lowQualScore : 1 4444444444444444444444 1111 2222222222 1 1111 22222222222222222222222 11111 1 33333
lowQualScore : 5 9999999999999999999999 6 3 3 0 5 0 3333 7777777777 666 0 0 2 6 0 6 3 3 44 3 555555 6 3 3 3 7777 3 1 77777777777777777777777 3 3 3 3 99999 4 3 2 44 8888 4 5 3 5 55555
lowQualScore : . ...................... . . . . . . .... .......... ... . . . . . . . . .. . ...... . . . . .... . . ....................... . . . . ..... . . . .. .... . . . . .....
lowQualScore : 0 5555555555555555555555 7 2 2 2 0 2 2222 1111111111 444 5 4 9 0 2 7 3 3 66 3 999999 9 6 3 3 0000 8 0 22222222222222222222222 3 3 3 3 11111 5 6 6 11 5555 0 7 5 0 00000
consensus : NAGCAT-TGAT-T-T-TATT--CTA--GTGC-TTAGTTTATACTTAATTTATTTT-AGCTCGATTGCGAT-GAAAG--CGCANA-GCTT---ATATGAACCGCTCTCGAGTCCGCTT-CC-T--G-GG---T--AGAACCAGTACTGA-GTGTT-GTT-TT-TG-AGAGGCA-TC-GGG---TCG----AGC-T-GG-G-A-T-CGAACCCGCAAC---CTC-TGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTANCGCCCCGCTTTTT
Reference ( gi|5 ) : CAGTATGTGAT-T-TATATT--CCA--GTATTTTAGTTTATACTTAATTTATTTT-AGCTCGATTGCGAT-GAAAG--CGCATA-GCTT---ATATGAACCGCTCTCGAGCCCG-TT-CC-T--G-GG---T--AGAACTAGTACTGA-GTGTT-GTT-TTATA-AGAGGCA-TT-GGG---TCG----AGT-T-GG-G-A-T-CGAACCCACAGT---CCC-TGGCGTGAGCAACC----AA-CACTCTATCCATTAGACTACTGCCCCGCTTTTT
gi|6 : AGCAT-TGAT-T-T-TACTTACCA--AGATT--AGTGTACA-TTAATCTAGTTT-AGCTCGATTGCGTTTGAAA------AT----TC---AAATGAGTC---TTTGAGTCCG-CG-TG-T--G-GG---T--AGAACCACTTCTGA-TTGCT-GTT-TTCTTTAGTAACA-TT-GGG---TCT----TGC-T-GTTG-A-C-CAAACCCACAAC---CTC-TGACATGAGCGACC----AG-CACTCTTTACACTTCACTAAGGCCCCGCTT
gi|3 : ttGTATTTAAT-TATCTGTT--TTA--GT---TTAGTTTAAACT-AATTTAATTT-AGCTTGATTATGAT-GAAAG--CCCAGA-GCTT---ATTTGAACCGCTCTCAAGTCCGCTT-CC-T--G-AG---C--ATAATAGGTACTGA-GTATT-GGT-TTTTG-AGGGGCAGCT-GGGGCTTTGGTGTAGC-TGGG-G-A-T-TGAACACACAA----CTC-TGGTGTGAGCATCC----AA-CACTCTTGCTACCACACTA-----CCACTTTTT
gi|2 : tgttttaaatatTGTGCTAT-TATATA--CTATGGTGCATTAGTTTATACT-AATTTATTTT-AGCTCGATTACAAT-GGAAG--CTCAGA-GCTT---ATATGAAACGCTCTTGATTTCGCTT-CC-T--G-GG---T--AGAACCAGTACTGA-GTATT-GTT-TTATG-AGAGGCA-TC-GGG---ACG----AGC-G-GG-GAA-T-CAAACCCGCAAC---CTC-TTGCGTGAGCGGTC----AA-CACTTTATCCTTTACACTACCG-CCCGCTtaa
gi|1 : ttttatatttcattaaataagccatgttgtTTATTTAATACTTA-TTTATTTT-AGCTCGATTGCGAT-GAAAG--CTCAGA-GCTT---ACATGAACCGCTCTCGAGTCCGCTT-CC-T--G-GG---T--AGAACCAGTACTGA-GTGTT-GTT-TT-TG-TGAGGCA-TC-GGG---TCG----AAC-TGGG-G-A-T-CGAACTCGCAAC---CTC-TGGCATg
gi|4 : catatttacatagctttcattgaaagaaattaaagacggaaaatttgcgttttattatttgtttacaaTTATTTTATA-TTAATTTATTTC-AGCTTGACTGTAAA-GAAAC--TAGAAA-GCTT---ATAGGAACTGTTCTCAAGTCTGCTT-CC-T--G-GGGGAT--AGAAC-AGTACTTA-GTGTTGGTT-TTTTG-AGAGGCA-AC-GGG---TAA----AGC-TGGG-G-A-T-CGAACCCACAttgcagtttgaacataccattataatattaga
gi|7 : cacactataattatgtattcactgcaaaaataaaatatgtttaaatggaagttatgtttcaataacccattttgcttatatctaTTATACTTG------TTT-AACTCACTTG---T-GAA-----GTA-A-GCT---------AAGTGCTCTTGAATCTG-TT-TC-CAAG-GT---T--ACTGCTAGTACTGA-GTGTT-GTTCTTGCA-AG-GTCA-TC-CAG---TTG----GAT-G-TG-A-A-TACATACCCATGAG---CTC-TGGCATGTGCAGTC----AAGCACTGTAac
gi|16 : tttttttacttgggaagccacgaaattttggcttctgtttaataaggtaaaaaaaTTAAATCATTTTTAACTCGACTGC-----AAAG--TG---A-GCTTGATATATCAATCGC-CTCGAGTCCG-TT-CC-T--G-AT---T--AGAACT
