lowQualScore : 222222222222222222222222222222222222222222222222222222
lowQualScore : 1 111 111 11 1 1111111 11 11111 22222222222222222 11111111 11 11 111 111111 1 111111111111111111111111111111111111111111111111111111 44444
lowQualScore : 1 6 5 3 44 000 55 888 44 2 5 5 11 3 4444444 55 4 00 11111 0 8888 8 33333333333333333 22222222 999999 44 4 7 3 4 77 111 4 3 9 4 111111 3 777 1 1 5 5 5 66 6 777777777777777777777777777777777777777777777777777777 2 33333 6 6
lowQualScore : . . . . .. ... .. ... .. . . . .. . ....... .. . .. ..... . .... . ................. ........ ...... .. . . . . .. ... . . . . ...... . ... . . . . . .. . ...................................................... . ..... . .
lowQualScore : 2 3 7 1 66 444 55 666 66 5 0 0 00 8 4444444 55 0 99 44444 8 5555 2 33333333333333333 11111111 666666 00 0 8 5 0 00 777 0 2 4 0 555555 4 000 8 9 3 5 0 99 7 888888888888888888888888888888888888888888888888888888 5 00000 0 0
consensus : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CA--TAGAGAGACNCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGT-CAACCTCTG-------CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATAT--AAGAG-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAATGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAG---GATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--TTAACA-TGCNATTGCTGCATTGTGT-TGGANATACGNATNAAGCTATCNATACTTNTCAANATATGCAGGTCATATATGTTTTT
Reference ( gi|2 ) : AGGTGTCATCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CA--AAGAGAAACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGC-CAACCACTG-------CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATAT--AAGAG-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-ACATTCAAAT--AAA-AAAATGAGCATTGAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAATGAG---GATTATTTAAAACCGCCATTATGCGACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--TTAACA-TGTTGTCGC-GCATTTTTTCTGAAAATATA-ATGA-------AATACTTT---AGATATACAGTTTA-ATATATCTTTGA
gi|5 : AGGTATCATCCCACCATTGATT-TTTGTTATTTATTCTT-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CA--TAGAGAAACCCAAATGAAAAAAGTGA-A-ACCTACATTCTACTGTTTGT-CAACCTCTG-------CACTATCAAAAAATGATGAGAAAAGTAGGGGTCATGTGTCATAT--AAGAG-ATTTT------TTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAACGTAGACTTCCGAA-----------------AGCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTCTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAATGAGCATTAAAATAA-GGAAAATGCA-TTTTAA------AGAAGAAGAAATGAG---GATTATTTAAAACCGCCATTATGCAACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T
gi|1 : aAGGTGTAACCCTACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CA--TAGAGAGTCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGT-CAACCTCAG-------CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATAT--AAGAG-ATTTT----TTTT-CTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GAA------TTCATACCCCAATTTCAAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGAAAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-ACAATGAGCATTAAAATAT-GGAAAATGCATTTTTAA------AGAAGAGGAATTGAG---GATTATTTATAACCGCCATTATGCGACTATCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGCC--TGAA-A-GGCTAT-GCTACATTGTGT-TGGATATATGTATGA-------CA---TTG---ATATATACAG
gi|4 : AGGTGTAACCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CA--TAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGT-CAACCTCTG-------CACTATCAAAATATGATGAGAAAAATAGGAGTCATGTGTCATAT--AAAAGTGTTTT----TTTTTCTGCTCAGTGTGTACA----GTGTTAACAAAGTTAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACACCAATTTCCAAGCATCAATTATTTTTTTCTAAA-TTCAAAATTCAAACATGACATTGCCATCAAAATG-TTCAATATACATCAATAATG-ACATTCAAAT--AAA-AAAG-GAGTATTAAAATCT-GGAAAAT-CATTTTTAA------AGAAGAAGAAACGAG---GATTATTTATAA-----------CGACTGCACCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGCCTATTAGCA-Tactcgtctcagacctttatagac
gi|8 : aAGGTGTAAACCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CA--TAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGT-CAACCTCTG-------CACTATCGAAATATGATGAGAAAAGTAGGAGTCATGTGTCATAT--AAGAG-A--TT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACATCCGAA-----------------ATCAT--------GTA------ATCATACCCCAATTTCCAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCACAATG-TTCAAAATACATCAAAAATA-TCATTCAAATAAAAA-AAAATGAGCATTAAAATAA-GAAAAATTCATTTTTAA------AGAAGAAGAAATGAG---GATTATTTATAACCGC-------------------------ACTTCCTTTTTGCAATGGTGGTACTATGCC--Ttatgcttatgtttaaatgcataaa
gi|7 : AGGTGTAAACCCGCCATTGAGTGTTTGTTATTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAAGATTTTCAAT--CA--TAGAGAGACCCAAATGAAAGAAGTGA-G-ACTTACATTTTACTGTTTGT-CAACCTCTG-------CACTACCAAAATAT-ATGAGAAAAGTAGAGGCCATGTGTCGTAT--AAGAG-ATTTT----TTT--CTACTCAGTGTGCACA----CTGTTGACAAAGT-AAAGCAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTT-TTTTTCTAAA-TTGACAATTCAAACATGACAACGCTTTCAAAATGATTCAAAATACACCAATAATG-CCATTCAAAT---AA-AAAATGAGCATTAGAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAT---GATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCT--------------CACTATGCC--TTAA
gi|3 : aAGGTGTAACCCCACCATTGATTGTTTGTTCTGTATTATT-TAGTAAAT--AA---TAAAAGTACCAAGTCTTGTCATT--CA--TAGAAAAACACAA-TGAAAGAAGTGA-A-ACTTACATTTTACTGTTTGT-CAGCCTCTG-------CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAAAAAG-A---------ATTCCTGTTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATTCGCCAATCTCCGAGCATCA----TTTTTTTCTAAA-TACACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCTAATAAAAA-AAAATAAGCATTAAAACAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAG---GAGTATTTATAACCGCCATTATGCGACTACATCACGGAAGCATTTC-------CAATGGTGATACTATGCC--ATAACAGTATAATTGC-GT-----------AGATACAGATTAAGCTATCAATACTTTTCAAGATATGCAAGTCATATATGTTTTT
