lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 8888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 2222222222 77777777777777777777777777777777777777777 1111111111111 1111111111111111 11 2222222222222222222222222222 1 11111 111 44444444444444444444444444444444444444444444444444444444444444 22222222222 222 1111 1 222222222222222222 1111111 444444444444 111111111111 111 111 3333333333333 22222 1 1111
lowQualScore : 6 777 2 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 44 2 44 333 2 8 0 9999999999 2 22 22 1 6 0 2 55555555555555555555555555555555555555555 333 6666 2 44 1 5555555555555 444 7777777777777777 5555 2 77 2 9999 22 9999 55 4444444444444444444444444444 2 3 77777 33 000 77777 44444444444444444444444444444444444444444444444444444444444444 2 333 44444 22 33 888888888 9 55555555555 444 4444 0000 33 6 2 2 2 2 444444444444444444 22 2222222 2 111111111111 99999 2 22 55 333 444444444444 33 999 000 2 3333333333333 11111 6 5 4444 33 33
lowQualScore : . ... . . ............................................................................ .. . .. ... . . . .......... . .. .. . . . . ......................................... ... .... . .. . ............. ... ................ .... . .. . .... .. .... .. ............................ . . ..... .. ... ..... .............................................................. . ... ..... .. .. ......... . ........... ... .... .... .. . . . . . .................. .. ....... . ............ ..... . .. .. ... ............ .. ... ... . ............. ..... . . .... .. ..
lowQualScore : 0 444 7 2 2222222222222222222222222222222222222222222222222222222222222222222222222222 77 0 22 999 2 0 9 6666666666 1 55 99 7 8 1 1 44444444444444444444444444444444444444444 555 2222 0 88 7 9999999999999 000 2222222222222222 3333 5 88 2 7777 66 9999 99 9999999999999999999999999999 9 1 55555 99 777 11111 77777777777777777777777777777777777777777777777777777777777777 2 777 99999 66 22 999999999 3 22222222222 444 2222 8888 11 2 2 1 6 1 444444444444444444 99 6666666 1 222222222222 33333 1 99 00 999 444444444444 22 999 666 4 9999999999999 11111 1 3 5555 77 77
consensus : ATACTCGGCAA-A-A-AAAGTTCTGCACA---------C---------T---------T---------G--------G---------G------------T----TATAAAATGAAAACTG-TATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATAA--T-C-AAAC-TTAACAA--ACAGGCGAAAACAGAA-TGAA--A-------A--------C--------T-------AG---TT---C----A-TTAGT--AATCCAT--T-AN------CA-AAGTAGACAG--------G------GGT----CAC-CGG-TCAAAAAT----GGCCAAA-A--T--AC-----------A-----GTATTTCTG--T-CAATAATGTG----TG--T--NTC-----CACCTTGGTG-T---TA--GAA----TTG---GCNA--T---A--TT-NT--A--T--A----C-------CTGTATT-TTGGCC---AT----TTTTGACC-GGTGA--CCCC---------TGTCTACAT-NTGC----ATAA-GGATTACTAAT----GAACTAGTGAA--TGGA-TTTTCATTCT-G-TT-T-CG--CCT---------GTTTG--TTA-----AGTT-TGAA--T-TTATT--TTT-T--TA-T--GATA--TATA---AA------------ACATATCCGT--ATGAAATAC-AGTTTTCATTTTATAA-CCCA----------AATA-CCCCAAGTGTGCAGAA-C-TT-T--T--TTGCCGAGTG
Reference ( gi|2 ) : ATATTCGGCAA-T-A-AAAGTTCTGCACA---------C---------T---------T---------G--------G---------G------------T----TATAAAATGAAAACTT-TATTTCTTACGGATATATTTTA---TAT-ACCATAATAAACAA-AATAA--T-C-AAAC-TTAACAA--ATAGGTGAAAACAGAA-TGAA--A-------A--------C--------T-------AC---TT---C----A-TTAGT--AATTCAC--T-AA------CA-AAGTAGACAG--------G------GGT----CAC-CAA-TCAAAAAT----GGCCTAA-G--T--AC-----------A-----TTATTTTTA--T-CAAGAATGTC----TG--T--TTC-----CACCTTGGTG-TG--CA--AAA-CACTTG---GCTA--T---A--TT-TT--A--T--A----C-------CTGTATT-TTAGCC---AT----TTTTGACC-GATGA--CCCC---------TGTGTACAT-GTGC----ATAA--GATTACTAAT----GAATTAATGAA--TAGA-TTTTCATTCT-G-TT-T-CG--CAT---------GTTTG--TTA-----AATT-TGAA-ATTTCATT--TTT-T--TA-T--GATA--TATA---AA------------ACATATCCGT--AAGCAATAC-GGTTTTCATTTTATAA-CGCT----------AATACCCCCAAGTGAGCAGAA-C-GT-T--T--TTGCCGAGTG
gi|1 : ACACTCGGCAA---A-AAAGTTCTGCACA---------C---------T---------T---------GTGATATTTG---------GTTTATAAAATGTT----TATAAAATGAAAACTA-TATAACGTACGGATATGTTTTA---TAT-ATCTTGATA---AA-AACAATTT-C-AAAC-CTAACAA--ATAGGCGAAAACAGAA-TGAA--ATCCATTCA--------C--------T-------AG---TT---C----A-TTAGT--AATCAAT--T-AT------CA-AAGTAGACAA--------G------GGC----CAC-CAG-TCAAAAAT----------A-G--T---C-----------A-----GTATTTCTT--T-CAATAACGTG----TG--T--ATC-----CACCCAGGTGTTG--TT--GAA----TTG---GCAAT-T---A--TT-GT--A--TTCA----C-------CAGTATT-TTAGCC---AT----TTTTGACC-GATGC--CCCT---------TGTACACAT-GTGC----ATAA--ACTGACTAAT----GAACTAATGAA--TGGG-TTTTCATCCT-GTTT-T-CG--CCT---------GTTTG--TTA-----AGTT-TGAA-GT---ATTG-TTTGT--TA-T--ACTA--TTTA---AA------------AC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAA-A-A-TAAGTTCTTCATA---------C---------T---------T---------G--------GAATATTTGGG------------T----TATAAAAT--AAACTG-TATTTTATACAGATATGCGTTA---TAT-ATCA----AAACAA-A--------C-AA-C-TGAACAA--ATATGCGAAATCAAAA-TTAA--A-------A--------C--------C-------CA---TT---C----A-CTGGT-----TCAT--T-AATATTATCA-AAGTAAACAT--------T------TGT----TTC-CAG-TCAAAATA----GGTAAAA-A--T--AC-----------G-----GTATTTTTG--T-CAATAATGTG----TG--T--CTC-----CACTTTG-------------AA-TTCTCA---AT----T---A--TT-GT--A--TTCA----C-------GTGTATT-GTAGCC-------------------ATGA--TCTC---------TGTTTACAT-ATAC----ACAA--GATAACTA
gi|13 : ATACTCGACAA-A-A-AGGGTTCTGCACA---------A---------T---------TTGGTATT--G--------G---------A------------T----TATAAAG-GAAAACTG-TTTTTCATACGGATATATTTTA---TAT-ATCATGATA---AA-AATAT--T-T-CAACATAAACAA--TTAGGCGAAAACAGAA-TGAA--A-------AT-------C--------C-------A----TT---C----A-CTAGTTCAATTa
gi|12 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaATACCCCACAA-C-A-GAAGCTCTGCATG---------C---------T---------TCATGTATTGG--------A---------G------------C----TATAAA-TGAAAACTTATATTACTCAAATAAACAGCTTG---TAT-ATCAT-ATAAA-AC-AATAAT-T-C-AAAC-GTAAAAA--ATCAATAAAAACAGAA-atc
gi|15 : cttATACTCGGCAG---A-AAAGTT----AAA---------C---------T---------T---------T--------GC--------A------------T----TATCAAGTGAAAACTG-TATTTCATATGGATATG-TCTA---T----CCATGCTTATCCG-ACTAA--G-C-AAAT----ACAATTGTAGGCCGATACAGAA-TAAAT-ATCCATTCA--------C--------T-------AG---TT---C----A-TGAGT--ATTCTAT--T-AT------CA-GAGaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|18 : ACACTCGGCAA-GGA-AAAGTTCTGCACA---------CATGGACCTTT---------T---------G--------G---------G------------T----TATAAAAT
gi|6 : TACTCGGCAA---A-AACGTTCTGCACA---------C---------T---------T---------G--------G---------GGTATTTGGG---T----TATAAAATGAAAACTG-TATTGCATACCGATCTGTGTAA---TATTATTATTACGAACAA-AACA---T-C-AATC-TTAACAA--ATAGGTGAAACCAGAA-TGAAC-ATCCATTCA--------C--------T-------AG---TT---C----A-TTAGT--AATCCAT--T-AT------CA-ACATAGACAT--------G------GGT----TGC-CAG-TCAAAAAT----GACCAAA-A--TTCAT-----------A-----TTACTT-----C-CAATAATGTG----TG--T--ATC-----CACCTTGGTG-T---TATTGAA----TTG---CCAAT-T---A--TT-GT--ATTT--A----C-------CTGTA-T-TTAGCC---AT----TTTTGACC-AA
gi|17 : gcataagtaaccatacgccttTACTCCGCAACT-A-A--GTTCTGCACA---------C---------T---------T---------ATTTT----G---------G------------T----TATAAAATGAAAACT
gi|19 : gtataacacacTACTCGGCAA-A-AGAAAGTTCTGCA-A---------C---------T---------T---------G--------G---------
gi|8 : cccaaatacaACTCGACAA-A-A-ACAGTTATGCACA---------C---------T---------T---------G--------G---------GGTGTT-------TGGGGTATAAAATGGAAACTG-TATTTATTACGGATATGTTTTA---TAT-ATCATAATAAACAATAATAG--G-C-GAAC------------AGA-GAAAATACAT-TCAA--A-------A------------------------------GT---T----A-TTAGT--AATCCGT--T--A------CC-AAGTAGACAA--------T------TAT----CAC-CAG-TCAGAATT----GGTCAAA-A--T--AC-----------A-----ATATTTCTG--T-CCAAAATGTG----TG--T--TTC-----CGCCTTGGTG-T---TA--A-------TG---GATT--TTCAA--TTATT--G--T--AGCCGC-------CTGTATT-TAAGTC---AT----TTTTGACC-GAAAA--CCCC---------TGTATACTT-ATGC----ATCG--GATT
gi|9 : TCGGCAA-A-A-CAAATTCTGCACAATTGGGGTAT---------T---------T---------G--------G---------G------------T----TAATAAATAAAAGCT---ATTTCTTACGGGCATGTTGTA---TAT-A-------AAA-AA-ACTGA---------C-TCA-CAA--ACAGGCGAAAACAGAA-TGAA--A-------A--------T--------C-------CC---TT---C----T-TCAGT--TAT---------A------TA----TACACGG--------G------GAT----CAT-CGA-TCAAAAAT----GGCTTAA-A--T--ACAAGTGAATACAA-----TAATTGACAATT-CAATAACATCAAGGTGGAT--TTG-----CACTTTATTG--A--CA--GAA--AT------GCTA--T---A--TT-TT--------------------------TT-T--GCC---AT----TTTT-ACA-GGTGA--CCCC---------TGTCAAC-T-TTG-----ATAATGGATTACTACT----GAAg
gi|5 : gTCGGCAA-A-A-CAAGTTCTTCCCA---------C---------TCGAGGTATTT---------G--------G---------G------------T----TATACAAAGAAAACTG-TATTTTATAAGTATTTGATTTA---TAT-ATAGTAATAAACAA-AA-AT--T-C-AAAC-CCAAGGA--A-AGAC-AAAAC--AA-TTCATTC-------A--------C--------T-------AG---TT---CATTTA-TTAAT--AATCCAT--T-AT------TA-AAGTAGACAT--------G------GTT----CAC-CA----GAAAATAAA-GGTCAAA-A--T--AC-----------A-----ATA-TTCTG--G-CAATAATATG----TA--T--ATC-----CACATTGGTG-T
gi|4 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaacttaacaaacaggcgaaaacatcaaggtttcaacaattcaataCGGCAA-A-A-ACGGTTTTGCACA---------C---------T---------T---------G--------G---------GGTATTTGGG---T----TATAAAATGAAAACTG-TATTTCATACGGGTg
gi|16 : tataacatagtaaacgatatccaaacttaacaaaaaggcgaaaagagaatgaagattgaaattcaattcattagtaatccattatcaaagtagaagtaaaaattgtattttggtgacccaccagtcaaaacttgccaaaatacaatttttctgtctataatgtgtgcgtccactttggtgttattgaaatgtcaattattacatttttgaccgataacattcatgcatgtgcataaaattacaaatgaactactgactggattttcattctgttatcgcctgtttgttaagtttgaattattgttaattatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgcCGGCAA-----AAAGTTCTGCACA---------C---------T---------TATTT-----G--------A---------G------------T----TACGAATTGGAAA--T-AATTTCATACGGATATGTTTTA---TGT-ATGATAATAAAC-A-AATAT--T-C-AAAC-TTAAAAA--ATAGGCAAAAAGA-AA-TGAA--A-------AT-------C--------C-------A----TT---C----T-CTAGT--
gi|3 : tgaCAA---A-ATAGTTCTGCACA---------C---------T---------T---------G--------G---------GGTATT-------TGGGGTATAAAATGAAAACTT-TATTTTAAACGGATATGCTTTA---CAT-ATCATAATAGAT---AATAA--T-TGAAAC-TTAACAA--ACAGGCGAAAAGAGAA-T-AA--A-------A--------T--------T-------TG---TT---C----A-TTTGT--AA---ACTTT-TA------CATATGTAAAAA------------------T----CAT-CGG-TCAAAACT----GGCTCAA-A--T--AC-----------A-----tgtg
gi|5 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatatatactgatgtgttttatacatcatagtaaacaataattcaaatattacaagtggtcgaaaatagaatgaaaatccattcacaagtttattactaattcattatcatattagagagtggactgcgatcaaaagttcgtggccaacatacagtatttctgtcaataatgtgtgtatctatcttgttgttatcaaattgtcaatttttgaattcatcTCTACACA---------C---------G---------T---------G--------G---------GGTATTTAAG---T----TATAATATGAAA-CTG-TATTCCATACAGATATGTTTTA---TAT-ATCATAAAAAACAATGAT----T-C-AAAC-TTAACAA--ACAGGCGAAAAC---A-TCAA--G-------G--------T--------T------------------------TCAAC--AATTCAA--T-AA------CA-
gi|7 : A---------T---------T---------T---------G--------G---------G------------A----TATAAAATA--------TATTTCATACGAATATGATTTA---TAT-ATCATAA---------A-GA--T-C-AAAC-TTA-------TAGGAGAAAACA-AA-TGAA--A-------A--------A--------TCCATTC-AC---TTGTTC----A-TTAGT--AATTTAT--T-AA------CA-AAGTAGGCAG--------G------AGA----GAC-CAG-TTAAAAGT----GGGCAAA-A--T--AC-----------A-----GT-CTTTTG--T-CAAAAGTGTG----TG--T--ATC-----CACCATGGTG-T---TA---------TTGAATGTCAGTT---A--TT-GT--A--TTAA----C-------CTGTATT-TTAGCC---AT----TTTAGACA-GATGA--CTAC---------TGTATACAT-GTTC----ATCA--AATTACTAAT----Gccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|14 : A---------T---------T---------T---------G--------G---------G------------T----TATAAAATGAAAAATG-TATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAATAAT----T-C-ACAC-TTAACAA--ACAGGCGAAAAGAGAATTGAA--A-------T--------C--------C-------A-----T---CA---A-TTAGT--acctcaagcgttcataatattttgtgtagtgt
