lowQualScore : 33333333333333333333333 2222222222222 11111111
lowQualScore : 333 3333 1 1 1 1 88888888888888 11 22 11 22 1 22 1 1 1 2 1 1 1 1 2 1 222 222 1 666666666 2 1 1 1 22 1 1 11 1 22222222222222222222222 1 1 11 11 1 1 222222 111 33 11 1 1 2222 1 2 33 1 2 1 11 2222 555555 1 22 1 1 1 4 1 1 2222222222222 1 1 222 222 1 1 1 44444444 22 22 6666666666666666666666666666666666666666666666666666666666666666 1 2222 55555555 66666666
lowQualScore : 555 6666 5 3 0 5 0 55555555555555 88 77 88 77 2 6 33 6 6 5 6 6 6 5 5 0 3 7 5 6 7 5 6 6 0 3 5 333 2 6 4 888 5 555555555 0 3 7 7 6 7 11 6 5 6 6 6 7 6 22 7 00000000000000000000000 5 7 3 77 88 2 4 2 2 6 7 3 0 6 2 999999 000 4 2 2 2 3 3 2 2 00 2 88 4 5 0 2222 2 5 4 0 6 3 3 00 2 0 4 0 7 00 2 3333 777777 7 6 11 6 5 5 6 7 6 0 5 6 5 0000000000000 6 6 6 7 6 6 7 111 444 7 7 7 6 55555555 6 6 11 33 8888888888888888888888888888888888888888888888888888888888888888 6 5 0 6 7 7 8888 66666666 4 11111111
lowQualScore : ... .... . . . . . .............. .. .. .. .. . . .. . . . . . . . . . . . . . . . . . . . . ... . . . ... . ......... . . . . . . .. . . . . . . . .. . ....................... . . . .. .. . . . . . . . . . . ...... ... . . . . . . . . .. . .. . . . .... . . . . . . . .. . . . . . .. . .... ...... . . .. . . . . . . . . . . ............. . . . . . . . ... ... . . . . ........ . . .. .. ................................................................ . . . . . . .... ........ . ........
lowQualScore : 000 0000 5 3 0 0 7 77777777777777 00 55 00 55 0 0 00 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 000 5 0 0 555 0 000000000 0 0 0 0 0 0 00 0 0 0 0 0 0 0 00 0 00000000000000000000000 0 0 0 55 55 5 0 5 5 0 0 0 5 0 5 555555 555 0 5 5 5 0 0 5 5 00 5 00 0 5 5 0000 5 0 0 0 0 0 0 55 5 5 0 0 0 00 5 5555 555555 0 0 00 0 0 0 0 0 0 0 0 0 0 0000000000000 0 0 0 0 0 0 0 000 000 0 0 0 0 00000000 0 0 00 00 0000000000000000000000000000000000000000000000000000000000000000 0 0 7 7 0 3 3333 00000000 0 22222222
consensus : AATGGACTCGTTTGCAGGNNGCTCGGTTACT-ACCGA-CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAATCCAAACAATGCCTCA----------TC--GACACTCAACATGTTGAGTGTCTAGACACTCAACATGTTGAGTGTCTGATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACCAGACACTCAACATATAGTGTCTAGGCGNTCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACCAGACACTCAACATATAGTGTCTAGACGNTCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTCCAAANAATGCCNCTGAAACAGTACAGCGCCCTCTTGAAC-AGACACTCAACATATAGTGTCTAGACGNTCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCNCCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTANTNANACGGTTCNTTGCTATATTTATTGCCGCCTGNTTGGCNGGAAAACGTCATGCCTCTNGTTATGACCACATTACTGTAACNNNGGGCCAATACTGATGGATAATTAACAACNATCCCAGTGCTGTATAANANTATCTTGNTTCATGCGACTTNGCCATGCTGANAANAGATACCCTNTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATNCTGTAGCNAGGTCTAACCTTAAAAGTGCNACTGCAAGCTCGCAAAAGTGGCAAATTNGATCGCCCACCTTCATAATTCTACTGAAGCGGNCTTTCCCCGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAGCGANANCCNTCTTCANACCTCAGCTTCATTNATATCCCATCATCTACNGACAAAAAATTGCCATTACCCNTATCNACTTGCCAAATTGTTCAACGTATATATTGTAACCAGGACCTCACAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------GCTCCCAGCTCAGGTATATTGGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATTAATCGGGGTTTTTATT----TTTTA-A-----TTTAGATTATTNGGGATGGGGATTTCGGATC-T---CAGTGGCAGTCAAGTT
Reference ( gi|1 ) : AATGGACTCG---GCAGGTAATTCAGTTACT-ACTGA-CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TT--GACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGTCTGATGATCAAAAGATGATATAGGAATAAATAAAATTATCACATTCCAAAGAATGTCACTGAATCAATACAACACCTGCTTTAACTAGACACTCAACATATAGTGTCT-GATGATCAAAAAATGATATTGGAATAAAGAAAATTGTCACATTCCGAAGAGTGTCACTGAATCTGTACAACACATTCTTGAACTAAACACTCAACATATAATGTCT-GATGATCAAACAATTAAATAGGAATAAAGAAAATTGTTACATTCCAAAGAATACCACTGGAACAGTACAACACCTT---GAACTAGACACTCAACATATAGTGTCT-GATGATCAAAAAATGATATAGGAAAAAAGAGAATTATCACTTTCCAAAGAATGTCACGGAATCAGTACAACACCTTCTTGAACTACTATTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTATTAACATGTAGCCAATGGTAACAAATGTGCGCTATTATGATTAAAAACCAAAACAACAAAAAACAAAACACATTAGTGATTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCCTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATCTTTTGCCACCTGTTTGGCGGAAAAATGTCATGTCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAACAAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACCATTGCAAGCTCGC-AA-GTGGCAAATTGGATCGTCCACCTTCATAATGTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAGATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTCATATCCCATCATCTACTGACAAAA-ATTGCCATAACCCACATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAAAATTGTTCTTCACTAGCATAGCGCATCATCCCGCAACGCATTCTTTCGTAGCACTGCACCAATGCTACTAAAAGTGTATTGGCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGAGTTTAGTACACCAAACATTTGCTTATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGCTTGTTTTCTTAAATGGAGATAATGAAAATCAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCAATGACTGTCCAAAAGTCATTGAACATGACAGCCATTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTATGATTAATTTCATAAATAAGATATAACAATTAGCAGCACTAATTGTCTTCAATAAATGTAATTAAAAAGAAGACACGAGTTGAAATGCTCCCAGCTCAGGTATACTAGAGCATGTTCACTAGTTAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTAATGAGTATCAAGCAGTGTTTTTATT----TTTTATAGTGTTTTTAGATTATTTGGGATGGGGATTTCGG--------CAGTGGCAGTCAAGTT
gi|15 : AATGGACTCG---GCAGGAAGCTCAGTTAGT-ACCGA-CGACCTGC-AAACGAGTCCATCACCAAATAACAAACGAAATAGAGCCGTAAACAAATCCAAACAATGC
gi|15 : ATGGACTCGTTTGCAGGTCG-TCGG-TACTAACTGAGCTTCCTGC----CGAGTCCAt
gi|14 : aaTACT-ACTGA-CGACCAGCGAAACGAGTCTACCGCCATATAATCAGCAACATAGAGCCGTAAACAAATCCAAACAATGCCTCAACATATAGCGTCCAGACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGcaccaaataacaaacgaaatagagccgtaaacaaatccaaacaatgct
gi|2 : -CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TA--GACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGTCTAATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACTAGACACTCAACATATAGTGTCT-GGTGATCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACTAGACACTCAACATATAGTGTCT-GATGATCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTTCAAAGAATGCCACTGAAACAGTACAACACCTTCTTGAACAAGACACTCAACATATAATGTCT-GATGATCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCATTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCACCTGTTTGGCTGGAAAATGTCATGCCTTTGGTTATGACCATAT------AACTAGGGGCCAATACTGATGGATAATTAACAACAATCCCAGTGCTGTATAAAATTATCTTGCTTCATACGACTTCGCCATGCTGAAAACAGATATCCTGTTAATGGAATCTTATTCAAATGACAAAACAAGCGATATT--AGCTAGGTCTAACCTTAAAAGTACTATTGCAAGCTTAT-AAAGTGGCAAATTTGATTGTCCACCTTCATAATTCTACTGAAGCGGTC-TTCCCCGTTTAATCAATTCTAAATTACTTGATAGTATGATAGCGAAACCCCTCTTCACACCTCAGCTTCATTAATATCCCATCATCTACTGACAAAAAATTGCCATTACCCATATCTACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------GCTCCCAGCTCAGGTATATTGGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAAGCAGTGTTTTTATT----TTTTATAGTGTTTTTAGATTATTTGGGATGGGGATTTCGG--------CAGTGGCAGTCAAGT
gi|2 : TCA----------TTA-GACACT--ATATGTTGAGTGTCTAGACACT--ATATGTTGAGTGTCT-ATGA