gi|21 : aAGGTGTATTCCCACCATTGATT-TGTGTTCTTTAATCTA-TAGTA
gi|14 : gAGGTGTCAGACCACCATTGACT-TTCCTTC-ATATTTCATTAGTGAATGCAACTTT-----TTTAAAGGCTTATAATTGACA--GAAAGAGACACA
gi|23 : AGGTGTAACCCCACCATTGGTT-TTATTTCTTTATTCTcac
gi|17 : AGGTGCAAGTCCACCATTGATT-TTTTTTATTATTTCTA-TAGTGTAC--AA----AACATTTTCAAAG
gi|9 : gttgttatGATGTAATCCCATCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTAGAAGGCTTGTCATT--CA--CAGAGAGACACAAATGAAAGAAGTGA-A-ACTTACATTTTACTGTTTAT-CAACATCTG-------CAATATCAAAATATGATGAGAAAAGCAGGGGTCATGTGTCATAT--AAGAG-A--TT----TTTTTCTGCTCAATGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCA---TTTTATTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTTAATT--AAA-AAA--GAGCATTAAAATAA-GGAAAATGCCTTTTTAA------AGAAGAAGAAACGAG---GATTATTTATAACCGCCg
gi|6 : GGTGTAAGCCCACCATTGATT-TTCTTTCTGAATTCTA-TCGTGATT--GA---AACATGTTTAAAGGCTTGTCATT--CATTAAAAGA--CACAAACCAAGGA--TGATATACATACATTTTATTGTCTATTCA--CATTGTGGCAAACAGTGGCAAAAT-TCATTAGAAAAATACGGGTCATGTTTCATCC--AAGAG-TTTTTGTTTTTTTTCTGTTCAGTGTGTACA----CTGTTGCCAAAGTGAAAATAGACGTCAGAA-----------------GTCAT--------GTA------TACCTATCCCAATTTCCAAGCATCAATTTGTTTTT--TAAA-TTCACAATTCAAACAGTA-AA-------AAAATG-TTAAAAATACACCAATCATG-TCATTC-AAT--CAC-GAAATTAGCACTAAAATAA-AGAAAAAGCATTTCTAA------ATAAGAAGAAACAAT---GATTATTTATCACCGCCATTATGCCACTATTCCGCGGAGCCATTTCCTGTTTCCAATATATGTGTTATGC
gi|18 : GGTGTAACCCCAACATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGC--GTCAat
gi|15 : tATTATTT-TTTGTTCTTTATTCTA-TATTAACT--AAAC-TGAA--TTTGCATACTTGTCATT--CA--TAGAGAGACACTAATGAA
gi|10 : attaTG-------CAGTTTGAACATACCATTATAATATTAGAGATCAGATTTCATCC--AAATG-ACATT----AGTTTCCGTTCAATGTGTACATACACCACTGACAAAGTGAAAGCAGGCTTCCAAAACAATAAAAGTATACCGATCATTTTGGTTGGT-------TTTATACTCCCATTTTCATGCAT-GATTT--------TAAA-TTTAAAAATTAAACATGATAGTATT-TCTACTTG-GTCCATATCGATCAATTATATCCATTCAAAT--CACTAAAAT----ACT--AATAACACAAAATCCAACATTAAACCACGAAAAAAAGAAA-GAGAAAAACAATTTAAA
gi|20 : aacctctggcattATGATGAGAAAAGTAGGGGTCATGTATCTTCT--AAGAA-A
gi|11 : aaGTGTGTTCA----CTGTTGACAAAGTGAAAGTAGACTTCTGAA-----------------AGCAT--------GTAAATCTATACATACCCCAATTTCCAAGCATC-----TTTTTTTGTAAAATTCACAACTAAAACATGACAATGCTTTCAAAATG-TTCAAAACACATTATTATTG-CCATTCAAAT--ATA-AAAA-GAGCATTAAAATAA-GGAAAATGTATTTCTAA------AAAAGAAGAAATAAG---GATTATTTATAACCACCATTATGTGATTACCCCACGAAAGCATTTCCTGTTTCCAAAGATGGTATTGTaatttct
gi|19 : TGTTGACAAAGTGAAAGTAGACTTCAGAA-----------------ATCAT--------ATA------TTCATACTCACATTTCCGAGCATCA
gi|16 : TTCAGAA-----------------ATCAT--------GTA------TTAATTCACCAATTTCCAAGAATCAA
gi|12 : aaagtcaaagcaaactattatattttattCTATTATGCGACTACTCCACGGAAGCAATTCCTTTTTCTAATGGT--TACTATGCC--T
gi|22 : cAAGCATTTCCTGTTTGCAACAGTGGTACTACGCC--Tccaccaagcaatacttcgagcgtgatttggttaatttgtaagaccctggcgtctgtttcacaaacatttttaagggaatttatcaggatttttttaatcttttaatt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AATGTAAGCCAATCATTAATTATCATTCTTATTGTTATAGTGAATGAAACATAATTAAATGATTGCCATTCTAAGTAAGACACAAATCACAGAT
Alignments
lowQualScore : 11111 11111 22222222222222222 11111111 11 111111 44444444444444 111 3333333 2222 1
lowQualScore : 1 5 2 44 999 55 1 4 4 4 00000 55 3 4 11111 0 7777 0 11111111111111111 11111111 888888 11 3 2 3 3 55 3 777 3 000000 1 0 1 4 2 66 4 99 1 3 00000000000000 1 333 1 7777777 2222 1 2 5
lowQualScore : . . . .. ... .. . . . . ..... .. . . ..... . .... . ................. ........ ...... .. . . . . .. . ... . ...... . . . . . .. . .. . . .............. . ... . ....... .... . . .
lowQualScore : 0 3 9 22 666 00 0 4 4 0 00000 00 6 9 99999 7 7777 2 55555555555555555 22222222 888888 22 6 4 6 6 00 6 111 6 555555 8 7 2 2 3 11 4 00 0 2 33333333333333 0 777 0 0000000 0000 0 5 5
consensus : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-TGT-TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
Reference ( family-3058 ) : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CATAGAGAGACNCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATTGCTGCATTGTGT-TGGANATACGNATNAAGCTATCNATACTTNTCAANATATGCAGGTCATATATGTTTTT
gi|1 : AGGTGTAACCCTACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CATAGAGAGTCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-AG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTT-CTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GAA------TTCATACCCCAATTTCAAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGAAAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-ACAA--TGAGCATTAAAATAT-GGAAAATGCATTTTTAA------AGAAGAGGAATTGAGGATTATTTATAACCGCCATTATGCGACTATCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGCC--T-GAA-A-GGCTA-TGCTACATTGTGT-TGGATATATGTATGA
gi|10 : TT-TG-----CAGTTTGAACATACCATTATAATATTAGAGATCAGATTTCATCCAAAT--G-ACATT----AGTTTCCGTTCAATGTGTACATACACCACTGACAAAGTGAAAGCAGGCTTCCAAAACAATAAAAGTATACCGATCATTTTGGTTGGT-------TTTATACTCCCATTTTCATGCAT-GATTT--------TAAA-TTTAAAAATTAAACATGATAGTATT-TCTACTTG-GTCCATATCGATCAATTATATCCATTCAAAT--CACTAAAA--T----ACT--AATAACACAAAATCCAACATTAAACCACGAAAAAAAGAAA-GAGAAcattgatatatacagactcgtctcagacctttatagac
gi|11 : aacctctggcaGTGTGTTCA----CTGTTGACAAAGTGAAAGTAGACTTCTGAA-----------------AGCAT--------GTAAATCTATACATACCCCAATTTCCAAGCATC-----TTTTTTTGTAAAATTCACAACTAAAACATGACAATGCTTTCAAAATG-TTCAAAACACATTATTATTG-CCATTCAAAT--ATA-AAAA---GAGCATTAAAATAA-GGAAAATGTATTTCTAA------AAAAGAAGAAATAAGGATTATTTATAACCACCATTATGTGATTACCCCACGAAAGCATTTCCTGTTTCCAAAGATGGTATTGTaaacaatttaaa
gi|12 : CTATTATGCGACTACTCCACGGAAGCAATTCCTTTTTCTAATGGT--TACTATGCC--TCCACCA-AGCAAT
gi|14 : cAGGTGTCAGACCACCATTGACT-TTCCTTC-ATATTTCATTAGTGAATGCAACTTT-----TTTAAAGGCTTATAATTGACAGAAAGAGACACAacttcgagcgtgatttggttaatttgtaagaccctggcgtctgtttcacaaacatttttaagggaatttatcaggatttttttaatcttttaatt
