------A---TCATT-------------------TAGTtatttgaaa
gi|9 : TTTTCATTCAAAAAT-ATTCCTCAGGGAAGTAATCATATGACA-CAAGTTCAGTTTAATTCACTC-------A---ATATT-------------------ttcat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CAAGTTCCCATTTTCCTCTTCGTTAGGAGCGT