gi|11 : cttggtgtatttggggttctatgaTGAAAACTG-TACTTCATATGGATATGTTTTAAATTAT-ATAATAATAAATAA-AA-----------A--TTAACAA--ACAGTCGGAAACAGAA-TGAA--A-------ATCCATTCAC--------T-------AG---TC---C----A-TTAGT--TATCCGT--T-AT------CA-AAGTAGACAG--------G------GGT----CAC-CAGGCCAAAAAT----GGCCAAA-A--T--AC-----------A-----T-GTTTCTG--T-CAATAACGGG----TG--T--ATC-----CACCTTGGTG-T---TATTGAA-TTGTTA---ATTA--T---A--GT-AT--T--C--A----C-------CTGTATT-TTACTC---AA----TTTTaccctcaagtcatatgctttttttgcaggttctgttgaaga
gi|3 : TACTGATGTGTTTTA---TAC-ATCATAGTAAACAA---TAA--TTC-AAAT-ATTACAA--GTGGTCGAAAATAGAA-TGAA--A-------A--------T--------CCATTC--ACAAGTT---T----A-TTACT--AATTCAT--T-AT------CA-TATTAGAGAG--------T------GGA----CTG-CGA-TCAAAAGTTCGTGGCCAAC-A--T--AC-----------A-----GTATTTCTG--T-CAATAATGTG----TG--T--ATC-----TATCTTGTTG-TTATCA--AA-----TTG---TCAA--T------TT-TTGAA--TTCA----T-------CTGTATT-TGAGCC---AG----TTTTGACC-GATGA---------------TTTTTACAT-ATGT----AAAA--GTTTAC----------A--AATGAA--CAAA-TTTT-ATTCT-C-TT-TTCG--CCT---------GTTTG--TTA-----AGTT-TCAA-TTATTATC--TAT-T---A-T--GATA--TGTA---AA------------GCATATCCGTTTAA--AATAA-AGTTTTCATTTTATAC-CCCA----------AATA-CCCCAAGTGTGCAGAA-C-TA-T--T--TTG
gi|1 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatataTTTTA---AAT-AGTATAACAAACAA---TAC--TTC-AAAC-TTAACAA--ACAGGCGAAAACAGGA-TGAA--A-------A--------CCCATTCATT-------AG---TT---C----A-TTAGTC-AGTTTAT--G-CA------CA-T-GTGTACAA--------G------GGG----CAT-CGG-TCAAAAAT----GGCTAAA-A--T--AC-----------
gi|4 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng---TAT-AACATAGTAAACGA-TAT----C-C-AAAC-TTAACAA--AAAGGCGAAAAGAGAA-TGAA--G-------A--------T--------TGAAATTCAA---TT---C----A-TTAGT--AATCCAT--T-AT------CA-AAGTAGA-AGTAAAAATTGTATTTTGGTGACCCAC-CAG-TCAAAACT----TGCCAAA-A--T--AC-----------A-----ATTTTTCTG--T-CTATAATGTG----TG--C--GTC-----CACTTTGGTG-T-----------TA-TTG------A--A---A--TG-TC--A----------------------ATTATTA--C---AT----TTTTGACC-GATAA--CATT---------CATG--CAT-GTGC----ATAA--AATTACAAAT----GAACTACTGAC--TGGA-TTTTCATTCT-G-TTAT-CG--CCTGTTTGTTAAGTTTGAATTATTGTTAATTATGNN-NNNNNNNN--NNN-N--NN-N--NNNN--NNNN---NNNNNNNNNNNNNNACGCACCCGT--ATGAAATAC-AGTTTTCATTTTATAA-CCCA----------AATA-CCCCAAGTGTGCAAAACC-GT-T--T--TTGCCGtggtgaatacaataattgccaattcaacaacacctgggtggatacacacgttattgaaagaaatactgactatttttgactggtggcccttgtctactttgataattgattactaatgaactagtgaatggatttcattctgttttcgcctatttgttaggtttgaaattgtttttatcaagatatataaaacatatccgtacgttatatagttttcattttataaacattttataaaccaaatatcacaagtgtgcagaacttttttgccgagtgt
gi|4 : CATAATTAACAA---TAA--TTC-AAAC-TTAACAA--ACAGGCGATAACAGAA-TGAA--A-------A------------------------------TC---C----AGTCAGT--AGTTCAT--T-
gi|9 : tataacatagtaaacgatatccaaacttaacaaaaaggcgaaaagagaatgaagattgaaattcaattcattagtaatccattatcaaagtagaagtaaaaattgtattttggtgacccaccagtcaaaacttgccaaaatacaatttttctgtctataatgtgtgcgtccactttggtgttattgaaatgtcaattattacatttttgaccgataacattcatgcatgtgcataaaattaca---TT---C----A-GTAGT--AATCCAT--T-AT------CA-AAGTTGACAG--------G------GGT----CAC-CTG-T-AAAAAT----GGCAAAA-AAAT--AT-----------A-----GCATTTCTG--T-CAATAAAGTG----CA--A--ATC-----CACCTTGATG-T---TATTGAA----TTG---TCAA--TT--A--TT-GT--A--TTCA----C-------TTGTATT-TAAGCC---AT----TTTTGATC-GATGA--TCCC---------CGTGTATAT---------ATAA-------CT-------GAA-----GAA--GGGA-TTTTCATTCT-GTTT-T-CG--CCT---------GTTTG---------------TGAG----TCAGT--TTT-T--T-------TA--TATA---CA------------ACATGCCCGT--AAGAAATA---GCTTTTATTTATTAA-CCCA----------AATA-CCCCAATTGTGCAGAA-T-TTGT--T--TTGCCGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgcacccgtatgaaatacagttttcattttataacccaaataccccaagtgtgcaaaaccgtttttgccg
gi|7 : g---C----A-TTAGT--AATTTGA--TGAA------CA-T-GTATACAG--------T------AGT----CAT-CTG-TCTAAAAT----GGCTAAA-A--T--AC-----------AGG---TTA-----A--TACAATAA---C----TG--ACATTCAATAACACCATGGTG------G--ATA-CAC---------A--C---A--CT-TT--T--G--A----CAAAAGA-CTGTATT-TTGCCC---AC----TTTTAACT-GGTCT--CTCC---------TGCCTACTTTGTTA----ATAA---ATTACTAAT----GAACAAGTGAA--TGGATTTTTCATT-T-GTTT-T-CT--CCT---------A-------TA-----AGTT-TGA------------TCT-T--TA-T--GATA--TATA---AA------------TCATATTCGT--ATGAAATA--------TATTTTATAT-CCCA----------AATA-CCTCAAGCGTTCATAA-T-AT-T--T--
gi|8 : -AAGTATACAG--------G------GGT----TTT-CGG-TCAAAAAT----GACTTAA-A--T--AC-----------AGGCGGCTACAATAA--T-TGAAAAT--C----CA--T--TAA-----CACCAAGGCG------G--AAA-CAC---------A--C---A--TT-TT--G--G--A----CAGAAATATTGTATT-TTGACC---AA----TTCTGACT-GGTGA--TAAT---------TGTCTACTT-G-------GTAACGGATTACTAAT----AACTTT-TGAA--TGTA-TTTTC--TCT-G-TT---CG--C-------------CTA--TTA--------T-TG----------T--TTA-T--TA-T--GATA--TATA---AA------------ACATATCCGT--AATAAATAC-AGTTTCCATTTTATAC-CCCA----------AACA-CCCCAAGTGTGCATAA-CTGT-T--T--TTGTCGAGTGgtgtagtgt
gi|12 : aatccgatgcat----CACACAA-ACAAAA-T----GG--TAATG--TC-AA-----------A-----GAATTTCAG--T-CAGTAATAT-----TG--T--TTT-----TAGTTTGATG-AG--CA--AAAACACTTT---GCTA--T---ACGTT-TT--
gi|3 : cttataccccacaacagaagctctgcatgcttcatgtattggagctataaatgaaaacttatattactcaaataaacagcttgtatatcatataaaacaataattcaaacgtaaaaaatcaataaaaacagaaaataggcc--A--T--A----C--------TGTATG-TTGGCC---ACGAACTTTTGATC-GCAGT--CCAC---------TCTCTA-AT-ATG-----ATAATGAATTAGTAAT----AAACTTGTGAA--TGGA-TTTTCATTCT-ATTT-T-CGACCA-----------CTTG--TAA-----TATT-TGAA----TTATT--GTT-TACTA-T--GATG--TATA---AA------------ACACATCAGT--Act
gi|10 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatata--A--T--A----C-------C-GTATT-TTTACC---TA----TTTTGACT-GGAAA--CAAA---------TGTTTAC-T-TTG-----ATAA-----TATTAAT----GAACCAGTGAA--TGGG-TTTTAATTTT-GATT-T-CG--CAT---------ATTTG--TTC-----AGTT-----------GTT--TGT-T--T--T--GATA--TATA---AC------------GCATATCTGT--ATAAAATAC-AGTTT--ATTTTATAA-CCCA----------AATA-TTCCAAGTATGAAGAA-C-TTAT--T--TTACCGAGTGttctgtcaataatgtgtgtatctatcttgttgttatcaaattgtcaatttttgaattcatctgtatttgagccagttttgaccgatgatttttacatatgtaaaagtttacaaatgaacaaattttattctcttttcgcctgtttgttaagtttcaattattatctattatgatatgtaaagcatatccgtttaaaataaagttttcattttataccccaaataccccaagtgtgcagaactattttg
gi|11 : tagttatcttgtgtatatgtaaacagagatcatggctacaatacacgtgaatacaataattgagaattcaaagtggagacacacattattgacaaaa--A----C-------ATGTATT-TTGGCC---AT----TTTTGGCCTGGTGA--CCCC---------TGTCTAC-T-TTG-----ATAACGGATAACTAAT----GGACTAGTGAA--TGGA-TTTTCATTCT-G-TT-TCCG--ACT---------GTTTG--TTA-----ATTT-TTA----TTTATT--ATT-A--TA-T--AAT---T-TA---AA------------ACATATCCAT--ATGAAGTAC-AGTTTTCAta
gi|6 : aaaattgagtaaaatacaggtgaatactataattaacaattcaataacaccaaggtggatacacccgttattgacagaaTGAATT-TTGGTC---AT----TTTTGACT-GGCAA--CCCA---------TGTCTA--T-GTTG----ATAATGGATTACTAAT----GAACTAGTGAA--TGGA-TGTTCATTCT-GGTT-T-CA--CCT---------ATTTG--TTA-----AGAT-TGAT-GTTTTGTT--CGT-A---A-T--AATAA-TATT---AC------------ACAGATCGGT--ATGCAATAC-AGTTTTCATTTTATAA-CCCA----------AATACCCC-AAGTGTGCAGAA-C-GT-T--T--TTGCCGAGT
gi|4 : gcataagtaaccatacgccttttggtcaaaaatggctaaatacaggtaaatacaataattggcaattcaataacaccaaggtggatacacacattattggaagtaataTGTATT-TTGGCA---AG----TTTTGACT-GGTGGGTCACCAAAATACAATTTTTACTT-CTACTTTGATAATGGATTACTAAT----GAAT---TGAATTTCAA-TCTTCATTCTCT-TT-T-CG--CCT---------TTTTG--TTA-----AGTT-TG-G-ATATCG-T--TTA-C--TA-T--GTTA--TAa
gi|5 : TGTATT-TTGACCTTTAT----TTT---CT-GGTGA--ACCA---------TGTCTAC-T-TTA-----ATAATGGATTATTAATAAATGAACTAGTGAA--TGAA-TT---GTTTT-G-TC-T------------------TTCC--TTG-----GGTT-TGAA-TTTTTGTT--TAT-T---A-C--TATA--TATA---AATC----------AAATACTTAT--AA--AATAC-AGTTTTCTTTGTATAA-CCCA----------AATACCTC-GAGTGGGAAGAA-C-TTGT--T--TTGCCGAGatttttctgtctataatgtgtgcgtccactttggtgttattgaaatgtcaattattacatttttgaccgataacattcatgcatgtgcataaaattacaaatgaactactgactggattttcattctgttatcgcctgtttgttaagtttgaattattgttaattatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgcacccgtatgaaatacagttttcattttataacccaaataccccaagtgtgcaaaaccgtttttgccg
gi|1 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaacttaacaaacaggcgaaaacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatatCT---AT----TTTTGACT-GGTGG--CCCT---------TGTCTAC-T-TTG-----ATAATTGATTACTAAT----GAACTAGTGAA--TGGA-TTT-CATTCT-G-TT-TTCG--CCT---------ATTTG--TTA-----GGTT-TGAA-ATT--GTT--TTTAT--CA-A--GATA--TATA---AA------------ACATATCCGT--ACGTTATAT-AGTTTTCATTTTATAAACATTTTATAAACCAAATATCAC-AAGTGTGCAGAA-C-TT-T--T--TTGCCGAGTG
gi|5 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttaaatagtataacaaacaatacttcaaacttaacaaacaggcgaaaacaggatgaaaacccattcattagttcattagtcagtttatgcacatgtgtacaaggggcatcggtcaaaaatggctaaaatactggtgaatacaataattgccaattcaacaacacctgggtggatacacacgttattgaaagaaatactga---------TATGTATAT-CCAC----ATTG--G--TGTTATT----GAATTGTTGAA-----A-CCTTGAT----G-TT-TTCG--CCT---------GTTTG--TTA-----AGTT-TGAA----TCATTGTTTT-T--TA-T--GATA--TATA---AA------------ACATATCTGT--ATGGAATAC-AG-TTTCATATTATAA-CTTA----------AATA-CCCCACGTGTGTAGAt
gi|15 : A--GAATACTCAT----GAACTAGTGAA--TGGA-TATTTATTCT-G-TA-T-CG--------------GCCTA--C---------------A-ATTGTATT--TGC-T--TAGTCGGATAAGCATGGATAG------------ACATATCCAT--ATGAAATAC-AGTTTTCACTTGATAA-TGC-----------AA------------AGTTTAA-C-TT-T--T--CTGCCGAGTttattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|14 : ctctgataatAT----GAACTAATTGA--TGGA-TTTCAATTCT-C-TT-TTCG--CCT---------GTTTG--TTA-----AGTG-TGAA----TTATTG-TTTAT--TA-T--GATA--TATA---AA------------ACATATCCGT--ATGAAATAC-ATTTTTCATTTTATAA-CCCA----------AATACCCTCAAGTat
gi|13 : cttggtgtatttggggttctT----GAACTAGTGAA--TGGA-TTTTCATTCT-G-TT-TTCG--CCT---------AATTG--TTT-----ATGT-TGAA-AT---ATT--TTTAT--CA-T--GATA--TATA---AA------------ATATATCCGT--ATGAAAAAC-AGTTTTC-CTTTATAA-T-CC----------AATA--CCAAATTGTGCAGAACC-CT-T--T--TTGTCGAGTcatatgctttttttgcaggttctgttgaaga
gi|16 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaatT----GAACTAGAGAA--TGGA-TTTTCATTTC-T-TT-T-TG--CCT---------ATTTT--TTA-----AGTT-TGAATATTT--GT--TTA-T--TA-T--CATA--CATA---AA------------ACATATCCGT--ATGAAAT---TATTTCCAATTCGTAA-CTCA----------AAT------AAGTGTGCAGAA-C--T-T--T--TTGCCGTGTGatatc
gi|12 : TTCT-G-TT-T-T---TATTG-------ATTTT--TTA-----CGTT-TGAA----TTATTG-TTT-TA-TA-T--GATA--TACA---AG------------CTGTTTATTT--GAGTAATATAAGTTTTCA-TTTATAG-CTCC----------AATAC
gi|17 : cttataccccacaacagaagctctgcatgcttcatACAC-AGTTTTCATTTTATAA-CCAA----------AAT------AAGTGTGCAGAA-C-TT-A--G--TTGCGGAGTaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|18 : gtataacATTTTATAA-C-CC----------AAAAGGTCCATGTGTGCAGAA-C-TT-T--TCCTTGCCGAGTGa
gi|19 : a----------AATACACC-AAGTT-GCAGAA-C-TT-TCTT--TTGCCGAGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000 55555555555555555555555555555555555555555 7777777777777777777777777777777777777777 1111111111111111 1111 4444444444444444444444444444444444444444444 2222222222222222 11 22 1 22222222222222222 1111111
lowQualScore : 555 33333333333333333333333333333333333333333333333 66 666 3 99999999999999999999999999999999999999999 5 0 8888888888888888888888888888888888888888 7777 88888 44 9999999999999999 7777 66 2222 44 3 44 6 2 3 4444444444444444444444444444444444444444444 55 2 5 9999 8888888888888888 1 11 4 4 55 3 1 666 55 999 3 0 3 3 77777777777777777 3 3 44 55 777 55 0 4 0 1111111 555 3 88 88
lowQualScore : ... ............................................... .. ... . ......................................... . . ........................................ .... ..... .. ................ .... .. .... .. . .. . . . ........................................... .. . . .... ................ . .. . . .. . . ... .. ... . . . . ................. . . .. .. ... .. . . . ....... ... . .. ..