gi|14 : cgacctgcgaaacgagtccaccgccaaataatcagcgaaatagagccgtaaacaaacccaaacaatgccCACT--ATATGTTGAGTGTCTAGACACT--ATATGTTGAGTGTCTGtcaaaaggtattataagaataaataaaattgtaacattccaaagaatgccactgaatcagtacaacactttcttgaactagacactcaacatatagtgtctggtgatcaaaaaatgatataggaataaagaaaattgtaacattccaaagagtgtcactgaatcagtacaacaccttcttgaactagacactcaacatatagtgtctgatgatcaaaaaatgatataggaataaagaaaattgttacatttcaaagaatgccactgaaacagtacaacaccttcttgaacaagacactcaacatataatgtctgatgatcaaaaattgatattggaaaaaagaaaattatcacattccaaagaatgtcgaggaatcagtataacacattcttgaactactgtttttatgcatcaacatacaactccgtcttggcttccaattaatcaagttttaacatgtagccaatggtagcaaatgcacgcttttatgattaaaaagccccattcgtgaatgtggatccggatacataatatactgtcaccatgcttttaacaccattgaagctgtttatgtactagtagtaacacggttcgttgctatatttattgccacctgtttggctggaaaatgtcatgcctttggttatgaccatataactaggggccaatactgatggataattaacaacaatcccagtgctgtataaaattatcttgcttcatacgacttcgccatgctgaaaacagatatcctgttaatggaatcttattcaaatgacaaaacaagcgatattagctaggtctaaccttaaaagtactattgcaagcttataaagtggcaaatttgattgtccaccttcataattctactgaagcggtcttccccgtttaatcaattctaaattacttgatagtatgatagcgaaacccctcttcacacctcagcttcattaatatcccatcatctactgacaaaaaattgccattacccatatctacttgctaaattgttcaacgtagtaaccaggacctcataaaaatggtaccagggcctcattaagcaatactgttcttcaacagcatagcacatcatcccgcaacgcattctttcttagcactgcaccaatgctactaaaagtgtattgtctgacaataatgcactacctagatagttagaaagccatcccaaggcatcatttctctgcgggtttagtacaccaaacatttgctaatcaggaattgatcgtaaatttaacgtttctgtggtgtgccatgtttgcttcggaaaataactgcaccaaaatcaccagtgattgttttcttgaatggagataatgaaaataaaaacctatcaattccgacattgtctcgtataacggacataaaatgctctactggacccattgactgtccaaaagttattgaacataactgcaagtttcaaattctgtactagtccataattcattgaataattaagtttaatttcataaataagatataacaattagcagcacttattgacttcaataaatgtaataaaaaagaagacgcgagctcccagctcaggtatattggattatgttcacaggttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatataaaggcttgatgattatcaagcagtgtttttattttttatagtgtttttagattatttgggatggggatttcggcagtggcagtcaagt
gi|14 : tactactgacgaccagcgaaacgagtctaccgccatataatcagcaacatagagccgtaaacaaatccaaacaatgcctcaacatatagcgtcCCAGACACTCAACATATAGTGTCTAGACACTCAA
gi|14 : tactactgacgaccagcgaaacgagtctaccgccatataatcagcaacatagagccgtaaacaaatccaaacaatgcctcaacatatagcgtCCAGACACTCAACATATAGTGTCTAGACACTCAAcatatagtg
gi|14 : tactactgacgaccagcgaaacgagtctaccgccatataatcagcaacatagagccgtaaacaaatccaaacaatgcctcaacatatagcgtTCCAAACAATGCCTC---AACA-TATAGCGTCC---------AGACACTCAACATATAGTGTCTAGACACTCAAcatatagtg
gi|14 : tactactgacgaccagcgaaacgagtctaccgccatataatcagcaacatagagccgtaaacaaaCTAGACACTCAACATATAGTGcatatagtg
gi|7 : tactactgacgaccagcgaaacgagtctaccgccatataatcagcaacatagagccgtaaacaaatccaaacaatgcctcaacatatagcgtccagacactcaacatatagtgtATATACTGTCCCCATGCTTTTAATACAGTTGAAGCTGT--ATATACTAGTATTTAAACGGTTCTTTGCTATATTTATTGCCGCCTGGTTGGCAGAAAAACGTCATGCCTCTCGTTATGACCACATTACTGTAACATTGGGCCAATACTGATAGATAATTAACAACTATCCCAGTGCTATATAACAGTATCTTAGTTCATGCGACTTAGCCATGCTAACAAAAGATACTTTTTTAATGAAGCCTTATTTAAATGACAAAACAAGCGATCCTGTAGCAAGGTCTAACCTT-AAAGTGTAACTACAAGCTCGCAAA-GTGGCAAATTGGATCGCCCACCTTCATAATTTTACTGAAGCGGACTTTTCCTGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAACGACAACCA-CTTTAGACCTCAGCTTCATTTATATCCCATCATCTACAGACAAAA-ATTGCCATTACCTTTATCGA----CCAAATTGTTCAACATATATATTATAACTAAAACCTCACA
gi|4 : ATATTAAGACTTGATGATTATTAATCAGGGTTTG-ATT----TTTT---------TTATATTATTAGGGATGGGGATTTCGGATCGT---TAGTGGCAGTCCAGTT
gi|5 : ATAAAAAGGCTTGATGGTCATTAATCGGGTTTTTTATTAGACTTTTAGA-----TTTGGATAATTAGTGATGGGGATTTCGGATTTTTGTTAGTGGCGGGCAAGTTgttaggatgctgggagatggtacagagaaacgctagttaatttttttttgaatataagtctaaaaaccgtgtagaaaagtatgtaaaagagtgaggaactttcctattatgttgtatctactttcatcaaagtagaactagacatttcatacagaaatacactttatattacaagcagtggggttgctgatccttcatcttatagctaacggactgcaaacgtatatcgcccatttcatacataaacgtttatattgcaagccacctgatagactatgcccttaaaattgaaggccatttcccattgctacccactctgacagtataatttccaatcacgtggctgccggattcttattttcaatttgagcctgtattatacaccatacctttttcagcttaggccccaatttctcccattatactccctttcatgtatcctatatgatttttttataa
gi|3 : ccattattgagctcccggtctgtagtccaaaataaggacagggtcataaattactgtatactttgaggatgaagcattgaatcagaggcatagcataatgctgcgaggctcctttgtacagatatatacacagaagcatggtcacatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtTTGGGATGGGGATTTCGG--------CAGTGGCAGTCAAGTTgttaggttgttgggatttgttctgagaaacaggagttactttgttttaaatatgaatcataaaaccgtgtatgtataagagagagaaacgcccatactatattgtatatattttcattgaagtagaactagacatttagtatagatataaacattatattacaagcagtgggatttctgagttttatgatcgcctccaaatttgtaa
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTACATAGTTCCATTATTGAGCTCCAGGTCTGTAGTCCAAATTAAGGACAGAGTCATAAATTACTGTGAATTTCGAGGAATGGGTCAATATTGACTGTTGATGAGGCATTGAATCAGGAGCACTCCATAATGCTGCGACGCTTCTCTGTACAGTTATATACACTGCAGATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGCTTGATAATAATTAATCAAAGAAGACGATGGCGATTCGGATTTTGGTTGGTTGGTTGTGGTCTAGTTGTTAGGTTGTTAAAATGGGAAATTGCGCAATGAACCAGGAGTGACTTTGTTGAATATGAATCCTTAAACCCGTGCAGAAAGACATGTAAAAACGTGAGAAACTTTCCTGTTATATTATATATATTTTCATTAAAGTAGAACAGACTTTTAGAATAGAAATAAACCTTATACTACAAACAGTTGGATTTCAGATTTTATCATTTCTCCTAAATTTGTA
Unaligned ( gi|8 ): AGAATTACAAAATTTCATTATTGTAGTCAAAACTAAAGAAAATAGTCATAAATTTCTGTGAACTTTGAGGATAGGGGTCAATACTGGTTGGAGATCAAACAACATACTACTGCGAGGCTCCTTTGTACAAATATTTACACATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCTCATGGTATATAAAGGCTTGATGATAATCAATCGTCTTTGTAGGATTAGTTTTTAAAAGGATGGTTCGGATTTCGATTAGTTAGTTGCGATCCAGTTGTTACGTTGTGGGGAGATTGTTCAGAGAAACAGGATTTAATGAAACATCAAACCGTGTAGAAAGGTATGTAAAAGAATGAGGAACTTTCCTATTATGTTGAATATATTTTCATTAAAGTAGAATATTTAGTATAGAAATAAACATTATATTACAAGCAGTGGAATTTTCGATTCATATAATTTCTCAAAAATTTGTTAAAA
Unaligned ( gi|9 ): AGAATTACAAAATTTCATTATTGTAGTCAAAACTAAAGAAAAGAGTAATAAATTTCTGTGAACTTTGAGGATAGGGGTCAATACTGGTTGGAGATCAAACAACATACTACTGCGAGGCTCCTTTGTACAAATATATACTAAAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCTCATGGTATATAAAGGCTTGATGATAATCAATCGTCTTTGTAGGATTAGTTTTTAAAAGGATGGTTCGGATTTCGATTAGTTAGTTGCGATCCAGTTGTTACGTTGTGGGGAGATTGTTCAGAGAATCAGGATTTAATGAAACATCAAACCGTGTAGAAAGGTATGTAAAAGAATGAGGAACTTTCCTATTATGTTGTATATATTTTCATTAAAGTAGAATATTTAGTATAGAAATAAACATTATATTACAAGCAGTAGAATTTTCGATTCATATAATTTCTCAAAAATTTGTTAA
Unaligned ( gi|10 ): CCCATTTTGTGAATAGCCAATGGTATTACGTACGGTTCTTGAATAAAATATTAAATAAACCAATGTCAACATACTGACTATAGCAATCATACTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTCTTCCAGAATCAATATAATTTGCTTTTCTCCTTTCTTTTTTTTCTTTCTTAATTTAGTGTGTCTTTCCTCATTTAAAAAAAAAATAAAACAAAATTATTTCATCACGTTAATATCATGATTAAAGACGTATTGAACTATTTTATTGCAATGCTGTACAAAATTGTTTCTACTGTGCCCC
Unaligned ( gi|11 ): CACTGACACATATTCACATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGGAGCATGTTCACATGTCGGGAGAATGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACAAAGGCTTGATGATTGTAATCAGGGTTGTATTAAGGATTAGTTTCAGGATGGAGGATTCGGATGTTTGCTAGTTAGTGGCGGTACTGTTGTTAGGTTGTTGAAAGATAGTTCAGAGAAACTGAAGTAACTTTGTTTTGAATATGAACCATGAAAGAAAAATACATGTGTATGTAAAAAAGTGAAGAACTTTCATTA
Unaligned ( gi|12 ): AAAACCAACCCCTTGAGTTATTAATCCCTCACTATTAAGCAAAATTTCATTGAGTGCAAGTGTGTATCGCCCATTAAATACATAAATATTGATATTGACAAGCCATCTATGCCCTTACTATTGAAATATATTTCCCATTGTTCCCCGGGCTGTTATACTAGTGAAGCCATATATATCAGAAACTGCTCTGACAGTATAACATCCAACCATCTGGCTGCCAGTGTTATGGACATTTTGACCCC
Unaligned ( gi|13 ): TTACATAGTTCAATTATTGAGCTCCAGATCTGTAGTCCAAAATAAGGACAGAGTCATAAATTACTGTGGACTTTGAGGATAGGGGTCAATACTTGCTGGAGATGAAGCATTAAATCAGGAGCATTATATAATGCTGCGAGGCTCCTTTGTACAAATATAAATATTGAAGCATGTTCACA
Unaligned ( gi|16 ): TTACATAGTTCCATTATTGGGCTCCAGGTCTGTCGTCCAAAATAAGGACAGAGTCATAAATTACTGTGAACTTTGAGGATA
Alignments
lowQualScore : 1111111111111111111 1111111111111
lowQualScore : 777 44444444444444 55 55 4 4 222 333 4 5555555555555555555 2 22 2 555555 2 1111111111111 5555555555 1 2222 66666666666666666666666666666666666666666666666666666666666666 111 888888888888888888888888888888888888 111 666666666666
lowQualScore : 000 22 6 0 2 88888888888888 6 55 6 55 4 3 3 2 6 0 6 1 4 3 4 2 6 0 6 1 3 2 4 1 1 6 6 888 111 0 6 1 4 4 4 3 3 4 4 2 5555555555555555555 2 2 4 1 3 7 1 1 1 1 0 1 1 0 0 0 1 0 7 333 1 1 1 11 0 1 1 1 0 1 11 6 1 7 0 1 0 3 7 1 0 0 1 7 7 0 0 1 1 44 1 1 1 3 1 1 6 0 888888 0 4 3 3 3 4 0 3 3 0000000000000 4 4 3 2 4 4 4 4 4 1111111111 3 8888 88 3 22222222222222222222222222222222222222222222222222222222222222 0 444 5 000000000000000000000000000000000000 1 777 2 555555555555 1
lowQualScore : ... .. . . . .............. . .. . .. . . . . . . . . . . . . . . . . . . . . . . . ... ... . . . . . . . . . . . ................... . . . . . . . . . . . . . . . . . . . ... . . . .. . . . . . . .. . . . . . . . . . . . . . . . . . . .. . . . . . . . . ...... . . . . . . . . . ............. . . . . . . . . . .......... . .... .. . .............................................................. . ... . .................................... . ... . ............ .
