lowQualScore : 111 222222 1111 1 11111 1111 11 1 111 33333333333 111 111111 22 111 4444444444444444444 22222222222 4444444444444444444444444444444444 11 11 33333333333333 5555555555555555 22222222222 1111 33333333333333333333 222222 111111 555555555555555555555555555555555 11 11 33333333333333333333333333333333 22 11 1 2222222222 111111111 1111 111111 11 1 1 111 11 11 111 3333333333333333333333333333 4444444444444444444444444444444 1 1 555555555 666666 1 11
lowQualScore : 333 0 7 0 1 5 8 6 4 1 5 4 333333 5 7 3 8888 6 1 2 5 2 33333 1 44 1111 22 0 7 2 777 555 88 88888888888 3 3 1 0 3 6 1 000 555 000000 3 44 7777777 0 3 00 000 0 4 6 8888888888888888888 9 0 77777 1 99999999999 3 8888888888888888888888888888888888 11 22 0 6 3 8 3 3 00000000000000 3 5 4444444444444444 5 88 0 77777777777 1 4 1 5 2 8 5555 77 77777777777777777777 0 0 77 5 2 3 5 222222 99 222222 666666666666666666666666666666666 2 00 5 33 0 0 00000000000000000000000000000000 2 00 11 0 55 44 77 666 3 4444444444 444444444 1 1111 3 55 1 1 666666 99 0 0 88 1 444 8 22 0 00 8 0 444 5 7777777777777777777777777777 5 11 8 8 22 0 3333333333333333333333333333333 4 4 0 6 3 3 2 77 1 0 5 222222222 888 0 6 999999 8 4 2 88
lowQualScore : ... . . . . . . . . . . . ...... . . . .... . . . . . ..... . .. .... .. . . . ... ... .. ........... . . . . . . . ... ... ...... . .. ....... . . .. ... . . . ................... . . ..... . ........... . .................................. .. .. . . . . . . .............. . . ................ . .. . ........... . . . . . . .... .. .................... . . .. . . . . ...... .. ...... ................................. . .. . .. . . ................................ . .. .. . .. .. .. ... . .......... ......... . .... . .. . . ...... .. . . .. . ... . .. . .. . . ... . ............................ . .. . . .. . ............................... . . . . . . . .. . . . ......... ... . . ...... . . . ..
lowQualScore : 777 7 3 8 4 6 6 2 0 2 6 9 000000 5 4 6 5555 0 6 2 2 9 66666 4 66 1111 11 9 4 0 777 222 44 88888888888 3 3 5 1 3 2 4 999 000 999999 1 22 8888888 8 1 33 333 1 0 6 4444444444444444444 5 7 77777 1 77777777777 3 9999999999999999999999999999999999 99 33 8 7 3 0 3 3 00000000000000 1 6 5555555555555555 5 44 7 33333333333 0 0 6 4 1 9 6666 22 66666666666666666666 4 7 99 1 1 0 7 333333 44 111111 222222222222222222222222222222222 4 99 4 66 9 7 22222222222222222222222222222222 6 33 00 3 00 00 88 444 6 6666666666 555555555 0 4444 6 00 1 9 666666 55 0 0 88 8 000 0 00 8 22 0 8 000 6 6666666666666666666666666666 6 66 0 0 44 8 4444444444444444444444444444444 2 0 5 1 0 0 7 00 4 1 4 333333333 000 8 6 000000 0 7 0 00
consensus : ACTGTATA-TATTGTGCATAGAGTTAATTATAAGNACATTCTTT-AAATTATGAAAGTTATTGA-TTAAGCAAATCTTCATTNAAATC-TCCN--AGCAAAATCANATTNTTTG-ACATTTC--ATAA--GCCTT-TTCGATATTATTATTAAGGCT-G-T-NAAAAAAG--TCTN--CAT-CA-GCTGTTTTAGGG-CTATAAAATA-NNCC---TA--GT--A-A--AA-A-----TTTCT-CTGATTTT--GTTTTG-ATNT---CGAC-CCA-AA--A--GATTCGTCGCAAAATGTTTC-----CAAATCNATTCG---CCTNGAATGAATTATA-TT------------TTTCGANA------A-ATAAATCAAG-ATA-CC-CCCTCCA-TGA-T--TTGT---A----CGATCTTTTCTGT----AAG-T---A---TATCGAANTTGT-CA-TGA-AG-TGTAAA-AGACTATCNGGAA---NGT-NTTGGTC-TA--GAT-G-T--------GTTTCAGTA--AAACANAGAATA-TCATAAGTCCGAAAAATTATCAGCA--ATAA---A--T-T----TTA-AACTTA---TTTCTNATACTTCTAATGTTACAGTGNAANATCGATA----GAGTATGTTGT-TCGTTTGT-----GGTCCCGGATTGNTCTC--AATATCNCCTGC--TTG-CAA-NA---G-AAT-GC--A-A-AAT---------AAAA----TAAT-CTTAAA--TTCAATGTTN-----TCAATAAAAT-CTTTGAGTA-TAAGTGGA---AA-ACATAGTATTNCT-TTTGTCAACCAT---TTTAAAACTAATC-GAACATATATA-TATA-ATGTGTGTGATCCAAATATC-T-GAGTTTAAAAC-----TGC-----CA---TG-A---------TGCAACCATTAAATAAACCTATGGCNGCTCTCCATGTACNGATGTCATTACCCATTGGGTAG-AAGAAAAATAACACTAAAGAAAGGATCACACAAGAGGCCACCAT-ATCACCTATNCCTACCACAAGCTGAAACCCGGAAGTGCCCACATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( gi|2 ) : ACTGTACA-TGTTGTGCATAGAGTTAATTATAAGTACGTTTTTT-AGGTTATAAAAATT-TTGA-TTGAGCAAATCTTCATTTAAATC-TCAT--AACAGAATTACATTATTTG-AGACTTC--ATTA--GCCTG-TTCTATATTTTTGTTAAAAAT-A-T-AAAAAAAAACTCTT--TGT-CA-GCTGTTTTAGGG-CTGTAGAATA-ACCC---TA--GT--A-A--AA-A-----TTTCT-CTGATTTT--GTTTTG-ATGT---CGATACCA-AA--A--GATTCTTCACAAAATATTTC-----CAAATCCATTCG---CCTTGAATGAATTCTG-TT------------TTTCGAGA------A-ATAAATTAAG-ATA-CC-CCTTCCA-TGA-T--GTTT---A----CGATCTTTTTTGT----A---T---A---TATCGAGATTGT-TAATGA-AG-TGTAAA-AGATTGTCTGGAA---AGT-TTTGGTC-TC--GAT-T-T--------GTTTTAGTA--AAATATAAAATA-T-ATAAGTCAGAAAAATTATCAGCA--ATAA---A--T-T----TTA-AACTT----TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACA----GGGTATGTTGT-TCATTTGTA----GGGCCTGGATTAGTCTT--AATATCACCTGC--TTG-CAA-TA---G-AAT-AC--A-A-AAT---------AAGA----TAAT-TTTAAA--TTCAATGTTC-----TCAATCCAAT-CTTTGAGTA-TAAGTGAA---AA-ACACAGTATTTCT-TTTGTCAACCAT---TTTAAAACTAATCGGAACATATATA-TATATATGTGTGTGATCCAAATATC-T-GAATTTAAAAC-----TGC-----CA---TG-A---------TGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAACCCGGAAGTGCCCACATAGGAGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCATAGAGTTAATTATAAGTACGTTTTTT-AGGTTATAAAAATT-TTGA-TTGAGCAAATCTTCATTTAAATC-TCAT--AACAGAATTACATTATTTG-AGACTTC--ATTA--GCCTG-TTCTATATTTTTGTTAAAAAT-A-T-AAAAAAAAACTCTT--TGT-CA-GCTGTTTTAGGG-CTGTAGAATA-ACCC---TA--GT--A-A--AA-A-----TTTCT-CTGATTTT--GTTTTG-ATGT---CGATACCA-AA--A--GATTCTTCACAAAATATTTC-----CAAATCCATTCG---CCTTGAATGAATTCTG-TT------------TTTCGAGA------A-ATAAATTAAG-ATA-CC-CCTTCCA-TGA-T--GTTT---A----CGATCTTTTTTGT----A---T---A---TATCGAGATTGT-TAATGA-AG-TGTAAA-AGATTGTCTGGAA---AGT-TTTGGTC-TC--GAT-T-T--------GTTTTAGTA--AAATATAAAATA-T-ATAAGTCAGAAAAATTATCAGCA--ATAA---A--T-T----TTA-AACTT----TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACA----GGGTATGTTGT-TCATTTGTA----GGGCCTGGATTAGTCTT--AATATCACCTGC--TTG-CAA-TA---G-AAT-AC--A-A-AAT---------AAGA----TAAT-TTTAAA--TTCAATGTTC-----TCAATCCAAT-CTTTGAGTA-TAAGTGAA---AA-ACACAGTATTTCT-TTTGTCAACCAT---TTTAAAACTAATCGGAACATATATA-TATATATGTGTGTGATCCAAATATC-T-GAATTTAAAAC-----TGC-----CA---TG-A---------TGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAACCCGGAAGTGCCCACATAGGAGAAGAAACTGAAAGAAGAGA
gi|12 : ACTGTATT-TATTA---AT-GAGTTTGTGCTTAGCACTTCTCTT-AGATTGTGATAATT-CGGA-TTCATTAAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTG-TAATTTC--AAAA--GCTCT-TTCAATATTATTGTTTATCTT-A-TCAAGAAAAAATGC-----AT-CA-GCTGTTTT-TGG-CTATAAAATG-TTCC---TA--TT--A-GATAA-G-----TTTCA-TT--TTTT--AATTTA-ATTT---CAAC-CCA-AAT-A--GATGCGCTGTAATATACTTC-----TAA--------------TTG-ATGAATTCTT-TTATGAATCAATAATTTCGACA------G-ATATTTCAAA-ATA-CC-CCAACCATTGATT--GTT---------CTATCTTTTCTAT----A---TGGGA---CATCGg
gi|15 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcattaTGTATAGTATTGTGCATAGAGTTAATTATAAGTACATTTTTTTAGGTTATTAAAATT-TTGA-TTCAGCAAATCTTTATTTAAATC-TCCT--AACAGAACTACATT-TTT--AGACTTC--ATTC--GCTTG-TTCTATATTTTTGTTAAAATT-A-T-AAAAAAAATCTCTT--TGT-CA-GCTGTTTTAGGG-CTGTAGAATA-ACAC---TA--GT--A-A--AA-A-----ATTCT-CCGAATTT--GTTTTG-ATGT---GGAC-CCA-AAT-T--GATTCTTCACAAAATATTTC-----CAAATCCtagttatctgtaagaagaatctcgtgattt
gi|6 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTAAGGTTAAT-ATA------TCTTTC-AGGTTATGGAA-TG-ATGAGTTTAGAAGGTTTTCATTAAAATC-ACCT--A---GGACGACGATATTT------TTC--ATAA--GCCTT-CTCAATATTCACATTCAGGTT-A-T-CGAAAAA----CGTGGTAT-CT-GCGGTTTTGGGA-CTATAGAACACACCT---TATAGT--A-T--A---------TTTT-C--ATTTTTGATTTTG-ACAT---TTAT-CCA-AATTA---ATTCGTTATAAAATATTTC-----CAAGTCATTTCG---CCTGGAATGAATAACA-CT------------ATTTGAAA------C-ATAAA-TAAGTATC-CC-CCCTCCA-TGA------TTAGAA----CGGTCCTTTCAATAAA-A---T---A---TATCAAAGTT-T-TCATTA-AG-TATTAA-AGA--GTC---A--------TTTGGTA-TCT-GAT-TATCAAGGTGAGTTTCA-TAACAAACAAAGAATA-TCAT-GGTCTAAAAGGTTTTCAACA--ATAA---AACT-TATCATTATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATA----GAACA-G-----TCA---GT--------CCGGGATTGCTCTC--TATGTCTCCTGC--ATT-CAA-AA---G-AA--GC--A-GTAAT---------AAAA----TTAT-CTTAAA--ATCAACTCTA-----TCAACAAAAT-C
gi|10 : ctggtgggttcatttatagtattgataagtaagttAGAGTTTACTAGTAGCACATCCTTT-AAATTGTGATAGTT-AGGA-TTGTACAAATCTTCGTTGAGATC-GCCT--AGCAAAATAATATTGTTTG-TTACTTCCAAT----GCCTT-TTCAATATTATTATTAAAATTGG-T-AAAAAA-----TTC--TGCACATGCAGTTCTGGGG-CTATAAAACA-ATCC---TA--GC--AGA--AA-A-----TTTGC-AT-ATTTA--GTATTG-AATT---TAAC-CCATAT--G--GATTCGTTGCAAAAAGTTTC-----TAATTCAAAACA---TCTGGAAT---TTCTG-------------------GACA------T-ATAAA-CAAGCAAG-CC-CCCTCCA-TGA-T--TTGT---A----CTATCTTTTCTGT----AAGCA---A---TGTCAAACTTGT-C--TGACAGATGTAAA-AGACTATCAGGAA---TTT-GTTGGTC-AA--GAT-G-A--------GTTTCTGAA--AAACCAAGAATA-TCATAA-TCCAAAAAATTATC---------A---A--T-T----TT----CTT----------ATACTTCTAATGTTATAATGAAATATTGATAAACTGTGTAAATTGT-ACGTT--------GGTCCTGGGTT--TCTTTCAACATCTCCTGC--TTG-TAA-AA---G-AAG-GA--G-T-AGT---------AAAG----CAAT-CTTAAACTTTTTTTTTTG-----TCAACAAAATCCTTTGAactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaataga
gi|17 : taatggagtgaaggatagcattaattctggtaggttcgtttataatatttacaagAAGAACATTCTTT-AAATTATGAAAGTTATTG--TTAAGCAAATCTTCATTAAAATC-TCCA--AGTAAAATCAAATTCTTGG-ACATTTC--GTAA--GCTTT-TTCGATATTATTATTAAGGCT-G-T-TAAAGAAG--TCTA--CAT-CA-GCTGTTTTAGGG-CTATAAAATA-CGCC---TA--ATAGA-A--AA-A-----TTTCT-cagtaatt
gi|22 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGAACATTCTTT-AAATTATGAAAGTTATTG--TTAAGCAAATCTTCATTAAAATC-TCCA--AGTAAAATCAAATTCTTGG-ACATTTC--GTAA--GCTTT-TTCGATATTATTATTAAGGCT-G-T-TAAAGAAG--TCTA--CAT-CA-GCTGTTTTAGGG-CTATAAAATA-CGCCTTATA--G---A-A--AA-A-----TTTCT-t
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGAACATTCTTT-AAATTATGAAAGTTATTG--TTAAGCAAATCTTCATTAAAATC-TCCA--AGTAAAATCAAATTCTTGG-ACATTTC--GTAA--GCTTT-TTCGATATTATTATTAAGGCT-G-T-TAAAGAAG--TCTA--CAT-CA-GCGGTTTTAGGG-CTATAAAATA-CGCC---TA--ATAGA-A--AA-A-----TTTCT-tgt
gi|14 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGAACATTCATA-AAATTATGAAAGTTATTG--TTAAGCAAATATTCATTTAGATC-TCCA--AGTAAAATTAAATTCTTGG-ACATTTC--ATAA--GCTTT-TTCGATAATAGTATTAAGGCT-G-T-TAAAGAAG--TCTG--CAT-CA-GCTGTTTTAGGG-TTAT----TA-ACCT---TA--t
gi|4 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaTTCTTT-AAATTATGAAAGTTATTG--TTAAGCAAATCTTCATTAAGATC-TCCA--AGTAAAATCAAATTCTTGG-ACATTTC--ATAA--G-CTGTTTCGATATTATTATTAAGGCT-G-T-TAAAGAAG--TCTG--CAC-CA-GCTATTTTAGGG-CT-TAAAATA-CGCC---TA--AT--A-A--AA-AAATGTTTTGTCCCGATTTA--ACCTTA-AC----------CCA-GAT-A--GATACATTAC-AAATGTTTC-----CAGAT---TTGGAACTCTTGAATGAATTATA-TC------------TTT-GCTA------A-ATATATCAAA-ATA-CC-CCCACCA-TGA-T--TTGT---T----CTATCTTTGCGGT----AAGGT---T---CATCAAATTTAT-CACT-A-AG-TTTCAATAAATCATAAGAGA---CGT-GTGTATT-TA--AGT-G-C--------GTTTCAGTA--AATGATACAATA-T-CAAAATATGAAAGAGTGTAA--A--ATAC---A--TAA----TCA-ATCTT----------ATACTTCTAATGTTGTAATGAAAAAAGGACA----AACTATGAGAT-TCATTGCCA----GGACCCGGGTTTGTTTC--AAAATCCCAAAC--TTC-TAA-TA---A-AAT--C--AGA-AGT---------AAAA----TAAA-CATAAA--TTCTATATTT-----TGAAaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|7 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaaagaaatAAGTTTTCATTAAAATC-ACCT--AACAAGACGATATC-TTTACATGTTTC--ATTG--ATCTT-CTCCATACTTGCATTTAGGTT-A-T-GAAAACAAACGTTC--TAT-CT-GCAGTT--GGGGACTATAGAACA-CATC---TA--AT--A-G--TATA-----TTT-T-C--ATTTT------TG-ATTT---TG-T------------GATTCGTTGCAAAATATTTG-----CGAGTCACTTAG---CATGGTATGAATAGTA-CC------------ATTTGAAA------C-CTAAAT--AC-GTA-TC-CC---CA-CGA-T-----T---AAAA-TGGTCCTTTCTAT----AAAAT---A---TATAAATATTCT-CA-TTA-AA-TATTAA-A------CTGCCATTTAGTATCTGGTTATCAAGAT-G-A--------GTTTCAGTA--AAACAAAGAATACC-ACGA-TCTCAAAGGTTTTCAGAA--ATAA---A--A-T----TT--ATCTTA---TTTCTTATACTTCTTATATTACAATGTAAAACCGATA----AAACATATTCA-TCGTCTGTG----GGTCAAGCATTGCTTTC--CATGTCTCTTGC--ATA-CAA-AA---G-CA--GC--A-GTAAT---------AAAAC---TATC-TTCAAA--TCCAATcaaattcacgtagtattaa
gi|9 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAGATTGTCTG-TTACTCC----TAATGCCTT-TTCAATATTTATATTAAAATT-AGT-AAAAAAA---TCTG--CAT-CT-GCAGTTTTGGGG-CTATAAAACA-ATCC---TA--GT--A-G--AATA-----TTTGC-AT-ATTTA--GTATTGAATTTAACCCATATCA---------ATTCGTTGCAAAATGTTTT-----TAATTAAAAACA---TCTAGAATTAATTAAA-TT------------CCATGACA------T-ATAAA-CAAG-AAAGCC-CCCTCCA-CGA-C--TTGT---A----CAAT-TTTTCTGT----AAGCA---A---TGTCTAACTTGT-C--TGACAGATGTAGT-AGACTATCAGGAA---TGT-ATTGGTC-AA--GAT-G-T--------G-TTTATGA--AAACATAGACTA-TCATAA-TCCAAAAAGTGAT---CA--ATAA--------------TA-TACTTA---TTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGTGTAAATTGT-ACGTT--------GGTCCCGGGTT--TCTTTCAATATTTCCTGC--TTG-TAA-AA---G-GAG-GA--G-C-AAT---------AAAA----CAAT-CTTAAA--ATC--TGTTTTTTTGTTAATAAAATCCTTTGA-TATTTATTGCATTTGA-AC----TATTCCTCTTTG-CGACCAG---TT---------------CATTTATAGTATAAATATGTATAA--CAAA-----T-GAAGCGAAAAT-----T-------------------------TACAAGTATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAtaatcaacaaaatcattcaaaatggtatcaacaagagagattactcttattgtattgtctaaaaaacagtaaacatagtgttgttaaagataccttaaaaattagtttacaatgtgccaatatgctacagccattatatagac
gi|26 : CC---TA---T--C-A--AA-A-----TGTCT-CT-ATTCT---TTTT--ATGT---CAG--CCA-AA--ATAGATTCATCACAAAATATTTC-----CAAACTTATGCG---TCTTGAATAAA----G-T-----------------------------AT-ACTTAA--ACA-CC-CTTTACA-TGG-T--TTAT---A----CTGTCTTTTATGT----ATGGT---A---TGTT-AAAGTGT-TACTCA-TA-TGTAAA-ATATTATTTGAAA---TAT-TTTGATC------ATAT-T--------GTTTT
gi|13 : ---TA--TT--A-A--AA-A-----AATCT-CCGAATTT--GTTTTG-ATGT---GGAC-CCA-AA--TT-GATTCTTCACAAAATATTTC-----CAAATCCATTCG---CCTTGAATGGATTATG-GT------------TTTCGAGA------A-ATAAGGTAAG-AGA-CC-CCCTCCA-TGA-T--TTGT---A----TGATCCTTTCTAT----A---T---GATTTATCGAGATTGT-TACTGA-GG-TGTAAA-AGATTGTCTGGAA---AGT-TTTGATC-TA--GAT-G-T--------GTTTCAGTA--AAACATAAAATA-T-CGAAGTCAGAAAAATTATCTGCA--ATAA---A--G-T----TT--AACTTA---TTCCTGATGCTCCACATGTTACAGTGCATTATAGACA----GGATATGTTGT-TCATTTGT----------TGAA-TAGTCTC--AATATCGCCTGC--TTA-CAA-TA---G-TAT-AC--A-A-AAC---------AAGA----CAAT-TTTAAA--TTCAATGTTT-----TCAATACAAT-CTTTTAGTA-TAAGTGGG---AA-AAATAATATAACT-TTT-TCAACCAT---ATTAAAACTAAGC-TAACATA-ATA-TATACA------AGATCCATATATC-TGGAGTTTAAAAC-----TGC-----CA---TGCACCAGCATGCTGCAACCATTGAATAATCCTATAGATGATCTtaaggaattaa
gi|14 : --A--GATTCATTACAAAATGCTTC-----CAGAT---TTGGAACCCTTGAATAAATTATAATT------------TTTTGCTA------A-ATATATCAAA-ATA-CC-CCCATCA-TGA-T--TTGT---T----CTATCTTT
gi|18 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagctgttttagggttattaaccttaaccgagat--GATTCGTTGCAAAAGGTTTCTTGTTCAAA-ACAT-------CTAGAGTGAATTAAA-TT------------C--CGAGAC-----ACATAAAC-AAGCAAA-TC-CTCTCCA-TGA-T--TTGT---A----CAATCTTTTCTGT----AAG-C---AC--TGCCAAACTTGT-C--TGACAGATGTAAG-AGAATATCAGGAA---TTT-GTTGGTC-gcggtaagttgatcaaatttatcgcaataaatca
gi|20 : ttaacccatatgCAGAATGTT-------CAAAT--AATCG---A---GAATGGATTAAA-TT------------C--CGAGATTCATAA-ACAAGTTTAT-ATAACCACCGTCCA-TGA-TTTGTTC---AAGTCCGATCTTTGCTGTTAGCA-------A---TATCAAACTTATCTAAC-A-GA-CATCAA-ATACTATCAGGAA---CGT-GTTGGTC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|20 : tcAAAAATTATCAATACTATAATCGA--T-C----TT---ACTT-------CTTGTGCTTCTAGTGTTGTAATGAAATATTGATA----A---CTGT--T-TAATTTGTGTTTTGGTCTTGGGTTCTTTTC--AATACCCCCTAC--TTG-TAA-AAAAGG-AGT---------AAC---------AGAA----TAATCTTTAAA--aagatgatttccaaaaattatcaatactataatcgatcttacttcttgtgcttctagtgttgtaatgaaatattgataactgtttaatttgtgttttggtcttgggttcttttcaataccccctacttgtaaaaaaggagtaacagaataatctttaaaaagctgtatcaataaagtc
gi|5 : tccagaatgttcaaataatcgagaatggattaaattccgagattcataaacaagtttatataaccaccgtccatgatttgttcaagtccgatctttgctgttagcaatatcaaacttatctaacagacatcaaatactatcaggaacgtgttggtcaagatgatttccTTCTAATATTACAGTGTAAAATCGATA----GAACATG-TGTATCGTTTGTC----GGTCCGGGATTGCTCTC--TATGTCTCCTCCATTCA-CAAGTA---GCAGT-AA--A-A-GA-------------A----TTAT-CTTAAA--ATCAACTTTA-----TCGACAAAAT-Caagctgtatcaataaagtc
gi|5 : taatatGAATTA-TCTT--AAAATCAACT----TTATCGA-CA---A-AATCACTCA-A-AATTGTATCAACAAGAGAGGTAAT-TCTAAA--T--AATATTT-----AGAATT--AC-CTCTAA-TA--AAATCAA---AATACCAAGT-------TTTGTTAACGATACCTTGAAAATTAGT--GTACA------------ATGTG------CCAA-TATC-T------TA---C-----GGC-----CA---TG-A--------------------AATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattagtgtacaatgtgccaatatcttacggccatgaaataaaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|19 : taatatttctaatattacagtgtaaaatcgatagaacatgtgtatcgtttgtcggtccgggattgctctctatgtctcctccattcacaagtagcagtaaaaCTGC--TTG-CAA-TA---A-AAT-AC--A-A-AAT---------AAGA----TAAT-TTTAAA--TTTAATGTTC-----TCAATACAGT-TTCTGTGTA-TAAGTGGG---AA-AAATAGTATTACT-TTTGTCAACCAT---TTTAAAACTAATC-GAACAT-TATA-TA--------TGTGATCTAGATATCTT-GAGTTTAAAACTTCCATGCACCAGCA---TG-C---------TGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTT---AAAAAGTT------GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAACCTG--AGTGCCCATATAGGGGAAGAAACTGAAAGAAGAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|3 : -----TGC-----CAATATG-C---------TACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCAT-ggaaaaggaataaatgaagaaaaaatataga