lowQualScore : 666 99999999999999999999999999999999999999999999999 99 444 6 00000000000000000000000000000000000000000 5 5 1111111111111111111111111111111111111111 1111 33333 33 5555555555555555 1111 11 9999 66 3 66 5 2 3 7777777777777777777777777777777777777777777 55 2 2 4444 1111111111111111 1 99 9 1 22 6 1 222 55 444 3 0 3 3 22222222222222222 3 3 66 00 000 55 8 0 5 3333333 888 6 66 66
consensus : ACACTCGGCAAAAAAAGTTCTGCACACT---------TG--------G---------G-T--T-------T----TAT--AAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-A------------------ATAA--TCAA-----------ACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------C--------T-------AGTTC----ATTAGT-----AATCCATTA-TCAAAGTAGACAG--------G------GGT----CACC-AGTCAAAAAT----GGC--CAA-AAT--ACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTC---AAT-TATTGT--A--TTCAC-------CTGTATTTTAGCCATTTTTGACCGATG----ACC------C--------CTGTN-TACATGTGCATAA--GATT-ACTAATGAACTAGTGAA--TGGATTTTCATTCT-G-TT-T-CG-CCTG-TTTGTTAAGTTTGAA--T-T-TATTG-TTT--T-TA-T--GATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CTT--TT--TTGCCGAGTG
Reference ( family-3414 ) : ATACTCGGCAAAAAAAGTTCTGCACACT---------TG--------G---------G------------T----TAT--AAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-A------------------ATAA--TCAA-----------ACTTAACAAACAGGCGAAAACAGAATGAA-----A-------A---------C--------T-------AGTTC----ATTAGT-----AATCCATTA-NCAAAGTAGACAG--------G------GGT----CACC-GGTCAAAAAT----GGC--CAA-AAT--ACAGTATTTCTGTCAATAATGTGTGTNTCCACCTTGGTGT-TA--GAA---TTGGC---NA--TATTNT--A--T--AC-------CTGTATTTTGGCCATTTTTGACCGGTG----ACC------C--------CTGTC-TACATNTGCATAA-GGATT-ACTAATGAACTAGTGAA--TGGATTTTCATTCT-G-TT-T-CG-CCTG-TTTGTTAAGTTTGAA--T-T-TATT--TTT--T-TA-T--GATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CTT--TT--TTGCCGAGTG
gi|1 : ACACTCGGCAAAA-AAGTTCTGCACACT---------TGTGATATTTG---------GTTTATAAAATGTT----TAT--AAAATGAAAACTATATAACGTACGGATATGTTTTA---TAT-ATCTTGATA---AA-A------------------ACAATTTCAA-----------ACCTAACAAATAGGCGAAAACAGAATGAA-----ATCCATTCA---------C--------T-------AGTTC----ATTAGT-----AATCAATTA-TCAAAGTAGACAA--------G------GGC----CACC-AGTCAAAAAT----AGT------------CAGTATTTCTTTCAATAACGTGTGTATCCACCCAGGTGT-TGTTGAA---TTGGC---AAT-TATTGT--A--TTCAC-------CAGTATTTTAGCCATTTTTGACCGATG----CCC------C--------TTGTA-CACATGTGCATAA---ACTGACTAATGAACTAATGAA--TGGGTTTTCATCCT-GTTT-T-CG-CCTG-TTTGTTAAGTTTGAA----G-TATTG-TTTG-T-TA-T--ACTA--TTTAAA---AC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAAAATAAGTTCTTCATACT---------TG--------GAATATTTGGG------------T----TAT--AAAAT--AAACTGTATTTTATACAGATATGCGTTA---TAT-ATCA----AAACAA-A-------------------------CAA------------CTGAACAAATATGCGAAATCAAAATTAA-----A-------A---------C--------C-------CATTC----ACTGGTTCATTAAT--ATTA-TCAAAGTAAACAT--------T------TGT----TTCC-AGTCAAAATA----GGT--AAA-AAT--ACGGTATTTTTGTCAATAATGTGTGTCTCCACTTT----------GAA---TTCTC---AAT-TATTGT--A--TTCAC-------GTGTATTGTAGCCA-----------TG----ATC------T--------CTGTT-TACATATACACAA--GATA-ACTA
gi|11 : TGAAAACTGTACTTCATATGGATATGTTTTAAATTAT-ATAATAATAAATAA-A------------------A--------------------A-TTAACAAACAGTCGGAAACAGAATGAA-----A-------ATCCATTCA-C--------T-------AGTCC----ATTAGT-----TATCCGTTA-TCAAAGTAGACAG--------G------GGT----CACCAGGCCAAAAAT----GGC--CAA-AAT--ACA-TGTTTCTGTCAATAACGGGTGTATCCACCTTGGTGT-TATTGAA---TTGTT---AAT-TATAGT--A--TTCAC-------CTGTATTTTACTCAATTTTa
gi|12 : TTCT-G-TT-T-TT-ATTGATTTTTTACGTTTGAA--T-T--ATTG-TTT--TATA-T--GATA--TAC-AA---GC-TGTTTATTTGAGTAATATAAGTTTTCA-TTTATAGCTCCAATA-CAT-GAAG---CATGCAGAG-CTT--CTG-TTGTGGGGT
gi|13 : cttatTGAACTAGTGAA--TGGATTTTCATTCT-G-TT-TTCG-CCTA-ATTGTTTATGTTGAA--A-T--ATT--TTTA-T-CA-T--GATA--TATAAA---ATATATCCGTATGA--AAAAC-AGTTTTC-CTTTATAATCC-AATA--CC-AAAT---TGTGCAGAACCCT--TT--TTGTCGAGTaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|14 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaat-GGGTT--CTA-TGAACTAATTGA--TGGATTTCAATTCT-C-TT-TTCG-CCTG-TTTGTTAAGTGTGAA--T-T--ATTG-TTTA-T-TA-T--GATA--TATAAA---ACATATCCGTATGA--AATAC-ATTTTTCATTTTATAACCCAAATA-CCCTCAAGTCATATGC-----TTT--TT--TTGCatatc
gi|15 : cttggtgtatttgTCTG-ATAATAGAAT-ACTCATGAACTAGTGAA--TGGATATTTATTCT-G-TA-T-CGGCCTA-C------------AA--T-TGTATT--TGC--T-TAGTCGGATAAGCATGGATAGACATATCCATATGA--AATAC-AGTTTTCACTTGATAATGCAAA----------G---TTT----AA-CTT--TT--CTGCCGAGTaggttctgttgaaga
gi|16 : cTGAACTAGAGAA--TGGATTTTCATTTC-T-TT-T-TG-CCTA-TTTTTTAAGTTTGAA--TAT-TTGT--TTA--T-TA-T--CATA--CATAAA---ACATATCCGTATGA--AAT-T-A-TTTCCAATTCGTAACTCAAAT-------AAG---TGTGCAGAA-C-T--TT--TTGCCGTGTGat
gi|17 : GTATAA--CACAC-AGTTTTCATTTTATAACCAAAAT-------AAG---TGTGCAGAA-CTT--AG--TTGCGGAGT
gi|18 : ATTTTATAACCCAAAAG-GTC-CATG---TGTGCAGAA-CTT--TTCCTTGCCGAGTGa
gi|19 : aCCCAAATA-CAC-CAAG---T-TGCAGAA-CTTTCTT--TTGCCGAGT
gi|2 : ATATTCGGCAATAAAAGTTCTGCACACT---------TG--------G---------G------------T----TAT--AAAATGAAAACTTTATTTCTTACGGATATATTTTA---TAT-ACCATAATAAACAA-A------------------ATAA--TCAA-----------ACTTAACAAATAGGTGAAAACAGAATGAA-----A-------A---------C--------T-------ACTTC----ATTAGT-----AATTCACTA-ACAAAGTAGACAG--------G------GGT----CACC-AATCAAAAAT----GGC--CTA-AGT--ACATTATTTTTATCAAGAATGTCTGTTTCCACCTTGGTGTGCA--AAACACTTGGC---TA--TATTTT--A--T--AC-------CTGTATTTTAGCCATTTTTGACCGATG----ACC------C--------CTGTG-TACATGTGCATAA--GATT-ACTAATGAATTAATGAA--TAGATTTTCATTCT-G-TT-T-CG-CATG-TTTGTTAAATTTGAAATT-T-CATT--TTT--T-TA-T--GATA--TATAAA---ACATATCCGTAAGC--AATAC-GGTTTTCATTTTATAACGCTAATACCCC-CAAG---TGAGCAGAA-CGT--TT--TTGCCGAGTGa
gi|3 : ATACTGATGTGTTTTA---TAC-ATCATAGTAAACAATA------------------AT----TCAA-----------ATATTACAAGTGGTCGAAAATAGAATGAA-----A-------ATCCATTCA-C--------A-------AGTTT----ATTACT-----AATTCATTA-TCATATTAGAGAG--------T------GGA----CTGC-GATCAAAAGTTCGTGGC--CAA-CAT--ACAGTATTTCTGTCAATAATGTGTGTATCTATCTTGTTGT-TATCAAA---TTGTC---AA--T-TTTTGAA--TTCAT-------CTGTATTTGAGCCAGTTTTGACCGATG----A------------------TTTT-TACATATGTA-AA-AGTTT-ACAAATGAAC-----AA-----ATTTT-ATTCT-C-TT-TTCG-CCTG-TTTGTTAAGTTTCAA--T-T--ATTA-TCTA-T-TA-T--GATA--TGTAAA---GCATATCCGTTTAA--AATAA-AGTTTTCATTTTATACCCCAAATA-CCC-CAAG---TGTGCAGAA-CTA--TT--TTG
gi|4 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatat---TAT-AACATAGTAAACGA-T------------------AT----CCAA-----------ACTTAACAAAAAGGCGAAAAGAGAATGAA-----G-------A---------T--------TGAAATTCAATTC----ATTAGT-----AATCCATTA-TCAAAGTAGA-AGTAAAAATTGTATTTTGGTGACCCACC-AGTCAAAACT----TGC--CAA-AAT--ACAATTTTTCTGTCTATAATGTGTGCGTCCACTTTGGTGT-TATTGAA---ATGTC---AA--T----T--A--T--------------TA-------CATTTTTGACCGATA----ACA------T-----------TCATGCATGTGCATAA--AATT-ACAAATGAACTACTGAC--TGGATTTTCATTCT-G-TTAT-CG-CCTG-TTTGTTAAGTTTGAA----T-TATT--GTTAAT-TA-T--G
gi|4 : CGGCAAAAACGGTTTTGCACACT---------TG--------GGGTATTTGGG------------T----TAT--AAAATGAAAACTGTATTTCATACGGGTGCGTNNNN---NNN-NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNCATAA--TTAACAATAATTCAAACTTAACAAACAGGCGATAACAGAATGAA-----A-------A---------TCCAGTCAGT-------AGTTC----ATTTGT-----AATT--TTATGCACA-TGCATGA--------A------TGT----TATC-GGTCAAAAAT----G----TAATAATTGAC---ATT----TCAATAA----------CACC---------A--AAG---TGGACGCACA--CATTAT--A--G--ACAGAAAAATTGTATTTTGGCAAGTTTTGACTGGTGGGTCACCAAAATACAATTTTTACT-TC-TAC-TTTG-ATAATGGATT-ACTAATGAAT---TGAATTTCAATCTTCATTCTCT-TT-T-CG-CCTT-TTTGTTAAGTTTGGA--T-A-TCGT--TTA--C-TA-T--GTTA--TAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgcacccgtatgaaatacagttttcattttataacccaaataccccaagtgtgcaaaaccgtttttgccg
gi|5 : -TT-T-CG-CCTG-TTTGTTAAGTTTGAA--T-C--ATTGTTTT--T-TA-T--GATA--TATAAA---ACATATCTGTATGG--AATAC-AG-TTTCATATTATAACTTAAATA-CCC-CACG---TGTGTAGA
gi|5 : CTCGGCAAAACAAGTTCTTCCCACTCGAGGTATTTG--------G---------G------------T----TAT--ACAAAGAAAACTGTATTTTATAAGTATTTGATTTA---TAT-ATAGTAATAAACAA-A------------------A-AT--TCAA-----------ACCCAAGGAA-AGAC-AAAAC--AATTCATT---C-------A---------C--------T-------AGTTCATTTATTAAT-----AATCCATTA-TTAAAGTAGACAT--------G------GTT----CACC-AG---AAAATAAA-GGT--CAA-AAT--ACAATA-TTCTGGCAATAATATGTATATCCACATTGGTGT-TATTGAA---TTGacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|6 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaacttaacaaacaggcgaaaacatcaaggtttcaaTACTCGGCAAAAAC-GTTCTGCACACT---------TG--------G---------GGTATTTGGG---T----TAT--AAAATGAAAACTGTATTGCATACCGATCTGTGTAA---TATTATTATTACGAACAA-A------------------ACA---TCAA-----------TCTTAACAAATAGGTGAAACCAGAATGAACATCCATTC----A---------C--------T-------AGTTC----ATTAGT-----AATCCATTA-TCAACATAGACAT--------G------GGT----TGCC-AGTCAAAAAT----GAC--CAA-AAT--TCA-TATTACTTCCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGCC---AAT-TATTGT--ATTT--AC-------CTGTA-TTTAGCCATTTTTGACC
gi|7 : gcataagtaaccatacgccttttCACAAAATATTATGAACGCT---------TG--------A---------G------------G----TATTTGGGATATAAAATATATTTCATACGAATATGATTTA---TAT-ATCATAA---------------------------A-GA--TCAA-----------ACTTA-----TAGGAGAAAACA-AATGAA-----A-------AATCCATTCAC--------T-------TGTTC----ATTAGT-----AATTTATTA-ACAAAGTAGGCAG--------G------AGA----GACC-AGTTAAAAGT----GGG--CAA-AAT--ACAGTCTTT-TGTCAAAAGTGTGTGTATCCACCATGGTGT-TATTGAA---T--GT---CAGTTATTGT--A--TTAAC-------CTGTATTTTAGCCATTTTAGACAGATG----ACT------A--------CTGTA-TACATGTTCATCA--AATT-ACTAATG
gi|8 : ACTCGACAAAAACAGTTATGCACACT---------TG--------G---------GGTGTT-------TGGGGTAT--AAAATGGAAACTGTATTTATTACGGATATGTTTTA---TAT-ATCATAATAAACAATA------------------ATAG----------------------GCGAACAGA-GAAAATACATTCAA-----A-------A---------------------------GTT-----ATTAGT-----AATCCGTTA-CCAA-GTAGACAA--------T------TAT----CACC-AGTCAGAATT----GGT--CAA-AAT--ACAATATTTCTGTCCAAAATGTGTGTTTCCGCCTTGGTGT-TAATGGA---TTTTC---AAT-TATTGT--AGCC--GC-------CTGTATTTAAGTCATTTTTGACCGAAA----ACC------C--------CTGTA-TACTTATGCAT-C-GGATT-tagtgt