lowQualScore : 000 00 0 7 5 88888888888888 0 00 0 00 0 0 0 5 0 0 0 0 0 0 0 5 0 0 0 0 0 5 0 0 0 0 0 555 000 0 0 0 0 0 0 0 0 0 0 5 0000000000000000000 5 5 0 0 7 3 0 0 0 0 7 0 0 7 7 7 0 7 3 000 0 0 0 77 7 0 0 0 7 0 77 7 0 3 7 0 7 7 3 0 7 7 0 3 3 7 7 0 0 77 0 0 0 7 0 0 7 7 777777 7 0 0 0 0 0 0 0 0 0000000000000 0 0 0 5 0 0 0 0 0 7777777777 3 3333 00 7 00000000000000000000000000000000000000000000000000000000000000 6 999 0 999999999999999999999999999999999999 0 555 5 444444444444 3
consensus : AATGGACTCG---GCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCT-GGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCT-GATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCT-GATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGC-AAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTCTTTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGAC-AAAAATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-----T----TTAGTGGCGGTCAAGTT
Reference ( family-347 ) : AATGGACTCGTTTGCAGGNNGCTCGGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAATCCAAACAATGCCTCA----------TC--GACACTCAACATGTTGAGTGTCTAGACACTCAACATGTTGAGTGTCTGATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACCAGACACTCAACATATAGTGTCTAGGCGNTCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACCAGACACTCAACATATAGTGTCTAGACGNTCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTCCAAANAATGCCNCTGAAACAGTACAGCGCCCTCTTGAAC-A-GACACTCAACATATAGTGTCTAGACGNTCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCNCCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTANTNANACGGTTCNTTGCTATATTTATTGCCGCCTGNTTGGCNGGAAAACGTCATGCCTCTNGTTATGACCACATTACTGTAACNNNGGGCCAATACTGATGGATAATTAACAACNATCCCAGTGCTGTATAANANTATCTTGNTTCATGCGACTTNGCCATGCTGANAANAGATACCCTNTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATNCTGTAGCNAGGTCTAACCTTAAAAGTGCNACTGCAAGCTCGCAAAAGTGGCAAATTNGATCGCCCACCTTCATAATTCTACTGAAGCGGNCTTTCCCCGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAGCGANANCCNTCTTCANACCTCAGCTTCATTNATATCCCATCATCTACNGACAAAAAATTGCCATTACCCNTATCNACTTGCCAAATTGTTCAACGTATATATTGTAACCAGGACCTCACAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATTAATCGGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-----C----TCAGTGGCAGTCAAGTT
gi|1 : AATGGACTCG---GCAGGTAATTCAGTTACTACTGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TT--GACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGTCTGATGATCAAAAGATGATATAGGAATAAATAAAATTATCACATTCCAAAGAATGTCACTGAATCAATACAACACCTGCTTTAACTAGACACTCAACATATAGTGTCT-GATGATCAAAAAATGATATTGGAATAAAGAAAATTGTCACATTCCGAAGAGTGTCACTGAATCTGTACAACACATTCTTGAACTAAACACTCAACATATAATGTCT-GATGATCAAACAATTAAATAGGAATAAAGAAAATTGTTACATTCCAAAGAATACCACTGGAACAGTACAACACC---TTGAACTA-GACACTCAACATATAGTGTCT-GATGATCAAAAAATGATATAGGAAAAAAGAGAATTATCACTTTCCAAAGAATGTCACGGAATCAGTACAACACCTTCTTGAACTACTATTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTATTAACATGTAGCCAATGGTAACAAATGTGCGCTATTATGATTAAAAACCAAAACAACAAAAAACAAAACACATTAGTGATTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCCTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATCTTTTGCCACCTGTTTGGCGGAAAAATGTCATGTCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAACAAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACCATTGCAAGCTCGC--AAGTGGCAAATTGGATCGTCCACCTTCATAATGTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAGATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTCATATCCCATCATCTACTGAC-AAAAATTGCCATAACCCACATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAAAATTGTTCTTCACTAGCATAGCGCATCATCCCGCAACGCATTCTTTCGTAGCACTGCACCAATGCTACTAAAAGTGTATTGGCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGAGTTTAGTACACCAAACATTTGCTTATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGCTTGTTTTCTTAAATGGAGATAATGAAAATCAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCAATGACTGTCCAAAAGTCATTGAACATGACAGCCATTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTATGATTAATTTCATAAATAAGATATAACAATTAGCAGCACTAATTGTCTTCAATAAATGTAATTAAAAAGAAGACACGAGTTGAAATG-CTCCCA-GCTCAGGTATACT----AGAGCATGTTCACTAGTTAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTAATGAGTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG-------------CAGTGGCAGTCAAGTT
gi|11 : ATATACAAAGGCTTGATGATTG-TAATCAGGG-TTGTA----------------TTA-A--------GGATTAGTTTCAGGATGG---AGGATTCGGATGTTTGCTAG-TTAGTGGCGGT
gi|14 : cactgacacatattcacatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattggagcatgttcacatgtcgggagaatgttgggatcacatgatgtgaaatgctgccatcttagtTACTACTGACGACCAGCGAAACGAGTCTACCGCCATATAATCAGCAACATAGAGCCGTAAACAAATCCAAACAATGCCTCAACATATAGCGTCCAGACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGactgttgttaggttgttgaaagatagttcagagaaactgaagtaactttgttttgaatatgaaccatgaaagaaaaatacatgtgtatgtaaaaaagtgaagaactttcatta
gi|15 : AATGGACTCG---GCAGGAAGCTCAGTTAGTACCGACGACCTGC-AAACGAGTCCATCACCAAATAACAAACGAAATAGAGCCGTAAACAAATCCAAACAATGC
gi|2 : CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TA--GACACTCAACATAT--AGTGTCTAGACACTCAACATAT--AGTGTCTAATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACTAGACACTCAACATATAGTGTCT-GGTGATCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACTAGACACTCAACATATAGTGTCT-GATGATCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTTCAAAGAATGCCACTGAAACAGTACAACACCTTCTTGAAC-AAGACACTCAACATATAATGTCT-GATGATCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCATTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCACCTGTTTGGCTGGAAAATGTCATGCCTTTGGTTATGACCATAT------AACTAGGGGCCAATACTGATGGATAATTAACAACAATCCCAGTGCTGTATAAAATTATCTTGCTTCATACGACTTCGCCATGCTGAAAACAGATATCCTGTTAATGGAATCTTATTCAAATGACAAAACAAGCGATATT--AGCTAGGTCTAACCTTAAAAGTACTATTGCAAGCTTATAAA-GTGGCAAATTTGATTGTCCACCTTCATAATTCTACTGAAGCGGTCTT-CCCCGTTTAATCAATTCTAAATTACTTGATAGTATGATAGCGAAACCCCTCTTCACACCTCAGCTTCATTAATATCCCATCATCTACTGACAAAAAATTGCCATTACCCATATCTACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG-------------CAGTGGCAGTCAAGTt
gi|3 : TTGGGATGG---GGATTTCGG-------------CAGTGGCAGTCAAGTT
gi|4 : ATATTAAGACTTGATGATTATTAATCAGGG-TTTGAT--------T----TTT---------TTTATATTA--TTAGGGATGG---GGATTTCGGAT-----CG---TTAGTGGCAGTCCAGTTgttaaggatgctgggaggttgtagagaaaggcgaattatttgttttgaatacgagtcataaaaccatgtagaaaagtatgtaaaacagtgaagaactttcctattatgttgtatatatttttctaaagtagaactagatatctaatatggaaataaactttattttacaagcaatgggattgctgatttttttaatttcccttcagttgctcatccttcatcttatagcaaattgactgcaagtgtgtattacccatttcatacctaaacgtttatattgtcaagtcaccttatagaccacgcccttgaaactgaaggctatttcccattgctccaaactctgacagtataatgtccaatcacctggctgccggatacctatcctcaatttgagcctgcattactcgctataccttcttcatctaggtccccatttctcattatttaatgtagtaagtaattttcttgaataaaatattaattaaaccaaggtcaacatactgactagcaatcatacccaaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaaatatatagttataaattaaaatctgtatctttttctccaagattcagtaagtttacttttcatctttttattaatttaaataatgtgtctttcttcattttacaaaattaaaataaaattatttcatattgttaatgtcatgatgtaatgaatacattttattgtagtactgtgcaaaatgtctgtgctgtgccccttta
gi|5 : GCGA--------GGCTCCTTTGTACAGATATATACACAGAAGCATGGTCACATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAAAAAGGCTTGATGGTCATTAATCGGGTTTTTTAT--------TAGACTTTTAGA-----TTTGGATAA--TTAGTGATGG---GGATTTCGGAT-----TTTTGTTAGTGGCGGGCAAGTTgttaggatgctgggagatggtacagagaaacgctagttaatttttttttgaatataagtctaaaaaccgtgtagaaaagtatgtaaaagagtgaggaactttcctattatgttgtatctactttcatcaaagtagaactagacatttcatacagaaatacactttatattacaagcagtggggttgctgatccttcatcttatagctaacggactgcaaacgtatatcgcccatttcatacataaacgtttatattgcaagccacctgatagactatgcccttaaaattgaaggccatttcccattgctacccactctgacagtataatttccaatcacgtggctgccggattcttattttcaatttgagcctgtattatacaccatacctttttcagcttaggccccaatttctcccattatactccctttcatgtatcctatatgatttttttataa
gi|6 : ccattattgagctcccggtctgtagtccaaaataaggacagggtcataaattactgtatactttgaggatgaagcattgaatcagaggcatagcataatgctCAATGCCTCA----------TC--AACAGTCAATATgttaggttgttgggatttgttctgagaaacaggagttactttgttttaaatatgaatcataaaaccgtgtatgtataagagagagaaacgcccatactatattgtatatattttcattgaagtagaactagacatttagtatagatataaacattatattacaagcagtgggatttctgagttttatgatcgcctccaaatttgtaa
gi|7 : ttacatagttccattattgagctccaggtctgtagtccaaattaaggacagagtcataaattactgtgaatttcgaggaatgggtcaATATACTGTCCCCATGCTTTTAATACAGTTGAAGCTGT--ATATACTAGTATTTAAACGGTTCTTTGCTATATTTATTGCCGCCTGGTTGGCAGAAAAACGTCATGCCTCTCGTTATGACCACATTACTGTAACATTGGGCCAATACTGATAGATAATTAACAACTATCCCAGTGCTATATAACAGTATCTTAGTTCATGCGACTTAGCCATGCTAACAAAAGATACTTTTTTAATGAAGCCTTATTTAAATGACAAAACAAGCGATCCTGTAGCAAGGTCTAACCTT-AAAGTGTAACTACAAGCTCGC-AAAGTGGCAAATTGGATCGCCCACCTTCATAATTTTACTGAAGCGGACTTTTCCTGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAACGACAACCA-CTTTAGACCTCAGCTTCATTTATATCCCATCATCTACAGAC-AAAAATTGCCATTACCTTTATCGA----CCAAATTGTTCAACATATATATTATAACTAAAACCTCACAaatcaggagcactccataatgctgcgacgcttctctgtacagttatatacactgcagatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgcttgataataattaatcaaagaagacgatggcgattcggattttggttggttggttgtggtctagttgttaggttgttaaaatgggaaattgcgcaatgaaccaggagtgactttgttgaatatgaatccttaaacccgtgcagaaagacatgtaaaaacgtgagaaactttcctgttatattatatatattttcattaaagtagaacagacttttagaatagaaataaaccttatactacaaacagttggatttcagattttatcatttctcctaaatttgta
gi|8 : ATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-----TAG--TTAGTTGCGATCCAGTT
gi|9 : agaattacaaaatttcattattgtagtcaaaactaaagaaaatagtcataaatttctgtgaactttgaggataggggtcaatactggttggagatcaaacaacatactactgcgaggctcctttgtacaaatatttacacatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccagctcatggtATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-----TAG--TTAGTTGCGATCCAGTTgttacgttgtggggagattgttcagagaaacaggatttaatgaaacatcaaaccgtgtagaaaggtatgtaaaagaatgaggaactttcctattatgttgaatatattttcattaaagtagaatatttagtatagaaataaacattatattacaagcagtggaattttcgattcatataatttctcaaaaatttgttaaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCATTTTGTGAATAGCCAATGGTATTACGTACGGTTCTTGAATAAAATATTAAATAAACCAATGTCAACATACTGACTATAGCAATCATACTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTCTTCCAGAATCAATATAATTTGCTTTTCTCCTTTCTTTTTTTTCTTTCTTAATTTAGTGTGTCTTTCCTCATTTAAAAAAAAAATAAAACAAAATTATTTCATCACGTTAATATCATGATTAAAGACGTATTGAACTATTTTATTGCAATGCTGTACAAAATTGTTTCTACTGTGCCCC
Unaligned ( gi|12 ): AAAACCAACCCCTTGAGTTATTAATCCCTCACTATTAAGCAAAATTTCATTGAGTGCAAGTGTGTATCGCCCATTAAATACATAAATATTGATATTGACAAGCCATCTATGCCCTTACTATTGAAATATATTTCCCATTGTTCCCCGGGCTGTTATACTAGTGAAGCCATATATATCAGAAACTGCTCTGACAGTATAACATCCAACCATCTGGCTGCCAGTGTTATGGACATTTTGACCCC
Unaligned ( gi|13 ): TTACATAGTTCAATTATTGAGCTCCAGATCTGTAGTCCAAAATAAGGACAGAGTCATAAATTACTGTGGACTTTGAGGATAGGGGTCAATACTTGCTGGAGATGAAGCATTAAATCAGGAGCATTATATAATGCTGCGAGGCTCCTTTGTACAAATATAAATATTGAAGCATGTTCACA
Unaligned ( gi|16 ): TTACATAGTTCCATTATTGGGCTCCAGGTCTGTCGTCCAAAATAAGGACAGAGTCATAAATTACTGTGAACTTTGAGGATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444 222 222 6666666666666666666 2 11 1 333333 1 4444444444444 5555555555 1 1111 111111111111111111111111111111111111111111111111111111111 888888888888888888888888888888888888 111 66666666666
lowQualScore : 1 0 2 88888888888888 1 1 1 1 1 1 1 1 1 1 1 111 222 1 1 1 1 1 1 1 1 8888888888888888888 1 1 1 3 7 0 3 0 7 6 7 1 7 3 77 1 3 6 888888 1 1 1 1 1 5 1 1 9999999999999 1 1 1 1 1 1 1 1 1 1111111111 3 7777 1 2 555555555555555555555555555555555555555555555555555555555 0 1 888 5 000000000000000000000000000000000000 1 777 2 11111111111 1
lowQualScore : . . . .............. . . . . . . . . . . . ... ... . . . . . . . . ................... . . . . . . . . . . . . . . .. . . . ...... . . . . . . . . ............. . . . . . . . . . .......... . .... . . ......................................................... . . ... . .................................... . ... . ........... .