gi|10 : tacttTTAATTTATATT-A--TAAATAGCT-T-GAATA--CGAATAAGCTT---G---GAATCACTCCCATGT----TT-CC-C--G-AG---C--AAAACTGGTAATGA-GCACT-GTT-TT-TG-ATAGGCAATC-ATG---TCG----GACAT-GG-G-A-C-TGAAC--A-AGTTACCTC-TGGTTTGAGTGGTC----AA-CACTGTA
gi|8 : ttaactattcttTCGATTGCGAA-GAAAGTTCG-AT---CTT---ATATGAACCGCTCTCGTGTCGG-TT-TTAT--G-AG---C--CGAATCATTATTGG-GTGTT--T-----TG-AGAGATA-TC-GGG---TCT----AGC-TGGG-G-A-T-CTAACCTGCAAC---CTC-TGGCGTGAACGGCCGGATAA-CAATATATCCACTAca
gi|18 : agaattcaatgaataataatttCACA-GCTT---ATATGAAGCGTTCTTGACTTCACTT-CG-T--G-GG---caattacattagaatttgtttaat
gi|9 : tATT-GCTT---ATGT--ATCACTCTTCAATCAG-TT-T--T--GTGG---TTAAAAACAAGTACTGG-GTGTT-TTT-TTCTG-AGGGTTC-TTCAGA---TCA----AACCT-GT-G-A-T-TGACCTTGCAAC---ATC-TGGCCTGAGTGACC----AA-CACTATATCCACTGCACTATTCTTCCACTTT
gi|13 : aatttcgtttataccaTATTAATCGCTCTCGATTCTG-TTTCC-T--G-GG---T--AGAACgtg
gi|15 : tgatgccttagtgtttagttatactgacttactgatactcagaacgttAACCAGTACTGAAGTGTT-GTT---ATT-CGAGG--------G---TCT----AGC-T-GG-A-AAT-TAAACCCACAGT---CTT-TGGTGTAAGCGATC----AA-CATTGTATCc
gi|11 : AATCAGTACTGG-GAATT-GTT-TT-TG-AAA---A-TT----------------T-T-GG-A-A-T-CAGACCATTGGC---CTC-TAGCATGAGCGGTC----AA-CACTCTATCAACTA
gi|12 : aatcagtgtttaagaGTT-CTT-TTGTA-AG-GTCA-TT-AAA---TCA----AATGT-GG-G-A-T-GGAACCCACA-----CCTATGGCTTGAGTAGCC----AA-ctcta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTAATTTATACCAATTTTCTTTACTTTGGTTACAGACTGAACTCAGATATTTTGTTAATTTTGTTTCCTAGGTAGAACCACTGA
Unaligned ( gi|17 ): ATCGTGAGAGCTGGTTCAGGTATTAAGATTGTGATACCTGGTGTAATTTTAACTCGCCATAACGAAATAAATTCAAA
Alignments
lowQualScore : 2 1111 3333333 11 1 2222
lowQualScore : 0 8 5555 2222222 5 0 2 5 0 4 0 5555 7777 3 555 1 4 555 3 3 3 3 44 3 44 0 77 3 3 555 888888 6 3 3 6 3 3 0 0 8888 4 1 3333
lowQualScore : . . .... ....... . . . . . . . .... .... . ... . . ... . . . . .. . .. . .. . . ... ...... . . . . . . . . .... . . ....
lowQualScore : 0 0 2222 0000000 7 4 5 7 8 0 7 7777 3333 1 444 9 5 444 3 3 3 3 66 3 66 5 99 3 3 888 666666 7 3 3 7 3 3 1 4 5555 0 0 4444
consensus : NAGCATGTGATTT-TAT-T--CTA--GTG--TT-AGTTTATACTTAATTTATTTT-AGCTCGATTGCGAT-GAAAGCNCAGA-GCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
Reference ( family-3057 ) : NAGCAT-TGATTT-TAT-T--CTA--GTGC-TT-AGTTTATACTTAATTTATTTT-AGCTCGATTGCGAT-GAAAGCGCANA-GCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTANCGCCCCGCTTTTT
gi|1 : -TT-ATTTAATACTTA-TTTATTTT-AGCTCGATTGCGAT-GAAAGCTCAGA-GCTT---ACATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGTGAGG--C-ATC-GGG---TCG----AAC-TGG-G-G-AT-CGAACTCGCAACCTCTGGCAT
gi|10 : catatttacatagctttcattgaaagaaattaaagacggaaaatttgcgttttattatttgtttacaaTTAATTTATATT-A--TAAATAGCT-T-GAATACGAATAAGCTT---G---GAATCACTCCCATGT----TTCCCGAG---C-AAAACTG-GTAATG-AGCACT-G--TT-TT--TGATAGG--CAATC-ATG---TCG----GACAT-G-G-G-AC-TGAACAAGTTACCTCTGGTTTGAGTGGTC----AA-CACTGTAttgcagtttgaacataccattataatattaga
gi|11 : ttaactattcttAATCA-GTACTG-GGAATT-G--TT-TT--TGAAA------ATT----------------T-T-G-G-A-AT-CAGACCATTGGCCTCTAGCATGAGCGGTC----AA-CACTCTATCAACTACTCTAca
gi|13 : aatcagtgtttaagaTA--GTGT-TT-AGTT-ATACT-GACTTACT--------------GAT-A----CTCAGA-ACGT---TTATTAATCGCTCTCGATTCTGTTTCCTGGG---T-AGAACC