gi|9 : GTTC----AGTAGT-----AATCCATTA-TCAAAGTTGACAG--------G------GGT----CACC-TGT-AAAAAT----GGCAAAAA-AAT--ATAGCATTTCTGTCAATAAAGTGCAAATCCACCTTGATGT-TATTGAA---TTGTC---AAT-TATTGT--A--TTCAC-------TTGTATTTAAGCCATTTTTGATCGATG----ATC------C--------CCGTG-TATAT----ATA--------AC---TGAA-----GAA--GGGATTTTCATTCT-GTTT-T-CG-CCTG-TTTG-------TGAG--T-C-AGTT--TTT--T---------TA--TATACA---ACATGCCCGTAAGA--AAT---AGCTTTTATTTATTAACCCAAATA-CCC-CAAT---TGTGCAGAA-TTTG-TT--TTGCCGAg
Alignments
lowQualScore : 999999999999999999999999999999999999999999999 33333 77777777777777777777777777777777 222222222222222 1111 1 2222222222222 222 1 2222222222222
lowQualScore : 5 1 333333333333333333333333333333333333333333333 777 4 8 33333 1 2 0 4 33333333333333333333333333333333 7777 99999 000000000000000 7777 3 0 4444 55 5 3 666 7777 0 0 4 1 2 0 0 3 0 7 3 0 3 7777 3 55 0000000000000 555 44 55 4 3 55 6666666666666 55 3 777777 555 3 3 77 77
lowQualScore : . . ............................................. ... . . ..... . . . . ................................ .... ..... ............... .... . . .... .. . . ... .... . . . . . . . . . . . . . .... . .. ............. ... .. .. . . .. ............. .. . ...... ... . . .. ..
lowQualScore : 1 7 444444444444444444444444444444444444444444444 000 0 0 33333 5 4 7 1 55555555555555555555555555555555 7777 11111 555555555555555 7777 6 6 1111 00 7 6 444 7777 1 2 5 0 2 9 1 7 1 3 6 9 6 7777 6 00 0000000000000 000 55 22 5 6 00 4444444444444 00 6 111111 444 3 3 99 99
consensus : ACACTCGGCAAAAAAAGTTCTGCACACT---------TG--------GG-T--T----------T---T----TATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA---TCAAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTCATT----AGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CC----TG-T--T-------------TGTTAAGTTTGAA---TTA-TTG-TTT-T-TATGATA--TATAAA-------------ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T--TT--TTGCCGAGTG
Reference ( family-3414 ) : ACACTCGGCAAAAAAAGTTCTGCACACT---------TG--------GG----T----------T---T----TATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATAA--TCAAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTCATT----AGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTNTACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CC----TG-T--T-------------TGTTAAGTTTGAA--TTTA-TTG-TTT-T-TATGATA--TATAAA-------------ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T--TT--TTGCCGAGTG
gi|1 : ACACTCGGCAAAA-AAGTTCTGCACACT---------TGTGATATTTGG----TTTATAAAATGT---T----TATAAAATGAAAACTATATAACGTACGGATATGTTTTA---TAT-ATCTTGATA---AA-AACAATTTCAAACCTAACAAATAGGCGAAAACAGAATGAA-----ATCCATTCA---------CT-------AGTTCATT----AGT-----AATCAATTATCAAAGTAGACAA--------G------GGC----CACCA-GTCAAAAAT----AGT---------CAGTATTTCTTTCAATAACGTGTGTATCCACCCAGGTGT-TGTTGAA---TTGGCAA----TTATTGTATTCACCAGTATTTTAGCCATTTTTGACCGATGCCCCTTGTACACATGTGCATAAACTGACTAATGAACTAATGAATGGGTTTTCATCCTGTTT-T-CG-CC----TG-T--T-------------TGTTAAGTTTGAA---GTA-TTG-TTTGT-TATACTA--TTTAAA-------------AC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAAAATAAGTTCTTCATACT---------TG--------GAATATT----------TGGGT----TATAAAAT--AAACTGTATTTTATACAGATATGCGTTA---TAT-ATCA----AAACAA-A-------CAA-CTGAACAAATATGCGAAATCAAAATTAA-----A-------A---------CC-------CATTCACT----GGTTCATTAAT--ATTATCAAAGTAAACAT--------T------TGT----TTCCA-GTCAAAATA----GGTAAAAA--TACGGTATTTTTGTCAATAATGTGTGTCTCCACT----------TTGAA---TTCTCAA----TTATTGTATTCACGTGTATTGTAGCC-----------ATGATCTCTGTTTACATATACACAAGATAACTA
gi|11 : TGAAAACTGTACTTCATATGGATATGTTTTAAATTAT-ATAATAATAAATAA-AA---------A-TTAACAAACAGTCGGAAACAGAATGAA-----A-------ATCCATTCA-CT-------AGTCCATT----AGT-----TATCCGTTATCAAAGTAGACAG--------G------GGT----CACCAGGCCAAAAAT----GGCCAAAA--TACA-TGTTTCTGTCAATAACGGGTGTATCCACCTTGGTGT-TATTGAA---TTGTTAA----TTATAGTATTCACCTGTATTTTACTCAATTTTa
gi|12 : TTCTG-TT-T-TT-AT----TGAT--T-------------TTTTACGTTTGAA---TTA-TTG-TTT-TATATGATA--TAC-AA-------------GC-TGTTTATTTGAGTAATATAAGTTTTCA-TTTATAGCTCCAATA-CAT-GAAG---CATGCAGAG-CT-T--CTG-TTGTGGGGT
gi|13 : cttatTGAACTAGTGAATGGATTTTCATTCTGTTT-T-CG-CC----TA-A--T-------------TGTTTATGTTGAA---ATA-TTT-TTA-T-CATGATA--TATAAA-------------ATATATCCGTATGA--AAAAC-AGTTTTC-CTTTATAATCC-AATA--CC-AAAT---TGTGCAGAACCC-T--TT--TTGTCGAGTaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|14 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaatATGAACTAATTGATGGATTTCAATTCTC-TT-TTCG-CC----TG-T--T-------------TGTTAAGTGTGAA---TTA-TTG-TTTAT-TATGATA--TATAAA-------------ACATATCCGTATGA--AATAC-ATTTTTCATTTTATAACCCAAATA-CCCTCAAGTCATATGC-----TT-T--TT--TTGCatatc
gi|15 : cttggtgtatttggggttctAGAATACTCATGAACTAGTGAATGGATATTTATTCTG-TA-T-CGGCC----TA-CAAT-------------TGT---ATTTG----CTTAGTCG----------GATAAGCATGGATAG----------ACATATCCATATGA--AATAC-AGTTTTCACTTGATAATGCAAA----------G---TTT----AA-CT-T--TT--CTGCCGAGTaggttctgttgaaga
gi|16 : ctctgataatTGAACTAGAGAATGGATTTTCATTTCT-TT-T-TG-CC----TA-T--T-------------TTTTAAGTTTGAA--TAT--TTG-TTTAT-TATCATA--CATAAA-------------ACATATCCGTATGA--AAT-T-A-TTTCCAATTCGTAACTCAAAT-------AAG---TGTGCAGAA-C--T--TT--TTGCCGTGTGat
gi|17 : GTATAA--CACAC-AGTTTTCATTTTATAACCAAAAT-------AAG---TGTGCAGAA-CT-T--AG--TTGCGGAGT
gi|18 : ATTTTATAACCCAAAAG-GTC-CATG---TGTGCAGAA-CT-T--TTCCTTGCCGAGTGa
gi|19 : aCCCAAATA-CAC-CAAG---T-TGCAGAA-CT-TTCTT--TTGCCGAGT
gi|2 : ATATTCGGCAATAAAAGTTCTGCACACT---------TG--------GG----T----------T---------ATAAAATGAAAACTTTATTTCTTACGGATATATTTTA---TAT-ACCATAATAAACAA-AATAA--TCAAACTTAACAAATAGGTGAAAACAGAATGAA-----A-------A---------CT-------ACTTCATT----AGT-----AATTCACTAACAAAGTAGACAG--------G------GGT----CACCA-ATCAAAAAT----GGCCTAAG--TACATTATTTTTATCAAGAATGTCTGTTTCCACCTTGGTGTGCA--AAACACTTGGCTA-----TATTTTAT--ACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTGTACATGTGCATAAGATTACTAATGAATTAATGAATAGATTTTCATTCTG-TT-T-CG-CA----TG-T--T-------------TGTTAAATTTGAAATTTCA-TT--TTT-T-TATGATA--TATAAA-------------ACATATCCGTAAGC--AATAC-GGTTTTCATTTTATAACGCTAATACCCC-CAAG---TGAGCAGAA-CG-T--TT--TTGCCGAGTGa
gi|3 : ATACTGATGTGTTTTA---TAC-ATCATAGTAAACAATAAT----TCAAATATTACAAGTGGTCGAAAATAGAATGAA-----A-------ATCCATTCA-CA-------AGTTTATT----ACT-----AATTCATTATCATATTAGAGAG--------T------GGA----CTGCG-ATCAAAAGTTCGTGGCCAACA--TACAGTATTTCTGTCAATAATGTGTGTATCTATCTTGTTGT-TATCAAA---TTGTCAA----TTTTTGAATTCATCTGTATTTGAGCCAGTTTTGACCGATGA----TTTTTACATATGTAAAAGTTTACAAATGAAC-----AA---ATTTT-ATTCTC-TT-TTCG-CC----TG-T--T-------------TGTTAAGTTTCAA---TTA-TTA-TCTAT-TATGATA--TGTAAA-------------GCATATCCGTTTAA--AATAA-AGTTTTCATTTTATACCCCAAATA-CCC-CAAG---TGTGCAGAA-CT-A--TT--TTG
gi|4 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatat---TAT-AACATAGTAAACGA-TAT----CCAAACTTAACAAAAAGGCGAAAAGAGAATGAA-----G-------A---------TTGAAATTCAATTCATT----AGT-----AATCCATTATCAAAGTAGA-AGTAAAAATTGTATTTTGGTGACCCACCA-GTCAAAACT----TGCCAAAA--TACAATTTTTCTGTCTATAATGTGTGCGTCCACTTTGGTGT-TATTGAA---ATGTCAA----TTATTA-------------------CATTTTTGACCGATAACA--TTCATGCATGTGCATAAAATTACAAATGAACTACTGACTGGATTTTCATTCTG-TTAT-CG-CCTGTTTG-T--TAAGTTTGAATTATTGTTAATTATGNN--NNNN-NNN-NNN-N-NNNNNNN--NNNNNNNNNNNNNNNNNNNACGCACCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAAAA-CCGT--TT--TTGCCG
gi|5 : -TT-T-CG-CC----TG-T--T-------------TGTTAAGTTTGAA---TCA-TTGTTTT-T-TATGATA--TATAAA-------------ACATATCTGTATGG--AATAC-AG-TTTCATATTATAACTTAAATA-CCC-CACG---TGTGTAGA
gi|5 : CTCGGCAAAACAAGTTCTTCCCACTCGAGGTATTTG--------GG----T----------T---A----TACAAA--GAAAACTGTATTTTATAAGTATTTGATTTA---TAT-ATAGTAATAAACAA-AA-AT--TCAAACCCAAGGAA-AGAC-AAAACA--ATTCATT---C-------A---------CT-------AGTTCATTTATTAAT-----AATCCATTATTAAAGTAGACAT--------G------GTT----CACCA-G---AAAATAAA-GGTCAAAA--TACAATA-TTCTGGCAATAATATGTATATCCACATTGGTGT-TATTGAA---TTGTTGAAACCTTGATGTTTTCGCCTGTTTGTTAacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|6 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaactACTCGGCAAAAAC-GTTCTGCACACT---------TG--------GGGTATT----------TGGGT----TATAAAATGAAAACTGTATTGCATACCGATCTGTGTAA---TATTATTATTACGAACAA-AACA---TCAATCTTAACAAATAGGTGAAACCAGAATGAACATCCATTC----A---------CT-------AGTTCATT----AGT-----AATCCATTATCAACATAGACAT--------G------GGT----TGCCA-GTCAAAAAT----GACCAAAA--TTCA-TATTACTTCCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGCCAA----TTATTGTATTTACCTGTA-TTTAGCCATTTTTGACCAA
gi|7 : gcataagtaaccatacgccttACACT--ACACAAAATATTATGAACGCT---------TGA-------GG----TA---------T---T----TGGGATATAAAA--TATATTTCATACGAATATGATTTA---TAT-ATCATAA---------A-GA--TCAAACTTA-----TAGGAGAAAACA-AATGAA-----A-------AATCCATTCACT-------TGTTCATT----AGT-----AATTTATTAACAAAGTAGGCAG--------G------AGA----GACCA-GTTAAAAGT----GGGCAAAA--TACAGTCTTT-TGTCAAAAGTGTGTGTATCCACCATGGTGT-TATTGAA---T-GTCAG----TTATTGTATTAACCTGTATTTTAGCCATTTTAGACAGATGACTACTGTATACATGTTCATCAAATTACTAATGa
gi|8 : CACTCGACAAAAACAGTTATGCACACT---------TG--------GGGTG-T----------T---TGGGGTATAAAATGGAAACTGTATTTATTACGGATATGTTTTA---TAT-ATCATAATAAACAATAATAG--GCGAAC---------AGA-GAAAATACATTCAA-----A-------A-------------------GTT-ATT----AGT-----AATCCGTTACCAA-GTAGACAA--------T------TAT----CACCA-GTCAGAATT----GGTCAAAA--TACAATATTTCTGTCCAAAATGTGTGTTTCCGCCTTGGTGT-TAATGGA---TTTTCAA----TTATTGTAGCCGCCTGTATTTAAGTCATTTTTGACCGAAAACCCCTGTATACTTATGCATCGGATT
gi|9 : GTTCAGT----AGT-----AATCCATTATCAAAGTTGACAG--------G------GGT----CACCT-GT-AAAAAT----GGCAAAAAAATATAGCATTTCTGTCAATAAAGTGCAAATCCACCTTGATGT-TATTGAA---TTGTCAA----TTATTGTATTCACTTGTATTTAAGCCATTTTTGATCGATGATCCCCGTGTATAT----ATAA-----CT---GAA-----GAAGGGATTTTCATTCTG-TT-TTCG-CC----TG-T--T-------------TGT-GAGTC--AG--TTT--------T-T-T----TA--TATACA-------------ACATGCCCGTAAGA--AATA---GCTTTTATTTATTAACCCAAATA-CCC-CAAT---TGTGCAGAA-TT-TG-TT--TTGCCGA