gi|15 : ATTATTT-TTTGTTCTTTATTCTA-TATTAACT--AAAC-TGAA--TTTGCATACTTGTCATT--CATAGAGAGACACTAATGAAcac
gi|16 : attaTTCAGAA-----------------ATCAT--------GTA------TTAATTCACCAATTTCCAAGAATCAA
gi|17 : aaagtcaaagcaaactattatattttattAGGTGCAAGTCCACCATTGATT-TTTTTTATTATTTCTA-TAGTGTAC--AA----AACATTTTCAAAG
gi|18 : gttgttatGGTGTAACCCCAACATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGC--GTCAg
gi|19 : tTGTTGACAAAGTGAAAGTAGACTTCAGAA-----------------ATCAT--------ATA------TTCATACTCACATTTCCGAGCATCA
gi|2 : AGGTGTCATCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CAAAGAGAAACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGCCAACCAC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-ACATTCAAAT--AAA-AAAA--TGAGCATTGAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCGACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-TAACA-TGTTGTCGC-GCATTTTTTCTGAAAATAT-AATGAA-------ATACTTT---AGATATACAGTTTA-ATATATCTTT
gi|20 : ATGATGAGAAAAGTAGGGGTCATGTATCTTCTAAGA--A-Aga
gi|21 : aaAGGTGTATTCCCACCATTGATT-TGTGTTCTTTAATCTA-TAGTAaatttct
gi|22 : gAAGCATTTCCTGTTTGCAACAGTGGTACTACGCC--T-
gi|23 : AGGTGTAACCCCACCATTGGTT-TTATTTCTTTATTCTattat
gi|3 : AGGTGTAACCCCACCATTGATTGTTTGTTCTGTATTATT-TAGTAAAT--AA---TAAAAGTACCAAGTCTTGTCATT--CATAGAAAAACACAA-TGAAAGAAGTGA-A-ACTTACATTTTACTGTTTGTCAGCCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAAAAAG-AATTC---------CTGTTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATTCGCCAATCTCCGAGCATCA----TTTTTTTCTAAA-TACACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCTAAT--AAA-AAAAAATAAGCATTAAAACAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAGGAGTATTTATAACCGCCATTATGCGACTACATCACGGAAGCA-------TTTCCAATGGTGATACTATGCC--A-TAACAGTATAATTGC--------GT----AGATACAGATTAAGCTATCAATACTTTTCAAGATATGCAAGTCATATATGTTTTT
gi|4 : aAGGTGTAACCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAATAGGAGTCATGTGTCATATAAAA--GTGTTTT----TTTTTCTGCTCAGTGTGTACA----GTGTTAACAAAGTTAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACACCAATTTCCAAGCATCAATTATTTTTTTCTAAA-TTCAAAATTCAAACATGACATTGCCATCAAAATG-TTCAATATACATCAATAATG-ACATTCAAAT--AAA-AAAG---GAGTATTAAAATCT-GGAAAAT-CATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAA-----------CGACTGCACCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGCCTAT-TAGCA-T
gi|5 : aAGGTATCATCCCACCATTGATT-TTTGTTATTTATTCTT-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CATAGAGAAACCCAAATGAAAAAAGTGA-A-ACCTACATTCTACTGTTTGTCAACCTC-TG-----CACTATCAAAAAATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT------TTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAACGTAGACTTCCGAA-----------------AGCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTCTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCA-TTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCAACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-tatgcttatgtttaaatgcataaa
gi|6 : aGGTGTAAGCCCACCATTGATT-TTCTTTCTGAATTCTA-TCGTGATT--GA---AACATGTTTAAAGGCTTGTCATT--CATTAAAAGACACAAACCAAGGA--TGATATACATACATTTTATTGTCTATTCACATTGTGGCAAACAGTGGCAAAAT-TCATTAGAAAAATACGGGTCATGTTTCATCCAAGA--G-TTTTTGTTTTTTTTCTGTTCAGTGTGTACA----CTGTTGCCAAAGTGAAAATAGACGTCAGAA-----------------GTCAT--------GTA------TACCTATCCCAATTTCCAAGCATCAATTTGTTTTT--TAAA-TTCACAATTCAAACAGTA-AA-------AAAATG-TTAAAAATACACCAATCATG-TCATTC-AAT--CAC-GAAA--TTAGCACTAAAATAA-AGAAAAAGCATTTCTAA------ATAAGAAGAAACAATGATTATTTATCACCGCCATTATGCCACTATTCCGCGGAGCCATTTCCTGTTTCCAATATATGTGTTATGC
gi|7 : AGGTGTAAACCCGCCATTGAGTGTTTGTTATTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAAGATTTTCAAT--CATAGAGAGACCCAAATGAAAGAAGTGA-G-ACTTACATTTTACTGTTTGTCAACCTC-TG-----CACTACCAAAATAT-ATGAGAAAAGTAGAGGCCATGTGTCGTATAAGA--G-ATTTT----TTT--CTACTCAGTGTGCACA----CTGTTGACAAAGT-AAAGCAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTT-TTTTTCTAAA-TTGACAATTCAAACATGACAACGCTTTCAAAATGATTCAAAATACACCAATAATG-CCATTCAAAT---AA-AAAA--TGAGCATTAGAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAATGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCT--------------CACTATGCC--T-TAAat
gi|8 : aAGGTGTAAACCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATT--CATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCGAAATATGATGAGAAAAGTAGGAGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACATCCGAA-----------------ATCAT--------GTA------ATCATACCCCAATTTCCAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCACAATG-TTCAAAATACATCAAAAATA-TCATTCAAATAAAAA-AAAA--TGAGCATTAAAATAA-GAAAAATTCATTTTTAA------AGAAGAAGAAATGAGGATTATTTATAACC-------------------------GCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-
gi|9 : GATGTAATCCCATCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTAGAAGGCTTGTCATT--CACAGAGAGACACAAATGAAAGAAGTGA-A-ACTTACATTTTACTGTTTATCAACATC-TG-----CAATATCAAAATATGATGAGAAAAGCAGGGGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAATGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCA---TTTTATTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTTAATT--AAA-AAA----GAGCATTAAAATAA-GGAAAATGCCTTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGTAAGCCAATCATTAATTATCATTCTTATTGTTATAGTGAATGAAACATAATTAAATGATTGCCATTCTAAGTAAGACACAAATCACAGAT
Alignments
lowQualScore : 11111 11111 22222222222222222 11111111 11 111111 1 444444444444444 111 3333333 222 1
lowQualScore : 1 5 2 2 77 888 1 4 4 4 00000 55 3 4 11111 0 7777 0 11111111111111111 11111111 888888 11 3 2 3 3 55 3 777 3 000000 1 0 1 4 2 66 4 99 1 2 666666666666666 1 333 2222222 111 1 5
lowQualScore : . . . . .. ... . . . . ..... .. . . ..... . .... . ................. ........ ...... .. . . . . .. . ... . ...... . . . . . .. . .. . . ............... . ... ....... ... . .