gi|15 : tgatgcctAACCA-GTACTGAAGTGTT-G--TTATT--CGA------------GGG---TCT----AGC-T-G-GAA-AT-TAAACCCACAGTCTTTGGTGTAAGCGATC----AA-CATTGTATC
gi|16 : TTAAATCATTTTTAACTCGACTGC-----AAAGTG---A-GCTTGATATATCAATCGC-CTCGAGTCCG-TTCCTGAT---T-AGAAC
gi|18 : tacttCACA-GCTT---ATATGAAGCGTTCTTGACTTCACTTCGTGGG---t
gi|2 : tATTA-TAT-A--CTATGGTGCATT-AGTTTATACT-AATTTATTTT-AGCTCGATTACAAT-GGAAGCTCAGA-GCTT---ATATGAAACGCTCTTGATTTCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTATT-G--TT-TTA-TGAGAGG--C-ATC-GGG---ACG----AGC-G-G-G-GAAT-CAAACCCGCAACCTCTTGCGTGAGCGGTC----AA-CACTTTATCCTTTACACTACCG-CCCGCT
gi|3 : ttttatatttcattaaataagccatgttgttgtgctTC-TGT-T--TTA--GT---TT-AGTTTAAACT-AATTTAATTT-AGCTTGATTATGAT-GAAAGCCCAGA-GCTT---ATTTGAACCGCTCTCAAGTCCGCTTCCTGAG---C-ATAATAG-GTACTG-AGTATTGG--TT-TT--TGAGGGG--C-AGCTGGGGCTTTGGTGTAGC-TGG-G-G-AT-TGAACACACAA-CTCTGGTGTGAGCATCC----AA-CACTCTTGCTACCACACTA-----CCACTTTTTg
gi|4 : tgttttaaatatgtatttaattaT-TATAT--CTA-------TT-ATTTTATA-TTAATTTATTTC-AGCTTGACTGTAAA-GAAACTAGAAA-GCTT---ATAGGAACTGTTCTCAAGTCTGCTTCCTGGGGGAT-AGAA-CA-GTACTT-AGTGTT-GGTTT-TT--TGAGAGG--C-AAC-GGG---TAA----AGC-TGG-G-G-AT-CGAACCCACAACtaa
gi|5 : cacactataattatgtattcactgcaaaaataaaatatgtttaaatggaagttatgtttcaataacccattttgcAGTATGTGATTTATAT-T--CCA--GTAT-TTTAGTTTATACTTAATTTATTTT-AGCTCGATTGCGAT-GAAAGCGCATA-GCTT---ATATGAACCGCTCTCGAGCCCG-TTCCTGGG---T-AGAACTA-GTACTG-AGTGTT-G--TT-TTA-TAAGAGG--C-ATT-GGG---TCG----AGT-T-G-G-G-AT-CGAACCCACAGTCCCTGGCGTGAGCAACC----AA-CACTCTATCCATTAGACTACTGCCCCGCTTTTT
gi|6 : cAGCAT-TGATTT-TAC-TTACCA--A-GA-TT-AGTGTACA-TTAATCTAGTTT-AGCTCGATTGCGTTTGAAAATTCAAA-----------TGAGTC---TTTGAGTCCGCGTG-TGGG---T-AGAACCA-CTTCTG-ATTGCT-G--TT-TTCTTTAGTAA--C-ATT-GGG---TCT----TGC-T-G-TTG-AC-CAAACCCACAACCTCTGACATGAGCGACC----AG-CACTCTTTACACTTCACTAAGGCCCCGCTT
gi|7 : ttTTATACTTG------TTT-AACTCACTTG---T-GAA---GTA-A-GCT---------AAGTGCTCTTGAATCTGTTTCCAAGG---TTACTGCTA-GTACTG-AGTGTT-G--TT-CT--TGCAAGGT-C-ATC-CAG---TTG-----GA-T-GTG-A-ATACATACCCATGAGCTCTGGCATGTGCAGTC----AAGCACTGTA
gi|8 : tttttttacttgggaagccacgaaattttggcttctgtttaataaggtaaaaaaaTCGATTGCGAA-GAAAGTTC-GA-TCTT---ATATGAACCGCTCTCGTGTCGGTTTTATGAG---C-CGAATCA-TTATTG-GGTG-------T-TT--TGAGAGA--T-ATC-GGG---TCT----AGC-TGG-G-G-AT-CTAACCTGCAACCTCTGGCGTGAACGGCCGGATAA-CAATATATCCACTACA
gi|9 : agaattcaatgaataataattt-GCTT---ATGT--ATCACTCTTCAATCAGTTTTGTGGT---T-AAAAACAAGTACTG-GGTGTT-T--TT-TTC-TGAG-GGTTC-TTC-AGA---TCA----AACCT-G-T-G-AT-TGACCTTGCAACATCTGGCCTGAGTGACC----AA-CACTATATCCACTGCACTATTCTTCCACTTTattacattagaatttgtttaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTCTTTTGTAAGGTCATTAAATCAAATGTGGGATGGAACCCACACCTATGGCTTGAGTAGCCAAAGCGTATACACTTCACCACGGACCTGC
Unaligned ( gi|14 ): TTAATTTATACCAATTTTCTTTACTTTGGTTACAGACTGAACTCAGATATTTTGTTAATTTTGTTTCCTAGGTAGAACCACTGA
Unaligned ( gi|17 ): ATCGTGAGAGCTGGTTCAGGTATTAAGATTGTGATACCTGGTGTAATTTTAACTCGCCATAACGAAATAAATTCAAA
Alignments
lowQualScore : 11 1111 3333333 11111 11 11 1
lowQualScore : 6 88 8 5555 5555555 99 4 1 1 4 11111 4 00 4 1 555 1 4 555 3 3 3 3 44 3 44 0 77 3 3 555 888888 6 3 3 6 3 3 0 0 8888 4 1 1 3
lowQualScore : . .. . .... ....... .. . . . . ..... . .. . . ... . . ... . . . . .. . .. . .. . . ... ...... . . . . . . . . .... . . . .