Alignments
lowQualScore : 9999999999999999999999999999999 2222222 77777777777777777777777777777777 222222222222222 1111 1 111111 333333333333333333333 11
lowQualScore : 8 5555555555555555555555555555555 777 4 0000000 4 0 1 0 4 55555555555555555555555555555555 7777 99999 000000000000000 7777 3 0 4444 55 5 3 666 7777 0 0 4 1 2 0 0 3 0 555 3 0 3 3 000000 2 55 55 666 000000000000000000000 99 7 55 666 55 3 777777 555 3 3 77 77
lowQualScore : . ............................... ... . ....... . . . . . ................................ .... ..... ............... .... . . .... .. . . ... .... . . . . . . . . . ... . . . . ...... . .. .. ... ..................... .. . .. ... .. . ...... ... . . .. ..
lowQualScore : 7 6666666666666666666666666666666 000 0 0000000 0 9 5 7 1 99999999999999999999999999999999 7777 11111 555555555555555 7777 6 6 1111 00 7 6 444 7777 1 2 5 2 2 9 1 7 1 111 6 9 6 6 555555 0 00 00 444 999999999999999999999 55 3 00 444 00 6 111111 444 3 3 99 99
consensus : ACACTCGGCAAAAAAAGTTCTGCACACTTG--------GGGTAT-TTGGG------T----TATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTCATT----AGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCT-G-TT-T-CG-CCTG-TTTG------TTAAGTT--TG--AA---TTAT---------------------TGTTTA-T-TATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T--TT--TTGCCGAGTG
Reference ( family-3414 ) : ACACTCGGCAAAAAAAGTTCTGCACACTTG--------GG---T-TT---------T----TATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTCATT----AGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCT-G-TT-T-CG-CCTG-TTTG------TTAAGTT--TG--AA---TTAT---------------------TGTTT--T-TATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T--TT--TTGCCGAGTG
gi|1 : ACACTCGGCAAAAAA-GTTCTGCACACTTGTGATATTTGG---T-TTATAAAATGTT----TATAAAATGAAAACTATATAACGTACGGATATGTTTTA---TAT-ATCTTGATAAAAAC-AATT-TC-AAACCTAACAAATAGGCGAAAACAGAATGAA-----ATCCATTCA---------CT-------AGTTCATT----AGT-----AATCAATTATCAAAGTAGACAA--------G------GGC----CACCA-GTCAAAAAT----AGT---------CAGTATTTCTTTCAATAACGTGTGTATCCACCCAGGTGT-TGTTGAA---TTGGCAA----TTATTGTATTCACCAGTATTTTAGCCATTTTTGACCGATGCCCCTTGTACACATGTGCATAAACTGACTAATGAACTAATGAATGGGTTTTCATCCT-GTTT-T-CG-CCTG-TTTG------TTAAGTT--TG--AA---GTAT---------------------TGTTTG-T-TATACTA--TTTAAA---AC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAAAATAAGTTCTTCATACTTG--------GAATAT-TTGGG------T----TATAAAAT--AAACTGTATTTTATACAGATATGCGTTA---TAT-ATCA----AAACAA-A-----C-AA-CTGAACAAATATGCGAAATCAAAATTAA-----A-------A---------CC-------CATTCACT----GGTTCATTAAT--ATTATCAAAGTAAACAT--------T------TGT----TTCCA-GTCAAAATA----GGTAAAAA--TACGGTATTTTTGTCAATAATGTGTGTCTCCACT----------TTGAA---TTCTCAA----TTATTGTATTCACGTGTATTGTAGCC-----------ATGATCTCTGTTTACATATACACAAGATAACTA
gi|11 : TGAAAACTGTACTTCATATGGATATGTTTTAAATTAT-ATAATAATAAATAA-AA--------A-TTAACAAACAGTCGGAAACAGAATGAA-----A-------ATCCATTCA-CT-------AGTCCATT----AGT-----TATCCGTTATCAAAGTAGACAG--------G------GGT----CACCAGGCCAAAAAT----GGCCAAAA--TACA-TGTTTCTGTCAATAACGGGTGTATCCACCTTGGTGT-TATTGAA---TTGTTAA----TTATAGTATTCACCTGTATTTTACTCAATTTTa
gi|12 : TTCT-G-TT-T-TT-ATTGATTTT------TTACGTT--TG--AA---TTAT---------------------TGTTT--TATATGATA--TAC-AA---GC-TGTTTATTTGAGTAATATAAGTTTTCA-TTTATAGCTCCAATA-CAT-GAAG---CATGCAGAG-CT-T--CTG-TTGTGGGGT
gi|13 : cttatTGAACTAGTGAATGGATTTTCATTCT-G-TT-TTCG-CCTA-ATTG------TTTATGT--TG--AA---ATAT---------------------TTTTA--T-CATGATA--TATAAA---ATATATCCGTATGA--AAAAC-AGTTTTC-CTTTATAATCC-AATA--CC-AAAT---TGTGCAGAACCC-T--TT--TTGTCGAGTaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|14 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaatATGAACTAATTGATGGATTTCAATTCT-C-TT-TTCG-CCTG-TTTG------TTAAGTG--TG--AA---TTAT---------------------TGTTTA-T-TATGATA--TATAAA---ACATATCCGTATGA--AATAC-ATTTTTCATTTTATAACCCAAATA-CCCTCAAGTCATATGC-----TT-T--TT--TTGCatatc
gi|15 : cttggtgtatttggggttctAGAATACTCATGAACTAGTGAATGGATATTTATTCT-G-TA-T-CGGCCTA-C-----------AA--T--TG--TA---TT-----------------------TGCTTAGT-CG-GATAAGCATGGATAGACATATCCATATGA--AATAC-AGTTTTCACTTGATAATGCAAA----------G---TTT----AA-CT-T--TT--CTGCCGAGTaggttctgttgaaga
gi|16 : ctctgataatTGAACTAGAGAATGGATTTTCATTTC-T-TT-T-TG-CCTA-TTTT------TTAAGTT--TG--AA---TATT---------------------TGTTTA-T-TATCATA--CATAAA---ACATATCCGTATGA--AAT-T-A-TTTCCAATTCGTAACTCAAAT-------AAG---TGTGCAGAA-C--T--TT--TTGCCGTGTGat
gi|17 : GTATAA--CACAC-AGTTTTCATTTTATAACCAAAAT-------AAG---TGTGCAGAA-CT-T--AG--TTGCGGAGT
gi|18 : ATTTTATAACCCAAAAG-GTC-CATG---TGTGCAGAA-CT-T--TTCCTTGCCGAGTGa
gi|19 : aCCCAAATA-CAC-CAAG---T-TGCAGAA-CT-TTCTT--TTGCCGAGT
gi|2 : ATATTCGGCAATAAAAGTTCTGCACACTTG--------GG---T-T----------------ATAAAATGAAAACTTTATTTCTTACGGATATATTTTA---TAT-ACCATAATAAACAA-AATAATC-AAACTTAACAAATAGGTGAAAACAGAATGAA-----A-------A---------CT-------ACTTCATT----AGT-----AATTCACTAACAAAGTAGACAG--------G------GGT----CACCA-ATCAAAAAT----GGCCTAAG--TACATTATTTTTATCAAGAATGTCTGTTTCCACCTTGGTGTGCA--AAACACTTGGCTA-----TATTTTAT--ACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTGTACATGTGCATAAGATTACTAATGAATTAATGAATAGATTTTCATTCT-G-TT-T-CG-CATG-TTTG------TTAAATT--TG--AAATTTCAT---------------------T-TTT--T-TATGATA--TATAAA---ACATATCCGTAAGC--AATAC-GGTTTTCATTTTATAACGCTAATACCCC-CAAG---TGAGCAGAA-CG-T--TT--TTGCCGAGTGa
gi|3 : ATACTGATGTGTTTTA---TAC-ATCATAGTAAACAATAAT--TC-AAATATTACAAGTGGTCGAAAATAGAATGAA-----A-------ATCCATTCA-CA-------AGTTTATT----ACT-----AATTCATTATCATATTAGAGAG--------T------GGA----CTGCG-ATCAAAAGTTCGTGGCCAACA--TACAGTATTTCTGTCAATAATGTGTGTATCTATCTTGTTGT-TATCAAA---TTGTCAA----TTTTTGAATTCATCTGTATTTGAGCCAGTTTTGACCGATGA----TTTTTACATATGTAAAAGTTTACAAATGAAC-----AA---ATTTT-ATTCTCT-TT-T-CG-CCTG-TTTG------TTAAGTT--TC--AA---TTAT---------------------TATCTA-T-TATGATA--TGTAAA---GCATATCCGTTTAA--AATAA-AGTTTTCATTTTATACCCCAAATA-CCC-CAAG---TGTGCAGAA-CT-A--TT--TTG
gi|4 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatat---TAT-AACATAGTAAACGA---TA-TCCAAACTTAACAAAAAGGCGAAAAGAGAATGAA-----G-------A---------TTGAAATTCAATTCATT----AGT-----AATCCATTATCAAAGTAGA-AGTAAAAATTGTATTTTGGTGACCCACCA-GTCAAAACT----TGCCAAAA--TACAATTTTTCTGTCTATAATGTGTGCGTCCACTTTGGTGT-TATTGAA---ATGTCAA----TTATTA-------------------CATTTTTGACCGATAACA--TTCATGCATGTGCATAAAATTACAAATGAACTACTGACTGGATTTTCATTCT-G-TTAT-CG-CCTG-TTTGTTAAGTTTGAATTATTGTTAA---TTATGNNNNNNNNNNNNNNNNNNNNNNNNN--N-NNNNNNN--NNNNNN---ACGCACCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAAAA-CCGT--TT--TTGCCG
gi|5 : -TT-T-CG-CCTG-TTTG------TTAAGTT--TG--AA---TCAT---------------------TGTTT--TTTATGATA--TATAAA---ACATATCTGTATGG--AATAC-AG-TTTCATATTATAACTTAAATA-CCC-CACG---TGTGTAGA
gi|5 : CTCGGCAAAACAAGTTCTTCCCACTCG--------AGGTAT-TTGGG------T----TATACAAAGAAAACTGTATTTTATAAGTATTTGATTTA---TAT-ATAGTAATAAACAA-AAAT-TC-AAACCCAAGGAA-AGAC-AAAACA--ATTCATT---C-------A---------CT-------AGTTCATTTATTAAT-----AATCCATTATTAAAGTAGACAT--------G------GTT----CACCA-G---AAAATAAA-GGTCAAAA--TACAATA-TTCTGGCAATAATATGTATATCCACATTGGTGT-TATTGAA---TTGTTGAAACCTTGATGTTTTCGCCTGTTTGTTAacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|6 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaactACTCGGCAAAAAC-GTTCTGCACACTTG--------GGGTAT-TTGGG------T----TATAAAATGAAAACTGTATTGCATACCGATCTGTGTAA---TATTATTATTACGAACAA-AACA-TC-AATCTTAACAAATAGGTGAAACCAGAATGAACATCCATTC----A---------CT-------AGTTCATT----AGT-----AATCCATTATCAACATAGACAT--------G------GGT----TGCCA-GTCAAAAAT----GACCAAAA--TTCA-TATTACTTCCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGCCAA----TTATTGTATTTACCTGTA-TTTAGCCATTTTTGACCAA
gi|7 : gcataagtaaccatacgccttACACT--ACACAAAATATTATGAACGCTTGA-------GG---T-AT---------T----TGGGATATAAAA--TATATTTCATACGAATATGATTTA---TAT-ATCATAA---------AGA-TC-AAACTTA-----TAGGAGAAAACA-AATGAA-----A-------AATCCATTCACT-------TGTTCATT----AGT-----AATTTATTAACAAAGTAGGCAG--------G------AGA----GACCA-GTTAAAAGT----GGGCAAAA--TACAGTCTTT-TGTCAAAAGTGTGTGTATCCACCATGGTGT-TATTGAA---T-GTCAG----TTATTGTATTAACCTGTATTTTAGCCATTTTAGACAGATGACTACTGTATACATGTTCATCAAATTACTAATGa
gi|8 : CACTCGACAAAAACAGTTATGCACACTTG--------GGG--TGTT---------TGGGGTATAAAATGGAAACTGTATTTATTACGGATATGTTTTA---TAT-ATCATAATAAACAATAATA----------GGCGAACAGA-GAAAATACATTCAA-----A--------------------------AGTT-ATT----AGT-----AATCCGTTACC-AAGTAGACAA--------T------TAT----CACCA-GTCAGAATT----GGTCAAAA--TACAATATTTCTGTCCAAAATGTGTGTTTCCGCCTTGGTGT-TAATGGA---TTTTCAA----TTATTGTAGCCGCCTGTATTTAAGTCATTTTTGACCGAAAACCCCTGTATACTTATGCATCGGATT
gi|9 : GTTCAGT----AGT-----AATCCATTATCAAAGTTGACAG--------G------GGT----CACCT-GT-AAAAAT----GGCAAAAAAATATAGCATTTCTGTCAATAAAGTGCAAATCCACCTTGATGT-TATTGAA---TTGTCAA----TTATTGTATTCACTTGTATTTAAGCCATTTTTGATCGATGATCCCCGTGTATAT----ATAA-----CT---GAA-----GAAGGGATTTTCATTCT-G-TT-TTCG-CCTG-TTTG------T---------G--AG---TCA-----------------------GTTT--T-T-T--TA--TATACA---ACATGCCCGTAAGA--AATA---GCTTTTATTTATTAACCCAAATA-CCC-CAAT---TGTGCAGAA-TT-TG-TT--TTGCCGA
Alignments
lowQualScore : 1111111111 2222222 77777777777777777777777777777777 222222222222222 1111 1 11111111 22222222222222222222
lowQualScore : 4 66 1 9999999999 5 2 777 4 0000000 4 0 1 0 1 55555555555555555555555555555555 7777 99999 000000000000000 7777 3 0 4444 55 5 3 666 7777 0 0 4 1 2 0 0 3 0 7 3 0 3 3 0 33333333 55 666 99999999999999999999 1 4 55 666 55 3 0 9999999 666 4 55 4 4
lowQualScore : . .. . .......... . . ... . ....... . . . . . ................................ .... ..... ............... .... . . .... .. . . ... .... . . . . . . . . . . . . . . . ........ .. ... .................... . . .. ... .. . . ....... ... . .. . .