lowQualScore : 0 0 5 7 99 999 4 4 4 0 00000 00 6 9 99999 7 7777 2 55555555555555555 22222222 888888 22 6 4 6 6 00 6 111 6 555555 8 7 2 2 3 11 4 00 0 0 777777777777777 0 777 0000000 000 0 5
consensus : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T--TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
Reference ( family-3058 ) : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-TGT--TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
gi|1 : AGGTGTAACCCTACCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGTCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-AG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTT-CTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GAA------TTCATACCCCAATTTCAAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGAAAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-ACAA--TGAGCATTAAAATAT-GGAAAATGCATTTTTAA------AGAAGAGGAATTGAGGATTATTTATAACCGCCATTATGCGACTATCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGCC--T-GAA-A-GGCTAT-GCTACATTGTGT--TGGATATATGTATGA
gi|10 : TT-TG-----CAGTTTGAACATACCATTATAATATTAGAGATCAGATTTCATCCAAAT--G-ACATT----AGTTTCCGTTCAATGTGTACATACACCACTGACAAAGTGAAAGCAGGCTTCCAAAACAATAAAAGTATACCGATCATTTTGGTTGGT-------TTTATACTCCCATTTTCATGCAT-GATTT--------TAAA-TTTAAAAATTAAACATGATAGTATT-TCTACTTG-GTCCATATCGATCAATTATATCCATTCAAAT--CACTAAAA--T----ACT--AATAACACAAAATCCAACATTAAACCACGAAAAAAAGAAA-GAGAAcattgatatatacagactcgtctcagacctttatagac
gi|11 : aacctctggcaGTGTGTTCA----CTGTTGACAAAGTGAAAGTAGACTTCTGAA-----------------AGCAT--------GTAAATCTATACATACCCCAATTTCCAAGCATC-----TTTTTTTGTAAAATTCACAACTAAAACATGACAATGCTTTCAAAATG-TTCAAAACACATTATTATTG-CCATTCAAAT--ATA-AAAA---GAGCATTAAAATAA-GGAAAATGTATTTCTAA------AAAAGAAGAAATAAGGATTATTTATAACCACCATTATGTGATTACCCCACGAAAGCATTTCCTGTTTCCAAAGATGGTATTGTaaacaatttaaa
gi|12 : CTATTATGCGACTACTCCACGGAAGCAATTCCTTTTTCTAATGGT--TACTATGCC--TCCACCA-AGCAAT
gi|13 : cTGTAAGCCAATCATTAATT-ATCATTCTT-ATTGTTA-TAGTGAATGAAA---CATAA--TTAAATGATTGCCATTCTAAGTAAGACACAAATCACAGAacttcgagcgtgatttggttaatttgtaagaccctggcgtctgtttcacaaacatttttaagggaatttatcaggatttttttaatcttttaatt
gi|14 : aaAGGTGTCAGACCACCATTGACT-TTCCTTC-ATATT-TCATTAGTGAATGCAACTTT-----TTTAAAGGCTTATAATTGACAGAAAGAt
gi|15 : ATTATTT-TTTGTTCTTTATT-CTA-TATTAACT--AAAC-TGAA--TTTGCATACTTGTCATTCATAGAGAGACACTAATGAAgacacacac
gi|16 : attaTTCAGAA-----------------ATCAT--------GTA------TTAATTCACCAATTTCCAAGAATCAA
gi|17 : aaagtcaaagcaaactattatattttattAGGTGCAAGTCCACCATTGATT-TTTTTTATTATTT-CTA-TAGTGTAC--AA----AACATTTTCAAAG
gi|18 : gttgttatGGTGTAACCCCAACATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGC--GTCAg
gi|19 : tTGTTGACAAAGTGAAAGTAGACTTCAGAA-----------------ATCAT--------ATA------TTCATACTCACATTTCCGAGCATCA
gi|2 : AGGTGTCATCCCACCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCAAAGAGAAACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGCCAACCAC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-ACATTCAAAT--AAA-AAAA--TGAGCATTGAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCGACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-TAACA-TGTTGTCGC-GCATT-TTTTCTGAAAATAT-AATGA-------AATACTTT---AGATATACAGTTTA-ATATATCTTT
gi|20 : ATGATGAGAAAAGTAGGGGTCATGTATCTTCTAAGA--A-Aga
gi|21 : aaAGGTGTATTCCCACCATTGATT-TGTGTTCTTTAAT-CTA-TAGTAaatttct
gi|22 : gAAGCATTTCCTGTTTGCAACAGTGGTACTACGCC--T-
gi|23 : AGGTGTAACCCCACCATTGGTT-TTATTTCTTTATT-CTattat
gi|3 : AGGTGTAACCCCACCATTGATTGTTTGTTCTGTATT-ATT-TAGTAAAT--AA---TAAAAGTACCAAGTCTTGTCATTCATAGAAAAACACAA-TGAAAGAAGTGA-A-ACTTACATTTTACTGTTTGTCAGCCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAAAAAG-AATTC---------CTGTTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATTCGCCAATCTCCGAGCATCA----TTTTTTTCTAAA-TACACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCTAAT--AAA-AAAAAATAAGCATTAAAACAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAGGAGTATTTATAACCGCCATTATGCGACTACATCACGGAAGCA-------TTTCCAATGGTGATACTATGCC--A-TAACAGTATAATTGC-GT------------AGATACAGATTAAGCTATCAATACTTTTCAAGATATGCAAGTCATATATGTTTTT
gi|4 : aAGGTGTAACCCCACCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAATAGGAGTCATGTGTCATATAAAA--GTGTTTT----TTTTTCTGCTCAGTGTGTACA----GTGTTAACAAAGTTAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACACCAATTTCCAAGCATCAATTATTTTTTTCTAAA-TTCAAAATTCAAACATGACATTGCCATCAAAATG-TTCAATATACATCAATAATG-ACATTCAAAT--AAA-AAAG---GAGTATTAAAATCT-GGAAAAT-CATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAA-----------CGACTGCACCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGCCTAT-TAGCA-T
gi|5 : aAGGTATCATCCCACCATTGATT-TTTGTTATTTATT-CTT-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAAACCCAAATGAAAAAAGTGA-A-ACCTACATTCTACTGTTTGTCAACCTC-TG-----CACTATCAAAAAATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT------TTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAACGTAGACTTCCGAA-----------------AGCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTCTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCA-TTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCAACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-tatgcttatgtttaaatgcataaa
gi|6 : aGGTGTAAGCCCACCATTGATT-TTCTTTCTGAATT-CTA-TCGTGATT--GA---AACATGTTTAAAGGCTTGTCATTCATTAAAAGACACAAACCAAGGA--TGATATACATACATTTTATTGTCTATTCACATTGTGGCAAACAGTGGCAAAAT-TCATTAGAAAAATACGGGTCATGTTTCATCCAAGA--G-TTTTTGTTTTTTTTCTGTTCAGTGTGTACA----CTGTTGCCAAAGTGAAAATAGACGTCAGAA-----------------GTCAT--------GTA------TACCTATCCCAATTTCCAAGCATCAATTTGTTTTT--TAAA-TTCACAATTCAAACAGTA-AA-------AAAATG-TTAAAAATACACCAATCATG-TCATTC-AAT--CAC-GAAA--TTAGCACTAAAATAA-AGAAAAAGCATTTCTAA------ATAAGAAGAAACAATGATTATTTATCACCGCCATTATGCCACTATTCCGCGGAGCCATTTCCTGTTTCCAATATATGTGTTATGC
gi|7 : AGGTGTAAACCCGCCATTGAGTGTTTGTTATTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAAGATTTTCAATCATAGAGAGACCCAAATGAAAGAAGTGA-G-ACTTACATTTTACTGTTTGTCAACCTC-TG-----CACTACCAAAATAT-ATGAGAAAAGTAGAGGCCATGTGTCGTATAAGA--G-ATTTT----TTT--CTACTCAGTGTGCACA----CTGTTGACAAAGT-AAAGCAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTT-TTTTTCTAAA-TTGACAATTCAAACATGACAACGCTTTCAAAATGATTCAAAATACACCAATAATG-CCATTCAAAT---AA-AAAA--TGAGCATTAGAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAATGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCT--------------CACTATGCC--T-TAAat
gi|8 : aAGGTGTAAACCCACCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCGAAATATGATGAGAAAAGTAGGAGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACATCCGAA-----------------ATCAT--------GTA------ATCATACCCCAATTTCCAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCACAATG-TTCAAAATACATCAAAAATA-TCATTCAAATAAAAA-AAAA--TGAGCATTAAAATAA-GAAAAATTCATTTTTAA------AGAAGAAGAAATGAGGATTATTTATAACC-------------------------GCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-
gi|9 : GATGTAATCCCATCATTGATT-TTTGTTCTTTATT-CTA-TAGTAAAT--AA---TAAAAGTTAGAAGGCTTGTCATTCACAGAGAGACACAAATGAAAGAAGTGA-A-ACTTACATTTTACTGTTTATCAACATC-TG-----CAATATCAAAATATGATGAGAAAAGCAGGGGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAATGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCA---TTTTATTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTTAATT--AAA-AAA----GAGCATTAAAATAA-GGAAAATGCCTTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCC
Alignments
lowQualScore : 11111 11111 22222222222222222 11111111 11 111111 1 5555555555555555 111 3333333 222 1
lowQualScore : 1 5 2 44 999 4 4 4 00000 55 3 4 11111 0 7777 0 11111111111111111 11111111 888888 11 3 2 3 3 55 3 777 3 000000 1 0 1 4 2 66 4 99 1 2 8888888888888888 1 333 2222222 111 1 5
lowQualScore : . . . .. ... . . . ..... .. . . ..... . .... . ................. ........ ...... .. . . . . .. . ... . ...... . . . . . .. . .. . . ................ . ... ....... ... . .