lowQualScore : 7 33 0 2222 4444444 22 3 9 9 4 11111 4 11 5 0 444 9 5 444 3 3 3 3 66 3 66 5 99 3 3 888 666666 7 3 3 7 3 3 1 4 5555 0 0 4 2
consensus : NAGCATGTG--ATTT-TAT-T--CTA--GTA--TT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAGAGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
Reference ( family-3057 ) : NAGCATGTG--ATTT-TAT-T--CTA--GTG--TT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCNCAGAGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
gi|1 : --TT--ATTTAATACTTA-TTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAGAGCTT---ACATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGTGAGG--C-ATC-GGG---TCG----AAC-TGG-G-G-AT-CGAACTCGCAACCTCTGGCAT
gi|10 : catatttacatagctttcattgaaagaaattaaagacggaaaatttgcgttttattatttgtttacaaTTAATTTATATTATAAAT-AGCTTGAATACGA--------ATA-AGCTT---G---GAATCACTCCCATGT----TTCCCGAG---C-AAAACTG-GTAATG-AGCACT-G--TT-TT--TGATAGG--CAATC-ATG---TCG----GACAT-G-G-G-AC-TGAACAAGTTACCTCTGGTTTGAGTGGTC----AA-CACTGTAttgcagtttgaacataccattataatattaga
gi|11 : ttaactattcttAATCA-GTACTG-GGAATT-G--TT-TT--TGAAA------ATT----------------T-T-G-G-A-AT-CAGACCATTGGCCTCTAGCATGAGCGGTC----AA-CACTCTATCAACTACTCTAca
gi|13 : aatcagtgtttaagaCTCAGAACGT---TTATTAATCGCTCTCGATTCTGTTTCCTGGG---T-AGAACC
gi|15 : tgatgccttagtgtttagttatactgacttactgataAACCA-GTACTGAAGTGTT-G--TTATT--CGA------------GGG---TCT----AGC-T-G-GAA-AT-TAAACCCACAGTCTTTGGTGTAAGCGATC----AA-CATTGTATC
gi|16 : TTAAATCAT-TT-----TTAACTCGACTGC-----AAAGT---GAGCTTGATATATCAATCGC-CTCGAGTCCG-TTCCTGAT---T-AGAAC
gi|18 : tacttCACAGCTT---ATATGAAGCGTTCTTGACTTCACTTCGTGGG---t
gi|2 : tTGTGCTATTA-TAT-A--CTATGGTGCATT--AGTTTATACT-AATTTAT-TT-----T-AGCTCGATTACAAT-GGAAGCTCAGAGCTT---ATATGAAACGCTCTTGATTTCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTATT-G--TT-TTA-TGAGAGG--C-ATC-GGG---ACG----AGC-G-G-G-GAAT-CAAACCCGCAACCTCTTGCGTGAGCGGTC----AA-CACTTTATCCTTTACACTACCG-CCCGCT
gi|3 : ttttatatttcattaaataagccatgttgtTC-TGT-T--TTA--GT---TT--AGTTTAAACT-AATTTAA-TT-----T-AGCTTGATTATGAT-GAAAGCCCAGAGCTT---ATTTGAACCGCTCTCAAGTCCGCTTCCTGAG---C-ATAATAG-GTACTG-AGTATTGG--TT-TT--TGAGGGG--C-AGCTGGGGCTTTGGTGTAGC-TGG-G-G-AT-TGAACACACAA-CTCTGGTGTGAGCATCC----AA-CACTCTTGCTACCACACTACCACg
gi|4 : tgttttaaatatgtatttaattaT-TATAT--CTA-------TT--ATTTTATA-TTAATTTAT-TT-----C-AGCTTGACTGTAAA-GAAACTAGAAAGCTT---ATAGGAACTGTTCTCAAGTCTGCTTCCTGGGGGAT-AGAA-CA-GTACTT-AGTGTT-GGTTT-TT--TGAGAGG--C-AAC-GGG---TAA----AGC-TGG-G-G-AT-CGAACCCACAACttttttaa
gi|5 : cacactataattatgtattcactgcaaaaataaaatatgtttaaatggaagttatgtttcaataacccattttgcAGTATGTG--ATTTATAT-T--CCA--GTA--TTTTAGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCGCATAGCTT---ATATGAACCGCTCTCGAGCCCG-TTCCTGGG---T-AGAACTA-GTACTG-AGTGTT-G--TT-TTA-TAAGAGG--C-ATT-GGG---TCG----AGT-T-G-G-G-AT-CGAACCCACAGTCCCTGGCGTGAGCAACC----AA-CACTCTATCCATTAGACTACTGCCCCGCTTTTT
gi|6 : cAGCAT-TG--ATTT-TAC-TTACCA--AGA--TT--AGTGTACA-TTAATCTAG-TT-----T-AGCTCGATTGCGTTTGAAAATTCAAA----------TGAGTC---TTTGAGTCCGCGTG-TGGG---T-AGAACCA-CTTCTG-ATTGCT-G--TT-TTCTTTAGTAA--C-ATT-GGG---TCT----TGC-T-G-TTG-AC-CAAACCCACAACCTCTGACATGAGCGACC----AG-CACTCTTTACACTTCACTAAGGCCCCGCTT
gi|7 : ttTTATACTTG-------TT-----T-AACTCACTTGTGAA-GTAAGCTAAG----------------TGCTCTTGAATCTGTTTCCAAGG---TTACTGCTA-GTACTG-AGTGTT-G--TT-CT--TGCAAGGT-C-ATC-CAG---TTG-----GA-T-GTG-A-ATACATACCCATGAGCTCTGGCATGTGCAGTC----AAGCACTGTA
gi|8 : tttttttacttgggaagccacgaaattttggcttctgtttaataaggtaaaaaaaTCGATTGCGAA-GAAAGTTC-GATCTT---ATATGAACCGCTCTCGTGTCGGTTTTATGAG---C-CGAATCA-TTATTG-GGTG-------T-TT--TGAGAGA--T-ATC-GGG---TCT----AGC-TGG-G-G-AT-CTAACCTGCAACCTCTGGCGTGAACGGCCGGATAA-CAATATATCCACTACA
gi|9 : agaattcaatgaataataatttGCTT---ATGT--ATCACTCTTCAATCAGTTTTGTGGT---T-AAAAACAAGTACTG-GGTGTT-T--TT-TTC-TGAG-GGTTC-TTC-AGA---TCA----AACCT-G-T-G-AT-TGACCTTGCAACATCTGGCCTGAGTGACC----AA-CACTATATCCACTGCACTATTCTTCCACTTTattacattagaatttgtttaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTCTTTTGTAAGGTCATTAAATCAAATGTGGGATGGAACCCACACCTATGGCTTGAGTAGCCAAAGCGTATACACTTCACCACGGACCTGC
Unaligned ( gi|14 ): TTAATTTATACCAATTTTCTTTACTTTGGTTACAGACTGAACTCAGATATTTTGTTAATTTTGTTTCCTAGGTAGAACCACTGA
Unaligned ( gi|17 ): ATCGTGAGAGCTGGTTCAGGTATTAAGATTGTGATACCTGGTGTAATTTTAACTCGCCATAACGAAATAAATTCAAA
Alignments
lowQualScore : 11 11 11 2222 11111 11 11 1
lowQualScore : 6 88 11 33 1111 99 4 1 1 4 11111 4 00 1 00 44 555 1 4 555 3 3 3 3 44 3 44 0 77 3 3 555 888888 6 3 3 6 3 3 0 0 8888 4 1 1 3
lowQualScore : . .. .. .. .... .. . . . . ..... . .. . .. .. ... . . ... . . . . .. . .. . .. . . ... ...... . . . . . . . . .... . . . .