lowQualScore : 4 44 9 4444444444 0 0 000 0 0000000 0 9 5 7 6 99999999999999999999999999999999 7777 11111 555555555555555 7777 6 6 1111 00 7 6 444 7777 1 2 5 2 2 9 1 7 1 3 6 9 6 6 5 22222222 00 444 55555555555555555555 5 8 00 444 00 6 5 5555555 444 0 33 0 0
consensus : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T-TT-TTGCCGAGTG
Reference ( family-3414 ) : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T-TT-TTGCCGAGTG
gi|1 : ACACTCGGCAAA-A--AAGTTCTGCACACTTGTGATATTTGGTTTATAAAATGTTTATAAAATGAAAACTATATAACGTACGGATATGTTTTA---TAT-ATCTTGATAAAAAC-AATT-TC-AAACCTAACAAATAGGCGAAAACAGAATGAA-----ATCCATTCA---------CT-------AGTTC----ATTAGT-----AATCAATTATCAAAGTAGACAA--------G------GGC----CACCA-GTCAAAAAT----AGT---------CAGTATTTCTTTCAATAACGTGTGTATCCACCCAGGTGT-TGTTGAA---TTGGCAA----TTATTGTATTCACCAGTATTTTAGCCATTTTTGACCGATGCCCCTTGTACACATGTGCATAAACTGACTAATGAACTAATGAATGGGTTTTCATCCTGTTT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---GTAT--------------------TGTTTGTTATACTA--TTTAAA---AC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAAA-A-TAAGTTCTTCATACTTGGAATATTTGG----------GTT-ATAAAAT--AAACTGTATTTTATACAGATATGCGTTA---TAT-ATCA----AAACAA-A-----C-AA-CTGAACAAATATGCGAAATCAAAATTAA-----A-------A---------CC-------CATTC----ACTGGTTCATTAAT--ATTATCAAAGTAAACAT--------T------TGT----TTCCA-GTCAAAATA----GGTAAAAA--TACGGTATTTTTGTCAATAATGTGTGTCTCCACT----------TTGAA---TTCTCAA----TTATTGTATTCACGTGTATTGTAGCC-----------ATGATCTCTGTTTACATATACACAAGATAACTA
gi|11 : TGAAAACTGTACTTCATATGGATATGTTTTAAATTAT-ATAATAATAAATAA-AA--------A-TTAACAAACAGTCGGAAACAGAATGAA-----A-------ATCCATTCA-CT-------AGTCC----ATTAGT-----TATCCGTTATCAAAGTAGACAG--------G------GGT----CACCAGGCCAAAAAT----GGCCAAAA--TACA-TGTTTCTGTCAATAACGGGTGTATCCACCTTGGTGT-TATTGAA---TTGTTAA----TTATAGTATTCACCTGTATTTTACTCAATTTTa
gi|12 : TTCTG-TT-T-TT-ATTGATTTTTTACGT--------TTG--AA---TTAT--------------------TGTTTTATATGATA--TAC-AA---GC-TGTTTATTTGAGTAATATAAGTTTTCA-TTTATAGCTCCAATA-CAT-GAAG---CATGCAGAG-CT-T-CTGTTGTGGGGT
gi|13 : cttatTGAACTAGTGAATGGATTTTCATTCTGTTT-T-CG-CCTA-ATTGTTTATG--------TTG--AA---ATAT--------------------T-TTTATCATGATA--TATAAA---ATATATCCGTATGA--AAAAC-AGTTTTC-CTTTATAATCC-AATA--CC-AAAT---TGTGCAGAACCC-T-TT-TTGTCGAGTaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|14 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaatATGAACTAATTGATGGATTTCAATTCTC-TT-TTCG-CCTG-TTTGTTAAGT--------GTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-ATTTTTCATTTTATAACCCAAATA-CCCTCAAGTCATATGC-----TT-T-TT-TTGCatatc
gi|15 : cttggtgtatttggggttctAGAATACTCATGAACTAGTGAATGGATATTTATTCTG-TA-T-CGGCCTA-C-----AA----------TTG--TA---TT----------------------TGCTTAGTCGGATAAGCATGGATAGACATATCCATATGA--AATAC-AGTTTTCACTTGATAATGCAAA----------G---TTT----AA-CT-T-TT-CTGCCGAGTaggttctgttgaaga
gi|16 : ctctgataatTGAACTAGAGAATGGATTTTCATTTCT-TT-T-TG-CCTA-TTTTTTAAGT--------TTG--AA---TATT--------------------TGTTTATTATCATA--CATAAA---ACATATCCGTATGA--AAT-T-A-TTTCCAATTCGTAACTCAAAT-------AAG---TGTGCAGAA-C--T-TT-TTGCCGTGTGat
gi|17 : GTATAA--CACAC-AGTTTTCATTTTATAACCAAAAT-------AAG---TGTGCAGAA-CT-T-AG-TTGCGGAGT
gi|18 : ACACTCGGCAAGGA-AAAGTTCTGCACACATGGACCTTTTGG----------GTT-ATAAAATa
gi|19 : ACTCGGCAAA-AGAAAGTTCTGCA-ACTTGGTGTATTTGG----------G
gi|2 : ATATTCGGCAAT-A-AAAGTTCTGCACACTTGGG-------------------TT-ATAAAATGAAAACTTTATTTCTTACGGATATATTTTA---TAT-ACCATAATAAACAA-AATAATC-AAACTTAACAAATAGGTGAAAACAGAATGAA-----A-------A---------CT-------ACTTC----ATTAGT-----AATTCACTAACAAAGTAGACAG--------G------GGT----CACCA-ATCAAAAAT----GGCCTAAG--TACATTATTTTTATCAAGAATGTCTGTTTCCACCTTGGTGTGCA--AAACACTTGGCTA-----TATTTTAT--ACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTGTACATGTGCATAAGATTACTAATGAATTAATGAATAGATTTTCATTCTG-TT-T-CG-CATG-TTTGTTAAAT--------TTG--AAATTTCAT--------------------T-TTT-TTATGATA--TATAAA---ACATATCCGTAAGC--AATAC-GGTTTTCATTTTATAACGCTAATACCCC-CAAG---TGAGCAGAA-CG-T-TT-TTGCCGAGTGa
gi|3 : ATACTGATGTGTTTTA---TAC-ATCATAGTAAACAATAAT--TC-AAATATTACAAGTGGTCGAAAATAGAATGAA-----A-------ATCCATTCA-CA-------AGTTT----ATTACT-----AATTCATTATCATATTAGAGAG--------T------GGA----CTGCG-ATCAAAAGTTCGTGGCCAACA--TACAGTATTTCTGTCAATAATGTGTGTATCTATCTTGTTGT-TATCAAA---TTGTCAA----TTTTTGAATTCATCTGTATTTGAGCCAGTTTTGACCGATGA----TTTTTACATATGTAAAAGTTTACAAATGAAC-----AA---ATTTT-ATTCTC-TT-TTCG-CCTG-TTTGTTAAGT--------TTC--AA---TTAT--------------------TATCTATTATGATA--TGTAAA---GCATATCCGTTTAA--AATAA-AGTTTTCATTTTATACCCCAAATA-CCC-CAAG---TGTGCAGAA-CT-A-TT-TTG
gi|4 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatat---TAT-AACATAGTAAACGA---TA-TCCAAACTTAACAAAAAGGCGAAAAGAGAATGAA-----G-------A---------TTGAAATTCAATTC----ATTAGT-----AATCCATTATCAAAGTAGA-AGTAAAAATTGTATTTTGGTGACCCACCA-GTCAAAACT----TGCCAAAA--TACAATTTTTCTGTCTATAATGTGTGCGTCCACTTTGGTGT-TATTGAA---ATGTCAA----TTATTA-------------------CATTTTTGACCGATAACA--TTCATGCATGTGCATAAAATTACAAATGAACTACTGACTGGATTTTCATTCTG-TTAT-CG-CCTG-TTTGTTAAGTTTGAATTATTGTTAA---TTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNN---ACGCACCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAAAA-CCGT-TT-TTGCCG
gi|5 : -TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TCAT--------------------TGTTTTTTATGATA--TATAAA---ACATATCTGTATGG--AATAC-AG-TTTCATATTATAACTTAAATA-CCC-CACG---TGTGTAGA
gi|5 : CTCGGCAAA-A-CAAGTTCTTCCCACTCGAGGTATTTGG----------GTT-ATACAAAGAAAACTGTATTTTATAAGTATTTGATTTA---TAT-ATAGTAATAAACAA-AAAT-TC-AAACCCAAGGAA-AGAC-AAAAC--AATTCATT---C-------A---------CT-------AGTTCATTTATTAAT-----AATCCATTATTAAAGTAGACAT--------G------GTT----CACCA-G---AAAATAAA-GGTCAAAA--TACAATA-TTCTGGCAATAATATGTATATCCACATTGGTGT-TATTGAA---TTGTTGAAACCTTGATGTTTTCGCCTGTTTGTTAacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|6 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaactACTCGGCAAA-A-AC-GTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTGCATACCGATCTGTGTAA---TATTATTATTACGAACAA-AACA-TC-AATCTTAACAAATAGGTGAAACCAGAATGAACATCCATTC----A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAACATAGACAT--------G------GGT----TGCCA-GTCAAAAAT----GACCAAAA--TTCA-TATTACTTCCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGCCAA----TTATTGTATTTACCTGTA-TTTAGCCATTTTTGACCAA
gi|7 : gcataagtaaccatacgccttACACT--ACACA-A-AATATTATGAACGCTTGAGGTATTTGG----------GAT-ATAAAATA-------TATTTCATACGAATATGATTTA---TAT-ATCATAA---------AGA-TC-AAACTTA-----TAGGAGAAAACA-AATGAA-----A-------AATCCATTCACT-------TGTTC----ATTAGT-----AATTTATTAACAAAGTAGGCAG--------G------AGA----GACCA-GTTAAAAGT----GGGCAAAA--TACAGTCTTT-TGTCAAAAGTGTGTGTATCCACCATGGTGT-TATTGAA---T-GTCAG----TTATTGTATTAACCTGTATTTTAGCCATTTTAGACAGATGACTACTGTATACATGTTCATCAAATTACTAATGa
gi|8 : CACTCGACAAA-A-ACAGTTATGCACACTTGGGGTGTTTGG----------GGT-ATAAAATGGAAACTGTATTTATTACGGATATGTTTTA---TAT-ATCATAATAAACAATAATA----------GGCGAACAGA-GAAAATACATTCAA-----A--------------------------AGTT-----ATTAGT-----AATCCGTTACC-AAGTAGACAA--------T------TAT----CACCA-GTCAGAATT----GGTCAAAA--TACAATATTTCTGTCCAAAATGTGTGTTTCCGCCTTGGTGT-TAATGGA---TTTTCAA----TTATTGTAGCCGCCTGTATTTAAGTCATTTTTGACCGAAAACCCCTGTATACTTATGCATCGGATT
gi|9 : GTTC----AGTAGT-----AATCCATTATCAAAGTTGACAG--------G------GGT----CACCT-GT-AAAAAT----GGCAAAAAAATATAGCATTTCTGTCAATAAAGTGCAAATCCACCTTGATGT-TATTGAA---TTGTCAA----TTATTGTATTCACTTGTATTTAAGCCATTTTTGATCGATGATCCCCGTGTATAT----ATAA-----CT---GAA-----GAAGGGATTTTCATTCTG-TT-TTCG-CCTG-TTTGT---------------G--AG---TCA----------------------GTTTTTT----TA--TATACA---ACATGCCCGTAAGA--AATA---GCTTTTATTTATTAACCCAAATA-CCC-CAAT---TGTGCAGAA-TT-TGTT-TTGCCGA
Alignments
lowQualScore : 1111111111 2222222 77777777777777777777777777777777 222222222222222 1111 1 11111111 22222222222222222222
lowQualScore : 4 66 1 9999999999 5 2 777 4 0000000 4 0 1 0 1 55555555555555555555555555555555 7777 99999 000000000000000 7777 3 0 4444 55 5 3 666 7777 0 0 4 1 2 0 0 3 0 7 3 0 3 3 0 33333333 55 666 99999999999999999999 1 4 55 666 55 3 0 9999999 666 4 55 4 4
lowQualScore : . .. . .......... . . ... . ....... . . . . . ................................ .... ..... ............... .... . . .... .. . . ... .... . . . . . . . . . . . . . . . ........ .. ... .................... . . .. ... .. . . ....... ... . .. . .