gi|24 : cattcaaaagaagcagtaataaaattatcttaaaatcaactttatcaacaaaatcactcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaaaataagtgtacaatg---------TGCAAGTGTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAcattccatataaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|11 : attCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCAT-ctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TAATACTTCTAATATTACAGTGTAAGATCGATAGAACAGTCAGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAGAAGCAGTAATAAAATTATCTTAAAATCAACTCTATCAACAAAATCACTCAAAATTGTATTAACAATAGAGGTAATTCTAAATATATTGTCTAATAGTCAGTATACCAAGTTTGTTAAAGATACCTTGAAAATAAGTGTATAATGTGCCAATATGCTACGGCCATTAAATAGACCGATGTTACACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATACACAAAAAAAATACTGAGAATGCCAGCCAGTAATAGAGAGATGAAAGCAGAAGTAGACAATTGAGAGACAATTAAGAGAAAATAAAGACTGTATTTGAAAAACATTATATATACAAGTTTGAGTCGAGTAGGAGTAAACCAAAGTTAGTTTCAAAAATATTAAATGGATAAATCAAATAATTTTTTTTAAGATAATAAAGGATCTGTCTTGAATAAAGTAAGTGTTTTGTCTCACCAGGTGTTCAAAATACTTAAAGAACACGGATATATATGCATCCATATGTAGCAGACGTAAGCATGCATGTACATACAGATACCAACATACACATGCGTATATATATATACATACAGTATGATAACAAAGATCAAA
Unaligned ( gi|16 ): TCCTCATAAAGGTCACCAACTAAACAATTTATTGGAGATGTTGTAAGTAAGTTCAAAAATGTTGTTGAATATTTACCAAAATGCCTCTATCAATAGTCATAGGGTTATACGTTACTCCAAAAAATATTTTGAGATCCAAACTTGATACTAACCAAAATAGATTTATTACGAAACAATTGAAGGTATGCCATTATTTTATGAATATTACTTGACAAATATATCACGATTCCACACAAATGAATTGTTCTACTCTTTCAGTATAGAATATCAAATTTATCAGACAAATTGAGTGTATCAACAAGAACTGCATCATCTAAGTTTTGTTTAGTTAAAACACAAGATGTCATTATGAAAAAAAAAATATATTCGGTAATAAACTCTATTTTCTCTGATCCTTCTGATGTTACAATGA
Unaligned ( gi|21 ): TTTGAACCCATACGGATTCCTAACAGAATGTTGTTAGAATAGAAATTCAAAAGTTAATATTTTATTTGCTAAATATACCAAAGTACCACCACTATGGTTTGTTCTATCTCTGTGGCAAGTTTCACCTAATATGTCACTAGAGACGAGTGTATCTAAGTGAATTTCAGTGAATGTTAGAATTTCAAAATCTAAATAAAACTGCAATATTATTTTTAAAACTTATATTGCATTGTAAAAATGATATTCTATGCGTTTCTTTGTCAAGACTCTGGTAAGTTTCAATGTTCAAAGCGTCTAATAAAATCAGAATCAGAATGAACAT
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|27 ): GGTGGGTTCATTTATAGTATTGATAAGTGAGTTTAAGGTTAATATATCTTTCAGGTTACGGAATGATGAGTTGAGGTTTTCATTAAAATAATCTAGATGGACGATATTTTTAGAAGTTTAATAGGGCTTCTCAATATTTGCATCCAGGTTATTATAAAACGTGGTAGTTTTGCAGTTTTGGGACTAAA
Unaligned ( gi|28 ): GTGGGTTCATTTATAGTATTGATAAGTGGGTTTAAGGTTAATATATTTTCCAGGTAATTGAATGATGAGTTGAGTAGGTTTACATTAAAAACACATAAGAGGACAATATTTTTAGAAGTTTCATAGGCCTTCTCATTATGTGCATTCAAGTTATTGAAAAACGTGGTATCTGCAGTTTTGGGAC
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|31 ): TAAGATAAATCGTAAGGGATGATTACTGGATCAAGTATAGCATTATTTCTCGTTGGTTCAGTAATCACGTTCATTGATGAGTTTTGGTAAAGAACATTATTTAAATTATGAAAGTTATTGTTAAGCAA
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|33 ): AGATGTGTTTCAGTAAAACATAACATGTCATACTTTAAGTAATTATCTTTGATATAGTCGAAGTTATTTCTAATACGACGCATATTTGGTACAATATTGAGAAGCATTGATTGTTC
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 2 11 1111 11 1111 2222222 1111111111111111 111111111 444444444444444 222222222 1111 3333333333333333333333 33333333333333333333333 22222222 111 111111 1111111 22222 22 11 2222222222222222 22222 4444444444444444444444444444444444 333333333 111111 1 1 1 22222
lowQualScore : 0 999 6 3 6666 3 3 3 3 9999 77 1 2 6666 0 2 1 3 8 2 33 1 5 5 2 444 2 1 1 33 33 6666 1 2 2 2 22 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 7777777 2 11 2 444 9999999999999999 44 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 111111111111111 2 2 2 2 2 2 44 1 1 5 3 11 5 3 44 2 0 0 222222222 99 44 3 0 1111 44 7777777777777777777777 5 1 1 1 1 3 5 33333333333333333333333 7 44 1 0 1 77777777 1 2 2 000 33 111111 1 0 5 6 5555555 6 4 1 1 55555 00 22 6 5555555555555555 6 66 0 00000 7777777777777777777777777777777777 4 1 33 333333333 2 1 1 555555 7 3 2 1 3 3 0 77 55555 2 3
lowQualScore : . ... . . .... . . . . .... .. . . .... . . . . . . .. . . . . ... . . . .. .. .... . . . . .. ... ... .... . .. . . . .. .... . .. .. . ....... . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . . ......... . . . ............... . . . . . . .. . . . . .. . . .. . . . ......... .. .. . . .... .. ...................... . . . . . . . ....................... . .. . . . ........ . . . ... .. ...... . . . . ....... . . . . ..... .. .. . ................ . .. . ..... .................................. . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 0 333 7 2 8888 3 3 3 3 1111 88 0 0 0000 4 9 0 6 9 1 77 5 3 3 3 777 5 9 0 77 77 0000 0 7 9 7 00 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 7777777 6 99 5 444 0000000000000000 66 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 777777777777777 9 9 9 2 9 0 11 0 9 9 1 77 2 3 66 2 8 4 222222222 22 66 3 7 5555 66 5555555555555555555555 3 0 5 0 0 7 0 33333333333333333333333 2 55 0 2 0 77777777 4 7 7 111 77 111111 9 6 3 6 8888888 7 0 0 0 88888 00 77 7 0000000000000000 7 99 4 88888 9999999999999999999999999999999999 4 0 22 000000000 1 3 9 444444 1 0 5 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-TAGAGTTAATTATAAGN---ACA-T-TCT-TT-AAATTATGAAAGTT---ATTGA-TTAAGCAAATCTTCATTAAAATCNCCN---AGCAAAATNANATTNTTGGACAT--TTCGTAA-GCCTTTTCGATATTNT---TATTAAGGCTGTTA--AAA--AA-G--TCTGCATCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCA-AAT-A-GATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTCA-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAAC-GTGTTGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAGAA-GCA--N-AATAAAATAATC-TT-AAA--NTCAA--CG-----TTNTCAACAAAAT-CTTTGAGTATAAGTGG----AA-AANACAGTATTNCTTTTGTCAACCAT-----TTTAAAACTAATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC--AAATATC-T-GAGTTTAAAACG----TGC-----C---A---TG-C---------TGCGACCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCNCNTATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATA-TATTGTGCA-TAGAGTTAATTATAAGN---ACA-T-TCT-TT-AAATTATGAAAGTT---ATTGA-TTAAGCAAATCTTCATTNAAATCTCCN---AGCAAAATCANATTNTTTGACAT--TTCATAA-GCCTTTTCGATATTAT---TATTAAGGCTGTNA--AAA--AA-G--TCTNCATCA-GCTGTTTTAGGG-CTATAAAATANNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCA-AA--A-GATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-NGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTCA-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAAN-GTNTTGGTCTA-GATGTGTTTCAGT-A--AAACANAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAANATCGATAGAGTAT--G----TTGT-TCGT-TTGT--GGTCCCGGATTGNTCTCAATATCNCCTGCTTGCAANAGAATGCA--A-AATAAAATAATC-TT-AAA--TTCAA--TG-----TTNTCAATAAAAT-CTTTGAGTATAAGTGG----AA-AACATAGTATTNCTTTTGTCAACCAT-----TTTAAAACTAATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC--AAATATC-T-GAGTTTAAAAC-----TGC-----C---A---TG-A---------TGCAACCATTAAATAAACCTATGGCNGCTCTCCATGTACNGATGTCATTACCCATTGGGTAG-AAGAAAAATAACACTAAAGAAAGGATCACACAAGAGGCCACCAT-ATCACCTATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-TAGAGTTAATTATAAGT---ACG-T-TTT-TT-AGGTTATAAAAATT----TTGA-TTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGAC--TTCATTA-GCCTGTTCTATATTTT---TGTTAAAAATATAA--AAA--AA-AACTCTTTGTCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCA-AA--A-GATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAA-GTTTTGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAGAATACA--A-AATAAGATAATT-TT-AAA--TTCAA--TG-----TTCTCAATCCAAT-CTTTGAGTATAAGTGA----AA-AACACAGTATTTCTTTTGTCAACCAT-----TTTAAAACTAATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC--AAATATC-T-GAATTTAAAAC-----TGC-----C---A---TG-A---------TGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAGAGAGTTTACTAGTAGC---ACA-T-CCT-TT-AAATTGTGATAGTT---AG-GA-TTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTAC--TTC-CAATGCCTTTTCAATATTAT---TATTAAAATTGGTA--AAA--AA-T--TCTGCA-CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATAT--G-GATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC--------TGACAGATGT-AA-A-AGACT-ATCAGGAAT-TTGTTGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TAT----CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAGAAGGAG--T-AGTAAAGCAATC-TT-AAACTTTTTT--TT-----TTGTCAACAAAATCCTTTGAg
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAGTA-GCA--GTAATAGAATTATC-TT-AAA--ATCAG--CT-----TTATCAACAAAAT-Ccagtaatt
gi|11 : catt--AAATA------AGTGTACAATG----TGC-----C---AATATG-C---------TTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACacccataattgtatcaacaagagaggtaattctaaatatattgtgtaataaaatcagtatacctagttttgttaaagataccttgaaaataagtgtacaatgtgccaatatgcttcgtccattaaaaagaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|12 : cattcaaaagtagcagtaatagaattatcttaaaatcagctttatcaacaaaatcacccataattgtatcaacaagagaggtaattctaaatatattgtgtaataaaatcagtatacctagttttgttaaagataccttgaACTGTATT-TATTA---A-T-GAGTTTGTGCTTAGC---AC--T-TCTCTT-AGATTGTGATAATTCGGATTCA-TTAA----ATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAAT--TTCAAAA-GCTCTTTCAATATTAT---TGTTTATCTTATCA--AGA--AA-A--AATGCATCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCA-AAT-A-GATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC---------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCA-AA--TTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTTAC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAA-GTTTTGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCG------AAGTCAGAA--AAAT-TAT-CTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT----T----GAATAGTCTCAATATCGCCTGCTTACAATAGTATACA--A-AACAAGACAATT-TT-AAA--TTCAA--TG-----TTTTCAATACAAT-CTTTTAGTATAAGTGG----GA-AAAATAATATAACTTTT-TCAACCAT-----ATTAAAACTAAGC-TAACATAATATA-TAC-A-A-----------GAT-CC--ATATATC-TGGAGTTTAAAAC-----TGC-----C---A---TGCACCAGCATGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : AAGA---ACA-T-TCA-TA-AAATTATGAAAGTT---ATTG--TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACAT--TTCATAA-GCTTTTTCGATAATAG---TATTAAGGCTGTTA--AAG--AA-G--TCTGCATCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaCTG-TTTTAGGGTTATTAACCTTAAC-CGA-GAT-A-GATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATCccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-TAGAGTTAATTATAAGT---ACATT-TTT-TT-AGGTTATTAAAATT----TTGA-TTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC----TTCATTC-GCTTGTTCTATATTTT---TGTTAAAATTATAA--AAA--AA-ATCTCTTTGTCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCA-AAT-T-GATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---ACTAAA--CAATTTATTGGAGAT--GTTGTAA-GTAAGTTCAAAAATGT---TGTTGAATAT-TTACCAAA--AT-G--CCTCTATCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAA-AAT-A-GATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATCAGACAAATTGA--G-TGT-A-------TC-AACAAGAACTGCATCA-TCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA---ACA-T-TCT-TT-AAATTATGAAAGTT---ATTG--TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACAT--TTCGTAA-GCTTTTTCGATATTAT---TATTAAGGCTGTTA--AAG--AA-G--TCTACATCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCA-TAT-G-GATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC--------TGACAGATGT-AA-G-AGAAT-ATCAGGAAT-TTGTTGGTCt
gi|18 : ttaTTTTAATATATCCTGCTTGTAAAAGAAGGAA--T-AATAAAACAATC-TT-AAA--ATAAT--TG-----T--------AAGT-CCTTAAATATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncCTGCTTGCAATAAAATACA--A-AATAAGATAATT-TT-AAA--TTTAA--TG-----TTCTCAATACAGT-TTCTGTGTATAAGTGG----GA-AAAATAGTATTACTTTTGTCAACCAT-----TTTAAAACTAATC-GAACAT--TATA-TA---------TGT----GAT-CT--AGATATCTT-GAGTTTAAAACTTCCATGCACCAGC---A---TG-C---------TGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAtaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-TAGAGTTAATTATAAGT---ACG-T-TTT-TT-AGGTTATAAAAATT----TTGA-TTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGAC--TTCATTA-GCCTGTTCTATATTTT---TGTTAAAAATATAA--AAA--AA-AACTCTTTGTCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCA-AA--A-GATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAA-GTTTTGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAGAATACA--A-AATAAGATAATT-TT-AAA--TTCAA--TG-----TTCTCAATCCAAT-CTTTGAGTATAAGTGA----AA-AACACAGTATTTCTTTTGTCAACCAT-----TTTAAAACTAATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC--AAATATC-T-GAATTTAAAAC-----TGC-----C---A---TG-A---------TGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG-------AGAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC--------TAACAGACAT-CA-A-ATACT-ATCAGGAAC-GTGTTGGTCAA-GA--TGATT--------------------------------TCC-AA--AAAT-TAT-CAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAA-AAGGAG--T-AACAGAATAATCTTT-AAA-----AAGCTG------TATCAATAAAGT-C
gi|21 : tcT-TTGA-----AC-CCATAC--G-GATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTCA-------C--------T-AG-A--GAC-------GAGT-GTAT----CTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA---ACA-T-TCT-TT-AAATTATGAAAGTT---ATTG--TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACAT--TTCGTAA-GCTTTTTCGATATTAT---TATTAAGGCTGTTA--AAG--AA-G--TCTACATCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA---ACA-T-TCT-TT-AAATTATGAAAGTT---ATTG--TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACAT--TTCGTAA-GCTTTTTCGATATTAT---TATTAAGGCTGTTA--AAG--AA-G--TCTACATCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggta---------TGCAAGTGTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : attCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAA-AAT-A-GATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTTAC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAAT-ATTTTGATC-A-TAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|28 : TGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGT--TTCATAG-GCCTTCTC---ATTATGTGCATTCAAGTTATTG--AAA--AACG--T-GGTATCT-GCAGTTTTGGGA-Cttaaggaattaa
gi|3 : gtgggttcatttatagtattgataagtgggtttaaggttaatatattttccaggtaattgaatgaCAAAAGAA-GCA--GTAATAAAATTATC-TT-AAA--ATCAA--CT-----TTATCAACAAAAT-C
gi|3 : catt--AAATA------AGTGTACAATG----TGC-----C---AATATG-C---------TACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCAT-actcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaaaataagtgtacaatgtgccaatatgctacggccattaaatagaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatataaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|31 : cattcaaaagaagcagtaataaaattatcttaaaatcaactttatcaacaaaatcactcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaAAGA---ACA-T-TAT-TT-AAATTATGAAAGTT---ATTG--TTAAGCAAcattccatataaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCAT------ACTTTAAG--TAAT-TAT-CTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA---AAT-T-TCT-TT-AAATTATGAAAGTT---ATTG--TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACAT--TTCATAA-GCTGTTTCGATATTAT---TATTAAGGCTGTTA--AAG--AA-G--TCTGCACCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCA-GAT-A-GATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATCA-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGAC-GTGTGTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCA------AAATATGAA--AGAG-TGT-AA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAAAAT-CAG-A-AGTAAAATAAAC-AT-AAA--TTCTA--TA-----TTTTGAACAAATT-C
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G-----TGTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAGTA-GCAGTA-AA-AGAATTATC-TT-AAA--ATCAA--CT-----TTATCGACAAAAT-Cacgtagtattaa
gi|5 : ---------TACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattagtgtacaatgtgccaatatcttacggccatgaaataaaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|6 : taatatttctaatattacagtgtaaaatcgatagaacatgtgtatcgtttgtcggtccgggattgctctctatgtctcctccattcacaagtagcagtaaaagaattatcttaaaatcaactttatcgacaaaatcactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattagtgtacaatgtgccaatatctTATAGTATTG---A-TA-AGTAAGTT-TAAGGTTAATA-TATCT-TTCAGGTTATGGAA-TG---ATGAG-TTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------T--TTCATAA-GCCTTCTCAATATTCA---CATTCAGGTTATCG--AAA--AACG--TG-GTATCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCA-AATTA--ATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTCA-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTAT-CTGATTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TTT-CAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAGAA-GCA--GTAATAAAATTATC-TT-AAA--ATCAA--CT-----CTATCAACAAAAT-Cgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTT--ACATGTTTCATTG-ATCTTCTCCATACTTG---CATTTAGGTTATGA--AAACAAACG--T-TCTATCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTGT------------GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTCA-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTAT-CTGGTTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TTT-CAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAGCA-GCA--GTAATAAAACTATC-TTCAAA--TCCAA--T------TAATCAACAAAAT-CATTCA----AAATGGTATCAACAAGAGAG-ATTACTCTTATTG--TATTG---TCTAAAA--------AACA--GTAAA-CAT-A-GTGT-TGTTAAAGATACCTTAAAAATT----AGTTTACAATG----TGC-----CAATA---TG-C---------TACAGCCATTATATAGACactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaataga
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAGAA-GCA--GTAATAAAATTATC-TT-AAA--ATCAA--CT-----CTATCAACAAAAT-C
gi|8 : ACACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttAGATTGTCTGTTAC--TCC-TAATGCCTTTTCAATATTTA---TATTAAAATTAGTA--AAA--AA-A--TCTGCATCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATAT--C-AATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC--------TGACAGATGT-AG-T-AGACT-ATCAGGAAT-GTATTGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GAT----CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAGGAGGAG--C-AATAAAACAATC-TT-AAA--ATC----TGTTTTTTTGTTAATAAAATCCTTTGA-TAT---T----------------TATTGCATTTG--AACTATTCCTCTTTGCGACCAGTT----CAT-TTATAGTATAA-ATATGTAT----AA---C--AAA-----T-GAAGCGAAAAT-----T----------------------------TACAAGTATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|27 ): GGTGGGTTCATTTATAGTATTGATAAGTGAGTTTAAGGTTAATATATCTTTCAGGTTACGGAATGATGAGTTGAGGTTTTCATTAAAATAATCTAGATGGACGATATTTTTAGAAGTTTAATAGGGCTTCTCAATATTTGCATCCAGGTTATTATAAAACGTGGTAGTTTTGCAGTTTTGGGACTAAA
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 1111 3333333333333333333333 33333333333333333333333 1 222 1111111 111111 11111 222222222222 1111 22222222 111111 2222222222222222 333333 4444444444444444444444 333333333 111111 1 1 1 22222
lowQualScore : 7 222 5 8 0 2 888888 2 5 2 5 2 3 6666 5 0 1 5555 00 1 1 3 2 3 4 5 3 11 2 2 55 2 33333 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 4 3 11 5 3 44 0 0 0 222222222 99 44 3 0 1111 44 7777777777777777777777 5 1 1 1 1 3 1 33333333333333333333333 1 1 0 2 0 222 2 1 2 2 444 6666666 33 5 0 555555 5 44444 111111111111 3 4 3 1 77 2222 77 44444444 0 777777 99 5 2222222222222222 77 55 000000 3 4 9999999999999999999999 0 5 1 1 33 333333333 1 1 1 555555 1 1 1 1 3 3 0 77 55555 2 3
lowQualScore : . ... . . . . ...... . . . . . . .... . . . .... .. . . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . . . .. . . .. . . . ......... .. .. . . .... .. ...................... . . . . . . . ....................... . . . . . ... . . . . ... ....... .. . . ...... . ..... ............ . . . . .. .... .. ........ . ...... .. . ................ .. .. ...... . . ...................... . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 6 555 0 8 2 4 111111 9 7 9 7 9 5 5555 2 7 0 7777 77 0 0 6 6 8 7 0 2 22 7 1 99 5 88888 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 2 1 77 2 3 66 8 8 4 222222222 22 66 3 7 5555 66 5555555555555555555555 3 0 5 0 5 7 0 33333333333333333333333 0 0 2 7 7 333 7 4 7 7 777 9999999 77 3 1 666666 0 33333 333333333333 0 0 0 0 99 1111 99 77777777 7 444444 66 7 1111111111111111 11 55 777777 3 3 6666666666666666666666 1 5 7 1 00 000000000 0 3 9 444444 4 0 0 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-TAGAGTTAGTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTGGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA--AAA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAAT-CTTTGA-----GTA-TA-----AGTGG----AA-A----AAATAGTATTNCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC--AAATATC-T-GAGTNTANAA----CGTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-TAGAGTTAATTATAAGN-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTGATTAAGCAAATCTTCATTAAAATCNCCN---AGCAAAATNANATTNTTGGACATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGCTGTTA--AAA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAAT-CTTTGA-----GTA-TA-----AGTGG----AA-A----ANACAGTATTNCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC--AAATATC-T-GAGTTTAAAA----CGTGC-----C---A---TGCTGCGACCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCNCNTATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-TAGAGTTAATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA--AAA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAAT-CTTTGA-----GTA-TA-----AGTGA----AA-A----ACACAGTATTTCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC--AAATATC-T-GAATTTAAAA----C-TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAGAGAGTTTACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA--AAA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---------TGACAGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TAT----CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TT-GTCAACAAAATCCTTTGA-----g
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TT-ATCAACAAAAT-Ccagtaatt
gi|11 : catt--AAATA------AGTGTACAA----TGTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACacccataattgtatcaacaagagaggtaattctaaatatattgtgtaataaaatcagtatacctagttttgttaaagataccttgaaaataagtgtacaatgtgccaatatgcttcgtccattaaaaagaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|12 : cattcaaaagtagcagtaatagaattatcttaaaatcagctttatcaacaaaatcacccataattgtatcaacaagagaggtaattctaaatatattgtgtaataaaatcagtatacctagttttgttaaagataccttgaACTGTAT-TTATTA---A-T-GAGTTTGTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATTAA----ATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA--AGA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-AC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCG------AAGTCAGAA--AAAT-TAT-CTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT-------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TT-TTCAATACAAT-CTTTTA-----GTA-TA-----AGTGG----GA-A----AAATAATATAACTT--TT-TCA----ACCA--T-----A--TTAAAACTA-AGC-TAACATAATATA-TAC-A-A-----------GAT-CC--ATATATC-TGGAGTTTAAAACTGCCATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA--AAG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-TAGAGTTAATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA--AAA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAATAT-TTACCAAA-AT-G---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-AGACAAATTGA--G-TGT-A-------TC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA--AAG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---------TGACAGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTCt
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--AT-AA-------TT-GT-----AAGT-CCTTAA-----ATA-Tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TT-CTCAATACAGT-TTCTGT-----GTA-TA-----AGTGG----GA-A----AAATAGTATTACTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATC-GAACAT--TATA-TA---------TGT----GAT-CT--AGATATCTT-GAGTTTAAAACTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAtaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-TAGAGTTAATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA--AAA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAAT-CTTTGA-----GTA-TA-----AGTGA----AA-A----ACACAGTATTTCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC--AAATATC-T-GAATTTAAAA----C-TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---------TAACAGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTCAA-GA--TGATT--------------------------------TCC-AA--AAAT-TAT-CAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GT-ATCAATAAAGT-C
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-------C--------T-AG-A--GAC-------GA--GTGT---ATCTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA--AAG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA--AAG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTGCAAGTGTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : attCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-AC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC-A-TAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-TA-AGTGAGTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTAT-AAA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-TA-AGTGGGTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG--AAA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TT-ATCAACAAAAT-C
gi|3 : catt--AAATA------AGTGTACAA----TGTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATactcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaaaataagtgtacaatgtgccaatatgctacggccattaaatagaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatataaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|31 : cattcaaaagaagcagtaataaaattatcttaaaatcaactttatcaacaaaatcactcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCAT------ACTTTAAG--TAAT-TAT-CTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA--AAG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCA------AAATATGAA--AGAG-TGT-AA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TT-TTGAACAAATT-C
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G-----TGTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCAGT-AA-AAGAATTATC-TT-AAA--ATCAACT-----TT-ATCGACAAAAT-Cacgtagtattaa
gi|5 : AGTGTACAA----TGTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattagtgtacaatgtgccaatatcttacggccatgaaataaaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|6 : taatatttctaatattacagtgtaaaatcgatagaacatgtgtatcgtttgtcggtccgggattgctctctatgtctcctccattcacaagtagcagtaaaagaattatcttaaaatcaactttatcgacaaaatcactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattTATAGTATTG---A-TA-AGTAAGTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG--AAA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TTT-CAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAAT-Cgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|6 : ctggtgggttcatt--AAATA------AGTGTATAA----TGTGC-----C---AATATGCTACGGCCATTAAATAGAactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaataga
gi|7 : ctggtgggttcatttatagtattgataagtaagtttaaggttaatatatctttcaggttatggaatgatgagtttagaaggttttcattaaaatcacctaggacgacgatatttttcataagccttctcaatattcacattcaggttatcgaaaaacgtggtatctgcggttttgggactatagaacacaccttatagtatattttcatttttgattttgacatttatccaaattaattcgttataaaatatttccaagtcatttcgcctggaatgaataacactatttgaaacataaataagtatcccccctccatgattagaacggtcctttcaataaaatatatcaaagttttcattaagtattaaagagtcatttggtatctgattatcaaggtgagtttcataacaaacaaagaatatcatggtctaaaaggttttcaacaataaaacttatcattataatttattatttataatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA--AAACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TTT-CAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGT-AA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAAT-CATTCA----------A-----AATGGTATCAACA----AGAGAG-ATTACTC--TTATTG------TA--TTG---T--CTAAAA---------AACA--GTAAA-CAT-A-GTGT-TGTTAAAGATACCTTAAAAATT----AGTTTACAA----TGTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAAT-CACTCAAAATTGTATTAACAATAGAGG----TA-ATTCTAAATA-TATTGTCTAATAGTCAGTATACCAAGT-----TTGTTAAAGATACCTT-GAAAAT-AAGTG-TAT-A-ATGTG-----------CC---AATAT-------------------------------------GCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaTCCTAATGCCTTTTCAATATTTATATTAAAATTAGTA--AAA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---------TGACAGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GAT----CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTT-GTTAATAAAATCCTTTGA------TA-T--------T--------------------TATTGCAT--TTG--A----ACTA--TTCCTCT--TTGCGACCA-GTT----CAT-TTATAGTATAA-ATATGTAT----AA---C--AAA-----T-GAAGCGAAAA----T-------------------TTACAAGTATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 3333333333333333333333 33333333333333333333333 1 222 1111111 444444444444444444444444444444444 11 2222 33333333333 222222 6666666666666666666666666666666666666666666666666666666666666666666 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 3 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 44 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 77 11 5 3 44 0 0 0 222222222 99 44 3 44 888 44 7777777777777777777777 5 1 1 1 1 3 1 33333333333333333333333 1 1 0 2 0 222 2 1 2 2 444 6666666 33 5 0 1 444444444444444444444444444444444 1 0 7 1 33 1111 22222222222 2 000000 77 5 5 6666666666666666666666666666666666666666666666666666666666666666666 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . .. .. . . .. . . . ......... .. .. . .. ... .. ...................... . . . . . . . ....................... . . . . . ... . . . . ... ....... .. . . . ................................. . . . . .. .... ........... . ...... .. . . ................................................................... . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 4 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 77 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 33 77 2 3 66 8 8 4 222222222 22 66 3 00 222 66 5555555555555555555555 3 0 5 0 5 7 0 33333333333333333333333 0 0 2 7 7 333 7 4 7 7 777 9999999 77 3 3 6 000000000000000000000000000000000 9 8 6 0 88 2222 11111111111 5 555555 22 0 0 5555555555555555555555555555555555555555555555555555555555555555555 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-TGA-------AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTC-NAGATGTGTTTCAG-TA--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAAT-CTTTGA-----GTA-TA-----AGTGG----NA-A----AAATAGTATTGCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC--AAAT--ATC-T-G--AGTTTACAA----CGTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTGGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-TGA-------AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTC-NAGATGTGTTTCAG-TA--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAAT-CTTTGA-----GTA-TA-----AGTGG----AA-A----AAATAGTATTNCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC--AAAT--ATC-T-G--AGTNTANAA----CGTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-TGA-------AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTC-TCGATTTGTTTTAG-TA--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAAT-CTTTGA-----GTA-TA-----AGTGA----AA-A----ACACAGTATTTCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC--AAAT--ATC-T-G--AATTTAAAA----C-TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---TGAC------AGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTC-AAGATGAGTTTCTG-AA--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TA-T---CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TT-GTCAACAAAATCCTTTGA-----g
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TT-ATCAACAAAAT-Ccagtaatt
gi|11 : catt--AAAT--A--------AGTGTACAA----TGTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACacccataattgtatcaacaagagaggtaattctaaatatattgtgtaataaaatcagtatacctagttttgttaaagataccttgaaaataagtgtacaatgtgccaatatgcttcgtccattaaaaagaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|12 : cattcaaaagtagcagtaatagaattatcttaaaatcagctttatcaacaaaatcacccataattgtatcaacaagagaggtaattctaaatatattgtgtaataaaatcagtatacctagttttgttaaagataccttgaACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-ACTGA-------GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATC-TAGATGTGTTTCAG-TA--AAACATAAAATATCG------AAGTCAGAA--AAAT-TA-TCTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT-------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TT-TTCAATACAAT-CTTTTA-----GTA-TA-----AGTGG----GA-A----AAATAATATAACTT--TT-TCA----ACCA--T-----A--TTAAAACTA-AGC-TAACATAATATA-TAC-A-A-----------GAT-CC--ATAT--ATC-TGG--AGTTTAAAACTGCCATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGA---A-TA-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-A--GACAAATTGAG-TGT--------ATC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---TGAC------AGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTC-t
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--AT-AA-------TT-GT-----AAGT-CCTTAA-----ATA-Tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TT-CTCAATACAGT-TTCTGT-----GTA-TA-----AGTGG----GA-A----AAATAGTATTACTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATC-GAACAT--TATA-TA---------TGT----GAT-CT--AGAT--ATCTT-G--AGTTTAAAACTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAtaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-TGA-------AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTC-TCGATTTGTTTTAG-TA--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAAT-CTTTGA-----GTA-TA-----AGTGA----AA-A----ACACAGTATTTCTT--TTGTCA----ACCA--T-----T--TTAAAACTA-ATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC--AAAT--ATC-T-G--AATTTAAAA----C-TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---TAAC------AGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTC-AAGA--TGATT--------------------------------TCC-AA--AAAT-TA-TCAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GT-ATCAATAAAGT-C