lowQualScore : 7 33 22 88 2222 22 3 9 9 4 11111 4 11 6 88 66 444 9 5 444 3 3 3 3 66 3 66 5 99 3 3 888 666666 7 3 3 7 3 3 1 4 5555 0 0 4 2
consensus : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
Reference ( family-3057 ) : NAGCATGTG--ATTT-TATT--CTA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
gi|1 : ATT--ATTTAATACTTA-TTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ACATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGTGAGG--C-ATC-GGG---TCG----AAC-TGG-G-G-AT-CGAACTCGCAACCTCTGGCAT
gi|10 : catatttacatagctttcattgaaagaaattaaagacggaaaatttgcgttttattatttgtttacaTTAATTTATATTATAAAT-AGCTTGAATACGA---ATA--------AGCTT---G---GAATCACTCCCATGT----TTCCCGAG---C-AAAACTG-GTAATG-AGCACT-G--TT-TT--TGATAGG--CAATC-ATG---TCG----GACAT-G-G-G-AC-TGAACAAGTTACCTCTGGTTTGAGTGGTC----AA-CACTGTAttgcagtttgaacataccattataatattaga
gi|11 : ttaactattcttAATCA-GTACTG-GGAATT-G--TT-TT--TGAAA------ATT----------------T-T-G-G-A-AT-CAGACCATTGGCCTCTAGCATGAGCGGTC----AA-CACTCTATCAACTACTCTAca
gi|13 : aatcagtgtttaagaCTCAG--AACGT---TTATTAATCGCTCTCGATTCTGTTTCCTGGG---T-AGAACC
gi|15 : tgatgccttagtgtttagttatactgacttactgataAACCA-GTACTGAAGTGTT-G--TTATT--CGA------------GGG---TCT----AGC-T-G-GAA-AT-TAAACCCACAGTCTTTGGTGTAAGCGATC----AA-CATTGTATC
gi|16 : TTAAATCAT-TT-----TTAACTCGACTGC-----AAAGT---G--AGCTTGATATATCAATCGC-CTCGAGTCCG-TTCCTGAT---T-AGAAC
gi|18 : tacttTCAC--AGCTT---ATATGAAGCGTTCTTGACTTCACTTCGTGGG---t
gi|2 : TGTGCTATTA-TATA--CTATGGTGCATT--AGTTTATACT-AATTTAT-TT-----T-AGCTCGATTACAAT-GGAAGCTCAG--AGCTT---ATATGAAACGCTCTTGATTTCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTATT-G--TT-TTA-TGAGAGG--C-ATC-GGG---ACG----AGC-G-G-G-GAAT-CAAACCCGCAACCTCTTGCGTGAGCGGTC----AA-CACTTTATCCTTTACACTACCG-CCCGCT
gi|3 : ttttatatttcattaaataagccatgttgtTC-TGTT--TTA----GT-TT--AGTTTAAACT-AATTTAA-TT-----T-AGCTTGATTATGAT-GAAAGCCCAG--AGCTT---ATTTGAACCGCTCTCAAGTCCGCTTCCTGAG---C-ATAATAG-GTACTG-AGTATTGG--TT-TT--TGAGGGG--C-AGCTGGGGCTTTGGTGTAGC-TGG-G-G-AT-TGAACACACAA-CTCTGGTGTGAGCATCC----AA-CACTCTTGCTACCACACTACCACg
gi|4 : tgttttaaatatgtatttaattaTATT--ATTTTATA-TTAATTTAT-TT-----C-AGCTTGACTGTAAA-GAAA-CT-AGAAAGCTT---ATAGGAACTGTTCTCAAGTCTGCTTCCTGGGGGAT-AGAA-CA-GTACTT-AGTGTT-GGTTT-TT--TGAGAGG--C-AAC-GGG---TAA----AGC-TGG-G-G-AT-CGAACCCACAACttttttaa
gi|5 : cacactataattatgtattcactgcaaaaataaaatatgtttaaatggaagttatgtttcaataacccattttgcttatatcAGTATGTG--ATTTATATT--CCA----GTATTTTAGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCGCAT--AGCTT---ATATGAACCGCTCTCGAGCCCG-TTCCTGGG---T-AGAACTA-GTACTG-AGTGTT-G--TT-TTA-TAAGAGG--C-ATT-GGG---TCG----AGT-T-G-G-G-AT-CGAACCCACAGTCCCTGGCGTGAGCAACC----AA-CACTCTATCCATTAGACTACTGCCCCGCTTTTT
gi|6 : cAGCAT-TG--ATTT-TACTTACCA----AGATT--AGTGTACA-TTAATCTAG-TT-----T-AGCTCGATTGCGTTTGAAAATTCAA--A----------TGAGTC---TTTGAGTCCGCGTG-TGGG---T-AGAACCA-CTTCTG-ATTGCT-G--TT-TTCTTTAGTAA--C-ATT-GGG---TCT----TGC-T-G-TTG-AC-CAAACCCACAACCTCTGACATGAGCGACC----AG-CACTCTTTACACTTCACTAAGGCCCCGCTT
gi|7 : ttTTATACTTG-------TT-----T-AACTCACTTGTGAA-GTAAGCTAAG------------------TGCTCTTGAATCTGTTTCCAAGG---TTACTGCTA-GTACTG-AGTGTT-G--TT-CT--TGCAAGGT-C-ATC-CAG---TTG-----GA-T-GTG-A-ATACATACCCATGAGCTCTGGCATGTGCAGTC----AAGCACTGTA