lowQualScore : 4 44 9 4444444444 0 0 000 0 0000000 0 9 5 7 6 99999999999999999999999999999999 7777 11111 555555555555555 7777 6 6 1111 00 7 6 444 7777 1 2 5 2 2 9 1 7 1 3 6 9 6 6 5 22222222 00 444 55555555555555555555 5 8 00 444 00 6 5 5555555 444 0 33 0 0
consensus : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T-TT-TTGCCGAGTG
Reference ( family-3414 ) : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T-TT-TTGCCGAGTG
gi|1 : ACACTCGGCAAA-A--AAGTTCTGCACACTTGTGATATTTGGTTTATAAAATGTTTATAAAATGAAAACTATATAACGTACGGATATGTTTTA---TAT-ATCTTGATAAAAAC-AATT-TC-AAACCTAACAAATAGGCGAAAACAGAATGAA-----ATCCATTCA---------CT-------AGTTC----ATTAGT-----AATCAATTATCAAAGTAGACAA--------G------GGC----CACCA-GTCAAAAAT----AGT---------CAGTATTTCTTTCAATAACGTGTGTATCCACCCAGGTGT-TGTTGAA---TTGGCAA----TTATTGTATTCACCAGTATTTTAGCCATTTTTGACCGATGCCCCTTGTACACATGTGCATAAACTGACTAATGAACTAATGAATGGGTTTTCATCCTGTTT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---GTAT--------------------TGTTTGTTATACTA--TTTAAA---AC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAAA-A-TAAGTTCTTCATACTTGGAATATTTGG----------GTT-ATAAAAT--AAACTGTATTTTATACAGATATGCGTTA---TAT-ATCA----AAACAA-A-----C-AA-CTGAACAAATATGCGAAATCAAAATTAA-----A-------A---------CC-------CATTC----ACTGGTTCATTAAT--ATTATCAAAGTAAACAT--------T------TGT----TTCCA-GTCAAAATA----GGTAAAAA--TACGGTATTTTTGTCAATAATGTGTGTCTCCACT----------TTGAA---TTCTCAA----TTATTGTATTCACGTGTATTGTAGCC-----------ATGATCTCTGTTTACATATACACAAGATAACTA
gi|11 : TGAAAACTGTACTTCATATGGATATGTTTTAAATTAT-ATAATAATAAATAA-AA--------A-TTAACAAACAGTCGGAAACAGAATGAA-----A-------ATCCATTCA-CT-------AGTCC----ATTAGT-----TATCCGTTATCAAAGTAGACAG--------G------GGT----CACCAGGCCAAAAAT----GGCCAAAA--TACA-TGTTTCTGTCAATAACGGGTGTATCCACCTTGGTGT-TATTGAA---TTGTTAA----TTATAGTATTCACCTGTATTTTACTCAATTTTa
gi|12 : TTCTG-TT-T-TT-ATTGATTTTTTACGT--------TTG--AA---TTAT--------------------TGTTTTATATGATA--TAC-AA---GC-TGTTTATTTGAGTAATATAAGTTTTCA-TTTATAGCTCCAATA-CAT-GAAG---CATGCAGAG-CT-T-CTGTTGTGGGGT
gi|13 : cttatTGAACTAGTGAATGGATTTTCATTCTGTTT-T-CG-CCTA-ATTGTTTATG--------TTG--AA---ATAT--------------------T-TTTATCATGATA--TATAAA---ATATATCCGTATGA--AAAAC-AGTTTTC-CTTTATAATCC-AATA--CC-AAAT---TGTGCAGAACCC-T-TT-TTGTCGAGTaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|14 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaatATGAACTAATTGATGGATTTCAATTCTC-TT-TTCG-CCTG-TTTGTTAAGT--------GTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-ATTTTTCATTTTATAACCCAAATA-CCCTCAAGTCATATGC-----TT-T-TT-TTGCatatc
gi|15 : cttggtgtatttggggttctAGAATACTCATGAACTAGTGAATGGATATTTATTCTG-TA-T-CGGCCTA-C-----AA----------TTG--TA---TT----------------------TGCTTAGTCGGATAAGCATGGATAGACATATCCATATGA--AATAC-AGTTTTCACTTGATAATGCAAA----------G---TTT----AA-CT-T-TT-CTGCCGAGTaggttctgttgaaga
gi|16 : ctctgataatTGAACTAGAGAATGGATTTTCATTTCT-TT-T-TG-CCTA-TTTTTTAAGT--------TTG--AA---TATT--------------------TGTTTATTATCATA--CATAAA---ACATATCCGTATGA--AAT-T-A-TTTCCAATTCGTAACTCAAAT-------AAG---TGTGCAGAA-C--T-TT-TTGCCGTGTGat
gi|17 : GTATAA--CACAC-AGTTTTCATTTTATAACCAAAAT-------AAG---TGTGCAGAA-CT-T-AG-TTGCGGAGT
gi|18 : ACACTCGGCAAGGA-AAAGTTCTGCACACATGGACCTTTTGG----------GTT-ATAAAATa
gi|19 : ACTCGGCAAA-AGAAAGTTCTGCA-ACTTGGTGTATTTGG----------G
gi|2 : ATATTCGGCAAT-A-AAAGTTCTGCACACTTGGG-------------------TT-ATAAAATGAAAACTTTATTTCTTACGGATATATTTTA---TAT-ACCATAATAAACAA-AATAATC-AAACTTAACAAATAGGTGAAAACAGAATGAA-----A-------A---------CT-------ACTTC----ATTAGT-----AATTCACTAACAAAGTAGACAG--------G------GGT----CACCA-ATCAAAAAT----GGCCTAAG--TACATTATTTTTATCAAGAATGTCTGTTTCCACCTTGGTGTGCA--AAACACTTGGCTA-----TATTTTAT--ACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTGTACATGTGCATAAGATTACTAATGAATTAATGAATAGATTTTCATTCTG-TT-T-CG-CATG-TTTGTTAAAT--------TTG--AAATTTCAT--------------------T-TTT-TTATGATA--TATAAA---ACATATCCGTAAGC--AATAC-GGTTTTCATTTTATAACGCTAATACCCC-CAAG---TGAGCAGAA-CG-T-TT-TTGCCGAGTGa
gi|3 : ATACTGATGTGTTTTA---TAC-ATCATAGTAAACAATAAT--TC-AAATATTACAAGTGGTCGAAAATAGAATGAA-----A-------ATCCATTCA-CA-------AGTTT----ATTACT-----AATTCATTATCATATTAGAGAG--------T------GGA----CTGCG-ATCAAAAGTTCGTGGCCAACA--TACAGTATTTCTGTCAATAATGTGTGTATCTATCTTGTTGT-TATCAAA---TTGTCAA----TTTTTGAATTCATCTGTATTTGAGCCAGTTTTGACCGATGA----TTTTTACATATGTAAAAGTTTACAAATGAAC-----AA---ATTTT-ATTCTC-TT-TTCG-CCTG-TTTGTTAAGT--------TTC--AA---TTAT--------------------TATCTATTATGATA--TGTAAA---GCATATCCGTTTAA--AATAA-AGTTTTCATTTTATACCCCAAATA-CCC-CAAG---TGTGCAGAA-CT-A-TT-TTG
gi|4 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatat---TAT-AACATAGTAAACGA---TA-TCCAAACTTAACAAAAAGGCGAAAAGAGAATGAA-----G-------A---------TTGAAATTCAATTC----ATTAGT-----AATCCATTATCAAAGTAGA-AGTAAAAATTGTATTTTGGTGACCCACCA-GTCAAAACT----TGCCAAAA--TACAATTTTTCTGTCTATAATGTGTGCGTCCACTTTGGTGT-TATTGAA---ATGTCAA----TTATTA-------------------CATTTTTGACCGATAACA--TTCATGCATGTGCATAAAATTACAAATGAACTACTGACTGGATTTTCATTCTG-TTAT-CG-CCTG-TTTGTTAAGTTTGAATTATTGTTAA---TTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNN---ACGCACCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAAAA-CCGT-TT-TTGCCG
gi|5 : -TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TCAT--------------------TGTTTTTTATGATA--TATAAA---ACATATCTGTATGG--AATAC-AG-TTTCATATTATAACTTAAATA-CCC-CACG---TGTGTAGA
gi|5 : CTCGGCAAA-A-CAAGTTCTTCCCACTCGAGGTATTTGG----------GTT-ATACAAAGAAAACTGTATTTTATAAGTATTTGATTTA---TAT-ATAGTAATAAACAA-AAAT-TC-AAACCCAAGGAA-AGAC-AAAAC--AATTCATT---C-------A---------CT-------AGTTCATTTATTAAT-----AATCCATTATTAAAGTAGACAT--------G------GTT----CACCA-G---AAAATAAA-GGTCAAAA--TACAATA-TTCTGGCAATAATATGTATATCCACATTGGTGT-TATTGAA---TTGTTGAAACCTTGATGTTTTCGCCTGTTTGTTAacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|6 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaactACTCGGCAAA-A-AC-GTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTGCATACCGATCTGTGTAA---TATTATTATTACGAACAA-AACA-TC-AATCTTAACAAATAGGTGAAACCAGAATGAACATCCATTC----A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAACATAGACAT--------G------GGT----TGCCA-GTCAAAAAT----GACCAAAA--TTCA-TATTACTTCCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGCCAA----TTATTGTATTTACCTGTA-TTTAGCCATTTTTGACCAA
gi|7 : gcataagtaaccatacgccttACACT--ACACA-A-AATATTATGAACGCTTGAGGTATTTGG----------GAT-ATAAAATA-------TATTTCATACGAATATGATTTA---TAT-ATCATAA---------AGA-TC-AAACTTA-----TAGGAGAAAACA-AATGAA-----A-------AATCCATTCACT-------TGTTC----ATTAGT-----AATTTATTAACAAAGTAGGCAG--------G------AGA----GACCA-GTTAAAAGT----GGGCAAAA--TACAGTCTTT-TGTCAAAAGTGTGTGTATCCACCATGGTGT-TATTGAA---T-GTCAG----TTATTGTATTAACCTGTATTTTAGCCATTTTAGACAGATGACTACTGTATACATGTTCATCAAATTACTAATGa
gi|8 : CACTCGACAAA-A-ACAGTTATGCACACTTGGGGTGTTTGG----------GGT-ATAAAATGGAAACTGTATTTATTACGGATATGTTTTA---TAT-ATCATAATAAACAATAATA----------GGCGAACAGA-GAAAATACATTCAA-----A--------------------------AGTT-----ATTAGT-----AATCCGTTACC-AAGTAGACAA--------T------TAT----CACCA-GTCAGAATT----GGTCAAAA--TACAATATTTCTGTCCAAAATGTGTGTTTCCGCCTTGGTGT-TAATGGA---TTTTCAA----TTATTGTAGCCGCCTGTATTTAAGTCATTTTTGACCGAAAACCCCTGTATACTTATGCATCGGATT
gi|9 : GTTC----AGTAGT-----AATCCATTATCAAAGTTGACAG--------G------GGT----CACCT-GT-AAAAAT----GGCAAAAAAATATAGCATTTCTGTCAATAAAGTGCAAATCCACCTTGATGT-TATTGAA---TTGTCAA----TTATTGTATTCACTTGTATTTAAGCCATTTTTGATCGATGATCCCCGTGTATAT----ATAA-----CT---GAA-----GAAGGGATTTTCATTCTG-TT-TTCG-CCTG-TTTGT---------------G--AG---TCA----------------------GTTTTTT----TA--TATACA---ACATGCCCGTAAGA--AATA---GCTTTTATTTATTAACCCAAATA-CCC-CAAT---TGTGCAGAA-TT-TGTT-TTGCCGA
blockSeqs : G GA A . . A AAT T AATAAT C T A AAATCCATTCACT ATTT TCATT TAAAAATTGTATTTT GACC G TCGT AA G G CAC AACC T T A G T A T G A TTGAATTA TT ATT GNNNNNNNNNNNNNNNNNNN G T AG TAG . . ACCCTC TCA C CG G .
blockSeqs : . T C . . A . . TAATT . C G AATCCATTCACT . . T . . AAA . T . . . C G G A . . T . . . . . . G A . . . . ACCCCC . . C . .
blockSeqs : . A G . . A . . AAATT . T G AATCCATTCACA . . G . . . . G . . . A T A G . . T . . . . . . G A . . . . ACCCC . . T . .
blockSeqs : . A G . . A . . AACAT . T G CATCCATTCACT . . G . . . . A . . . C A G G . . . . . . . . . G A . . . . ACCCC . . T . .
blockSeqs : . C G . . G . . TAATA . A G GATTGAAATTC . . T . . . . A . . . C A G A . . . . . . . . . A A . . . . ACCCC . . T . .
blockSeqs : . A G . . . . . AGAT . T G TTCACT . . G . . . . G . . . . A A C . . . . . . . . . N A . . . . ACCCC . . G . .
blockSeqs : . A G . . . . . TAT . T C AACC . . G . . . . A . . . . G . . . . . . . . . . . G N . . . . ACCA . . T . .
blockSeqs : . A . . . . AA . C . AACT . . G . . . . G . . . . . . . . . . . . . G T . . . . . . . T . .