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-C--------------T-AG-A--GAC-------GA--GTGT---ATC-TAAGTGAATTTCAG-TG--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-ACTCA-------TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC--ATAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TT-ATCAACAAAAT-C
gi|3 : catt--AAAT--A--------AGTGTACAA----TGTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATactcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaaaataagtgtacaatgtgccaatatgctacggccattaaatagaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatataaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|31 : cattcaaaagaagcagtaataaaattatcttaaaatcaactttatcaacaaaatcactcaaaattgtatcaacaagagcggtaattctaaatatattgtctaataaaatcagtataccaagttttgttaaagataccttgaAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaAGATGTGTTTCAG-TA--AAACATAACATGTCAT------ACTTTAAG--TAAT-TA-TCTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-CTA-------AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATT-TAAGTGCGTTTCAG-TA--AATGATACAATATCA------AAATATGAA--AGAG-TG-TAA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TT-TTGAACAAATT-C
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G-----TGTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCAGT-AA-AAGAATTATC-TT-AAA--ATCAACT-----TT-ATCGACAAAAT-Cacgtagtattaa
gi|5 : --AGTGTACAA----TGTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattagtgtacaatgtgccaatatcttacggccatgaaataaaccgatggcggctctccatgtacagatgtcattacccattgggtagtaacactaaagaaaggatcacacaagaggccaccatcattccatatacatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|6 : taatatttctaatattacagtgtaaaatcgatagaacatgtgtatcgtttgtcggtccgggattgctctctatgtctcctccattcacaagtagcagtaaaagaattatcttaaaatcaactttatcgacaaaatcactcaaaattgtatcaacaagagaggtaattctaaataatatttagaattacctctaataaaatcaaaataccaagttttgttaacgataccttgaaaattTATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-TTA-------AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATC-AAGGTGAGTTTCA--TAACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TT-TCAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAAT-CACTCAAAATTGTATTAACAATAGAGG----TA-ATTCTAAATA-TATTGTCTAATAGTCAGTATACCAAGT-----TTGTTAAAGATACCTT-GAAAAT-AAGTG-TAT-A-ATGTG-----------CC--AA------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-TTA-------AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATC-AAGATGAGTTTCAG-TA--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TT-TCAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGT-AA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAAT-CATTCA----------A-----AATGGTATCAACA----AGAGAG-ATTACTC--TTATTG------TA--TTG---T--CTAAAA---------AACA--GTAAA-CAT-A-GTGT-TGTTAAAGATACCTTAAAA--ATT------AGTTTACAA----TGTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAAT-CACTCAAAATTGTATTAACAATAGAGG----TA-ATTCTAAATA-TATTGTCTAATAGTCAGTATACCAAGT-----TTGTTAAAGATACCTT-GAAAAT-AAGTG-TAT-A-ATGTG-----------CC--AA------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---TGAC------AGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTC-AAGATGTGTTT-AT-GA--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GA-T---CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTT-GTTAATAAAATCCTTTGA------TA-T--------T--------------------TATTGCAT--TTG--A----ACTA--TTCCTCT--TTGCGACCA-GTT----CAT-TTATAGTATAA-ATATGTAT----AA---C--AAATGAAGC---GAAAATTTACAA-----GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 3333333333333333333333 33333333333333333333333 1 222 1111111 111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 44 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 77 11 5 3 44 0 0 0 222222222 99 44 3 44 888 44 7777777777777777777777 5 1 1 1 1 3 1 33333333333333333333333 1 1 0 2 0 222 2 1 2 2 444 6666666 33 444 8888888 000 333 4 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . .. .. . . .. . . . ......... .. .. . .. ... .. ...................... . . . . . . . ....................... . . . . . ... . . . . ... ....... .. ... ....... ... ... . ............................................................................................................................................................................................ . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 77 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 33 77 2 3 66 8 8 4 222222222 22 66 3 00 222 66 5555555555555555555555 3 0 5 0 5 7 0 33333333333333333333333 0 0 2 7 7 333 7 4 7 7 777 9999999 77 777 7777777 000 888 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-TGA-------AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTC-NAGATGTGTTTCAG-TA--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NT---CAA-------CAAAAT---CNT-TNA-----GTA-T------A-----AGNGGTA-----ATTCTAAATAGTATTG-CTT--TT---GTCA----ACCA--T-----T---T-TAA-AACTA-ATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC---G--AGTTTANAA----CGTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-TGA-------AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTC-NAGATGTGTTTCAG-TA--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NT---CAA-------CAAAAT---CTT-TGA-----GTA-T------A-----AGTGGNA-----A----AAATAGTATTG-CTT--TT---GTCA----ACCA--T-----T---T-TAA-AACTA-ATC-GAACAT-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC-T-G--AGTTTACAA----CGTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-TGA-------AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTC-TCGATTTGTTTTAG-TA--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CT---CAA-------TCCAAT---CTT-TGA-----GTA-T------A-----AGTGAAA-----A----ACACAGTATTT-CTT--TT---GTCA----ACCA--T-----T---T-TAA-AACTA-ATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATC-T-G--AATTTAAAA----C-TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---TGAC------AGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTC-AAGATGAGTTTCTG-AA--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TA-T---CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TT-GT---CAA-------CAAAATC--CTT-TGA-----g
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TT-AT---CAA-------CAAAATCACCCA-TAATT---GTA-TCAACAAG-----AGAGGTA-----ATTCTAAATA-TATTG-------T---GT-A----A-----------------TAA-AATCA-GT-----------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A--------AGTGTACAA----TGTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACcagtaatt
gi|12 : cattACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-ACTGA-------GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATC-TAGATGTGTTTCAG-TA--AAACATAAAATATCG------AAGTCAGAA--AAAT-TA-TCTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT-------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TT-TT---CAA-------TACAAT---CTT-TTA-----GTA-T------A-----AGTGGGA-----A----AAATAATATAA-CTT--TT----TCA----ACCA--T-----A---T-TAA-AACTA-AGC-TAACATAATATA-TAC-A-A-----------GAT-CC----ATAT--ATC-TGG--AGTTTAAAACTGCCATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGA---A-TA-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-A--GACAAATTGAG-TGT--------ATC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---TGAC------AGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTC-t
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--AT-AA-------TT-GT---------------AAGT---CCT-TAA-----ATA-T------gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TT-CT---CAA-------TACAGT---TTC-TGT-----GTA-T------A-----AGTGGGA-----A----AAATAGTATTA-CTT--TT---GTCA----ACCA--T-----T---T-TAA-AACTA-ATC-GAACAT--TATA-TA---------TGT----GAT-CT----AGAT--ATCTT-G--AGTTTAAAACTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAtaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-TGA-------AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTC-TCGATTTGTTTTAG-TA--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CT---CAA-------TCCAAT---CTT-TGA-----GTA-T------A-----AGTGAAA-----A----ACACAGTATTT-CTT--TT---GTCA----ACCA--T-----T---T-TAA-AACTA-ATCGGAACAT-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATC-T-G--AATTTAAAA----C-TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---TAAC------AGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTC-AAGA--TGATT--------------------------------TCC-AA--AAAT-TA-TCAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GT-AT---CAA-------TAAAGT---C
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-C--------------T-AG-A--GAC-------GA--GTGT---ATC-TAAGTGAATTTCAG-TG--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-ACTCA-------TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC--ATAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TT-AT---CAA-------CAAAAT---CAC-TCAAAATTGTA-TCAACAAG-----AGCGGTA-----ATTCTAAATA-TATTGTCTA--ATAAAATCAGTATACCAAGT-----TTTGT-TAA-AGATACCTT-GAAAAT-AAGTG-TAC-A-ATGTG-----------CC-----AAT--A---------------------------------------TGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATAT
gi|31 : cattAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaAGATGTGTTTCAG-TA--AAACATAACATGTCAT------ACTTTAAG--TAAT-TA-TCTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-CTA-------AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATT-TAAGTGCGTTTCAG-TA--AATGATACAATATCA------AAATATGAA--AGAG-TG-TAA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TT-TT---GAA-------CAAATT---C
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G----T-GTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCA-GTAA-AAGAATTATC-TT-AAA--ATCAACT-----TT-ATCGACAAAATCACTCAAAAT---TGTATCA-----ACA-A------G-----AGAGGTA-----ATTCTAAATAATAT-----T--TA---G--A----ATTA--C-----C---TCTAATAA--A-ATC-AAA------ATA-C-C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT------AGTGTACAA----TGTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAacgtagtattaa
gi|6 : TATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-TTA-------AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATC-AAGGTGAGTTTCA--TAACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TT-TCAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-AT---CAA-------CAAAAT---CAC-TCAAAATTGTATT------AACAATAGAGGTA-----ATTCTAAATA-TATTG-TCTAATA---GTCAGTATACCAAGT-----TTG-T-TAA-AGATACCTT-GAAAAT-AAGTG-TAT-A-ATGTG-----------CC----AA------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-TTA-------AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATC-AAGATGAGTTTCAG-TA--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TT-TCAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGT-AA-TAAAACTATC-TTCAAA--TCCAA-------TTAAT---CAA-------CAAAAT---CAT-TCA----------------A-----AATGGTATCAACA----AGAGAG-ATTA-CTC--TT---ATTG------TA--TTG---T---C-TAA-AA---------AACA--GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT------AGTTTACAA----TGTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----CT-AT---CAA-------CAAAAT---CAC-TCAAAATTGTATT------AACAATAGAGGTA-----ATTCTAAATA-TATTG-TCTAATA---GTCAGTATACCAAGT-----TTG-T-TAA-AGATACCTT-GAAAAT-AAGTG-TAT-A-ATGTG-----------CC----AA------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---TGAC------AGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTC-AAGATGTGTTT-AT-GA--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GA-T---CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTT-GT---TAA-------TAAAATC--CTT-TGA------TA-T--------------T--------------------TATTG-CAT--TT---G--A----ACTA--TTCCTCT---T-TGC-GACCA-GTT----CAT-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC---GAAAATTTACAA-----GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 1111 3333333333333333333333 33333333333333333333333 1 222 1111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 4 3 11 5 3 44 0 0 0 222222222 99 44 3 0 1111 44 7777777777777777777777 5 1 1 1 1 3 1 33333333333333333333333 1 1 0 2 0 222 2 1 2 2 444 6666666 33 1 6666 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . . . .. . . .. . . . ......... .. .. . . .... .. ...................... . . . . . . . ....................... . . . . . ... . . . . ... ....... .. . .... ............................................................................................................................................................................................ . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 2 1 77 2 3 66 8 8 4 222222222 22 66 3 7 5555 66 5555555555555555555555 3 0 5 0 5 7 0 33333333333333333333333 0 0 2 7 7 333 7 4 7 7 777 9999999 77 0 0000 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAATCNCT---CA-----GTA-T------A-----AGNGGTAATTCTA-AATAG-TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAATCNTT---NA-----GTA-T------A-----AGNGGTAATTCTA-AATAG-TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTANAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAATCTTT---GA-----GTA-T------A-----AGTGAAAA----A-CACAG-TATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---------TGACAGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TAT----CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TT-GTCAACAAAATCCTTTGACA-----GTA-g
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TT-ATCAACAAAATCACC---CATAATTGTA-TCAACAAG-----AGAGGTAATTCTA-AATA--TATT--G------TGT--A----A---------------TAA-AATCA-GT--------------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACatt
gi|12 : cattACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-AC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCG------AAGTCAGAA--AAAT-TAT-CTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT-------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TT-TTCAATACAATCTTT---TA-----GTA-T------A-----AGTGGGAA----A-AATAA-TATA--ACTT--TT-TC-A----ACCA--T-----A--TTAA-AACTA-AGC-TAACA---TAATATA-TAC-A-A-----------GAT-CC----ATAT--ATCTGG--AGTTTAAAACTGCC----ATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-AGACAAATTGA--G-TGT-A-------TC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---------TGACAGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTCt
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--AT-AA-------TT-GT-----AAGTCCTT---AA-----ATA-T------gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TT-CTCAATACAGTTTCT---GT-----GTA-T------A-----AGTGGGAA----A-AATAG-TATT--ACTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T----TA-TAT-A------TGT----GAT-CT----AGAT--ATCTTG--AGTTTAAAA----CTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAtaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAATCTTT---GA-----GTA-T------A-----AGTGAAAA----A-CACAG-TATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---------TAACAGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTCAA-GA--TGATT--------------------------------TCC-AA--AAAT-TAT-CAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GT-ATCAATAAAGTC
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-------C--------T-AG-A--GAC-------GA--GTGT---ATCTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-AC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC-A-TAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TT-ATCAACAAAATCACT---CAAAATTGTA-TCAACAAG-----AGCGGTAATTCTA-AATA--TAT----------TGTCTA----A---------------TAA-AATCA-GTA-TACCAAGTT-TTGT--TAA-AGATACCT-T----GA--------AAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATAT
gi|31 : cattAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCAT------ACTTTAAG--TAAT-TAT-CTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCA------AAATATGAA--AGAG-TGT-AA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TT-TTGAACAAATTCACG---TA-----GTA-T------
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G----T-GTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCA-GTAA-AAGAATTATC-TT-AAA--ATCAACT-----TT-ATCGACAAAATCACT---CAAAATTGTA-TCAACAAG-----AGAGGTAATTCTA-AATAA-TATTTAGAAT--T----------ACC---------T--CTAATAA--A-ATC-AAA---------ATA-C-C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT-----AGTGTACAA----T----GTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAtaa
gi|6 : TATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TTT-CAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAATCACT---CAAAATTGTATT------AACAATAGAGGTAATTCTA-AATA--TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TTT-CAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGT-AA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAATCATT---CA----------------A-----AATGGTA--TCAACAAGAGAGATT--ACTC--TTATT-G------TA--TTG---T--CTAA-AA---------AACA-----GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT-----AGTTTACAA----T----GTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAATCACT---CAAAATTGTATT------AACAATAGAGGTAATTCTA-AATA--TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---------TGACAGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GAT----CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTT-GTTAATAAAATCCTT---TG-----ATA-T-----------------T--------------TATT--GCAT--TTG---A----ACTA--TTCCTCT--TTGC-GACCA-GTT----CA---T-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC--GAAAATTTACAA---------GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 1111 3333333333333333333333 33333333333333333333333 1 222 1111111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 4 3 11 5 3 44 0 0 0 222222222 99 44 3 0 1111 44 7777777777777777777777 5 1 1 1 1 3 1 33333333333333333333333 1 1 0 2 0 222 2 1 2 2 444 4444444 33 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . . . .. . . .. . . . ......... .. .. . . .... .. ...................... . . . . . . . ....................... . . . . . ... . . . . ... ....... .. . ................................................................................................................................................................................................. . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 2 1 77 2 3 66 8 8 4 222222222 22 66 3 7 5555 66 5555555555555555555555 3 0 5 0 5 7 0 33333333333333333333333 0 0 2 7 7 333 7 4 7 7 777 1111111 99 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAATCNCT---CA-AATTGTA-T------A-----AGNGGTAATTCTA-AATAG-TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAATCNCT---CA-----GTA-T------A-----AGNGGTAATTCTA-AATAG-TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAATCTTT---GA-----GTA-T------A-----AGTGAAAA----A-CACAG-TATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---------TGACAGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TAT----CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TT-GTCAACAAAATCCTTTGACA-----GTA-g
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TT-ATCAACAAAATCACC---CATAATTGTA-TCAACAAG-----AGAGGTAATTCTA-AATA--TATT--G------TGT--A----A---------------TAA-AATCA-GT--------------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACatt
gi|12 : cattACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-AC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCG------AAGTCAGAA--AAAT-TAT-CTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT-------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TT-TTCAATACAATCTTT---TA-----GTA-T------A-----AGTGGGAA----A-AATAA-TATA--ACTT--TT-TC-A----ACCA--T-----A--TTAA-AACTA-AGC-TAACA---TAATATA-TAC-A-A-----------GAT-CC----ATAT--ATCTGG--AGTTTAAAACTGCC----ATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-AGACAAATTGA--G-TGT-A-------TC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---------TGACAGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTCt
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TT-CTCAATACAGTTTCT---GT-----GTA-T------A-----AGTGGGAA----A-AATAG-TATT--ACTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T----TA-TAT-A------TGT----GAT-CT----AGAT--ATCTTG--AGTTTAAAA----CTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAaattgtaagtccttaaatattaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAATCTTT---GA-----GTA-T------A-----AGTGAAAA----A-CACAG-TATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---------TAACAGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTCAA-GA--TGATT--------------------------------TCC-AA--AAAT-TAT-CAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GT-ATCAATAAAGTC
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-------C--------T-AG-A--GAC-------GA--GTGT---ATCTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-AC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC-A-TAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TT-ATCAACAAAATCACT---CAAAATTGTA-TCAACAAG-----AGCGGTAATTCTA-AATA--TAT----------TGTCTA----A---------------TAA-AATCA-GTA-TACCAAGTT-TTGT--TAA-AGATACCT-T----GA--------AAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATAT
gi|31 : cattAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCAT------ACTTTAAG--TAAT-TAT-CTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCA------AAATATGAA--AGAG-TGT-AA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TT-TTGAACAAATTCACG---TA-----GTA-T------
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G----T-GTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCA-GTAA-AAGAATTATC-TT-AAA--ATCAACT-----TT-ATCGACAAAATCACT---CAAAATTGTA-TCAACAAG-----AGAGGTAATTCTA-AATAA-TATTTAGAAT--T----------ACC---------T--CTAATAA--A-ATC-AAA---------ATA-C-C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT-----AGTGTACAA----T----GTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAtaa
gi|6 : TATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TTT-CAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAATCACT---CAAAATTGTATT------AACAATAGAGGTAATTCTA-AATA--TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TTT-CAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGT-AA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAATCATT---CA----------------A-----AATGGTA--TCAACAAGAGAGATT--ACTC--TTATT-G------TA--TTG---T--CTAA-AA---------AACA-----GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT-----AGTTTACAA----T----GTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAATCACT---CAAAATTGTATT------AACAATAGAGGTAATTCTA-AATA--TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---------TGACAGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GAT----CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTT-GTTAATAAAATCCTT-----------------------------TGAT-ATT----------TATT--GCAT--TTG---A----ACTA--TTCCTCT--TTGC-GACCA-GTT----CA---T-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC--GAAAATTTACAA---------GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 1111 3333333333333333333333 33333333333333333333333 1 222 1111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 4 3 11 5 3 44 0 0 0 222222222 99 44 3 0 1111 44 7777777777777777777777 5 1 1 1 1 3 1 33333333333333333333333 1 1 0 2 0 222 2 1 2 2 444 4444444 33 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . . . .. . . .. . . . ......... .. .. . . .... .. ...................... . . . . . . . ....................... . . . . . ... . . . . ... ....... .. . .............................................................................................................................................................................................. . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 2 1 77 2 3 66 8 8 4 222222222 22 66 3 7 5555 66 5555555555555555555555 3 0 5 0 5 7 0 33333333333333333333333 0 0 2 7 7 333 7 4 7 7 777 1111111 99 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAATCACTC-A-AA-TTGTA-TC--C--A-----AGNGGTAATTCTAAATA-TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GGTCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TT-NTCAACAAAATCNCTC-A-AA-TTGTA-T------A-----AGNGGTAATTCTAAATAGTATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAATCTTTG-A------GTA-T------A-----AGTGAAAA----ACACAGTATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---------TGACAGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TAT----CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TT-GTCAACAAAATCCTTg
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TT-ATCAACAAAATCACCC-ATAA-TTGTA-TCAACAAG-----AGAGGTAATTCTAAATA-TATT--G------TGT--A----A---------------TAA-AATCA-GT--------------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACtgacagtaatt
gi|12 : cattACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-AC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCG------AAGTCAGAA--AAAT-TAT-CTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT-------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TT-TTCAATACAATCTTTT-A------GTA-T------A-----AGTGGGAA----AAATAATATA--ACTT--TT-TC-A----ACCA--T-----A--TTAA-AACTA-AGC-TAACA---TAATATA-TAC-A-A-----------GAT-CC----ATAT--ATCTGG--AGTTTAAAACTGCC----ATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-AGACAAATTGA--G-TGT-A-------TC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---------TGACAGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTCt
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TT-CTCAATACAGTTTCTG-------TGTA-T------A-----AGTGGGAA----AAATAGTATT--ACTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T----TA-TAT-A------TGT----GAT-CT----AGAT--ATCTTG--AGTTTAAAA----CTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAaattgtaagtccttaaatattaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GGGCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TT-CTCAATCCAATCTTTG-A------GTA-T------A-----AGTGAAAA----ACACAGTATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---------TAACAGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTCAA-GA--TGATT--------------------------------TCC-AA--AAAT-TAT-CAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GGTCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GT-ATCAATAAAGTC
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-------C--------T-AG-A--GAC-------GA--GTGT---ATCTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-AC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC-A-TAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TT-ATCAACAAAATCACTC-A-AAATTGTA-TCAACAAG-----AGCGGTAATTCTAAATA-TAT----------TGTCTA----A---------------TAA-AATCA-GTA-TACCAAGTT-TTGT--TAA-AGATACCT-T----GA--------AAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATAT
gi|31 : cattAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCAT------ACTTTAAG--TAAT-TAT-CTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCA------AAATATGAA--AGAG-TGT-AA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGGACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TT-TTGAACAAATTCAC
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G----T-GTATCGT-TTGTC-GGTCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCA-GTAA-AAGAATTATC-TT-AAA--ATCAACT-----TT-ATCGACAAAATCACTC-A-AAATTGTA-TCAACAAG-----AGAGGTAATTCTAAATAATATTTAGAAT--T----------ACC---------T--CTAATAA--A-ATC-AAA---------ATA-C-C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT-----AGTGTACAA----T----GTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAgtagtattaa
gi|6 : TATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TTT-CAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAATCACTCAA-AA-TTGTATT------AACAATAGAGGTAATTCTAAATA-TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TTT-CAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGTG-GGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGT-AA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAATCATTCAA-AA-TGGTA-TCAACAAG-----AGAGATTACTCT------TATT--G-TA--TTGTC----------------------TAA-AA---------AACA-----GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT-----AGTTTACAA----T----GTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AGTCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----CT-ATCAACAAAATCACTCAA-AA-TTGTATT------AACAATAGAGGTAATTCTAAATA-TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---------TGACAGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GAT----CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GGTCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTT-GTTAATAAAATC-CT-------TTG-A-T-------------------ATT--------TATT--GCAT--TTG---A----ACTA--TTCCTCT--TTGC-GACCA-GTT----CA---T-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC--GAAAATTTACAA---------GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 111111111 4444444444444444 222222222 3333333333333333333333 22222222222222222222222 1 222 1111111 3333333 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 44 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 999999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 77 11 5 3 44 0 0 0 222222222 99 44 3 44 888 44 7777777777777777777777 5 1 1 1 1 3 1 99999999999999999999999 3 1 1 0 2 0 222 2 1 2 2 444 4444444 33 3 2222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. .. . .......... . . . .. . . . .. . ....... . . ......... . . . ................ . . . . . . .. . .. .. . . .. . . . ......... .. .. . .. ... .. ...................... . . . . . . . ....................... . . . . . . ... . . . . ... ....... .. . ....... .................................................................................................................................................................................. . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 77 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 777777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 33 77 2 3 66 8 8 4 222222222 22 66 3 00 222 66 5555555555555555555555 3 0 5 0 5 7 0 77777777777777777777777 6 0 0 2 7 7 333 7 4 7 7 777 1111111 99 8 9999999 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-TGA-------AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTC-NAGATGTGTTTCAG-TA--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTC-A-AA-TTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-A-G-T-A-T-ATCGAANTTGTC-A-TGA-------AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTC-NAGATGTGTTTCAG-TA--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTC-A-AA-TTGTATC--CA--AGNG--GTA--ATTCTAAAT-A---TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-TGA-------AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTC-TCGATTTGTTTTAG-TA--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GG-GCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TTC-TCAATCCAATCTTTG-A------GTAT----A--AGTG----A--A----AAAC-ACAGTATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-A-G-CAA-T-GTCAAACTTGTC---TGAC------AGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTC-AAGATGAGTTTCTG-AA--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TA-T---CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GG-TCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TTG-TCAACAAAATCg
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TTA-TCAACAAAATCACCC-ATAA-TTGTATCAACA--AGAGAGGTA--ATTCTAAAT-A---TATT--G------TGT--A----A---------------TAA-AATCA-GT--------------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACctttgacagtaatt
gi|12 : cattACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATG-G-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-T-GAT-T-T-ATCGAGATTGTT-ACTGA-------GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATC-TAGATGTGTTTCAG-TA--AAACATAAAATATCG------AAGTCAGAA--AAAT-TA-TCTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT--------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TTT-TCAATACAATCTTTT-A------GTAT----A--AGTG--GGA--A----AAATAA---TATA--ACTT--TT-TC-A----ACCA--T-----A--TTAA-AACTA-AGC-TAACA---TAATATA-TAC-A-A-----------GAT-CC----ATAT--ATCTGG--AGTTTAAAACTGCC----ATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-A-G-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGA---A-TA-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATA-G-A-A-T-ATCAAATTTATC-A--GACAAATTGAG-TGT--------ATC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-A-G-C-ACT-GCCAAACTTGTC---TGAC------AGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTC-t