lowQualScore : 0 3 9 22 666 4 4 0 00000 00 6 9 99999 7 7777 2 55555555555555555 22222222 888888 22 6 4 6 6 00 6 111 6 555555 8 7 2 2 3 11 4 00 0 0 3333333333333333 0 777 0000000 000 0 5
consensus : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
Reference ( family-3058 ) : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
gi|1 : AGGTGTAACCCTACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGTCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-AG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTT-CTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GAA------TTCATACCCCAATTTCAAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGAAAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-ACAA--TGAGCATTAAAATAT-GGAAAATGCATTTTTAA------AGAAGAGGAATTGAGGATTATTTATAACCGCCATTATGCGACTATCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGCC--T-GAA-A-GGCTAT-GCTACATTGTGT---TGGATATATGTATGA
gi|10 : TT-TG-----CAGTTTGAACATACCATTATAATATTAGAGATCAGATTTCATCCAAAT--G-ACATT----AGTTTCCGTTCAATGTGTACATACACCACTGACAAAGTGAAAGCAGGCTTCCAAAACAATAAAAGTATACCGATCATTTTGGTTGGT-------TTTATACTCCCATTTTCATGCAT-GATTT--------TAAA-TTTAAAAATTAAACATGATAGTATT-TCTACTTG-GTCCATATCGATCAATTATATCCATTCAAAT--CACTAAAA--T----ACT--AATAACACAAAATCCAACATTAAACCACGAAAAAAAGAAA-GAGAAcattgatatatacagactcgtctcagacctttatagac
gi|11 : aacctctggcaGTGTGTTCA----CTGTTGACAAAGTGAAAGTAGACTTCTGAA-----------------AGCAT--------GTAAATCTATACATACCCCAATTTCCAAGCATC-----TTTTTTTGTAAAATTCACAACTAAAACATGACAATGCTTTCAAAATG-TTCAAAACACATTATTATTG-CCATTCAAAT--ATA-AAAA---GAGCATTAAAATAA-GGAAAATGTATTTCTAA------AAAAGAAGAAATAAGGATTATTTATAACCACCATTATGTGATTACCCCACGAAAGCATTTCCTGTTTCCAAAGATGGTATTGTaaacaatttaaa
gi|12 : CTATTATGCGACTACTCCACGGAAGCAATTCCTTTTTCTAATGGT--TACTATGCC--TCCACCA-AGCAAT
gi|14 : cAGGTGTCAGACCACCATTGACT-TTCCTTC-ATATTTCATTAGTGAATGCAACTTT-----TTTAAAGGCTTATAATTGACAGAAAGAacttcgagcgtgatttggttaatttgtaagaccctggcgtctgtttcacaaacatttttaagggaatttatcaggatttttttaatcttttaatt
gi|15 : ATTATTT-TTTGTTCTTTATTCTA-TATTAACT--AAAC-TGAA--TTTGCATACTTGTCATTCATAGAGAGACACTAATGAAgacacacac
gi|16 : attaTTCAGAA-----------------ATCAT--------GTA------TTAATTCACCAATTTCCAAGAATCAA
gi|17 : aaagtcaaagcaaactattatattttattAGGTGCAAGTCCACCATTGATT-TTTTTTATTATTTCTA-TAGTGTAC--AA----AACATTTTCAAAG
gi|18 : gttgttatGGTGTAACCCCAACATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGC--GTCAg
gi|19 : tTGTTGACAAAGTGAAAGTAGACTTCAGAA-----------------ATCAT--------ATA------TTCATACTCACATTTCCGAGCATCA
gi|2 : AGGTGTCATCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCAAAGAGAAACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGCCAACCAC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-ACATTCAAAT--AAA-AAAA--TGAGCATTGAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCGACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-TAACA-TGTTGTCGC-GCATT-T-TTTCTGAAAATAT-AATGA-------AATACTTT---AGATATACAGTTTA-ATATATCTTT
gi|20 : ATGATGAGAAAAGTAGGGGTCATGTATCTTCTAAGA--A-Aga
gi|21 : aaAGGTGTATTCCCACCATTGATT-TGTGTTCTTTAATCTA-TAGTAaatttct
gi|22 : gAAGCATTTCCTGTTTGCAACAGTGGTACTACGCC--T-
gi|23 : AGGTGTAACCCCACCATTGGTT-TTATTTCTTTATTCTattat
gi|3 : AGGTGTAACCCCACCATTGATTGTTTGTTCTGTATTATT-TAGTAAAT--AA---TAAAAGTACCAAGTCTTGTCATTCATAGAAAAACACAA-TGAAAGAAGTGA-A-ACTTACATTTTACTGTTTGTCAGCCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAAAAAG-AATTC---------CTGTTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATTCGCCAATCTCCGAGCATCA----TTTTTTTCTAAA-TACACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCTAAT--AAA-AAAAAATAAGCATTAAAACAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAGGAGTATTTATAACCGCCATTATGCGACTACATCACGGAAGCA-------TTTCCAATGGTGATACTATGCC--A-TAACAGTATAATTGC-GT-------------AGATACAGATTAAGCTATCAATACTTTTCAAGATATGCAAGTCATATATGTTTTT
gi|4 : aAGGTGTAACCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAATAGGAGTCATGTGTCATATAAAA--GTGTTTT----TTTTTCTGCTCAGTGTGTACA----GTGTTAACAAAGTTAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACACCAATTTCCAAGCATCAATTATTTTTTTCTAAA-TTCAAAATTCAAACATGACATTGCCATCAAAATG-TTCAATATACATCAATAATG-ACATTCAAAT--AAA-AAAG---GAGTATTAAAATCT-GGAAAAT-CATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAA-----------CGACTGCACCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGCCTAT-TAGCA-T
gi|5 : aAGGTATCATCCCACCATTGATT-TTTGTTATTTATTCTT-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAAACCCAAATGAAAAAAGTGA-A-ACCTACATTCTACTGTTTGTCAACCTC-TG-----CACTATCAAAAAATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT------TTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAACGTAGACTTCCGAA-----------------AGCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTCTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCA-TTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCAACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-tatgcttatgtttaaatgcataaa
gi|6 : aGGTGTAAGCCCACCATTGATT-TTCTTTCTGAATTCTA-TCGTGATT--GA---AACATGTTTAAAGGCTTGTCATTCATTAAAAGACACAAACCAAGGA--TGATATACATACATTTTATTGTCTATTCACATTGTGGCAAACAGTGGCAAAAT-TCATTAGAAAAATACGGGTCATGTTTCATCCAAGA--G-TTTTTGTTTTTTTTCTGTTCAGTGTGTACA----CTGTTGCCAAAGTGAAAATAGACGTCAGAA-----------------GTCAT--------GTA------TACCTATCCCAATTTCCAAGCATCAATTTGTTTTT--TAAA-TTCACAATTCAAACAGTA-AA-------AAAATG-TTAAAAATACACCAATCATG-TCATTC-AAT--CAC-GAAA--TTAGCACTAAAATAA-AGAAAAAGCATTTCTAA------ATAAGAAGAAACAATGATTATTTATCACCGCCATTATGCCACTATTCCGCGGAGCCATTTCCTGTTTCCAATATATGTGTTATGC
gi|7 : AGGTGTAAACCCGCCATTGAGTGTTTGTTATTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAAGATTTTCAATCATAGAGAGACCCAAATGAAAGAAGTGA-G-ACTTACATTTTACTGTTTGTCAACCTC-TG-----CACTACCAAAATAT-ATGAGAAAAGTAGAGGCCATGTGTCGTATAAGA--G-ATTTT----TTT--CTACTCAGTGTGCACA----CTGTTGACAAAGT-AAAGCAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTT-TTTTTCTAAA-TTGACAATTCAAACATGACAACGCTTTCAAAATGATTCAAAATACACCAATAATG-CCATTCAAAT---AA-AAAA--TGAGCATTAGAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAATGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCT--------------CACTATGCC--T-TAAat
gi|8 : aAGGTGTAAACCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCGAAATATGATGAGAAAAGTAGGAGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACATCCGAA-----------------ATCAT--------GTA------ATCATACCCCAATTTCCAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCACAATG-TTCAAAATACATCAAAAATA-TCATTCAAATAAAAA-AAAA--TGAGCATTAAAATAA-GAAAAATTCATTTTTAA------AGAAGAAGAAATGAGGATTATTTATAACC-------------------------GCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-
gi|9 : GATGTAATCCCATCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTAGAAGGCTTGTCATTCACAGAGAGACACAAATGAAAGAAGTGA-A-ACTTACATTTTACTGTTTATCAACATC-TG-----CAATATCAAAATATGATGAGAAAAGCAGGGGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAATGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCA---TTTTATTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTTAATT--AAA-AAA----GAGCATTAAAATAA-GGAAAATGCCTTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGTAAGCCAATCATTAATTATCATTCTTATTGTTATAGTGAATGAAACATAATTAAATGATTGCCATTCTAAGTAAGACACAAATCACAGAT
Alignments
lowQualScore : 11111 11111 22222222222222222 11111111 11 111111 1 5555555555555555 111 3333333 222 1
lowQualScore : 1 5 2 44 999 4 4 4 00000 55 3 4 11111 0 7777 0 11111111111111111 11111111 888888 11 3 2 3 3 55 3 777 3 000000 1 0 1 4 2 66 4 99 1 2 8888888888888888 1 333 2222222 111 1 5
lowQualScore : . . . .. ... . . . ..... .. . . ..... . .... . ................. ........ ...... .. . . . . .. . ... . ...... . . . . . .. . .. . . ................ . ... ....... ... . .