lowQualScore : 0 7 5 88888888888888 0 0 0 0 0 0 0 0 0 0 0 000 000 0 0 0 0 0 0 0 0 0000000000000000000 0 0 0 7 3 7 7 7 3 7 3 0 3 7 00 0 3 7 333333 0 0 0 0 0 5 0 0 0000000000000 0 0 0 0 0 0 0 0 0 7777777777 3 0000 0 5 888888888888888888888888888888888888888888888888888888888 6 7 666 0 999999999999999999999999999999999999 0 555 5 99999999999 3
consensus : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTCTT-CCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
Reference ( family-347 ) : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTCTTTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
gi|1 : AATGGACTCGGCAGGTAATTCAGTTACTACTGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TT--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGATGATATAGGAATAAATAAAATTATCACATTCCAAAGAATGTCACTGAATCAATACAACACCTGCTTTAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATTGGAATAAAGAAAATTGTCACATTCCGAAGAGTGTCACTGAATCTGTACAACACATTCTTGAACTAAACACTCAACATATAATGTCTGATGATCAAACAATTAAATAGGAATAAAGAAAATTGTTACATTCCAAAGAATACCACTGGAACAGTACAACACCTT---GAACTA-GACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAAAAAAGAGAATTATCACTTTCCAAAGAATGTCACGGAATCAGTACAACACCTTCTTGAACTACTATTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTATTAACATGTAGCCAATGGTAACAAATGTGCGCTATTATGATTAAAAACCAAAACAACAAAAAACAAAACACATTAGTGATTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCCTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATCTTTTGCCACCTGTTTGGCGGAAAAATGTCATGTCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAACAAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACCATTGCAAGCTCGCAA-GTGGCAAATTGGATCGTCCACCTTCATAATGTTACTGAAGCGGTCTT-CCCCGTTTAATCAGTTCTAGATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTCATATCCCATCATCTACTGACAAAA-ATTGCCATAACCCACATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAAAATTGTTCTTCACTAGCATAGCGCATCATCCCGCAACGCATTCTTTCGTAGCACTGCACCAATGCTACTAAAAGTGTATTGGCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGAGTTTAGTACACCAAACATTTGCTTATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGCTTGTTTTCTTAAATGGAGATAATGAAAATCAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCAATGACTGTCCAAAAGTCATTGAACATGACAGCCATTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTATGATTAATTTCATAAATAAGATATAACAATTAGCAGCACTAATTGTCTTCAATAAATGTAATTAAAAAGAAGACACGAGTTGAAATG-CTCCCA-GCTCAGGTATACT----AGAGCATGTTCACTAGTTAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTAATGAGTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTT
gi|11 : TAAATT----GGAGCATGTTCACATGTCGGGAGAA---------------TGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACA----AAGGCTTGATGATTGT-AATCAGGG-TTGTA----------------TTA-A--------GGATTAGTTTCAGGATGG---AGGATTCGGATGTTTGCTAGTTAGTGGCGGT
gi|13 : cactgacacatattcacatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATATT----GAAGCATGTTCACAactgttgttaggttgttgaaagatagttcagagaaactgaagtaactttgttttgaatatgaaccatgaaagaaaaatacatgtgtatgtaaaaaagtgaagaactttcatta
gi|14 : ttacatagttcaattattgagctccagatctgtagtccaaaataaggacagagtcataaattactgtggactttgaggataggggtcaatacttgctggagatgaagcattaaatcaggagcattatataatgctgcgaggctcctttgtacaaatataaTACTACTGACGACCAGCGAAACGAGTCTACCGCCATATAATCAGCAACATAGAGCCGTAAACAAATCCAAACAATGCCTCAACATATAGCGTCCAGACACTCAACATATAGTGTCTAGACACTCAACATATAGTG
gi|15 : AATGGACTCGGCAGGAAGCTCAGTTAGTACCGACGACCTGC-AAACGAGTCCATCACCAAATAACAAACGAAATAGAGCCGTAAACAAATCCAAACAATGC
gi|2 : CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TA--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTAATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTTCAAAGAATGCCACTGAAACAGTACAACACCTTCTTGAAC-AAGACACTCAACATATAATGTCTGATGATCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCATTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCACCTGTTTGGCTGGAAAATGTCATGCCTTTGGTTATGACCATAT------AACTAGGGGCCAATACTGATGGATAATTAACAACAATCCCAGTGCTGTATAAAATTATCTTGCTTCATACGACTTCGCCATGCTGAAAACAGATATCCTGTTAATGGAATCTTATTCAAATGACAAAACAAGCGATATT--AGCTAGGTCTAACCTTAAAAGTACTATTGCAAGCTTATAAAGTGGCAAATTTGATTGTCCACCTTCATAATTCTACTGAAGCGGTCTT-CCCCGTTTAATCAATTCTAAATTACTTGATAGTATGATAGCGAAACCCCTCTTCACACCTCAGCTTCATTAATATCCCATCATCTACTGACAAAAAATTGCCATTACCCATATCTACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTt
gi|3 : TTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTT
gi|4 : ATATTAAGACTTGATGATTATTAATCAGGG-TTTGAT--------T----TTT---------TTTATATTA--TTAGGGATGG---GGATTTCGGAT-CG------TTAGTGGCAGTCCAGTTgttaaggatgctgggaggttgtagagaaaggcgaattatttgttttgaatacgagtcataaaaccatgtagaaaagtatgtaaaacagtgaagaactttcctattatgttgtatatatttttctaaagtagaactagatatctaatatggaaataaactttattttacaagcaatgggattgctgatttttttaatttcccttcagttgctcatccttcatcttatagcaaattgactgcaagtgtgtattacccatttcatacctaaacgtttatattgtcaagtcaccttatagaccacgcccttgaaactgaaggctatttcccattgctccaaactctgacagtataatgtccaatcacctggctgccggatacctatcctcaatttgagcctgcattactcgctataccttcttcatctaggtccccatttctcattatttaatgtagtaagtaattttcttgaataaaatattaattaaaccaaggtcaacatactgactagcaatcatacccaaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaaatatatagttataaattaaaatctgtatctttttctccaagattcagtaagtttacttttcatctttttattaatttaaataatgtgtctttcttcattttacaaaattaaaataaaattatttcatattgttaatgtcatgatgtaatgaatacattttattgtagtactgtgcaaaatgtctgtgctgtgccccttta
gi|5 : GCGA--------GGCTCCTTTGTACAGATATATACACAGAAGCATGGTCACATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAAAAAGGCTTGATGGTCATTAATCGGGTTTTTTAT--------TAGACTTTTAGA-----TTTGGATAA--TTAGTGATGG---GGATTTCGGAT-TTTTG---TTAGTGGCGGGCAAGTTgttaggatgctgggagatggtacagagaaacgctagttaatttttttttgaatataagtctaaaaaccgtgtagaaaagtatgtaaaagagtgaggaactttcctattatgttgtatctactttcatcaaagtagaactagacatttcatacagaaatacactttatattacaagcagtggggttgctgatccttcatcttatagctaacggactgcaaacgtatatcgcccatttcatacataaacgtttatattgcaagccacctgatagactatgcccttaaaattgaaggccatttcccattgctacccactctgacagtataatttccaatcacgtggctgccggattcttattttcaatttgagcctgtattatacaccatacctttttcagcttaggccccaatttctcccattatactccctttcatgtatcctatatgatttttttataa
gi|6 : ccattattgagctcccggtctgtagtccaaaataaggacagggtcataaattactgtatactttgaggatgaagcattgaatcagaggcatagcataatgctCAATGCCTCA----------TC--AACAGTCAATATgttaggttgttgggatttgttctgagaaacaggagttactttgttttaaatatgaatcataaaaccgtgtatgtataagagagagaaacgcccatactatattgtatatattttcattgaagtagaactagacatttagtatagatataaacattatattacaagcagtgggatttctgagttttatgatcgcctccaaatttgtaa
gi|7 : ttacatagttccattattgagctccaggtctgtagtccaaattaaggacagagtcataaattactgtgaatttcgaggaatgggtcaATATACTGTCCCCATGCTTTTAATACAGTTGAAGCTGT--ATATACTAGTATTTAAACGGTTCTTTGCTATATTTATTGCCGCCTGGTTGGCAGAAAAACGTCATGCCTCTCGTTATGACCACATTACTGTAACATTGGGCCAATACTGATAGATAATTAACAACTATCCCAGTGCTATATAACAGTATCTTAGTTCATGCGACTTAGCCATGCTAACAAAAGATACTTTTTTAATGAAGCCTTATTTAAATGACAAAACAAGCGATCCTGTAGCAAGGTCTAACCTT-AAAGTGTAACTACAAGCTCGCAAAGTGGCAAATTGGATCGCCCACCTTCATAATTTTACTGAAGCGGACTTTTCCTGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAACGACAACCA-CTTTAGACCTCAGCTTCATTTATATCCCATCATCTACAGACAAAA-ATTGCCATTACCTTTATCGA----CCAAATTGTTCAACATATATATTATAACTAAAACCTCACAaatcaggagcactccataatgctgcgacgcttctctgtacagttatatacactgcagatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgcttgataataattaatcaaagaagacgatggcgattcggattttggttggttggttgtggtctagttgttaggttgttaaaatgggaaattgcgcaatgaaccaggagtgactttgttgaatatgaatccttaaacccgtgcagaaagacatgtaaaaacgtgagaaactttcctgttatattatatatattttcattaaagtagaacagacttttagaatagaaataaaccttatactacaaacagttggatttcagattttatcatttctcctaaatttgta
gi|8 : ATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-TAG-----TTAGTTGCGATCCAGTT
gi|9 : agaattacaaaatttcattattgtagtcaaaactaaagaaaatagtcataaatttctgtgaactttgaggataggggtcaatactggttggagatcaaacaacatactactgcgaggctcctttgtacaaatatttacacatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccagctcatggtATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-TAG-----TTAGTTGCGATCCAGTTgttacgttgtggggagattgttcagagaaacaggatttaatgaaacatcaaaccgtgtagaaaggtatgtaaaagaatgaggaactttcctattatgttgaatatattttcattaaagtagaatatttagtatagaaataaacattatattacaagcagtggaattttcgattcatataatttctcaaaaatttgttaaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCATTTTGTGAATAGCCAATGGTATTACGTACGGTTCTTGAATAAAATATTAAATAAACCAATGTCAACATACTGACTATAGCAATCATACTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTCTTCCAGAATCAATATAATTTGCTTTTCTCCTTTCTTTTTTTTCTTTCTTAATTTAGTGTGTCTTTCCTCATTTAAAAAAAAAATAAAACAAAATTATTTCATCACGTTAATATCATGATTAAAGACGTATTGAACTATTTTATTGCAATGCTGTACAAAATTGTTTCTACTGTGCCCC
Unaligned ( gi|12 ): AAAACCAACCCCTTGAGTTATTAATCCCTCACTATTAAGCAAAATTTCATTGAGTGCAAGTGTGTATCGCCCATTAAATACATAAATATTGATATTGACAAGCCATCTATGCCCTTACTATTGAAATATATTTCCCATTGTTCCCCGGGCTGTTATACTAGTGAAGCCATATATATCAGAAACTGCTCTGACAGTATAACATCCAACCATCTGGCTGCCAGTGTTATGGACATTTTGACCCC
Unaligned ( gi|16 ): TTACATAGTTCCATTATTGGGCTCCAGGTCTGTCGTCCAAAATAAGGACAGAGTCATAAATTACTGTGAACTTTGAGGATA
Alignments
lowQualScore : 44444444444444 222 222 6666666666666666666 1 11 1 333333 1 4444444444444 5555555555 1 1111 777777777777777 888888888888888888888888888888888888 111 66666666666
lowQualScore : 1 0 2 88888888888888 1 1 1 1 1 1 1 1 1 1 1 111 222 1 1 1 1 1 1 1 1 8888888888888888888 1 1 1 3 7 0 3 0 7 6 7 1 7 3 77 1 3 6 888888 1 1 1 1 1 5 1 1 9999999999999 1 1 1 1 1 1 1 1 1 1111111111 3 7777 1 33 333333333333333 0 1 888 000000000000000000000000000000000000 1 777 2 11111111111 1
lowQualScore : . . . .............. . . . . . . . . . . . ... ... . . . . . . . . ................... . . . . . . . . . . . . . . .. . . . ...... . . . . . . . . ............. . . . . . . . . . .......... . .... . .. ............... . . ... .................................... . ... . ........... .