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TTC-TCAATACAGTTTCTG-------TGTAT----A--AGTG--GGA--A----AAAT-AG--TATT--ACTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T----TA-TAT-A------TGT----GAT-CT----AGAT--ATCTTG--AGTTTAAAA----CTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAaattgtaagtccttaaatattaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A-----T-A-T-ATCGAGATTGTTAA-TGA-------AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTC-TCGATTTGTTTTAG-TA--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TA-TCAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GG-GCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TTC-TCAATCCAATCTTTG-A------GTAT----A--AGTG----A--A----AAAC-ACAGTATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-A-G-C-AAT-ATCAAACTTATC---TAAC------AGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTC-AAGA--TGATT--------------------------------TCC-AA--AAAT-TA-TCAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GG-TCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GTA-TCAATAAAGTC
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-A-G-T-T-TCACCTAATATGTC-A-C--------------T-AG-A--GAC-------GA--GTGT---ATC-TAAGTGAATTTCAG-TG--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATG-G-T-A-T-GTTAAAG-TGTT-ACTCA-------TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC--ATAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TTA-TCAACAAAATCACTC-A-AAATTGTATCAACA--AGAGCGGTA--ATTCTAAAT-A---TAT----------TGTCTA----A---------------TAA-AATCA-GTA-TACCAAGTT-TTGT--TAA-AGATACCT-T----GA--------AAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATAT
gi|31 : cattAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaAGATGTGTTTCAG-TA--AAACATAACATGTCAT------ACTTTAAG--TAAT-TA-TCTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGG-T-T-C-ATCAAATTTATC-A-CTA-------AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATT-TAAGTGCGTTTCAG-TA--AATGATACAATATCA------AAATATGAA--AGAG-TG-TAA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGG-ACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TTT-TGAACAAATTCAC
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G----T-GTATCGT-TTGTC-GG-TCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCA-GTAA-AAGAATTATC-TT-AAA--ATCAACT-----TTA-TCGACAAAATCACTC-A-AAATTGTATCAACA--AGAGAGGTA--ATTCTAAAT-AA--TATTTAGAAT--T----------ACC---------T--CTAATAA--A-ATC-AAA---------ATA-C-C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT-----AGTGTACAA----T----GTGC-----C---AATATCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAgtagtattaa
gi|6 : TATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-A-A-T-A-T-ATCAAAGTTTTC-A-TTA-------AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATC-AAGGTGAGTTTCA--TAACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TT-TCAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AG-TCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CTA-TCAACAAAATCACTCAA-AA-TTGTATTAACAATAGAG--GTA--ATTCTAAAT-A---TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-A-AAT-A-T-ATAAATATTCTC-A-TTA-------AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATC-AAGATGAGTTTCAG-TA--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TT-TCAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGT--GGGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCA-GTAA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAATCATTC-A-AAATGGTATCAACA--AGAG--AGATTACTCT---------TATT--G-TA--TTGTC----------------------TAA-AA---------AACA-----GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT-----AGTTTACAA----T----GTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AG-TCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----CTA-TCAACAAAATCACTCAA-AA-TTGTATTAACAATAGAG--GTA--ATTCTAAAT-A---TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-A-G-CAA-T-GTCTAACTTGTC---TGAC------AGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTC-AAGATGTGTTT-AT-GA--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GA-T---CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GG-TCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTTG-TTAATAAAATC-CT-------TTG-AT------------------ATT-----------TATT--GCAT--TTG---A----ACTA--TTCCTCT--TTGC-GACCA-GTT----CA---T-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC--GAAAATTTACAA---------GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 111111 1 11111 11 1111 1111111111111111 11111111 4444444444444444 222222222 1111 3333333333333333333333 22222222222222222222222 1 222 1111111 3333333 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 333333333 111111 1 1 1 22222
lowQualScore : 7 22222222222 55 0 888888 2 5 2 5 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 2 99999999 2 2 1 1111111111111111 2 2 2 2 2 2 77 3 4 3 11 5 3 44 0 0 0 222222222 99 44 3 0 1111 44 7777777777777777777777 5 1 1 1 1 3 1 99999999999999999999999 3 1 1 0 2 0 222 2 1 2 2 444 4444444 33 3 2222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0 5 1 1 33 333333333 1 1 1 555555 1 0 1 1 3 3 0 77 55555 2 3
lowQualScore : . ........... .. . ...... . . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . . ........ . . . ................ . . . . . . .. . . . .. . . .. . . . ......... .. .. . . .... .. ...................... . . . . . . . ....................... . . . . . . ... . . . . ... ....... .. . ....... .................................................................................................................................................................................. . . . . . .. ......... . . . ...... . . . . . . . .. ..... . .
lowQualScore : 4 33333333333 88 0 111111 9 7 9 7 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 7 77777777 7 9 0 3333333333333333 9 9 9 2 9 0 88 1 2 1 77 2 3 66 8 8 4 222222222 22 66 3 7 5555 66 5555555555555555555555 3 0 5 0 5 7 0 77777777777777777777777 6 0 0 2 7 7 333 7 4 7 7 777 1111111 99 8 9999999 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8 4 5 7 1 00 000000000 0 3 9 444444 4 7 3 0 2 2 0 22 00000 5 2
consensus : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-AG-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTC-A-AA-TTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-AG-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTC-A-AA-TTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GG-GCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TTC-TCAATCCAATCTTTG-A------GTAT----A--AGTG----A--A----AAAC-ACAGTATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATTCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGA
gi|10 : TATAATATT-TACAAG--A-GAGTTT-ACTAGTAGC-----ACA-T-CCT-TT-AAATTGT-GATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGT-A-AG-CAA-T-GTCAAACTTGTC---------TGACAGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCAT-----AA-TCCAAA--AAAT-TAT----CA--AT---------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GG-TCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGT-AG-TAAAGCAATC-TT-AAACTTTTTTTT-----TTG-TCAACAAAATCg
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCA-GTAA-TAGAATTATC-TT-AAA--ATCAGCT-----TTA-TCAACAAAATCACCC-ATAA-TTGTATCAACA--AGAGAGGTA--ATTCTAAAT-A---TATT--G------TGT--A----A---------------TAA-AATCA-GT--------------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACctttgacagtaatt
gi|12 : cattACTGTAT-TTATTA---A-T----GAGTTT-GTGCTTAGC-----AC--T-TCTCTT-AGATTGT-GATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTAT-ATGG-G-A-C-ATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTAT-A-TGAT-T-T-ATCGAGATTGTT-AC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCG------AAGTCAGAA--AAAT-TAT-CTGCA--ATAA-A--GT----TT----AAC---TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT--------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACA-A-AA-CAAGACAATT-TT-AAA--TTCAATG-----TTT-TCAATACAATCTTTT-A------GTAT----A--AGTG--GGA--A----AAATAA---TATA--ACTT--TT-TC-A----ACCA--T-----A--TTAA-AACTA-AGC-TAACA---TAATATA-TAC-A-A-----------GAT-CC----ATAT--ATCTGG--AGTTTAAAACTGCC----ATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : TAATAATGTTCA-TTAATGAGTTTTGGTA-AAGA-----ACA-T-TCA-TA-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGT-A-AG-T-T-G-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACATT-TTT-TT-AGGTTAT-TAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGT-ATAG-A-A-T-ATCAAATTTATC-AGACAAATTGA--G-TGT-A-------TC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTATGAAAA---AAA--AAATATATTCGGTA--ATAA-A--CT----CT--A-------TTTTCTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGT-A-AG-C-ACT-GCCAAACTTGTC---------TGACAGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTCt
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AAGGAA-T-AA-TAAAACAATC-TT-AAA--ATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACA-A-AA-TAAGATAATT-TT-AAA--TTTAATG-----TTC-TCAATACAGTTTCTG-------TGTAT----A--AGTG--GGA--A----AAAT-AG--TATT--ACTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T----TA-TAT-A------TGT----GAT-CT----AGAT--ATCTTG--AGTTTAAAA----CTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG-AAGAAAAATATTCTTAA--AAAG--TT-----GGAGACCACCAT-ATCACCTATCCCTATCACAAGCTGAAAC-CTG--AGTGCCCAT-----ATAGGGGAAGAAACTGAAAGAAGAGAaattgtaagtccttaaatattaattgtatttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-T--A-GAGTTA-ATTATAAGT-----ACG-T-TTT-TT-AGGTTAT-AAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGT-A----T-A-T-ATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-AT-----AAGTCAGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GG-GCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACA-A-AA-TAAGATAATT-TT-AAA--TTCAATG-----TTC-TCAATCCAATCTTTG-A------GTAT----A--AGTG----A--A----AAAC-ACAGTATT--TCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAG-AAGAAAAATATCCTTAAAAAAAAGTT------GGAGACCACCAT-ATCACCTATTCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGAGAAGAAACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGT-T-AG-C-AAT-ATCAAACTTATC---------TAACAGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTCAA-GA--TGATT--------------------------------TCC-AA--AAAT-TAT-CAATACTATAA----------TC--G-ATC---TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GG-TCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAAA-AG-GAG-T-AA-CAGAATAATCTTT-AAA--A--AGCT-----GTA-TCAATAAAGTC
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGC-A-AG-T-T-TCACCTAATATGTC-A-------C--------T-AG-A--GAC-------GA--GTGT---ATCTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCA------AAATCTAAATAAAAC-T-----GCA--ATATTA--TT----TTTAA-AAC---TTAT
gi|22 : AAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTattgcattgtaaaaatgatattctatgcgtttctttgtcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAGA-----ACA-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAACAAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGT-ATGG-T-A-T-GTTAAAG-TGTT-AC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC-A-TAT-TGTTTctagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaagaatagaaggtaaaaataaagtaccagagaaagagaagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-T--A--AGTGA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAC-GGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-T--A--AGTGG-GTT-TAAGGTTAATATA-T-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----TTA-TCAACAAAATCACTC-A-AAATTGTATCAACA--AGAGCGGTA--ATTCTAAAT-A---TAT----------TGTCTA----A---------------TAA-AATCA-GTA-TACCAAGTT-TTGT--TAA-AGATACCT-T----GA--------AAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATAT
gi|31 : cattAAGA-----ACA-T-TAT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCAT------ACTTTAAG--TAAT-TAT-CTTTG--ATAT-A---G----TC--G-AAG---TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAGA-----AAT-T-TCT-TT-AAATTAT-GAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTACAAA-TGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGT-A-AGGT-T-C-ATCAAATTTATC-A-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCA------AAATATGAA--AGAG-TGT-AA--A--ATAC-A--TA----AT--C-AA---------TCTTATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGG-ACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCA-G-AAGTAAAATAAAC-AT-AAA--TTCTATA-----TTT-TGAACAAATTCAC
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G-----TGTATCGT-TTGTC-GG-TCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCAGT-AA-AAGAATTATC-TT-AAA--ATCAACT-----TTA-TCGACAAAATCACTCAA-AA-TTGTATCAACAAGAGAG--GTA--ATTCTAAATAA---TATTTAGAAT--T----------ACC---------T--CTAATAA--A-ATC-AAA-A---T-AC------C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT-----AGTGTACAA----T----GTGC-----CAATA---TCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG---------TAACACTAAAGAAAGGATCACACAAGAGGCCACCATCATTCCATATACATA-CACAgtagtattaa
gi|6 : TATAGTATTG---A-T--A--AGTAA-GTT-TAAGGTTA--ATA-TATCT-TTCAGGTTAT-GGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAA-AA-T-A-T-ATCAAAGTTTTC-A-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCAT------GGTCTAAA--AGGT-TTT-CAACA--ATAA-AACTTATCATT--ATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AG-TCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGT-AA-TAAAATTATC-TT-AAA--ATCAACT-----CTA-TCAACAAAATCACTCAA-AA-TTGTATTAACAATAGAG--GTA--ATTCTAAAT-A---TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTAT-A-AAAT-A-T-ATAAATATTCTC-A-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCAC-----GA-TCTCAA--AGGT-TTT-CAGAA--ATAA-A--AT----TT--A-T-C---TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGT--GGGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCA-GTAA-TAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAATCATTC-A-AAATGGTATCAACA--AGAG--AGATTACTCT---------TATT--G-TA--TTGTC----------------------TAA-AA---------AACA-----GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT-----AGTTTACAA----T----GTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AG-TCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCA-GTAA-TAAAATTATC-TT-AAA--ATCAACT-----CTA-TCAACAAAATCACTCAA-AA-TTGTATTAACAATAGAG--GTA--ATTCTAAAT-A---TATT--GTCTAATAGTC-AGTATACCAAGT-----TTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAAAGAAAGGATCACACAAGATGTCACCATCATTCCATATACATA-CACAAAA-AAAATACTGAGAATGCCAGCCAGTAATAGAG--AGA---TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGT-A-AG-CAA-T-GTCTAACTTGTC---------TGACAGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCAT-----AA-TCCAAA--AAGT-GAT----CA--ATAA-----------T--A-TAC---TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GG-TCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGC-AA-TAAAACAATC-TT-AAA--ATC--TGTTTTTTTG-TTAATAAAATC-CT-------TTG-AT------------------ATT-----------TATT--GCAT--TTG---A----ACTA--TTCCTCT--TTGC-GACCA-GTT----CA---T-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC--GAAAATTTACAA---------GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
blockSeqs : A TTCATTAATG TT A GTTAAT T A C C T G CGGA A G G ATTG TA T G T T A T A AT T CC C ACGT CTTT GT T A A AT TTA TAT ATAG G AT T A CG AGGG A AT TA A T G G TG G TTG ATGCCATTAT AT A AT A CGAGATTC C T A TC C G A GT T TCAAGTC T A AGCAA C A C AGACAAATTGAG T G T C C A TT A A A GA C T AC TTATGAAAA CA TA A TCGG CT AACTTATCATTATAATTTA A T A A T A C GTAAATTGTACGTT G T T T G GT G A T C CTT TGTTTTT AA A CATAA CAACAAGAGAGGTAATTCTAAATAATATTTAGAATTACCTCTAATAAAATCAAAATACCAAGTTTTGTTAACGATACCTTGAAAATTAGTGTACAATGTGCCAATA T G G T AG AAGAAAAA A A A CACACA C A A T T A GA CAGTA G A
blockSeqs : T TACAAGAG T C GTTA . A . C . A A A A A T TT C G T A A T A AT . . . AAC GC . . T . TT . . ATAG . . T . TG TGA . TT CA . A A G TG . . AGAAATTCA G T T . TATTT C G T GT C . . T . A T . TGGGA . G G TGACAGA . . . A . G AG . T . GT C . . TAAG AG . . CTG . TATTTTTAAAAC T G C C T G A GTTGTTCATTTGTA . T A . T GT . T . . A TT G T CAAAA AAGTGGGAAAAATAATATAACTTTTTCAACCATATTAAAACTAAGCTAACATAATATATACAAGATCCATATATCTGGAGTTTAAAACTGCCATGCACCAGCA G T T C TA AAGAAAAA T C T CACACA C C C C T . AG . G A
blockSeqs : A TGCATAG T A GTTA . . . . . G A A C T A CT A C G C A . G AG . . . TG GC . . T . AC . . GC . . . . CG G . TG GG . A T T CA . . CAAAACAT T T T . CTG G A A TC T . . A . T G . TGATT . G A ACTGAGG . . . T . T TT . T . TT T . . TAA AG . . CAG . ATTTTAAAC A G G C T G G TTAATTTGTGTTTT . T A . T GT . A . . T CT A T CAAAA AAGTGGGAAAAATAGTATTACTTTTGTCAACCATTTTAAAACTAATCGAACATTATATATGTGATCTAGATATCTTGAGTTTAAAACTTCCATGCACCAGCA G T T C AA . T C A CACACA C C T . . . . . . .