gi|8 : tttttttacttgggaagccacgaaattttggcttctgtttaataaggtaaaaaaaTCGATTGCGAA-GAAAGTTC-G--ATCTT---ATATGAACCGCTCTCGTGTCGGTTTTATGAG---C-CGAATCA-TTATTG-GGTG-------T-TT--TGAGAGA--T-ATC-GGG---TCT----AGC-TGG-G-G-AT-CTAACCTGCAACCTCTGGCGTGAACGGCCGGATAA-CAATATATCCACTACA
gi|9 : agaattcaatgaataataatttGCTT---ATGT--ATCACTCTTCAATCAGTTTTGTGGT---T-AAAAACAAGTACTG-GGTGTT-T--TT-TTC-TGAG-GGTTC-TTC-AGA---TCA----AACCT-G-T-G-AT-TGACCTTGCAACATCTGGCCTGAGTGACC----AA-CACTATATCCACTGCACTATTCTTCCACTTTattacattagaatttgtttaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTCTTTTGTAAGGTCATTAAATCAAATGTGGGATGGAACCCACACCTATGGCTTGAGTAGCCAAAGCGTATACACTTCACCACGGACCTGC
Unaligned ( gi|14 ): TTAATTTATACCAATTTTCTTTACTTTGGTTACAGACTGAACTCAGATATTTTGTTAATTTTGTTTCCTAGGTAGAACCACTGA
Unaligned ( gi|17 ): ATCGTGAGAGCTGGTTCAGGTATTAAGATTGTGATACCTGGTGTAATTTTAACTCGCCATAACGAAATAAATTCAAA
Alignments
lowQualScore : 11 11 11 2222 11111 11 11 1
lowQualScore : 6 88 11 33 1111 99 4 1 1 4 11111 4 00 1 00 44 555 1 4 555 3 3 3 3 44 3 44 0 77 3 3 555 888888 6 3 3 6 3 3 0 0 8888 4 1 1 3
lowQualScore : . .. .. .. .... .. . . . . ..... . .. . .. .. ... . . ... . . . . .. . .. . .. . . ... ...... . . . . . . . . .... . . . .
lowQualScore : 7 33 22 88 2222 22 3 9 9 4 11111 4 11 6 88 66 444 9 5 444 3 3 3 3 66 3 66 5 99 3 3 888 666666 7 3 3 7 3 3 1 4 5555 0 0 4 2
consensus : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
Reference ( family-3057 ) : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
gi|1 : ATT--ATTTAATACTTA-TTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ACATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGTGAGG--C-ATC-GGG---TCG----AAC-TGG-G-G-AT-CGAACTCGCAACCTCTGGCAT
gi|10 : catatttacatagctttcattgaaagaaattaaagacggaaaatttgcgttttattatttgtttacaTTAATTTATATTATAAAT-AGCTTGAATACGA---ATA--------AGCTT---G---GAATCACTCCCATGT----TTCCCGAG---C-AAAACTG-GTAATG-AGCACT-G--TT-TT--TGATAGG--CAATC-ATG---TCG----GACAT-G-G-G-AC-TGAACAAGTTACCTCTGGTTTGAGTGGTC----AA-CACTGTAttgcagtttgaacataccattataatattaga
gi|11 : ttaactattcttAATCA-GTACTG-GGAATT-G--TT-TT--TGAAA------ATT----------------T-T-G-G-A-AT-CAGACCATTGGCCTCTAGCATGAGCGGTC----AA-CACTCTATCAACTACTCTAca
gi|13 : aatcagtgtttaagaCTCAG--AACGT---TTATTAATCGCTCTCGATTCTGTTTCCTGGG---T-AGAACC
gi|15 : tgatgccttagtgtttagttatactgacttactgataAACCA-GTACTGAAGTGTT-G--TTATT--CGA------------GGG---TCT----AGC-T-G-GAA-AT-TAAACCCACAGTCTTTGGTGTAAGCGATC----AA-CATTGTATC
gi|16 : TTAAATCAT-TT-----TTAACTCGACTGC-----AAAGT---G--AGCTTGATATATCAATCGC-CTCGAGTCCG-TTCCTGAT---T-AGAAC
gi|18 : tacttTCAC--AGCTT---ATATGAAGCGTTCTTGACTTCACTTCGTGGG---t
gi|2 : TGTGCTATTA-TATA--CTATGGTGCATT--AGTTTATACT-AATTTAT-TT-----T-AGCTCGATTACAAT-GGAAGCTCAG--AGCTT---ATATGAAACGCTCTTGATTTCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTATT-G--TT-TTA-TGAGAGG--C-ATC-GGG---ACG----AGC-G-G-G-GAAT-CAAACCCGCAACCTCTTGCGTGAGCGGTC----AA-CACTTTATCCTTTACACTACCG-CCCGCT
gi|3 : ttttatatttcattaaataagccatgttgtTC-TGTT--TTA----GT-TT--AGTTTAAACT-AATTTAA-TT-----T-AGCTTGATTATGAT-GAAAGCCCAG--AGCTT---ATTTGAACCGCTCTCAAGTCCGCTTCCTGAG---C-ATAATAG-GTACTG-AGTATTGG--TT-TT--TGAGGGG--C-AGCTGGGGCTTTGGTGTAGC-TGG-G-G-AT-TGAACACACAA-CTCTGGTGTGAGCATCC----AA-CACTCTTGCTACCACACTACCACg