lowQualScore : 0 7 5 88888888888888 0 0 0 0 0 0 0 0 0 0 0 000 000 0 0 0 0 0 0 0 0 0000000000000000000 0 0 0 7 3 7 7 7 3 7 3 0 3 3 00 0 3 7 333333 0 0 0 0 0 5 0 0 0000000000000 0 0 0 0 0 0 0 0 0 7777777777 3 0000 0 22 888888888888888 6 7 666 999999999999999999999999999999999999 0 555 5 99999999999 3
consensus : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
Reference ( family-347 ) : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
gi|1 : AATGGACTCGGCAGGTAATTCAGTTACTACTGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TT--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGATGATATAGGAATAAATAAAATTATCACATTCCAAAGAATGTCACTGAATCAATACAACACCTGCTTTAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATTGGAATAAAGAAAATTGTCACATTCCGAAGAGTGTCACTGAATCTGTACAACACATTCTTGAACTAAACACTCAACATATAATGTCTGATGATCAAACAATTAAATAGGAATAAAGAAAATTGTTACATTCCAAAGAATACCACTGGAACAGTACAACACCTT---GAACTA-GACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAAAAAAGAGAATTATCACTTTCCAAAGAATGTCACGGAATCAGTACAACACCTTCTTGAACTACTATTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTATTAACATGTAGCCAATGGTAACAAATGTGCGCTATTATGATTAAAAACCAAAACAACAAAAAACAAAACACATTAGTGATTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCCTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATCTTTTGCCACCTGTTTGGCGGAAAAATGTCATGTCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAACAAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACCATTGCAAGCTCGCAA-GTGGCAAATTGGATCGTCCACCTTCATAATGTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAGATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTCATATCCCATCATCTACTGACAAAA-ATTGCCATAACCCACATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAAAATTGTTCTTCACTAGCATAGCGCATCATCCCGCAACGCATTCTTTCGTAGCACTGCACCAATGCTACTAAAAGTGTATTGGCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGAGTTTAGTACACCAAACATTTGCTTATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGCTTGTTTTCTTAAATGGAGATAATGAAAATCAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCAATGACTGTCCAAAAGTCATTGAACATGACAGCCATTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTATGATTAATTTCATAAATAAGATATAACAATTAGCAGCACTAATTGTCTTCAATAAATGTAATTAAAAAGAAGACACGAGTTGAAATG-CTCCCA-GCTCAGGTATACT----AGAGCATGTTCACTAGTTAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTAATGAGTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTT
gi|11 : TAAATT----GGAGCATGTTCACATGTCGGGAGAA---------------TGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATAC----AAAGGCTTGATGATTGT-AATCAGGG-TTGTA----------------TTA-A--------GGATTAGTTTCAGGATGG---AGGATTCGGATGTTTGCTAGTTAGTGGCGGT
gi|13 : cactgacacatattcacatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATATT----GAAGCATGTTCACAactgttgttaggttgttgaaagatagttcagagaaactgaagtaactttgttttgaatatgaaccatgaaagaaaaatacatgtgtatgtaaaaaagtgaagaactttcatta
gi|14 : ttacatagttcaattattgagctccagatctgtagtccaaaataaggacagagtcataaattactgtggactttgaggataggggtcaatacttgctggagatgaagcattaaatcaggagcattatataatgctgcgaggctcctttgtacaaatataaTACTACTGACGACCAGCGAAACGAGTCTACCGCCATATAATCAGCAACATAGAGCCGTAAACAAATCCAAACAATGCCTCAACATATAGCGTCCAGACACTCAACATATAGTGTCTAGACACTCAACATATAGTG
gi|15 : AATGGACTCGGCAGGAAGCTCAGTTAGTACCGACGACCTGC-AAACGAGTCCATCACCAAATAACAAACGAAATAGAGCCGTAAACAAATCCAAACAATGC
gi|2 : CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TA--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTAATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTTCAAAGAATGCCACTGAAACAGTACAACACCTTCTTGAAC-AAGACACTCAACATATAATGTCTGATGATCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCATTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCACCTGTTTGGCTGGAAAATGTCATGCCTTTGGTTATGACCATAT------AACTAGGGGCCAATACTGATGGATAATTAACAACAATCCCAGTGCTGTATAAAATTATCTTGCTTCATACGACTTCGCCATGCTGAAAACAGATATCCTGTTAATGGAATCTTATTCAAATGACAAAACAAGCGATATT--AGCTAGGTCTAACCTTAAAAGTACTATTGCAAGCTTATAAAGTGGCAAATTTGATTGTCCACCTTCATAATTCTACTGAAGCGGTC-TTCCCCGTTTAATCAATTCTAAATTACTTGATAGTATGATAGCGAAACCCCTCTTCACACCTCAGCTTCATTAATATCCCATCATCTACTGACAAAAAATTGCCATTACCCATATCTACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTt
gi|3 : TTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTT
gi|4 : ATATTAAGACTTGATGATTATTAATCAGGGTTTG-AT--------T----TTTT---------TTATATTA--TTAGGGATGG---GGATTTCGGAT-CG------TTAGTGGCAGTCCAGTTgttaaggatgctgggaggttgtagagaaaggcgaattatttgttttgaatacgagtcataaaaccatgtagaaaagtatgtaaaacagtgaagaactttcctattatgttgtatatatttttctaaagtagaactagatatctaatatggaaataaactttattttacaagcaatgggattgctgatttttttaatttcccttcagttgctcatccttcatcttatagcaaattgactgcaagtgtgtattacccatttcatacctaaacgtttatattgtcaagtcaccttatagaccacgcccttgaaactgaaggctatttcccattgctccaaactctgacagtataatgtccaatcacctggctgccggatacctatcctcaatttgagcctgcattactcgctataccttcttcatctaggtccccatttctcattatttaatgtagtaagtaattttcttgaataaaatattaattaaaccaaggtcaacatactgactagcaatcatacccaaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaaatatatagttataaattaaaatctgtatctttttctccaagattcagtaagtttacttttcatctttttattaatttaaataatgtgtctttcttcattttacaaaattaaaataaaattatttcatattgttaatgtcatgatgtaatgaatacattttattgtagtactgtgcaaaatgtctgtgctgtgccccttta
gi|5 : GCGA--------GGCTCCTTTGTACAGATATATACACAGAAGCATGGTCACATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAAAAAGGCTTGATGGTCATTAATCGGGTTTTTTAT--------TAGACTTTTAGA-----TTTGGATAA--TTAGTGATGG---GGATTTCGGAT-TTTTG---TTAGTGGCGGGCAAGTTgttaggatgctgggagatggtacagagaaacgctagttaatttttttttgaatataagtctaaaaaccgtgtagaaaagtatgtaaaagagtgaggaactttcctattatgttgtatctactttcatcaaagtagaactagacatttcatacagaaatacactttatattacaagcagtggggttgctgatccttcatcttatagctaacggactgcaaacgtatatcgcccatttcatacataaacgtttatattgcaagccacctgatagactatgcccttaaaattgaaggccatttcccattgctacccactctgacagtataatttccaatcacgtggctgccggattcttattttcaatttgagcctgtattatacaccatacctttttcagcttaggccccaatttctcccattatactccctttcatgtatcctatatgatttttttataa
gi|6 : ccattattgagctcccggtctgtagtccaaaataaggacagggtcataaattactgtatactttgaggatgaagcattgaatcagaggcatagcataatgctCAATGCCTCA----------TC--AACAGTCAATATgttaggttgttgggatttgttctgagaaacaggagttactttgttttaaatatgaatcataaaaccgtgtatgtataagagagagaaacgcccatactatattgtatatattttcattgaagtagaactagacatttagtatagatataaacattatattacaagcagtgggatttctgagttttatgatcgcctccaaatttgtaa
gi|7 : ttacatagttccattattgagctccaggtctgtagtccaaattaaggacagagtcataaattactgtgaatttcgaggaatgggtcaATATACTGTCCCCATGCTTTTAATACAGTTGAAGCTGT--ATATACTAGTATTTAAACGGTTCTTTGCTATATTTATTGCCGCCTGGTTGGCAGAAAAACGTCATGCCTCTCGTTATGACCACATTACTGTAACATTGGGCCAATACTGATAGATAATTAACAACTATCCCAGTGCTATATAACAGTATCTTAGTTCATGCGACTTAGCCATGCTAACAAAAGATACTTTTTTAATGAAGCCTTATTTAAATGACAAAACAAGCGATCCTGTAGCAAGGTCTAACCTT-AAAGTGTAACTACAAGCTCGCAAAGTGGCAAATTGGATCGCCCACCTTCATAATTTTACTGAAGCGGACTTTTCCTGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAACGACAACCA-CTTTAGACCTCAGCTTCATTTATATCCCATCATCTACAGACAAAA-ATTGCCATTACCTTTATCGA----CCAAATTGTTCAACATATATATTATAACTAAAACCTCACAaatcaggagcactccataatgctgcgacgcttctctgtacagttatatacactgcagatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgcttgataataattaatcaaagaagacgatggcgattcggattttggttggttggttgtggtctagttgttaggttgttaaaatgggaaattgcgcaatgaaccaggagtgactttgttgaatatgaatccttaaacccgtgcagaaagacatgtaaaaacgtgagaaactttcctgttatattatatatattttcattaaagtagaacagacttttagaatagaaataaaccttatactacaaacagttggatttcagattttatcatttctcctaaatttgta
gi|8 : ATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-TAG-----TTAGTTGCGATCCAGTT
gi|9 : agaattacaaaatttcattattgtagtcaaaactaaagaaaatagtcataaatttctgtgaactttgaggataggggtcaatactggttggagatcaaacaacatactactgcgaggctcctttgtacaaatatttacacatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccagctcatggtATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-TAG-----TTAGTTGCGATCCAGTTgttacgttgtggggagattgttcagagaaacaggatttaatgaaacatcaaaccgtgtagaaaggtatgtaaaagaatgaggaactttcctattatgttgaatatattttcattaaagtagaatatttagtatagaaataaacattatattacaagcagtggaattttcgattcatataatttctcaaaaatttgttaaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCATTTTGTGAATAGCCAATGGTATTACGTACGGTTCTTGAATAAAATATTAAATAAACCAATGTCAACATACTGACTATAGCAATCATACTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTCTTCCAGAATCAATATAATTTGCTTTTCTCCTTTCTTTTTTTTCTTTCTTAATTTAGTGTGTCTTTCCTCATTTAAAAAAAAAATAAAACAAAATTATTTCATCACGTTAATATCATGATTAAAGACGTATTGAACTATTTTATTGCAATGCTGTACAAAATTGTTTCTACTGTGCCCC
Unaligned ( gi|12 ): AAAACCAACCCCTTGAGTTATTAATCCCTCACTATTAAGCAAAATTTCATTGAGTGCAAGTGTGTATCGCCCATTAAATACATAAATATTGATATTGACAAGCCATCTATGCCCTTACTATTGAAATATATTTCCCATTGTTCCCCGGGCTGTTATACTAGTGAAGCCATATATATCAGAAACTGCTCTGACAGTATAACATCCAACCATCTGGCTGCCAGTGTTATGGACATTTTGACCCC
Unaligned ( gi|16 ): TTACATAGTTCCATTATTGGGCTCCAGGTCTGTCGTCCAAAATAAGGACAGAGTCATAAATTACTGTGAACTTTGAGGATA
Alignments
lowQualScore : 44444444444444 222 222 6666666666666666666 1 11 1 333333 1 4444444444444 5555555555 1 1111 777777777777777 888888888888888888888888888888888888 111 66666666666
lowQualScore : 1 0 2 88888888888888 1 1 1 1 1 1 1 1 1 1 1 111 222 1 1 1 1 1 1 1 1 8888888888888888888 1 1 1 3 7 0 3 0 7 6 7 1 7 3 77 1 3 6 888888 1 1 1 1 1 5 1 1 9999999999999 1 1 1 1 1 1 1 1 1 1111111111 3 7777 1 33 333333333333333 0 1 888 000000000000000000000000000000000000 1 777 2 11111111111 1
lowQualScore : . . . .............. . . . . . . . . . . . ... ... . . . . . . . . ................... . . . . . . . . . . . . . . .. . . . ...... . . . . . . . . ............. . . . . . . . . . .......... . .... . .. ............... . . ... .................................... . ... . ........... .