blockSeqs : G TGCATAG A A C . . . . . A A A A T T CA C T A C G . T TT . . . CG GC . . T . CT . . TT . . . . AG A . CC TA . G A A TA . . GAATTCTT T T A . TTC T A T TC . . . T . A T . TAGAA . A T TGACAGA . . . T . A AG . T . TT C . . AAG TA . . CAA . AGTTTAAC A G C A T A C GAGATTCATTGCCA . T C . . GT . A . . A TG T T CAAAA AAGTGAAAAACACAGTATTTCTTTTGTCAACCATTTTAAAACTAATCGGAACATATATATATATATGTGTGTGATCCAAATATCTGAATTTAAAACTGCCA G T T T TT . A A A CACACA C A A .
blockSeqs : G ATG A A C . . . . . G A G G A A TC T A G G G . A GT . . . CG CT . . A . CG . . TT . . . . TG G . TG GG . A T T CA . . CCATTCGC T T T . TTC C A T TT . . . A . T T . AGCAC . A T AATGAAG . . . A . A CG . A . GA C . . AAA TA . . CTT . AGTCGAAG A T A C T G G GTGTATCGTTTGTC . C T . . GT . A . . T TG C A CAAAA CAACAAGAGAGGTAATTCTAAATATATTGTGTAATAAAATCAGTATACCTAGTTTTGTTAAAGATACCTTGAAAATAAGTGTACAATGTGCCAATA A T T T AG . A A A T . A A
blockSeqs : G ATA A . A . . . . . A A G A T A TT A C G C A . G AT . . . T AC . . T . AC . . GT . . . . TT G . TA TA . A A A TA . . TTGGAACC A T A . TTT C C A TT . . . C . T A . AGCAA . A C TAACAGA . . . T . T TA . T . GT C . . TAC TG . . CAA . ATAATCAA A A C A A G C GTAAATTGTACGTT . G G . . GT . A . . T TG C A CAAAA CAACAAGAGCGGTAATTCTAAATATATTGTCTAATAAAATCAGTATACCAAGTTTTGTTAAAGATACCTTGAAAATAAGTGTACAATGTGCCAATA A G G T AG A . . . A
blockSeqs : G ATA G . T . . . . . G A G A T T TC C A T G G . T TT . . . A TT . . T . CG . . GT . . . . T A . TG CG . T G G TG . . CAAAACAT T T T . CTT G A A CC . . . T . A G . TGGTA . G A ACTCATA . . . C . A CG . T . GC C . . AAA TA . . CAG . AATTTATC A T A T A A A GTTGTTCATTTGT . G G . . GT . A . . A CT A A TA CAACAAGAGAGATTACTCTTATTGTATTGTCTAAAAAACAGTAAACATAGTGTTGTTAAAGATACCTTAAAAATTAGTTTACAATGTGCCAATA A G G A TT
blockSeqs : . ATA A . A . . . . . G A . G T A TC A C G C G . G AT . . . G AC . . T . CG . . AT . . . . T G . TG CA . A A T CA . . CCATTCGC T T T . CGA T A A TC . . . T . A G . AGGTT . A C TGACAGA . . . C . T TC . A . GA C . . TGG TC . . AA . ACTCTA A A A T G G A ATTCATCGTCTGT . A G . . GC . T . . A CT A A GA TAACAATAGAGGTAATTCTAAATATATTGTCTAATAGTCAGTATACCAAGTTTGTTAAAGATACCTTGAAAATAAGTGTATAATGTGCCAATA A G G
blockSeqs : T . . . . . G A . G T A CG A C G C A . G AT . . . A AC . . G . CG . . GT . . . . T G . CC TA . T G C AA . . TTATGCGT T T C . TTC T A T C . . . A . T T . AAATA . T T ACTAAG . . . T . A TC . A . GA . . . CGA CA . . G . TCGATC . A A T A A A GTC . G G . . A . A . . T TA T A G TAACAATAGAGGTAATTCTAAATATATTGTCTAATAGTCAGTATACCAAGTTTGTTAAAGATACCTTGAAAATAAGTGTATAATGTGCCAATA A .
blockSeqs : A . . . . . G A . A A T CA T T A A A . A TG . . . G GT . . A . CA . . AT . . . . T G . CA TT . A A A CA . . TTGGAACT G A T . TTT T A T C . . . T . A T . AGCAA . A G ATTAAG . . . T . T TG . A . GT . . . TAA A . . . . TATAC . T T T G . A GTC . C T . . T . T . . A CT A A . ATTTATTGCATTTGAACTATTCCTCTTTGCGACCAGTTCATTTATAGTATAAATATGTATAACAAATGAAGCGAAAATTTACAAGT .
blockSeqs : A . . . . . . A . A A T TC T T A A A . A TG . . . G GT . . A . CA . . GT . . . . . . . TT TG . G A A TA . . CATTTCGC G A A . TTT A C A T . . . A . T T . AGTT . A T ATTAAA . . . G . T C . . . T . . . . C . . . . . . A A T T . C . . A . T . . A CT A .
blockSeqs : A . . . . . . . . T T A CG A C G C A . G AT . . . G GC . . T . AT . . G . . . . . . . AT TA . A T G TA . . CACTTAGC A T . . CAT A C A T . . . T . A G . AGTT . A G AC . . . C . A G . . T T A . . A . T . . T CT A
blockSeqs : A . . . . . . . . . A T CG T T A T A . A CA . . . G GT . . G . . . T . . . . . . . . T C G TG . . AAAAACAT . . . . TT C T A C . . . T . A G . AATA . A A . . . . C . . . . T . T . . A . G
blockSeqs : A T T T G T T . . C TG . . . G GC . . A . . . . . . . . . . . G TG . . AATCGA . . . . . . . . . . . . . . A A . TA . T C . . G . A . . A
blockSeqs : G . . . . . A TA . . . A . . . A . . .
blockSeqCons : TCATAG***** A*** G**** AGNNA*** NAA****** ATTTATC*************** GT* CAAAA** ********* CACACA
originalCons : ACTGTATAGTATTGTGCA-T--A-GAGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-A-AG-T-A-T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCAT-----AAGTCCGAA--AAAT-TAT-CAGCA--ATAA-A--TT----TT--A-AAC---TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCA-N-AA-TAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTC-A-AA-TTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG-AAGAAAAATANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
finalCons : ACTGTATAGTATTGTCATAG-----AGTTA-GTTATAAGN-----ACA-T-TCT-TT-AGGTTAT-GAAAGTTA---TTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AAG----TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGT-AAGNNA---T-ATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCANAA------TCCGAA--AAAT-TAT-CAGCA--ATAAATTTATC---------------TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCAGT-AA-TAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTCAAAA--TTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCTT--TTGTC-A----ACCA--T-----T--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG---------TANCACTAAAGAAAGGATCACACAGGAGGCCACCATCATCCCATATNCCTACCACAAGCTGAAAC-CCGGAAGTGCCCAC-----ATAGGGGAAGAAACTGAAAGAAGAGA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 1 111111111 1 11111 11 1111 1111111111111111 4444444444444444 44444444444444444444444444 22222222222222222222222 1111111 1111111 22222222222222222222222222222222 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 444444444 222222222222222 1111 1 1 22222222 11 2222222
lowQualScore : 7 666 5 8 0 2 888888888 5 2 8 2 3 6666 5 4 0 1 5555 00 11 1 3 1 1 6 5 3 11 0 2 33 2 66666 55555 33 2 1 2 11 444 444 8888 2 33 5 2 0 44 1111 2 33 44 5 1 4 2 11 2 444 7777777777777777 55 1 66 2 9999999999 1 1 1 77 8 2 2 44 2 9999999 3 4444 2 1 1111111111111111 2 2 2 2 2 2 77 3 4 3 11 5 3 44 0 0 0 2 6 77 44 88888 3 0 4444 3 88888888888888888888888888 9 2 2 1 2 4 1 55555555555555555555555 3 1 1 0 2 8 6 1 2 2 444 6666666 33 4 0 6666666 77777777777777777777777777777777 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 0 5 1 1 33 111111111 3 5 2 111111111111111 0000 0 2 1 5 9 0 8 55 99999999 11 5 3333333
lowQualScore : . ... . . . . ......... . . . . . .... . . . . .... .. .. . . . . . . . .. . . .. . ..... ..... .. . . . .. ... ... .... . .. . . . .. .... . .. .. . . . . .. . ... ................ .. . .. . .......... . . . .. . . . .. . ....... . .... . . ................ . . . . . . .. . . . .. . . .. . . . . . .. .. ..... . . .... . .......................... . . . . . . . ....................... . . . . . . . . . . ... ....... .. . . ....... ................................ .......................................................................................................................................... . . . . . .. ......... . . . ............... .... . . . . . . . .. ........ .. . .......