gi|4 : tgttttaaatatgtatttaattaTATT--ATTTTATA-TTAATTTAT-TT-----C-AGCTTGACTGTAAA-GAAA-CT-AGAAAGCTT---ATAGGAACTGTTCTCAAGTCTGCTTCCTGGGGGAT-AGAA-CA-GTACTT-AGTGTT-GGTTT-TT--TGAGAGG--C-AAC-GGG---TAA----AGC-TGG-G-G-AT-CGAACCCACAACttttttaa
gi|5 : cacactataattatgtattcactgcaaaaataaaatatgtttaaatggaagttatgtttcaataacccattttgcttatatcAGTATGTG--ATTTATATT--CCA----GTATTTTAGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCGCAT--AGCTT---ATATGAACCGCTCTCGAGCCCG-TTCCTGGG---T-AGAACTA-GTACTG-AGTGTT-G--TT-TTA-TAAGAGG--C-ATT-GGG---TCG----AGT-T-G-G-G-AT-CGAACCCACAGTCCCTGGCGTGAGCAACC----AA-CACTCTATCCATTAGACTACTGCCCCGCTTTTT
gi|6 : cAGCAT-TG--ATTT-TACTTACCA----AGATT--AGTGTACA-TTAATCTAG-TT-----T-AGCTCGATTGCGTTTGAAAATTCAA--A----------TGAGTC---TTTGAGTCCGCGTG-TGGG---T-AGAACCA-CTTCTG-ATTGCT-G--TT-TTCTTTAGTAA--C-ATT-GGG---TCT----TGC-T-G-TTG-AC-CAAACCCACAACCTCTGACATGAGCGACC----AG-CACTCTTTACACTTCACTAAGGCCCCGCTT
gi|7 : ttTTATACTTG-------TT-----T-AACTCACTTGTGAA-GTAAGCTAAG------------------TGCTCTTGAATCTGTTTCCAAGG---TTACTGCTA-GTACTG-AGTGTT-G--TT-CT--TGCAAGGT-C-ATC-CAG---TTG-----GA-T-GTG-A-ATACATACCCATGAGCTCTGGCATGTGCAGTC----AAGCACTGTA
gi|8 : tttttttacttgggaagccacgaaattttggcttctgtttaataaggtaaaaaaaTCGATTGCGAA-GAAAGTTC-G--ATCTT---ATATGAACCGCTCTCGTGTCGGTTTTATGAG---C-CGAATCA-TTATTG-GGTG-------T-TT--TGAGAGA--T-ATC-GGG---TCT----AGC-TGG-G-G-AT-CTAACCTGCAACCTCTGGCGTGAACGGCCGGATAA-CAATATATCCACTACA
gi|9 : agaattcaatgaataataatttGCTT---ATGT--ATCACTCTTCAATCAGTTTTGTGGT---T-AAAAACAAGTACTG-GGTGTT-T--TT-TTC-TGAG-GGTTC-TTC-AGA---TCA----AACCT-G-T-G-AT-TGACCTTGCAACATCTGGCCTGAGTGACC----AA-CACTATATCCACTGCACTATTCTTCCACTTTattacattagaatttgtttaat
blockSeqs : G . TA TA . TT C T A A ATAAA T TT G AA GAT T T GGA T A A G GT A CT TT A T GCT GGTGTA A G T A A A GGAT G C C C
blockSeqs : . . C . . . C T A . . . T G . . T C . . . . . . . A T . . . GG C G . T . . . . G T C
blockSeqs : T . . . C T A . . . T G . . T C . . . . . . . A . . . . TA . G . . . . . . T G C
blockSeqs : . C T A . . . A G . . G C . . . . . . . C . . . . GA . . . . . . . . C T T
blockSeqs : . . T A . . . T A . . A C . . . . . . . . . . . . AA . . . . . . . . C
blockSeqs : . T A . . . A G . . C C . . . . . . . . . . . . GA . . . . . . . . C
blockSeqs : . A . . . A G . . C T . . . . . . . . . . . . TT . . . . . . . . G
blockSeqs : . . . . . . . . . C T . . . . . . . . . . . . TA . . . . . . . . A
blockSeqs : . . . . T T . . . . . . . . . . . . AA . . . . . . . . A
blockSeqs : . . C . . . . . . . . . . . . . G . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
finalCons : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTCTTTTGTAAGGTCATTAAATCAAATGTGGGATGGAACCCACACCTATGGCTTGAGTAGCCAAAGCGTATACACTTCACCACGGACCTGC
Unaligned ( gi|14 ): TTAATTTATACCAATTTTCTTTACTTTGGTTACAGACTGAACTCAGATATTTTGTTAATTTTGTTTCCTAGGTAGAACCACTGA
Unaligned ( gi|17 ): ATCGTGAGAGCTGGTTCAGGTATTAAGATTGTGATACCTGGTGTAATTTTAACTCGCCATAACGAAATAAATTCAAA
Alignments
lowQualScore : 11 11 11 2222 11111 11 11 1
lowQualScore : 6 88 11 33 1111 99 4 1 1 4 11111 4 00 1 00 44 555 1 4 555 3 3 3 3 44 3 44 0 77 3 3 555 888888 6 3 3 6 3 3 0 0 8888 4 1 1 3
lowQualScore : . .. .. .. .... .. . . . . ..... . .. . .. .. ... . . ... . . . . .. . .. . .. . . ... ...... . . . . . . . . .... . . . .