lowQualScore : 0 7 5 88888888888888 0 0 0 0 0 0 0 0 0 0 0 000 000 0 0 0 0 0 0 0 0 0000000000000000000 0 0 0 7 3 7 7 7 3 7 3 0 3 3 00 0 3 7 333333 0 0 0 0 0 5 0 0 0000000000000 0 0 0 0 0 0 0 0 0 7777777777 3 0000 0 22 888888888888888 6 7 666 999999999999999999999999999999999999 0 555 5 99999999999 3
consensus : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
Reference ( family-347 ) : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
gi|1 : AATGGACTCGGCAGGTAATTCAGTTACTACTGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TT--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGATGATATAGGAATAAATAAAATTATCACATTCCAAAGAATGTCACTGAATCAATACAACACCTGCTTTAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATTGGAATAAAGAAAATTGTCACATTCCGAAGAGTGTCACTGAATCTGTACAACACATTCTTGAACTAAACACTCAACATATAATGTCTGATGATCAAACAATTAAATAGGAATAAAGAAAATTGTTACATTCCAAAGAATACCACTGGAACAGTACAACACCTT---GAACTA-GACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAAAAAAGAGAATTATCACTTTCCAAAGAATGTCACGGAATCAGTACAACACCTTCTTGAACTACTATTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTATTAACATGTAGCCAATGGTAACAAATGTGCGCTATTATGATTAAAAACCAAAACAACAAAAAACAAAACACATTAGTGATTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCCTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATCTTTTGCCACCTGTTTGGCGGAAAAATGTCATGTCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAACAAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACCATTGCAAGCTCGCAA-GTGGCAAATTGGATCGTCCACCTTCATAATGTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAGATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTCATATCCCATCATCTACTGACAAAA-ATTGCCATAACCCACATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAAAATTGTTCTTCACTAGCATAGCGCATCATCCCGCAACGCATTCTTTCGTAGCACTGCACCAATGCTACTAAAAGTGTATTGGCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGAGTTTAGTACACCAAACATTTGCTTATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGCTTGTTTTCTTAAATGGAGATAATGAAAATCAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCAATGACTGTCCAAAAGTCATTGAACATGACAGCCATTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTATGATTAATTTCATAAATAAGATATAACAATTAGCAGCACTAATTGTCTTCAATAAATGTAATTAAAAAGAAGACACGAGTTGAAATG-CTCCCA-GCTCAGGTATACT----AGAGCATGTTCACTAGTTAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTAATGAGTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTT
gi|11 : TAAATT----GGAGCATGTTCACATGTCGGGAGAA---------------TGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATAC----AAAGGCTTGATGATTGT-AATCAGGG-TTGTA----------------TTA-A--------GGATTAGTTTCAGGATGG---AGGATTCGGATGTTTGCTAGTTAGTGGCGGT
gi|13 : cactgacacatattcacatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATATT----GAAGCATGTTCACAactgttgttaggttgttgaaagatagttcagagaaactgaagtaactttgttttgaatatgaaccatgaaagaaaaatacatgtgtatgtaaaaaagtgaagaactttcatta
gi|14 : ttacatagttcaattattgagctccagatctgtagtccaaaataaggacagagtcataaattactgtggactttgaggataggggtcaatacttgctggagatgaagcattaaatcaggagcattatataatgctgcgaggctcctttgtacaaatataaTACTACTGACGACCAGCGAAACGAGTCTACCGCCATATAATCAGCAACATAGAGCCGTAAACAAATCCAAACAATGCCTCAACATATAGCGTCCAGACACTCAACATATAGTGTCTAGACACTCAACATATAGTG
gi|15 : AATGGACTCGGCAGGAAGCTCAGTTAGTACCGACGACCTGC-AAACGAGTCCATCACCAAATAACAAACGAAATAGAGCCGTAAACAAATCCAAACAATGC
gi|2 : CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TA--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTAATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTTCAAAGAATGCCACTGAAACAGTACAACACCTTCTTGAAC-AAGACACTCAACATATAATGTCTGATGATCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCATTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCACCTGTTTGGCTGGAAAATGTCATGCCTTTGGTTATGACCATAT------AACTAGGGGCCAATACTGATGGATAATTAACAACAATCCCAGTGCTGTATAAAATTATCTTGCTTCATACGACTTCGCCATGCTGAAAACAGATATCCTGTTAATGGAATCTTATTCAAATGACAAAACAAGCGATATT--AGCTAGGTCTAACCTTAAAAGTACTATTGCAAGCTTATAAAGTGGCAAATTTGATTGTCCACCTTCATAATTCTACTGAAGCGGTC-TTCCCCGTTTAATCAATTCTAAATTACTTGATAGTATGATAGCGAAACCCCTCTTCACACCTCAGCTTCATTAATATCCCATCATCTACTGACAAAAAATTGCCATTACCCATATCTACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAAGCAGTGTTTTTAT--------T----TTTTATAGTGTTTTTAGATTA--TTTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTt
gi|3 : TTGGGATGG---GGATTTCGG------------CAGTGGCAGTCAAGTT
gi|4 : ATATTAAGACTTGATGATTATTAATCAGGGTTTG-AT--------T----TTTT---------TTATATTA--TTAGGGATGG---GGATTTCGGAT-CG------TTAGTGGCAGTCCAGTTgttaaggatgctgggaggttgtagagaaaggcgaattatttgttttgaatacgagtcataaaaccatgtagaaaagtatgtaaaacagtgaagaactttcctattatgttgtatatatttttctaaagtagaactagatatctaatatggaaataaactttattttacaagcaatgggattgctgatttttttaatttcccttcagttgctcatccttcatcttatagcaaattgactgcaagtgtgtattacccatttcatacctaaacgtttatattgtcaagtcaccttatagaccacgcccttgaaactgaaggctatttcccattgctccaaactctgacagtataatgtccaatcacctggctgccggatacctatcctcaatttgagcctgcattactcgctataccttcttcatctaggtccccatttctcattatttaatgtagtaagtaattttcttgaataaaatattaattaaaccaaggtcaacatactgactagcaatcatacccaaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaaatatatagttataaattaaaatctgtatctttttctccaagattcagtaagtttacttttcatctttttattaatttaaataatgtgtctttcttcattttacaaaattaaaataaaattatttcatattgttaatgtcatgatgtaatgaatacattttattgtagtactgtgcaaaatgtctgtgctgtgccccttta
gi|5 : GCGA--------GGCTCCTTTGTACAGATATATACACAGAAGCATGGTCACATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAAAAAGGCTTGATGGTCATTAATCGGGTTTTTTAT--------TAGACTTTTAGA-----TTTGGATAA--TTAGTGATGG---GGATTTCGGAT-TTTTG---TTAGTGGCGGGCAAGTTgttaggatgctgggagatggtacagagaaacgctagttaatttttttttgaatataagtctaaaaaccgtgtagaaaagtatgtaaaagagtgaggaactttcctattatgttgtatctactttcatcaaagtagaactagacatttcatacagaaatacactttatattacaagcagtggggttgctgatccttcatcttatagctaacggactgcaaacgtatatcgcccatttcatacataaacgtttatattgcaagccacctgatagactatgcccttaaaattgaaggccatttcccattgctacccactctgacagtataatttccaatcacgtggctgccggattcttattttcaatttgagcctgtattatacaccatacctttttcagcttaggccccaatttctcccattatactccctttcatgtatcctatatgatttttttataa
gi|6 : ccattattgagctcccggtctgtagtccaaaataaggacagggtcataaattactgtatactttgaggatgaagcattgaatcagaggcatagcataatgctCAATGCCTCA----------TC--AACAGTCAATATgttaggttgttgggatttgttctgagaaacaggagttactttgttttaaatatgaatcataaaaccgtgtatgtataagagagagaaacgcccatactatattgtatatattttcattgaagtagaactagacatttagtatagatataaacattatattacaagcagtgggatttctgagttttatgatcgcctccaaatttgtaa
gi|7 : ttacatagttccattattgagctccaggtctgtagtccaaattaaggacagagtcataaattactgtgaatttcgaggaatgggtcaATATACTGTCCCCATGCTTTTAATACAGTTGAAGCTGT--ATATACTAGTATTTAAACGGTTCTTTGCTATATTTATTGCCGCCTGGTTGGCAGAAAAACGTCATGCCTCTCGTTATGACCACATTACTGTAACATTGGGCCAATACTGATAGATAATTAACAACTATCCCAGTGCTATATAACAGTATCTTAGTTCATGCGACTTAGCCATGCTAACAAAAGATACTTTTTTAATGAAGCCTTATTTAAATGACAAAACAAGCGATCCTGTAGCAAGGTCTAACCTT-AAAGTGTAACTACAAGCTCGCAAAGTGGCAAATTGGATCGCCCACCTTCATAATTTTACTGAAGCGGACTTTTCCTGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAACGACAACCA-CTTTAGACCTCAGCTTCATTTATATCCCATCATCTACAGACAAAA-ATTGCCATTACCTTTATCGA----CCAAATTGTTCAACATATATATTATAACTAAAACCTCACAaatcaggagcactccataatgctgcgacgcttctctgtacagttatatacactgcagatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgcttgataataattaatcaaagaagacgatggcgattcggattttggttggttggttgtggtctagttgttaggttgttaaaatgggaaattgcgcaatgaaccaggagtgactttgttgaatatgaatccttaaacccgtgcagaaagacatgtaaaaacgtgagaaactttcctgttatattatatatattttcattaaagtagaacagacttttagaatagaaataaaccttatactacaaacagttggatttcagattttatcatttctcctaaatttgta
gi|8 : ATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-TAG-----TTAGTTGCGATCCAGTT
gi|9 : agaattacaaaatttcattattgtagtcaaaactaaagaaaatagtcataaatttctgtgaactttgaggataggggtcaatactggttggagatcaaacaacatactactgcgaggctcctttgtacaaatatttacacatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccagctcatggtATATAAAGGCTTGATGATAATCAATC---GTCTTTGTAGGATTAGT----TTTTA-A------------------AAGGATGGTTCGGATTTC-GAT-TAG-----TTAGTTGCGATCCAGTTgttacgttgtggggagattgttcagagaaacaggatttaatgaaacatcaaaccgtgtagaaaggtatgtaaaagaatgaggaactttcctattatgttgaatatattttcattaaagtagaatatttagtatagaaataaacattatattacaagcagtggaattttcgattcatataatttctcaaaaatttgttaaaa
blockSeqs : A G ACATATAGCGTCCA T A T G A A A C A G T CTT AA T T A A A T T G . C C A A T T T G A T A T CT A A C TATATT T A T T A . A A . T T A G A T T A A GG T CACA T GG NNNNNNNNNNNNNNN C AGG TTTTTATAGTGTTTTTAGATTA C TTC G ATGTTTGCTAG A
blockSeqs : G TA G . A . . . A A . A T . . . G . . G CA NNNNNNNNNNNNNNN T AGT TAGACTTTTAGATTTGGATAA T TTC G ATTTTTG A
blockSeqs : . TC . T CN . T AGG AGGATTAGTTTTTAA T . G ATTAG C
blockSeqs : . C GGG AGGATTAGTTTTTAA A . G ATTAG A
blockSeqs : C . TTTTTTTATATTA A . G ATCG C
blockSeqs : . . TTAAGGATTAGT A . . . C
blockSeqs : A . . .