lowQualScore : 0 3 9 22 666 4 4 0 00000 00 6 9 99999 7 7777 2 55555555555555555 22222222 888888 22 6 4 6 6 00 6 111 6 555555 8 7 2 2 3 11 4 00 0 0 3333333333333333 0 777 0000000 000 0 5
consensus : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
Reference ( family-3058 ) : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
gi|1 : AGGTGTAACCCTACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGTCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-AG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTT-CTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GAA------TTCATACCCCAATTTCAAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGAAAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-ACAA--TGAGCATTAAAATAT-GGAAAATGCATTTTTAA------AGAAGAGGAATTGAGGATTATTTATAACCGCCATTATGCGACTATCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGCC--T-GAA-A-GGCTAT-GCTACATTGTGT---TGGATATATGTATGA
gi|10 : TT-TG-----CAGTTTGAACATACCATTATAATATTAGAGATCAGATTTCATCCAAAT--G-ACATT----AGTTTCCGTTCAATGTGTACATACACCACTGACAAAGTGAAAGCAGGCTTCCAAAACAATAAAAGTATACCGATCATTTTGGTTGGT-------TTTATACTCCCATTTTCATGCAT-GATTT--------TAAA-TTTAAAAATTAAACATGATAGTATT-TCTACTTG-GTCCATATCGATCAATTATATCCATTCAAAT--CACTAAAA--T----ACT--AATAACACAAAATCCAACATTAAACCACGAAAAAAAGAAA-GAGAAcattgatatatacagactcgtctcagacctttatagac
gi|11 : aacctctggcaGTGTGTTCA----CTGTTGACAAAGTGAAAGTAGACTTCTGAA-----------------AGCAT--------GTAAATCTATACATACCCCAATTTCCAAGCATC-----TTTTTTTGTAAAATTCACAACTAAAACATGACAATGCTTTCAAAATG-TTCAAAACACATTATTATTG-CCATTCAAAT--ATA-AAAA---GAGCATTAAAATAA-GGAAAATGTATTTCTAA------AAAAGAAGAAATAAGGATTATTTATAACCACCATTATGTGATTACCCCACGAAAGCATTTCCTGTTTCCAAAGATGGTATTGTaaacaatttaaa
gi|12 : CTATTATGCGACTACTCCACGGAAGCAATTCCTTTTTCTAATGGT--TACTATGCC--TCCACCA-AGCAAT
gi|14 : cAGGTGTCAGACCACCATTGACT-TTCCTTC-ATATTTCATTAGTGAATGCAACTTT-----TTTAAAGGCTTATAATTGACAGAAAGAacttcgagcgtgatttggttaatttgtaagaccctggcgtctgtttcacaaacatttttaagggaatttatcaggatttttttaatcttttaatt
gi|15 : ATTATTT-TTTGTTCTTTATTCTA-TATTAACT--AAAC-TGAA--TTTGCATACTTGTCATTCATAGAGAGACACTAATGAAgacacacac
gi|16 : attaTTCAGAA-----------------ATCAT--------GTA------TTAATTCACCAATTTCCAAGAATCAA
gi|17 : aaagtcaaagcaaactattatattttattAGGTGCAAGTCCACCATTGATT-TTTTTTATTATTTCTA-TAGTGTAC--AA----AACATTTTCAAAG
gi|18 : gttgttatGGTGTAACCCCAACATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGC--GTCAg
gi|19 : tTGTTGACAAAGTGAAAGTAGACTTCAGAA-----------------ATCAT--------ATA------TTCATACTCACATTTCCGAGCATCA
gi|2 : AGGTGTCATCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCAAAGAGAAACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGCCAACCAC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-ACATTCAAAT--AAA-AAAA--TGAGCATTGAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCGACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-TAACA-TGTTGTCGC-GCATT-T-TTTCTGAAAATAT-AATGA-------AATACTTT---AGATATACAGTTTA-ATATATCTTT
gi|20 : ATGATGAGAAAAGTAGGGGTCATGTATCTTCTAAGA--A-Aga
gi|21 : aaAGGTGTATTCCCACCATTGATT-TGTGTTCTTTAATCTA-TAGTAaatttct
gi|22 : gAAGCATTTCCTGTTTGCAACAGTGGTACTACGCC--T-
gi|23 : AGGTGTAACCCCACCATTGGTT-TTATTTCTTTATTCTattat
gi|3 : AGGTGTAACCCCACCATTGATTGTTTGTTCTGTATTATT-TAGTAAAT--AA---TAAAAGTACCAAGTCTTGTCATTCATAGAAAAACACAA-TGAAAGAAGTGA-A-ACTTACATTTTACTGTTTGTCAGCCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAAAAAG-AATTC---------CTGTTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATTCGCCAATCTCCGAGCATCA----TTTTTTTCTAAA-TACACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCTAAT--AAA-AAAAAATAAGCATTAAAACAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAGGAGTATTTATAACCGCCATTATGCGACTACATCACGGAAGCA-------TTTCCAATGGTGATACTATGCC--A-TAACAGTATAATTGC-GT-------------AGATACAGATTAAGCTATCAATACTTTTCAAGATATGCAAGTCATATATGTTTTT
gi|4 : aAGGTGTAACCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAATAGGAGTCATGTGTCATATAAAA--GTGTTTT----TTTTTCTGCTCAGTGTGTACA----GTGTTAACAAAGTTAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACACCAATTTCCAAGCATCAATTATTTTTTTCTAAA-TTCAAAATTCAAACATGACATTGCCATCAAAATG-TTCAATATACATCAATAATG-ACATTCAAAT--AAA-AAAG---GAGTATTAAAATCT-GGAAAAT-CATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAA-----------CGACTGCACCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGCCTAT-TAGCA-T
gi|5 : aAGGTATCATCCCACCATTGATT-TTTGTTATTTATTCTT-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAAACCCAAATGAAAAAAGTGA-A-ACCTACATTCTACTGTTTGTCAACCTC-TG-----CACTATCAAAAAATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT------TTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAACGTAGACTTCCGAA-----------------AGCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTCTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCA-TTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCAACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-tatgcttatgtttaaatgcataaa
gi|6 : aGGTGTAAGCCCACCATTGATT-TTCTTTCTGAATTCTA-TCGTGATT--GA---AACATGTTTAAAGGCTTGTCATTCATTAAAAGACACAAACCAAGGA--TGATATACATACATTTTATTGTCTATTCACATTGTGGCAAACAGTGGCAAAAT-TCATTAGAAAAATACGGGTCATGTTTCATCCAAGA--G-TTTTTGTTTTTTTTCTGTTCAGTGTGTACA----CTGTTGCCAAAGTGAAAATAGACGTCAGAA-----------------GTCAT--------GTA------TACCTATCCCAATTTCCAAGCATCAATTTGTTTTT--TAAA-TTCACAATTCAAACAGTA-AA-------AAAATG-TTAAAAATACACCAATCATG-TCATTC-AAT--CAC-GAAA--TTAGCACTAAAATAA-AGAAAAAGCATTTCTAA------ATAAGAAGAAACAATGATTATTTATCACCGCCATTATGCCACTATTCCGCGGAGCCATTTCCTGTTTCCAATATATGTGTTATGC