lowQualScore : 7 33 22 88 2222 22 3 9 9 4 11111 4 11 6 88 66 444 9 5 444 3 3 3 3 66 3 66 5 99 3 3 888 666666 7 3 3 7 3 3 1 4 5555 0 0 4 2
consensus : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
Reference ( family-3057 ) : NAGCATGTG--ATTT-TATT--CCA----GTATT--AGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ATATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGAGAGG--C-ATC-GGG---TCG----AGC-T-G-G-G-AT-CGAACCCGCAACCTCTGGCGTGAGCGGCC----AA-CACTNTATCCACTACACTACCGCCCCGCTTTTT
gi|1 : ATT--ATTTAATACTTA-TTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCTCAG--AGCTT---ACATGAACCGCTCTCGAGTCCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTGTT-G--TT-TT--TGTGAGG--C-ATC-GGG---TCG----AAC-TGG-G-G-AT-CGAACTCGCAACCTCTGGCAT
gi|10 : catatttacatagctttcattgaaagaaattaaagacggaaaatttgcgttttattatttgtttacaTTAATTTATATTATAAAT-AGCTTGAATACGA---ATA--------AGCTT---G---GAATCACTCCCATGT----TTCCCGAG---C-AAAACTG-GTAATG-AGCACT-G--TT-TT--TGATAGG--CAATC-ATG---TCG----GACAT-G-G-G-AC-TGAACAAGTTACCTCTGGTTTGAGTGGTC----AA-CACTGTAttgcagtttgaacataccattataatattaga
gi|11 : ttaactattcttAATCA-GTACTG-GGAATT-G--TT-TT--TGAAA------ATT----------------T-T-G-G-A-AT-CAGACCATTGGCCTCTAGCATGAGCGGTC----AA-CACTCTATCAACTACTCTAca
gi|13 : aatcagtgtttaagaCTCAG--AACGT---TTATTAATCGCTCTCGATTCTGTTTCCTGGG---T-AGAACC
gi|15 : tgatgccttagtgtttagttatactgacttactgataAACCA-GTACTGAAGTGTT-G--TTATT--CGA------------GGG---TCT----AGC-T-G-GAA-AT-TAAACCCACAGTCTTTGGTGTAAGCGATC----AA-CATTGTATC
gi|16 : TTAAATCAT-TT-----TTAACTCGACTGC-----AAAGT---G--AGCTTGATATATCAATCGC-CTCGAGTCCG-TTCCTGAT---T-AGAAC
gi|18 : tacttTCAC--AGCTT---ATATGAAGCGTTCTTGACTTCACTTCGTGGG---t
gi|2 : TGTGCTATTA-TATA--CTATGGTGCATT--AGTTTATACT-AATTTAT-TT-----T-AGCTCGATTACAAT-GGAAGCTCAG--AGCTT---ATATGAAACGCTCTTGATTTCGCTTCCTGGG---T-AGAACCA-GTACTG-AGTATT-G--TT-TTA-TGAGAGG--C-ATC-GGG---ACG----AGC-G-G-G-GAAT-CAAACCCGCAACCTCTTGCGTGAGCGGTC----AA-CACTTTATCCTTTACACTACCG-CCCGCT
gi|3 : ttttatatttcattaaataagccatgttgtTC-TGTT--TTA----GT-TT--AGTTTAAACT-AATTTAA-TT-----T-AGCTTGATTATGAT-GAAAGCCCAG--AGCTT---ATTTGAACCGCTCTCAAGTCCGCTTCCTGAG---C-ATAATAG-GTACTG-AGTATTGG--TT-TT--TGAGGGG--C-AGCTGGGGCTTTGGTGTAGC-TGG-G-G-AT-TGAACACACAA-CTCTGGTGTGAGCATCC----AA-CACTCTTGCTACCACACTACCACg
gi|4 : tgttttaaatatgtatttaattaTATT--ATTTTATA-TTAATTTAT-TT-----C-AGCTTGACTGTAAA-GAAA-CT-AGAAAGCTT---ATAGGAACTGTTCTCAAGTCTGCTTCCTGGGGGAT-AGAA-CA-GTACTT-AGTGTT-GGTTT-TT--TGAGAGG--C-AAC-GGG---TAA----AGC-TGG-G-G-AT-CGAACCCACAACttttttaa
gi|5 : cacactataattatgtattcactgcaaaaataaaatatgtttaaatggaagttatgtttcaataacccattttgcttatatcAGTATGTG--ATTTATATT--CCA----GTATTTTAGTTTATACTTAATTTAT-TT-----T-AGCTCGATTGCGAT-GAAAGCGCAT--AGCTT---ATATGAACCGCTCTCGAGCCCG-TTCCTGGG---T-AGAACTA-GTACTG-AGTGTT-G--TT-TTA-TAAGAGG--C-ATT-GGG---TCG----AGT-T-G-G-G-AT-CGAACCCACAGTCCCTGGCGTGAGCAACC----AA-CACTCTATCCATTAGACTACTGCCCCGCTTTTT
gi|6 : cAGCAT-TG--ATTT-TACTTACCA----AGATT--AGTGTACA-TTAATCTAG-TT-----T-AGCTCGATTGCGTTTGAAAATTCAA--A----------TGAGTC---TTTGAGTCCGCGTG-TGGG---T-AGAACCA-CTTCTG-ATTGCT-G--TT-TTCTTTAGTAA--C-ATT-GGG---TCT----TGC-T-G-TTG-AC-CAAACCCACAACCTCTGACATGAGCGACC----AG-CACTCTTTACACTTCACTAAGGCCCCGCTT
gi|7 : ttTTATACTTG-------TT-----T-AACTCACTTGTGAA-GTAAGCTAAG------------------TGCTCTTGAATCTGTTTCCAAGG---TTACTGCTA-GTACTG-AGTGTT-G--TT-CT--TGCAAGGT-C-ATC-CAG---TTG-----GA-T-GTG-A-ATACATACCCATGAGCTCTGGCATGTGCAGTC----AAGCACTGTA
gi|8 : tttttttacttgggaagccacgaaattttggcttctgtttaataaggtaaaaaaaTCGATTGCGAA-GAAAGTTC-G--ATCTT---ATATGAACCGCTCTCGTGTCGGTTTTATGAG---C-CGAATCA-TTATTG-GGTG-------T-TT--TGAGAGA--T-ATC-GGG---TCT----AGC-TGG-G-G-AT-CTAACCTGCAACCTCTGGCGTGAACGGCCGGATAA-CAATATATCCACTACA
gi|9 : agaattcaatgaataataatttGCTT---ATGT--ATCACTCTTCAATCAGTTTTGTGGT---T-AAAAACAAGTACTG-GGTGTT-T--TT-TTC-TGAG-GGTTC-TTC-AGA---TCA----AACCT-G-T-G-AT-TGACCTTGCAACATCTGGCCTGAGTGACC----AA-CACTATATCCACTGCACTATTCTTCCACTTTattacattagaatttgtttaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTCTTTTGTAAGGTCATTAAATCAAATGTGGGATGGAACCCACACCTATGGCTTGAGTAGCCAAAGCGTATACACTTCACCACGGACCTGC
Unaligned ( gi|14 ): TTAATTTATACCAATTTTCTTTACTTTGGTTACAGACTGAACTCAGATATTTTGTTAATTTTGTTTCCTAGGTAGAACCACTGA
Unaligned ( gi|17 ): ATCGTGAGAGCTGGTTCAGGTATTAAGATTGTGATACCTGGTGTAATTTTAACTCGCCATAACGAAATAAATTCAAA