blockSeqCons : TTAGGATTAGTTTTTAATTA**************** ATTG*******
originalCons : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTAT--------T----TTTTA-A-----TTTAGATTA--TTNGGGATGG---GGATTTCGGAT-T-------TTAGTGGCGGTCAAGTT
finalCons : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTATTTAGGATTAGTTTTTAATTA----------------TTNGGGATGG---GGATTTCGGATTG-------TTAGTGGCGGTCAAGTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCATTTTGTGAATAGCCAATGGTATTACGTACGGTTCTTGAATAAAATATTAAATAAACCAATGTCAACATACTGACTATAGCAATCATACTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTCTTCCAGAATCAATATAATTTGCTTTTCTCCTTTCTTTTTTTTCTTTCTTAATTTAGTGTGTCTTTCCTCATTTAAAAAAAAAATAAAACAAAATTATTTCATCACGTTAATATCATGATTAAAGACGTATTGAACTATTTTATTGCAATGCTGTACAAAATTGTTTCTACTGTGCCCC
Unaligned ( gi|12 ): AAAACCAACCCCTTGAGTTATTAATCCCTCACTATTAAGCAAAATTTCATTGAGTGCAAGTGTGTATCGCCCATTAAATACATAAATATTGATATTGACAAGCCATCTATGCCCTTACTATTGAAATATATTTCCCATTGTTCCCCGGGCTGTTATACTAGTGAAGCCATATATATCAGAAACTGCTCTGACAGTATAACATCCAACCATCTGGCTGCCAGTGTTATGGACATTTTGACCCC
Unaligned ( gi|16 ): TTACATAGTTCCATTATTGGGCTCCAGGTCTGTCGTCCAAAATAAGGACAGAGTCATAAATTACTGTGAACTTTGAGGATA
Alignments
lowQualScore : 44444444444444 222 222 6666666666666666666 1 11 1 333333 1 4444444444444 5555555555 1 1111 777777777777777 33333333333333333 22222 111 4444444444444
lowQualScore : 1 0 2 88888888888888 1 1 1 1 1 1 1 1 1 1 1 111 222 1 1 1 1 1 1 1 1 8888888888888888888 1 1 1 3 7 0 3 0 7 6 7 1 7 3 77 1 3 6 888888 1 1 1 1 1 5 1 1 9999999999999 1 1 1 1 1 1 1 1 1 1111111111 3 7777 1 33 333333333333333 0 1 888 1 99999999999999999 66666 1 777 2 9999999999999 1
lowQualScore : . . . .............. . . . . . . . . . . . ... ... . . . . . . . . ................... . . . . . . . . . . . . . . .. . . . ...... . . . . . . . . ............. . . . . . . . . . .......... . .... . .. ............... . . ... . ................. ..... . ... . ............. .
lowQualScore : 0 7 5 88888888888888 0 0 0 0 0 0 0 0 0 0 0 000 000 0 0 0 0 0 0 0 0 0000000000000000000 0 0 0 7 3 7 7 7 3 7 3 0 3 3 00 0 3 7 333333 0 0 0 0 0 5 0 0 0000000000000 0 0 0 0 0 0 0 0 0 7777777777 3 0000 0 22 888888888888888 6 7 666 4 66666666666666666 33333 0 555 5 4444444444444 3
consensus : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTATTTAGGA---TTA----GTTTTTA-ATTATTNGGGATGG---GGATTTCGGA---T-T------GTTAGTGGCGGTCAAGTT
Reference ( family-347 ) : AATGGACTCGGCAGGNAGCTCAGTTACTACCGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TC--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGGTGNTATAGGAATAAATAAAATTGTNACATTCCAAAGAATGCCACTGAATCAGTACAACACCTNCTTNAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATNGGAATAAAGAAAATTGTNACATTCCGAAGAGTGTCACTGAATCNGTACAACACNTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAANAATNANATAGGAATAAAGAAAATTGTTACATTCCAAAGAATGCCACTGGAACAGTACAACACCTTCTTGAACTAAGACACTCAACATATAGTGTCTGATGATCAAAAANTGATATNGGAAAAAAGAGAATTATCACNTTCCAAAGAATGTCGNGGAATCAGTACAACACNTTCTTGAACTACTGTTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTNTTAACATGTAGCCAATGGTAGCAAATGCGCGCTNTTATGATTAAAAANCAAAACAACAAAAAACAAAACNCATTNGTGANTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCGTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCGCCTGTTTGGCGGAAAAACGTCATGCCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAAACAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACNATTGCAAGCTCGCAAAGTGGCAAATTGGATCGTCCACCTTCATAATTTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAAATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTNATATCCCATCATCTACTGACAAAA-ATTGCCATTACCCATATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAANACTGTTCTTCANCAGCATAGCGCATCATCCCGCAACGCATTCTTTCNTAGCACTGCACCAATGCTACTAAAAGTGTATTGNCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTNATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGNTTGTTTTCTTGAATGGAGATAATGAAAATNAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCANTGACTGTCCAAAAGTCATTGAACATGACNGCNANTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTANGNTTAATTTCATAAATAAGATATAACAATTAGCAGCACTNATTGNCTTCAATAAATGTAATNAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGAGCATGTTCACANGTTCGGAGAANNNNNNNNNNNNNNNTGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATACATATAAAGGCTTGATGATTATCAATCAGGGTTTTTATTTAGGA---TTA----GTTTTTA-ATTATTNGGGATGG---GGATTTCGGA---T-T------GTTAGTGGCGGTCAAGTT
gi|1 : AATGGACTCGGCAGGTAATTCAGTTACTACTGACGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TT--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTGATGATCAAAAGATGATATAGGAATAAATAAAATTATCACATTCCAAAGAATGTCACTGAATCAATACAACACCTGCTTTAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATTGGAATAAAGAAAATTGTCACATTCCGAAGAGTGTCACTGAATCTGTACAACACATTCTTGAACTAAACACTCAACATATAATGTCTGATGATCAAACAATTAAATAGGAATAAAGAAAATTGTTACATTCCAAAGAATACCACTGGAACAGTACAACACCTT---GAACTA-GACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAAAAAAGAGAATTATCACTTTCCAAAGAATGTCACGGAATCAGTACAACACCTTCTTGAACTACTATTTCTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTGATCAAGTATTAACATGTAGCCAATGGTAACAAATGTGCGCTATTATGATTAAAAACCAAAACAACAAAAAACAAAACACATTAGTGATTGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCCTTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATCTTTTGCCACCTGTTTGGCGGAAAAATGTCATGTCTTTGGTTATGACCATATTACTGTAACTTGGGGCCAATACTGATGGATAATTAACAACTATCCCAGTGCTGTATAACAGTATCTTACTTCATACGACTTAGCCATGCTGAAAACAGATATCCTGTTAATGGAGCCTTATTCAAATGACAAACAAAGCGATCTTGTAGCTAGGTCTAACCTTAAAAGTACCATTGCAAGCTCGCAA-GTGGCAAATTGGATCGTCCACCTTCATAATGTTACTGAAGCGGTC-TTCCCCGTTTAATCAGTTCTAGATTACTTGATAGTATGATAGCGAAAACCG-CTTCACACCTCAGCTTCATTCATATCCCATCATCTACTGACAAAA-ATTGCCATAACCCACATCGACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAAAATTGTTCTTCACTAGCATAGCGCATCATCCCGCAACGCATTCTTTCGTAGCACTGCACCAATGCTACTAAAAGTGTATTGGCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGAGTTTAGTACACCAAACATTTGCTTATCAGGAATTGATCGTAAATCTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAATAAACTGCACCAAAATCACCAGTGCTTGTTTTCTTAAATGGAGATAATGAAAATCAAAACTTATTGCGTAGGTCTATCAATTCCGACATTGCCTCGTATAACGGACGTAAAATGCCCTACTGGACCCAATGACTGTCCAAAAGTCATTGAACATGACAGCCATTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTATGATTAATTTCATAAATAAGATATAACAATTAGCAGCACTAATTGTCTTCAATAAATGTAATTAAAAAGAAGACACGAGTTGAAATG-CTCCCA-GCTCAGGTATACT----AGAGCATGTTCACTAGTTAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTAATGAGTATCAAGCAGTGTTTTTATTT---T---TTATAGTGTTTTTAGATTATTTGGGATGG---GGATTTCGG---------------CAGTGGCAGTCAAGTT
gi|11 : TAAATT----GGAGCATGTTCACATGTCGGGAGAA---------------TGTTGGGATCACATGATGTGAAATGCTGCCATCTTAGTATATAC----AAAGGCTTGATGATTGT-AATCAGGG-TTGTATTAAGGA---TTA----GT----------TTCAGGATGG---AGGATTCGGA---TGTTTGCTAGTTAGTGGCGGT
gi|13 : cactgacacatattcacatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATATT----GAAGCATGTTCACAactgttgttaggttgttgaaagatagttcagagaaactgaagtaactttgttttgaatatgaaccatgaaagaaaaatacatgtgtatgtaaaaaagtgaagaactttcatta