gi|7 : AGGTGTAAACCCGCCATTGAGTGTTTGTTATTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAAGATTTTCAATCATAGAGAGACCCAAATGAAAGAAGTGA-G-ACTTACATTTTACTGTTTGTCAACCTC-TG-----CACTACCAAAATAT-ATGAGAAAAGTAGAGGCCATGTGTCGTATAAGA--G-ATTTT----TTT--CTACTCAGTGTGCACA----CTGTTGACAAAGT-AAAGCAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTT-TTTTTCTAAA-TTGACAATTCAAACATGACAACGCTTTCAAAATGATTCAAAATACACCAATAATG-CCATTCAAAT---AA-AAAA--TGAGCATTAGAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAATGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCT--------------CACTATGCC--T-TAAat
gi|8 : aAGGTGTAAACCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCGAAATATGATGAGAAAAGTAGGAGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACATCCGAA-----------------ATCAT--------GTA------ATCATACCCCAATTTCCAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCACAATG-TTCAAAATACATCAAAAATA-TCATTCAAATAAAAA-AAAA--TGAGCATTAAAATAA-GAAAAATTCATTTTTAA------AGAAGAAGAAATGAGGATTATTTATAACC-------------------------GCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-
gi|9 : GATGTAATCCCATCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTAGAAGGCTTGTCATTCACAGAGAGACACAAATGAAAGAAGTGA-A-ACTTACATTTTACTGTTTATCAACATC-TG-----CAATATCAAAATATGATGAGAAAAGCAGGGGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAATGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCA---TTTTATTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTTAATT--AAA-AAA----GAGCATTAAAATAA-GGAAAATGCCTTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCC
blockSeqs : G G T GC CTT T T G GCAAA AA T C GTTTT TACA ACAATAAAAGTATACCG TTTGGTTG AATCTA AT A T A T AA T AAT C ACCACG T T G C TA C GT A C GCATTTTTTCTGA A CAG AGCTATC TCA G T
blockSeqs : G G . . AC . . . . . . T A . . . . AT . A . . . . T . . T A T C . . A T T GT G TA
blockSeqs : C . . . . . . . . . . A T . . . . AT . A . . . . T . . C C T G . . T A
blockSeqs : T . . . . . . . . . . T T . . . . AT . A . . . . T . . C T G G . . T
blockSeqs : T . . . . . . . . . . T T . . . . AT . A . . . . T . . T C T C . .
blockSeqs : C . . . . . . . . . . T T . . . . AT . T . . . . T . . C C T C . .
blockSeqs : C . . . . . . . . . . T T . . . . . . A . . . . T . . C T G G . .
blockSeqs : C . . . . . . . . . . . . . . . . . . A . . . . . . . T C T C . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . C C . G
blockSeqs : G . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . .
blockSeqs : A . . . . . . .
blockSeqs : T . .
blockSeqs : .
blockSeqCons : AT
originalCons : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
finalCons : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGTAAGCCAATCATTAATTATCATTCTTATTGTTATAGTGAATGAAACATAATTAAATGATTGCCATTCTAAGTAAGACACAAATCACAGAT
Alignments
lowQualScore : 11111 11111 22222222222222222 11111111 11 111111 1 5555555555555555 111 3333333 222 1
lowQualScore : 1 5 2 44 999 4 4 4 00000 55 3 4 11111 0 7777 0 11111111111111111 11111111 888888 11 3 2 3 3 55 3 777 3 000000 1 0 1 4 2 66 4 99 1 2 8888888888888888 1 333 2222222 111 1 5
lowQualScore : . . . .. ... . . . ..... .. . . ..... . .... . ................. ........ ...... .. . . . . .. . ... . ...... . . . . . .. . .. . . ................ . ... ....... ... . .
lowQualScore : 0 3 9 22 666 4 4 0 00000 00 6 9 99999 7 7777 2 55555555555555555 22222222 888888 22 6 4 6 6 00 6 111 6 555555 8 7 2 2 3 11 4 00 0 0 3333333333333333 0 777 0000000 000 0 5
consensus : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
Reference ( family-3058 ) : AGGTGTAANCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTNCAATGGTGGTACTATGCC--T-TAACA-TGCNATCGC-GCATT-T-T---TGGANATACGNATGAAGCTATCAATACTTTTCAAGATATGCAGNTCATATATGTCTTT
gi|1 : AGGTGTAACCCTACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAGTCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-AG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTT-CTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GAA------TTCATACCCCAATTTCAAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGAAAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-ACAA--TGAGCATTAAAATAT-GGAAAATGCATTTTTAA------AGAAGAGGAATTGAGGATTATTTATAACCGCCATTATGCGACTATCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGCC--T-GAA-A-GGCTAT-GCTACATTGTGT---TGGATATATGTATGA
gi|10 : TT-TG-----CAGTTTGAACATACCATTATAATATTAGAGATCAGATTTCATCCAAAT--G-ACATT----AGTTTCCGTTCAATGTGTACATACACCACTGACAAAGTGAAAGCAGGCTTCCAAAACAATAAAAGTATACCGATCATTTTGGTTGGT-------TTTATACTCCCATTTTCATGCAT-GATTT--------TAAA-TTTAAAAATTAAACATGATAGTATT-TCTACTTG-GTCCATATCGATCAATTATATCCATTCAAAT--CACTAAAA--T----ACT--AATAACACAAAATCCAACATTAAACCACGAAAAAAAGAAA-GAGAAcattgatatatacagactcgtctcagacctttatagac
gi|11 : aacctctggcaGTGTGTTCA----CTGTTGACAAAGTGAAAGTAGACTTCTGAA-----------------AGCAT--------GTAAATCTATACATACCCCAATTTCCAAGCATC-----TTTTTTTGTAAAATTCACAACTAAAACATGACAATGCTTTCAAAATG-TTCAAAACACATTATTATTG-CCATTCAAAT--ATA-AAAA---GAGCATTAAAATAA-GGAAAATGTATTTCTAA------AAAAGAAGAAATAAGGATTATTTATAACCACCATTATGTGATTACCCCACGAAAGCATTTCCTGTTTCCAAAGATGGTATTGTaaacaatttaaa
gi|12 : CTATTATGCGACTACTCCACGGAAGCAATTCCTTTTTCTAATGGT--TACTATGCC--TCCACCA-AGCAAT
gi|14 : cAGGTGTCAGACCACCATTGACT-TTCCTTC-ATATTTCATTAGTGAATGCAACTTT-----TTTAAAGGCTTATAATTGACAGAAAGAacttcgagcgtgatttggttaatttgtaagaccctggcgtctgtttcacaaacatttttaagggaatttatcaggatttttttaatcttttaatt