blockSeqs : . . A . . . A . . T . . . . . . . . . . . . . . . . . . T . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : A* ********** AATCCATTCACT******************** **
originalCons : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAA-----A-------A---------CT-------AGTTC----ATTAGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T-TT-TTGCCGAGTG
finalCons : ACACTCGGCAAA-AA-AAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGTTTTA---TAT-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAAAATCCATTCACT--------------------AGTTC----ATTAGT-----AATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CG-CCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATA--TATAAA---ACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAA-CT-T-TT-TTGCCGAGTG
Alignments
lowQualScore : 1111111111 111111111 222222222222222 1111 1111 1 11111111 44444444444444444444 1
lowQualScore : 3 3333 7 4444444444 3 0 555 555 44 3 666666666 3 55 0 3 44 6666 000000000000000 7777 3 0 4444 55 5 3 666 7777 0 0 4 1 2 22 0 3333 3 2 5 5 5 5 88888888 66 888 00000000000000000000 0 0 66 66 5 5 888 666 5
lowQualScore : . .... . .......... . . ... ... .. . ......... . .. . . .. .... ............... .... . . .... .. . . ... .... . . . . . .. . .... . . . . . . ........ .. ... .................... . . .. .. . . ... ... .
lowQualScore : 3 4444 2 6666666666 6 4 888 444 22 1 555555555 1 11 8 1 22 1111 555555555555555 7777 6 6 1111 00 7 6 444 7777 1 2 5 2 2 55 2 7777 2 5 0 0 0 0 11111111 99 888 66666666666666666666 0 1 99 44 0 0 888 111 7
consensus : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGT---TTTA---TA--T-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAAAA-TCCA--TTCACTAGTTC----ATTAGTAATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAATGAATGGATTTTCATTCTG-TT-TTCGCCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTNTTATGATATATAAAACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAACT-T-TT-TTGCCGAGTG
Reference ( family-3414 ) : ACACTCGGCAAA-A-AAAGTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTTCATACGGATATGT---TTTA---TA--T-ATCATAATAAACAA-AATA-TC-AAACTTAACAAATAGGCGAAAACAGAATGAAAA-TCCA--TTCACTAGTTC----ATTAGTAATCCATTATCAAAGTAGACAG--------G------GGT----CACCA-GTCAAAAAT----GGCCAAAA--TACAGTATTTCTGTCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGTCAA----TTATTGTATTCACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTATACATGTGCATAAGATTACTAATGAACTAGTGAATGGATTTTCATTCTG-TT-T-CGCCTG-TTTGTTAAGT--------TTG--AA---TTAT--------------------TGTTTATTATGATATATAAAACATATCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAGAACT-T-TT-TTGCCGAGTG
gi|1 : ACACTCGGCAAA-A--AAGTTCTGCACACTTGTGATATTTGGTTTATAAAATGTTTATAAAATGAAAACTATATAACGTACGGATATGT---TTTA---TA--T-ATCTTGATAAAAAC-AATT-TC-AAACCTAACAAATAGGCGAAAACAGAATG-AAA-TCCA--TTCACTAGTTC----ATTAGTAATCAATTATCAAAGTAGACAA--------G------GGC----CACCA-GTCAAAAAT----AGT---------CAGTATTTCTTTCAATAACGTGTGTATCCACCCAGGTGT-TGTTGAA---TTGGCAA----TTATTGTATTCACCAGTATTTTAGCCATTTTTGACCGATGCCCCTTGTACACATGTGCATAAACTGACTAATGAACTAATGAATGGGTTTTCATCCTGTTT-T-CGCCTG-TTTGTTAAGT--------TTG--AA---GTAT--------------------TGTTTGTTATACTATTTAAAAC
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACTCGGTAAA-A-TAAGTTCTTCATACTTGGAATATTTGG----------GTT-ATAAAAT--AAACTGTATTTTATACAGATATGC---GTTA---TA--T-ATCA----AAACAA-A-----C-AA-CTGAACAAATATGCGAAATCAAAATTAAAA-CCCA--TTCACTGGTTC----ATTAATA-----TTATCAAAGTAAACAT--------T------TGT----TTCCA-GTCAAAATA----GGTAAAAA--TACGGTATTTTTGTCAATAATGTGTGTCTCCACT----------TTGAA---TTCTCAA----TTATTGTATTCACGTGTATTGTAGCC-----------ATGATCTCTGTTTACATATACACAAGATAACTA
gi|11 : TGAAAACTGTACTTCATATGGATATGT---TTTAAATTA--T-ATAATAATAAATAA-AA--------A-TTAACAAACAGTCGGAAACAGAATGAAAA-TCCA--TTCACTAGTCC----ATTAGTTATCCGTTATCAAAGTAGACAG--------G------GGT----CACCAGGCCAAAAAT----GGCCAAAA--TACA-TGTTTCTGTCAATAACGGGTGTATCCACCTTGGTGT-TATTGAA---TTGTTAA----TTATAGTATTCACCTGTATTTTACTCAATTTTa
gi|12 : TTCTG-TT-T-TTATTGATTTTTTACGT--------TTG--AA---TTAT--------------------TGTTTTATATGATATAC-AAGC-TGTTTATTTGAGTAATATAAGTTTTCA-TTTATAGCTCCAATA-CAT-GAAG---CATGCAGAGCT-T-CTGTTGTGGGGT
gi|13 : cttatATACTCGACAAA-A-AGGGTTCTGCACAATTTGG-TATT-GG----------ATT-ATAAAG-GAAAACTGTTTTTCATACGGATATAT---TTTA---TA--T-ATCATGATAAA-AA-TATT-TC-AACATAAACAATTAGGCGAAAACAGAATGAAAA-TCCA--TTCACTAGTTC----Aaataggcccacacaaacaaaatggtaatgtcaaagaatttcagtcagtaatattgtttttagtttgatgagcaaaaacactttgctatacgttttct
gi|14 : ttaatgttaactttaaacgtgtgacaacattacacactgaattacttatcaatgctcgataaaaatATGAACTAATTGATGGATTTCAATTCTC-TT-TTCGCCTG-TTTGTTAAGT--------GTG--AA---TTAT--------------------TGTTTATTATGATATATAAAACATATCCGTATGA--AATAC-ATTTTTCATTTTATAACCCAAATA-CCCTCAAGTCATATGC----TT-T-TT-TTGCatc
gi|15 : cttggtgtatttggggttctATACTCGGC-AG-A-AAAGTT----AAAC--------TTTGC----------ATT-ATCAAGTGAAAACTGTATTTCATATGGATATGTCTATCCA---TGCTT-ATCCGACTAAGC-A-AATA--C-AA--TT-----GTAGGCCGATACAGAATAAATA-TCCA--TTCACTAGTTC----ATGAGTATTCTATTATCAGAGaggttctgttgaaga
gi|16 : CACACGGCAAA-A-A--GTTCTGCACACTT-----ATTTGA----------GTT-ACGAATTGGAAA-TA-ATTTCATACGGATATGT---TTTA---TG--T-ATGATAATAAAC-A-AATATTC-AAACTTAAAAAATAGGCAAAAAGA-AATGAAAA-TCCA--TTCTCTAGTTC----A
gi|17 : GTATAA--CACAC-AGTTTTCATTTTATAACCAAAAT-------AAG---TGTGCAGAACT-T-AG-TTGCGGAGT
gi|18 : ACACTCGGCAAGGA-AAAGTTCTGCACACATGGACCTTTTGG----------GTT-ATAAAATa
gi|19 : ACTCGGCAAA-AGAAAGTTCTGCA-ACTTGGTGTATTTGG----------G
gi|2 : ATATTCGGCAAT-A-AAAGTTCTGCACACTTGGG-------------------TT-ATAAAATGAAAACTTTATTTCTTACGGATATAT---TTTA---TA--T-ACCATAATAAACAA-AATAATC-AAACTTAACAAATAGGTGAAAACAGAATGAAAA-----------CTACTTC----ATTAGTAATTCACTAACAAAGTAGACAG--------G------GGT----CACCA-ATCAAAAAT----GGCCTAAG--TACATTATTTTTATCAAGAATGTCTGTTTCCACCTTGGTGTGCA--AAACACTTGGCTA-----TATTTTAT--ACCTGTATTTTAGCCATTTTTGACCGATGACCCCTGTGTACATGTGCATAAGATTACTAATGAATTAATGAATAGATTTTCATTCTG-TT-T-CGCATG-TTTGTTAAAT--------TTG--AAATTTCAT--------------------T-TTT-TTATGATATATAAAACATATCCGTAAGC--AATAC-GGTTTTCATTTTATAACGCTAATACCCC-CAAG---TGAGCAGAACG-T-TT-TTGCCGAGTGa
gi|3 : ATACTGATGTGT---TTTA---TA--C-ATCATAGTAAACAATAAT--TC-AAATATTACAAGTGGTCGAAAATAGAATGAAAA-TCCA--TTCACAAGTTT----ATTACTAATTCATTATCATATTAGAGAG--------T------GGA----CTGCG-ATCAAAAGTTCGTGGCCAACA--TACAGTATTTCTGTCAATAATGTGTGTATCTATCTTGTTGT-TATCAAA---TTGTCAA----TTTTTGAATTCATCTGTATTTGAGCCAGTTTTGACCGATGA----TTTTTACATATGTAAAAGTTTACAAATGAAC-----AA---ATTTT-ATTCTC-TT-TTCGCCTG-TTTGTTAAGT--------TTC--AA---TTAT--------------------TATCTATTATGATATGTAAAGCATATCCGTTTAA--AATAA-AGTTTTCATTTTATACCCCAAATA-CCC-CAAG---TGTGCAGAACT-A-TT-TTG
gi|4 : tttggttcaaaatattttcaaaatcgtaggaacggtgatgtttagctgcatatgaatat---TA--T-AACATAGTAAACGA---TA-TCCAAACTTAACAAAAAGGCGAAAAGAGAATGAAGA-TTGAAATTCA---ATTC----ATTAGTAATCCATTATCAAAGTAGA-AGTAAAAATTGTATTTTGGTGACCCACCA-GTCAAAACT----TGCCAAAA--TACAATTTTTCTGTCTATAATGTGTGCGTCCACTTTGGTGT-TATTGAA---ATGTCAA----TTATTA-------------------CATTTTTGACCGATAACA--TTCATGCATGTGCATAAAATTACAAATGAACTACTGACTGGATTTTCATTCTG-TTAT-CGCCTG-TTTGTTAAGTTTGAATTATTGTTAA---TTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCACCCGTATGA--AATAC-AGTTTTCATTTTATAACCCAAATA-CCC-CAAG---TGTGCAAAACCGT-TT-TTGCCG
gi|5 : -TT-T-CGCCTG-TTTGTTAAGT--------TTG--AA---TCAT--------------------TGTTTTTTATGATATATAAAACATATCTGTATGG--AATAC-AG-TTTCATATTATAACTTAAATA-CCC-CACG---TGTGTAGA
gi|5 : CTCGGCAAA-A-CAAGTTCTTCCCACTCGAGGTATTTGG----------GTT-ATACAAAGAAAACTGTATTTTATAAGTATTTGA---TTTA---TA--T-ATAGTAATAAACAA-AAAT-TC-AAACCCAAGGAA-AGAC-AAAAC--------AA-TTCA--TTCACTAGTTCATTTATTAATAATCCATTATTAAAGTAGACAT--------G------GTT----CACCA-G---AAAATAAA-GGTCAAAA--TACAATA-TTCTGGCAATAATATGTATATCCACATTGGTGT-TATTGAA---TTGTTGAAACCTTGATGTTTTCGCCTGTTTGTTAacatcaaggtttcaacaattcaataacaccaatgtggatatacatattattgccagaatattgtattttgacctttattttctggtgaaccatgtctactttaataatggattattaataaatgaactagtgaatgaattgttttgtctttccttgggtttgaatttttgtttattactatatataaatcaaatacttataaaatacagttttctttgtataacccaaatacctcgagtgggaagaacttgttttgccgag
gi|6 : tctacacacgtggggtatttaagttataatatgaaactgtattccatacagatatgttttatatatcataaaaaacaatgattcaaactACTCGGCAAA-A-AC-GTTCTGCACACTTGGGGTATTTGG----------GTT-ATAAAATGAAAACTGTATTGCATACCGATCTGT---GTAA---TA--TTATTATTACGAACAA-AACA-TC-AATCTTAACAAATAGGTGAAACCAGAATGAACA-TCCA--TTCACTAGTTC----ATTAGTAATCCATTATCAACATAGACAT--------G------GGT----TGCCA-GTCAAAAAT----GACCAAAA--TTCA-TATTACTTCCAATAATGTGTGTATCCACCTTGGTGT-TATTGAA---TTGCCAA----TTATTGTATTTACCTGTA-TTTAGCCATTTTTGACCAA
gi|7 : gcataagtaaccatacgccttACACT--ACACA-A-AATATTATGAACGCTTGAGGTATTTGG----------GAT-ATAAAATA-------TATTTCATACGAATATGA---TTTA---TA--T-ATCATAA---------AGA-TC-AAACTTA-----TAGGAGAAAACA-AATGAAAAATCCA--TTCACTTGTTC----ATTAGTAATTTATTAACAAAGTAGGCAG--------G------AGA----GACCA-GTTAAAAGT----GGGCAAAA--TACAGTCTTT-TGTCAAAAGTGTGTGTATCCACCATGGTGT-TATTGAA----TGTCAG----TTATTGTATTAACCTGTATTTTAGCCATTTTAGACAGATGACTACTGTATACATGTTCATCAAATTACTAATGa
gi|8 : CACTCGACAAA-A-ACAGTTATGCACACTTGGGGTGTTTGG----------GGT-ATAAAATGGAAACTGTATTTATTACGGATATGT---TTTA---TA--T-ATCATAATAAAC---AAT---------------AATAGGCG--AACAGA--GAAAA-TACA--TTCAAAAGTT-----ATTAGTAATCCGTTACC-AAGTAGACAA--------T------TAT----CACCA-GTCAGAATT----GGTCAAAA--TACAATATTTCTGTCCAAAATGTGTGTTTCCGCCTTGGTGT-TAATGGA---TTTTCAA----TTATTGTAGCCGCCTGTATTTAAGTCATTTTTGACCGAAAACCCCTGTATACTTATGCATCGGATT
gi|9 : GTTC----AGTAGTAATCCATTATCAAAGTTGACAG--------G------GGT----CACCT-GT-AAAAAT----GGCAAAAAAATATAGCATTTCTGTCAATAAAGTGCAAATCCACCTTGATGT-TATTGAA---TTGTCAA----TTATTGTATTCACTTGTATTTAAGCCATTTTTGATCGATGATCCCCGTGTATAT----ATAA-----CT---GAA-----GAAGGGATTTTCATTCTG-TT-TTCGCCTG-TTTGT---------------G--AG---TCA----------------------GTTTTTT----TATATACAACATGCCCGTAAGA--AATA---GCTTTTATTTATTAACCCAAATA-CCC-CAAT---TGTGCAGAATT-TGTT-TTGCCGA