gi|14 : ttacatagttcaattattgagctccagatctgtagtccaaaataaggacagagtcataaattactgtggactttgaggataggggtcaatacttgctggagatgaagcattaaatcaggagcattatataatgctgcgaggctcctttgtacaaatataaTACTACTGACGACCAGCGAAACGAGTCTACCGCCATATAATCAGCAACATAGAGCCGTAAACAAATCCAAACAATGCCTCAACATATAGCGTCCAGACACTCAACATATAGTGTCTAGACACTCAACATATAGTG
gi|15 : AATGGACTCGGCAGGAAGCTCAGTTAGTACCGACGACCTGC-AAACGAGTCCATCACCAAATAACAAACGAAATAGAGCCGTAAACAAATCCAAACAATGC
gi|2 : CGACCTGCGAAACGAGTCCACCGCCAAATAATCAGCGAAATAGAGCCGTAAACAAACCCAAACAATGCCTCA----------TA--GACACTCAACATATAGTGTCTAGACACTCAACATATAGTGTCTAATGATCAAAAGGTATTATAAGAATAAATAAAATTGTAACATTCCAAAGAATGCCACTGAATCAGTACAACACTTTCTTGAACTAGACACTCAACATATAGTGTCTGGTGATCAAAAAATGATATAGGAATAAAGAAAATTGTAACATTCCAAAGAGTGTCACTGAATCAGTACAACACCTTCTTGAACTAGACACTCAACATATAGTGTCTGATGATCAAAAAATGATATAGGAATAAAGAAAATTGTTACATTTCAAAGAATGCCACTGAAACAGTACAACACCTTCTTGAAC-AAGACACTCAACATATAATGTCTGATGATCAAAAATTGATATTGGAAAAAAGAAAATTATCACATTCCAAAGAATGTCGAGGAATCAGTATAACACATTCTTGAACTACTGTTTTTATGCATCAACATACAACTCCGTCTTGGCTTCCAATTAATCAAGTTTTAACATGTAGCCAATGGTAGCAAATGCACGCTTTTATGATTAAAAAGC-------------------CCCATTCGTGAATGTGGATCCGGATACATAATATACTGTCACCATGCTTTTAACACCATTGAAGCTGTTTATGTACTAGTAGTAACACGGTTCGTTGCTATATTTATTGCCACCTGTTTGGCTGGAAAATGTCATGCCTTTGGTTATGACCATAT------AACTAGGGGCCAATACTGATGGATAATTAACAACAATCCCAGTGCTGTATAAAATTATCTTGCTTCATACGACTTCGCCATGCTGAAAACAGATATCCTGTTAATGGAATCTTATTCAAATGACAAAACAAGCGATATT--AGCTAGGTCTAACCTTAAAAGTACTATTGCAAGCTTATAAAGTGGCAAATTTGATTGTCCACCTTCATAATTCTACTGAAGCGGTC-TTCCCCGTTTAATCAATTCTAAATTACTTGATAGTATGATAGCGAAACCCCTCTTCACACCTCAGCTTCATTAATATCCCATCATCTACTGACAAAAAATTGCCATTACCCATATCTACTTGCTAAATTGTTCAACGTA------GTAACCAGGACCTCATAAAAATGGTACCAGGGCCTCATTAAGCAATACTGTTCTTCAACAGCATAGCACATCATCCCGCAACGCATTCTTTCTTAGCACTGCACCAATGCTACTAAAAGTGTATTGTCTGACAATAATGCACTACCTAGATAGTTAGAAAGCCATCCCAAGGCATCATTTCTCTGCGGGTTTAGTACACCAAACATTTGCTAATCAGGAATTGATCGTAAATTTAACGTTTCTGTGGTGTGCCATGTTTGCTTCGGAAAAT-AACTGCACCAAAATCACCAGTGATTGTTTTCTTGAATGGAGATAATGAAAATAAAAAC-------------CTATCAATTCCGACATTGTCTCGTATAACGGACATAAAATGCTCTACTGGACCCATTGACTGTCCAAAAGTTATTGAACATAACTGCAAGTTTCAAATTCTGTACTAGTCCATAATTCATTGAATAATTAAGTTTAATTTCATAAATAAGATATAACAATTAGCAGCACTTATTGACTTCAATAAATGTAATAAAAAAGAAGACGCGA--------G-CTCCCA-GCTCAGGTATATT----GGATTATGTTCACAGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATAAAGGCTTGATGATTATCAAGCAGTGTTTTTATTT---T---TTATAGTGTTTTTAGATTATTTGGGATGG---GGATTTCGG---------------CAGTGGCAGTCAAGTt
gi|3 : TTGGGATGG---GGATTTCGG---------------CAGTGGCAGTCAAGTT
gi|4 : ATATTAAGACTTGATGATTATTAATCAGGGTTT--------GA---TT-----TTTTTTATATTATTAGGGATGG---GGATTTCGGA---T-C------GTTAGTGGCAGTCCAGTTgttaaggatgctgggaggttgtagagaaaggcgaattatttgttttgaatacgagtcataaaaccatgtagaaaagtatgtaaaacagtgaagaactttcctattatgttgtatatatttttctaaagtagaactagatatctaatatggaaataaactttattttacaagcaatgggattgctgatttttttaatttcccttcagttgctcatccttcatcttatagcaaattgactgcaagtgtgtattacccatttcatacctaaacgtttatattgtcaagtcaccttatagaccacgcccttgaaactgaaggctatttcccattgctccaaactctgacagtataatgtccaatcacctggctgccggatacctatcctcaatttgagcctgcattactcgctataccttcttcatctaggtccccatttctcattatttaatgtagtaagtaattttcttgaataaaatattaattaaaccaaggtcaacatactgactagcaatcatacccaaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaaaatatatagttataaattaaaatctgtatctttttctccaagattcagtaagtttacttttcatctttttattaatttaaataatgtgtctttcttcattttacaaaattaaaataaaattatttcatattgttaatgtcatgatgtaatgaatacattttattgtagtactgtgcaaaatgtctgtgctgtgccccttta
gi|5 : GCGA--------GGCTCCTTTGTACAGATATATACACAGAAGCATGGTCACATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAAAAAGGCTTGATGGTCATTAATCGGGTTTTTTATT--AGACTTTTA----GATTTGG-ATAATTAGTGATGG---GGATTTCGGATTTT-T------GTTAGTGGCGGGCAAGTTgttaggatgctgggagatggtacagagaaacgctagttaatttttttttgaatataagtctaaaaaccgtgtagaaaagtatgtaaaagagtgaggaactttcctattatgttgtatctactttcatcaaagtagaactagacatttcatacagaaatacactttatattacaagcagtggggttgctgatccttcatcttatagctaacggactgcaaacgtatatcgcccatttcatacataaacgtttatattgcaagccacctgatagactatgcccttaaaattgaaggccatttcccattgctacccactctgacagtataatttccaatcacgtggctgccggattcttattttcaatttgagcctgtattatacaccatacctttttcagcttaggccccaatttctcccattatactccctttcatgtatcctatatgatttttttataa
gi|6 : ccattattgagctcccggtctgtagtccaaaataaggacagggtcataaattactgtatactttgaggatgaagcattgaatcagaggcatagcataatgctCAATGCCTCA----------TC--AACAGTCAATATgttaggttgttgggatttgttctgagaaacaggagttactttgttttaaatatgaatcataaaaccgtgtatgtataagagagagaaacgcccatactatattgtatatattttcattgaagtagaactagacatttagtatagatataaacattatattacaagcagtgggatttctgagttttatgatcgcctccaaatttgtaa
gi|7 : ttacatagttccattattgagctccaggtctgtagtccaaattaaggacagagtcataaattactgtgaatttcgaggaatgggtcaATATACTGTCCCCATGCTTTTAATACAGTTGAAGCTGT--ATATACTAGTATTTAAACGGTTCTTTGCTATATTTATTGCCGCCTGGTTGGCAGAAAAACGTCATGCCTCTCGTTATGACCACATTACTGTAACATTGGGCCAATACTGATAGATAATTAACAACTATCCCAGTGCTATATAACAGTATCTTAGTTCATGCGACTTAGCCATGCTAACAAAAGATACTTTTTTAATGAAGCCTTATTTAAATGACAAAACAAGCGATCCTGTAGCAAGGTCTAACCTT-AAAGTGTAACTACAAGCTCGCAAAGTGGCAAATTGGATCGCCCACCTTCATAATTTTACTGAAGCGGACTTTTCCTGTTTAATCAGTTCTAAATTACCTGGTAGTATGATAACGACAACCA-CTTTAGACCTCAGCTTCATTTATATCCCATCATCTACAGACAAAA-ATTGCCATTACCTTTATCGA----CCAAATTGTTCAACATATATATTATAACTAAAACCTCACAaatcaggagcactccataatgctgcgacgcttctctgtacagttatatacactgcagatgttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgcttgataataattaatcaaagaagacgatggcgattcggattttggttggttggttgtggtctagttgttaggttgttaaaatgggaaattgcgcaatgaaccaggagtgactttgttgaatatgaatccttaaacccgtgcagaaagacatgtaaaaacgtgagaaactttcctgttatattatatatattttcattaaagtagaacagacttttagaatagaaataaaccttatactacaaacagttggatttcagattttatcatttctcctaaatttgta
gi|8 : ATATAAAGGCTTGATGATAATCAATC---GTCTTTG--TAGGA---TTA----GTTTTTA-A-----AAGGATGGTTCGGATTTC-GA---T-TA-----GTTAGTTGCGATCCAGTT
gi|9 : agaattacaaaatttcattattgtagtcaaaactaaagaaaatagtcataaatttctgtgaactttgaggataggggtcaatactggttggagatcaaacaacatactactgcgaggctcctttgtacaaatatttacacatgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccagctcatggtATATAAAGGCTTGATGATAATCAATC---GTCTTTG--TAGGA---TTA----GTTTTTA-A-----AAGGATGGTTCGGATTTC-GA---T-TA-----GTTAGTTGCGATCCAGTTgttacgttgtggggagattgttcagagaaacaggatttaatgaaacatcaaaccgtgtagaaaggtatgtaaaagaatgaggaactttcctattatgttgaatatattttcattaaagtagaatatttagtatagaaataaacattatattacaagcagtggaattttcgattcatataatttctcaaaaatttgttaaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCATTTTGTGAATAGCCAATGGTATTACGTACGGTTCTTGAATAAAATATTAAATAAACCAATGTCAACATACTGACTATAGCAATCATACTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTTTCTTCCAGAATCAATATAATTTGCTTTTCTCCTTTCTTTTTTTTCTTTCTTAATTTAGTGTGTCTTTCCTCATTTAAAAAAAAAATAAAACAAAATTATTTCATCACGTTAATATCATGATTAAAGACGTATTGAACTATTTTATTGCAATGCTGTACAAAATTGTTTCTACTGTGCCCC
Unaligned ( gi|12 ): AAAACCAACCCCTTGAGTTATTAATCCCTCACTATTAAGCAAAATTTCATTGAGTGCAAGTGTGTATCGCCCATTAAATACATAAATATTGATATTGACAAGCCATCTATGCCCTTACTATTGAAATATATTTCCCATTGTTCCCCGGGCTGTTATACTAGTGAAGCCATATATATCAGAAACTGCTCTGACAGTATAACATCCAACCATCTGGCTGCCAGTGTTATGGACATTTTGACCCC
Unaligned ( gi|16 ): TTACATAGTTCCATTATTGGGCTCCAGGTCTGTCGTCCAAAATAAGGACAGAGTCATAAATTACTGTGAACTTTGAGGATA