gi|15 : ATTATTT-TTTGTTCTTTATTCTA-TATTAACT--AAAC-TGAA--TTTGCATACTTGTCATTCATAGAGAGACACTAATGAAgacacacac
gi|16 : attaTTCAGAA-----------------ATCAT--------GTA------TTAATTCACCAATTTCCAAGAATCAA
gi|17 : aaagtcaaagcaaactattatattttattAGGTGCAAGTCCACCATTGATT-TTTTTTATTATTTCTA-TAGTGTAC--AA----AACATTTTCAAAG
gi|18 : gttgttatGGTGTAACCCCAACATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGC--GTCAg
gi|19 : tTGTTGACAAAGTGAAAGTAGACTTCAGAA-----------------ATCAT--------ATA------TTCATACTCACATTTCCGAGCATCA
gi|2 : AGGTGTCATCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCAAAGAGAAACCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGCCAACCAC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTTTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-ACATTCAAAT--AAA-AAAA--TGAGCATTGAAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCGACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-TAACA-TGTTGTCGC-GCATT-T-TTTCTGAAAATAT-AATGA-------AATACTTT---AGATATACAGTTTA-ATATATCTTT
gi|20 : ATGATGAGAAAAGTAGGGGTCATGTATCTTCTAAGA--A-Aga
gi|21 : aaAGGTGTATTCCCACCATTGATT-TGTGTTCTTTAATCTA-TAGTAaatttct
gi|22 : gAAGCATTTCCTGTTTGCAACAGTGGTACTACGCC--T-
gi|23 : AGGTGTAACCCCACCATTGGTT-TTATTTCTTTATTCTattat
gi|3 : AGGTGTAACCCCACCATTGATTGTTTGTTCTGTATTATT-TAGTAAAT--AA---TAAAAGTACCAAGTCTTGTCATTCATAGAAAAACACAA-TGAAAGAAGTGA-A-ACTTACATTTTACTGTTTGTCAGCCTC-TG-----CACTATCAAAATATGATGAGAAAAGTAGGGGTCATGTGTCATATAAAAAAG-AATTC---------CTGTTCAGTGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATTCGCCAATCTCCGAGCATCA----TTTTTTTCTAAA-TACACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCTAAT--AAA-AAAAAATAAGCATTAAAACAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAAGGAGTATTTATAACCGCCATTATGCGACTACATCACGGAAGCA-------TTTCCAATGGTGATACTATGCC--A-TAACAGTATAATTGC-GT-------------AGATACAGATTAAGCTATCAATACTTTTCAAGATATGCAAGTCATATATGTTTTT
gi|4 : aAGGTGTAACCCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCAAAATATGATGAGAAAAATAGGAGTCATGTGTCATATAAAA--GTGTTTT----TTTTTCTGCTCAGTGTGTACA----GTGTTAACAAAGTTAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACACCAATTTCCAAGCATCAATTATTTTTTTCTAAA-TTCAAAATTCAAACATGACATTGCCATCAAAATG-TTCAATATACATCAATAATG-ACATTCAAAT--AAA-AAAG---GAGTATTAAAATCT-GGAAAAT-CATTTTTAA------AGAAGAAGAAACGAGGATTATTTATAA-----------CGACTGCACCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGCCTAT-TAGCA-T
gi|5 : aAGGTATCATCCCACCATTGATT-TTTGTTATTTATTCTT-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAAACCCAAATGAAAAAAGTGA-A-ACCTACATTCTACTGTTTGTCAACCTC-TG-----CACTATCAAAAAATGATGAGAAAAGTAGGGGTCATGTGTCATATAAGA--G-ATTTT------TTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAACGTAGACTTCCGAA-----------------AGCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTTTTTCTTCTAAA-TTCAAAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTCAAAT--AAA-AAAA--TGAGCATTAAAATAA-GGAAAATGCA-TTTTAA------AGAAGAAGAAATGAGGATTATTTAAAACCGCCATTATGCAACTACCCCACAGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-tatgcttatgtttaaatgcataaa
gi|6 : aGGTGTAAGCCCACCATTGATT-TTCTTTCTGAATTCTA-TCGTGATT--GA---AACATGTTTAAAGGCTTGTCATTCATTAAAAGACACAAACCAAGGA--TGATATACATACATTTTATTGTCTATTCACATTGTGGCAAACAGTGGCAAAAT-TCATTAGAAAAATACGGGTCATGTTTCATCCAAGA--G-TTTTTGTTTTTTTTCTGTTCAGTGTGTACA----CTGTTGCCAAAGTGAAAATAGACGTCAGAA-----------------GTCAT--------GTA------TACCTATCCCAATTTCCAAGCATCAATTTGTTTTT--TAAA-TTCACAATTCAAACAGTA-AA-------AAAATG-TTAAAAATACACCAATCATG-TCATTC-AAT--CAC-GAAA--TTAGCACTAAAATAA-AGAAAAAGCATTTCTAA------ATAAGAAGAAACAATGATTATTTATCACCGCCATTATGCCACTATTCCGCGGAGCCATTTCCTGTTTCCAATATATGTGTTATGC
gi|7 : AGGTGTAAACCCGCCATTGAGTGTTTGTTATTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAAGATTTTCAATCATAGAGAGACCCAAATGAAAGAAGTGA-G-ACTTACATTTTACTGTTTGTCAACCTC-TG-----CACTACCAAAATAT-ATGAGAAAAGTAGAGGCCATGTGTCGTATAAGA--G-ATTTT----TTT--CTACTCAGTGTGCACA----CTGTTGACAAAGT-AAAGCAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCAATTTT-TTTTTCTAAA-TTGACAATTCAAACATGACAACGCTTTCAAAATGATTCAAAATACACCAATAATG-CCATTCAAAT---AA-AAAA--TGAGCATTAGAATAA-GGAAAATGCATTTTTAA------AGAAGAAGAAACAATGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCT--------------CACTATGCC--T-TAAat
gi|8 : aAGGTGTAAACCCACCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTTGAAGGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGA-A-ACCTACATTTTACTGTTTGTCAACCTC-TG-----CACTATCGAAATATGATGAGAAAAGTAGGAGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAGTGTGTACA----CTGGTGACAAAGTGAAAGTAGACATCCGAA-----------------ATCAT--------GTA------ATCATACCCCAATTTCCAAGCATCA--TTTTTTTTTCTAAA-TTCACAATTCAAACATGACAATGCTATCACAATG-TTCAAAATACATCAAAAATA-TCATTCAAATAAAAA-AAAA--TGAGCATTAAAATAA-GAAAAATTCATTTTTAA------AGAAGAAGAAATGAGGATTATTTATAACC-------------------------GCACTTCCTTTTTGCAATGGTGGTACTATGCC--T-
gi|9 : GATGTAATCCCATCATTGATT-TTTGTTCTTTATTCTA-TAGTAAAT--AA---TAAAAGTTAGAAGGCTTGTCATTCACAGAGAGACACAAATGAAAGAAGTGA-A-ACTTACATTTTACTGTTTATCAACATC-TG-----CAATATCAAAATATGATGAGAAAAGCAGGGGTCATGTGTCATATAAGA--G-A--TT----TTTTTCTGCTCAATGTGTACA----CTGTTGACAAAGTGAAAGTAGACTTCCGAA-----------------ATCAT--------GTA------TTCATACCCCAATTTCCAAGCATCA---TTTTATTTCTAAA-TTCACAATTCAAACATGACAATGCTATCAAAATG-TTCAAAATACATCAATAATG-CCATTTAATT--AAA-AAA----GAGCATTAAAATAA-GGAAAATGCCTTTTTAA------AGAAGAAGAAACGAGGATTATTTATAACCGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGTAAGCCAATCATTAATTATCATTCTTATTGTTATAGTGAATGAAACATAATTAAATGATTGCCATTCTAAGTAAGACACAAATCACAGAT