lowQualScore : 6 222 0 8 2 4 111111111 7 9 6 9 5 5555 2 0 7 0 7777 77 22 0 4 9 9 2 0 2 22 4 5 44 5 33333 99999 44 5 0 5 88 777 777 5555 7 77 3 7 5 00 0000 9 44 99 3 5 1 6 99 5 444 3333333333333333 11 1 33 7 3333333333 9 9 3 66 0 7 7 99 7 0000000 8 9999 9 0 3333333333333333 9 9 9 2 9 0 88 1 2 1 77 2 3 66 8 8 4 2 7 99 66 33333 3 7 6666 3 77777777777777777777777777 3 0 5 0 7 5 0 88888888888888888888888 6 0 0 2 7 0 8 4 7 7 777 9999999 77 6 2 9999999 99999999999999999999999999999999 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 4 5 7 1 00 666666666 0 0 2 222222222222222 6666 8 5 0 7 3 6 0 00 22222222 00 0 8888888
consensus : ACTGTATAGTATTG-GCA-TAGAGTTAGTTATAAG-----N---ACAT-TCT-TT-AGGTTA-TGAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGTAAGNTATATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCATAA-TCCGA--AAAA-----T-TAT-CAGCAAT-A---AA-TT-T--ANC-----------TTATTTCTNATACTTCTAATGTTACAGTGNAANATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCAGTAATAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTCAA-----AATTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCT-T--TTGTC-A----ACCA--TT--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG--------TAACACTAA-AGAAAGG-A---TCACACA---AGA----GGCCACCATCATCNCATATNC-CTACCACAAGCTGAAAC-CCGGGAGTGCCCA--C-----ATAG--GGGAAGAA------ACTGAAAGAAGAGA
Reference ( family-3035 ) : ACTGTATAGTATTGT-CA-TAGAGTTAGTTATAAG-----N---ACAT-TCT-TT-AGGTTA-TGAAAGTT---ATTGATTGAGCAAATCTTCATTAAAATCNCCN---AGCAAAACNANATTNTTNGANATTTCGTAA-GCCTTTTCGATATTNTTATTAAGGTTATTA-A--AA-AA-G---TCTGC---A--TCA-GCNGTTTTAGGG-CTATAAAATACNCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATNTCGAC-CCAAATAGATTCGTCGCAAAATGTTTCCA-A---AT---CNA--TTCG---CCT-TGAATGAATTA-TA-TTT-----T--TCGANAAATAAATCAAG-ATA-CCC-CC-TCCA-TGATTTGT---A---CGATCTTTTCTGTAAGNNATATCGAANTTGTC-A-------TGA-AG-TGT-AA-A-AGACT-ATCNGGAACGTGT-TGGTCNA-GATGTGTTTCAGT-A--AAACATAGAATATCANAA-TCCGA--AAAA-----T-TAT-CAGCAAT-A---AA-TT-T--ATC-----------TTATTTCTNATACTTCTAATGTTACAGTGNAATATCGATAGANTAT--G----TTGT-TCGT-TTGT--GG-TCCNGGATTNCTCTCAATATCTCCTGCTTGCAAAAG-AA-GCAGTAATAAAATAATC-TT-AAA--NTCAACG-----TTN-TCAACAAAATCACTCAA-----AATTGTATCAACA--AGAG--GTA--ATTCTAAAT-A---TATT--GCT-T--TTGTC-A----ACCA--TT--TTAA-AACTA-ATC-GAACA---T-ATATA-TAT-A-ATGTGTGT----GAT-CC----AAAT--ATC--G--AGTTTACAA----C----GTGC-----C---A---TGCTGCGGCCATTAAATAAACCTATGGCTGCTCTCCATGCACAGATGTCATTACCCATTGGGTAG--------TANCACTAA-AGAAAGG-A---TCACACA---GGA----GGCCACCATCATCCCATATNC-CTACCACAAGCTGAAAC-CCGGAAGTGCCCA--C-----ATAG--GGGAAGAA------ACTGAAAGAAGAGA
gi|1 : ACTGTACA-TGTTGTGCA-TAGAGTTAATTATAAG-----T---ACGT-TTT-TT-AGGTTA-TAAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGTA---TATATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-ATAAGTCAGA--AAAA-----T-TAT-CAGCAAT-A---AA-TT-TTAAAC-----------TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GG-GCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACAA-AATAAGATAATT-TT-AAA--TTCAATG-----TTC-TCAATCCAATCTTTGA----------GTAT----A--AGTG----A--A----AAAC-ACAGTATT--TCT-T--TTGTC-A----ACCA--TT--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAGAAGAAAAATATTCTTAA-AAAAAAG-T---T---------GGA----GACCACCAT-ATCACCTATTC-CTACCACAAGCTGAAAC-CCGGAAGTGCCCA--C-----ATAG--GAGAAGAA------ACTGAAAGAAGAGA
gi|10 : TATAATATTTA-CAAGAGAGTTTACTAGTAG-----C---ACAT-CCT-TT-AAATTG-TGATAGTT---AG-GATTGTACAAATCTTCGTTGAGATCGCCT---AGCAAAATAATATTGTTTGTTACTTC-CAATGCCTTTTCAATATTATTATTAAAATTGGTA-A--AA-AA-T---TCTGC---A---CATGCAGTTCTGGGG-CTATAAAACAATCC---T---AGC--AGA--AA-AT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATGGATTCGTTGCAAAAAGTTTCTA-A---TT---CAA--AACA---TCT-GGA----------A-TTT-----C--TGGACATATAAA-CAAGCAAG-CCC-CC-TCCA-TGATTTGT---A---CTATCTTTTCTGTAAGCAATGTCAAACTTGTC---------TGACAGATGT-AA-A-AGACT-ATCAGGAATTTGT-TGGTCAA-GATGAGTTTCTGA-A--AAACCAAGAATATCATAA-TCCAA--AAAA-----T-TAT----CAAT-------------------------------TTTCTTATACTTCTAATGTTATAATGAAATATTGATAAACTGT--GTAAATTGT-ACGT----T--GG-TCCTGGGTTTCTTTCAACATCTCCTGCTTGTAAAAG-AA-GGAGTAGTAAAGCAATC-TT-AAACTTTTTTTT-----TTG-TCAACAAAATCg
gi|11 : taatggagtgaaggatagcattaattctggtaggttcgttCAAAAG-TA-GCAGTAATAGAATTATC-TT-AAA--ATCAGCT-----TTA-TCAACAAAATCACCCAT-----AATTGTATCAACA--AGAGAGGTA--ATTCTAAAT-A---TATT--G-------TGT--A----A----------TAA-AATCA-GT--------------ATA-CCT-A-GTTT-TGTTAAAGATACCTTGAAAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTTCGTCCATTAAAAAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG--------TAACACTAA-AGAAAGG-A---TCACACA---AGA----GGCCACCATCATTCCATATAC-ctttgacagtaatt
gi|12 : cattACTGTAT-TTATTA---A-T-GAGTTTGTGCTTAG-----C---AC-T-TCTCTT-AGATTG-TGATAATTCGGATTCATT----AAATTTTCATTTAAATCACCATTGATCAA---TACATTGTTTGTAATTTCAAAA-GCTCTTTCAATATTATTGTTTATCTTATCA-A--GA-AA-A---AATGC---A--TCA-GCTGTTTT-TGG-CTATAAAATGTTCC---T---ATT--A-GATAA-GT-TTCATT--TTTT---AAT-TTAATTTCAAC-CCAAATAGATGCGCTGTAATATACTTCTA-ATTGAT---GAA--TTCT---TTTATGAATCAATAA------T-----T--TCGACAGATATTTCAAA-ATA-CCC-CA-ACCATTGA-TTGT---T---CTATCTTTTCTATATGGGACATCGTAGTTATC----------------TGT-AAGA-AGAAT-CTCGTGAaaacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtatacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgaatcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacactttttgaataaagtaagtgtttttgtctcaccaggcgttcaaaagtcttaaagaacacggatatatatgcagcagacgtaagcatgcatgtacacacaaataccaacatacacatgcgtatatatatatatacacatacaggatgataacaaagatcaaa
gi|13 : aaattggcttttttatatagccatattgtgcgagtataagttggctgtaaattgtaagaaaaaggcaaagttatatatgtggcactatgatcactgatgtcaggtgggactggaagcgtaccagattcgatataacgaaggtcctctggaattaaaatgggatctaaaacagctcccatacgtgtgggttcatta---T---ATT--A-A--AA-AA-ATCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGGATTA-TG-GTT-----T--TCGAGAAATAAGGTAAG-AGA-CCC-CC-TCCA-TGATTTGT---A---TGATCCTTTCTATATGATTTATCGAGATTGTT-AC------TGA-GG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGATCTA-GATGTGTTTCAGT-A--AAACATAAAATATCGAAG-TCAGA--AAAA-----T-TAT-CTGCAAT-A---AAGTT-T--AAC-----------TTATTCCTGATGCTCCACATGTTACAGTGCATTATAGACAGGATAT--G----TTGT-TCAT-TTGT--------TGAA-TAGTCTCAATATCGCCTGCTTACAATAGTAT-ACAA-AACAAGACAATT-TT-AAA--TTCAATG-----TTT-TCAATACAATCTTTTA----------GTAT----A--AGTG--GGA--A----AAATAA---TATA--ACT-T--TT-TC-A----ACCA--TA--TTAA-AACTA-AGC-TAACA---TAATATA-TAC-A-A-----------GAT-CC----ATAT--ATCTGG--AGTTTAAAACTGCC----ATGCACCAGC---A---TGCTGCAACCATTGAATAATCCTATAGATGATCTttt
gi|14 : AAG-----A---ACAT-TCA-TA-AAATTA-TGAAAGTT---ATTG-TTAAGCAAATATTCATTTAGATCTCCA---AGTAAAATTAAATTCTTGGACATTTCATAA-GCTTTTTCGATAATAGTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--TCA-GCTGTTTTAGGG-TTATTAA
gi|14 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaCTG-TTTTAGGGTTATTAACCTTAAC-CGAGATAGATTCATTACAAAATGCTTCCA-G---AT--------TTGGAACCCT-TGAATAAATTA-TAATTT-----T--TTGCTAAATATATCAAA-ATA-CCC-CC-ATCA-TGATTTGT---T---CTATCTTTGCGGTAAGTTG-ATCAAATTTATC-ccttaaccgagatagattcattacaaaatgcttccagatttggaacccttgaataaattataattttttgctaaatatatcaaaatacccccatcatgatttgttctatctttgcggtaagttgatcaaatttatcgcaataaatca
gi|15 : agttagttttatcatagagccatactgatctttcataagtatgatcagttctatataaaaaaggtaaaataatgtagctttgtgttcattaatatcaggaggtatatggataatatctgcaatgagataagataaatcgtaagggatgattactggatcgagtatagcattgtttctccttggttaagtaataatgttcattaatgagttttggtaaagaacattcataaaattatgaaagttattgttaagcaaatattcatttagatctccaagtaaaattaaattcttggacatttcataagctttttcgataatagtattaaggctgttaaagaagtctgcatcagTGTATAGTATTGTGCA-TAGAGTTAATTATAAG-----T---ACAT-TTT-TTTAGGTTA-TTAAAATT----TTGATTCAGCAAATCTTTATTTAAATCTCCT---AACAGAACTACATTTTTAGAC--TTCATTC-GCTTGTTCTATATTTTTGTTAAAATTATAA-A--AA-AA-A---TCT-CTTTG--TCA-GCTGTTTTAGGG-CTGTAGAATAACAC---T---AGT--A-A--AA-AA-TTCTCCGAATTT---GTT-TTGATGTGGAC-CCAAATTGATTCTTCACAAAATATTTCCA-A---AT---Cgcaataaatca
gi|16 : tctttcataactggcatgtatctgataaggaaaaggcaaaacgatgtatgtagcattatggtcacttacagtagacggaattttaattatgcctgagtctgtataaggcatatcttgtggaataattatggaatcaagatagcattgattcttgtgggcttgTCCTCATAAAGGTCACCA---A-CTAAACAAT-TTATTGGAGATGTTGTAA-GTAAGTTCAAAAATGTTGTTGAA--TATTT-ACCAA-AATG---CCTCT---A--TCA-ATAGTCATAGGG-TTATACGTTACTCC-------A----A-A--AA-ATATTTTGAGATCCA---AAC-TTGATACTAAC-CAAAATAGATTTATTACGAAACAATTGAA-G---GTATGCCA--TT-A---TTT-T--ATGAAT----A-TTA-----C--TTGACAAATATATCACG-ATT-CCA-CA-CAAA-TGAATTGT---T---CTACTCTTTCAGTATAGAATATCAAATTTATC-AGACAAATTGA--G-TGT-A-------TC-AACAAGAAC-TGCATCATCTAAGTTTTGTTT-AGTTA--AAACACAAGATGTCATTA-T--GA--AAAAAAAAATATATTCGGTAAT-A---AA-CTCT--ATT-----------TT--CTCTGATCCTTCTGATGTTACAATGc
gi|17 : AAG-----A---ACAT-TCT-TT-AAATTA-TGAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTa
gi|18 : gaagttagttttatcatagagccatactgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgaaagtagctttatgatcactaatatcaggaggtacacggatagtacctgcattgagataagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAC-CCATATGGATTCGTTGCAAAAGGTTTCTT-G---TT---CAA--AACA---TCT-AGAGTGAATTA-AA-TTC-----C--GAGACACATAAA-CAAGCAAA-TCC-TC-TCCA-TGATTTGT---A---CAATCTTTTCTGTAAGCACTGCCAAACTTGTC---------TGACAGATGT-AA-G-AGAAT-ATCAGGAATTTGT-TGGTCt
gi|18 : ttaCTTTTAATATATCCTGCTTGTAAAAG-AA-GGAATAATAAAACAATC-TT-AAA--AT-AA-------TTG-T-----AAGTC-CTTAAATATTAATTGTATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttaatatatcctgcttgtaaaagaaggaataataaaacaatcttaaaataattgtaagtccttaaatattaattgtatttgaactatt
gi|19 : ttaacccatatggattcgttgcaaaaggtttcttgttcaaaacatctagagtgaattaaattccgagacacataaacaagcaaatcctctccatgatttgtacaatcttttctgtaagcactgccaaacttgtctgacagatgtaagagaatatcaggaatttgttggtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGCTTGCAATAA-AATACAA-AATAAGATAATT-TT-AAA--TTTAATG-----TTC-TCAATACAGTTTCTG----------TGTAT----A--AGTG--GGA--A----AAAT-AG--TATT--ACT-T--TTGTC-A----ACCA--TT--TTAA-AACTA-ATC-GAACA---T----TA-TAT-A------TGT----GAT-CT----AGAT--ATCTTG--AGTTTAAAA----CTTCCATGCACCAGC---A---TGCTGCAACCATTTAATAAACCTACGGCTGTTCTCTACGCACTAATGCCATTGCCCATTGGGAAG----------------A-AGAAAAATATTCTTAAAAAGTTGGA----GACCACCAT-ATCACCTATCC-CTATCACAAGCTGAAAC-CTG--AGTGCCCA--T-----ATAG--GGGAAGAA------ACTGAAAGAAGAGAttgaactatt
gi|2 : ACTGTACA-TGTTGTGCA-TAGAGTTAATTATAAG-----T---ACGT-TTT-TT-AGGTTA-TAAAAATT----TTGATTGAGCAAATCTTCATTTAAATCTCAT---AACAGAATTACATTATTTGAGACTTCATTA-GCCTGTTCTATATTTTTGTTAAAAATATAA-A--AA-AA-AAC-TCTTT---G--TCA-GCTGTTTTAGGG-CTGTAGAATAACCC---T---AGT--A-A--AA-AT-TTCTCTGATTTT---GTT-TTGATGTCGATACCAAA-AGATTCTTCACAAAATATTTCCA-A---AT---CCA--TTCG---CCT-TGAATGAATTC-TG-TTT-----T--TCGAGAAATAAATTAAG-ATA-CCC-CT-TCCA-TGATGTTT---A---CGATCTTTTTTGTA---TATATCGAGATTGTTAA-------TGA-AG-TGT-AA-A-AGATT-GTCTGGAAAGTTT-TGGTCTC-GATTTGTTTTAGT-A--AAATATAAAATAT-ATAAGTCAGA--AAAA-----T-TAT-CAGCAAT-A---AA-TT-TTAAAC-----------TT-TTCCTGGTGCTCCTCGTGTTACAGTGCATTATCGACAGGGTAT--G----TTGT-TCAT-TTGTA-GG-GCCTGGATTAGTCTTAATATCACCTGCTTGCAATAG-AATACAA-AATAAGATAATT-TT-AAA--TTCAATG-----TTC-TCAATCCAATCTTTGA----------GTAT----A--AGTG----A--A----AAAC-ACAGTATT--TCT-T--TTGTC-A----ACCA--TT--TTAA-AACTA-ATCGGAACA---T-ATATA-TAT-ATATGTGTGT----GAT-CC----AAAT--ATCT-G--AATTTAAAA----C-----TGC-----C---A---TGATGCAACCATTGAGTAATCCTATGGCTGCTCTCCAAGCACAAATGCCATTACCCATTAGGTAGAAGAAAAATATCCTTAA-AAAAAAG-T---T---------GGA----GACCACCAT-ATCACCTATTC-CTACCACAAGCTGAAAC-CCGGAAGTGCCCA--C-----ATAG--GAGAAGAA------ACTGAAAGAAGAGAggaaaaggaataaatgaagaaaaaatataga
gi|20 : CAGAATGTT--CA-A---AT-----A--ATCG---A----GAATGGATTA-AA-TTCCGAGAT--TC-ATAAACAAGTTTAT-ATA-ACCACCGTCCA-TGATTTGTTCAAGTCCGATCTTTGCTGTTAGCAATATCAAACTTATC---------TAACAGACAT-CA-A-ATACT-ATCAGGAACGTGT-TGGTCAA-GA--TGATT---------------------------TCC-A--AAAA-----T-TAT-CAATACT-AT--AA-TC-G--ATC-----------TTACTTCTTGTGCTTCTAGTGTTGTAATGAAATATTGATA-ACTGT--T----TAAT-TTGTGTTTT--GG-TCTTGGGTTCTTTTCAATACCCCCTACTTGTAAAA--AA-GGAGTAACAGAATAATCTTT-AAA--A--AGCT-----GTA-TCAATAAAGTC
gi|21 : tcT-TTGA-----AC-CCATACGGATTCCTAACAGAATGTTGTTAGA---AT---AGAAATTCA---------AA--AGTTAATA-TTT-----TATTTGCTAAATATACCAAA-GTA-CCA-CC-ACTA-TGGTTTGT---T---CTATCTCTGTGGCAAGTTTCACCTAATATGTC-A-------C--------T-AG-A--GAC-------GA--GTGT---ATCTA-AGTGAATTTCAGT-G--AATGTTAGAATTTCAAAA-TCTAAATAAAA-----C-T-----GCAAT-A--------------------------TTATTTTTAAAACTT---ATATTGCATTGTAAAAATGATATTCTAT--G-----CGT-TTCT-TTGT--
gi|22 : AAG-----A---ACAT-TCT-TT-AAATTA-TGAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCTGTTTTAGGG-CTATAAAATACGCCTTAT---AG---A-A--AA-AT-TTCTcaagactctggtaagtttcaatgttcaaagcgtctaataaaatcagaatcagaatgaacat
gi|23 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaAAG-----A---ACAT-TCT-TT-AAATTA-TGAAAGTT---ATTG-TTAAGCAAATCTTCATTAAAATCTCCA---AGTAAAATCAAATTCTTGGACATTTCGTAA-GCTTTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTAC---A--TCA-GCGGTTTTAGGG-CTATAAAATACGCC---T---AATAGA-A--AA-AT-TTCTtgt
gi|24 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttctgtaataacgttcattaatgagttttggtaTTAAATAAACCTATGGCTGCTCTCCATGTACTTATATCA-CAACCATTTGGTAA--------CAAGACTAGTAGAAA--------TAC-CG---AGATGTGAGCCGCCATTAGCACAGAACCTCTACCAAAAAC--ATTT-CTGGGAGTACCTAAGA-----ATAGAAGGTAAAAATAAAGTACCAGAGAAAGAGAt
gi|26 : atttgcaagtgCC---T---A-T--C-A--AA-AT-GTCTCT-ATTCT----TT-TT-ATGTCAGC-CAAAATAGATTCATCACAAAATATTTCCA-A---AC---TTA--TGCG---TCT-TGAATAAAGTA-TA-CTT-----------------------AA-ACA-CCC-TT-TACA-TGGTTTAT---A---CTGTCTTTTATGTATGGTATGTTAAAG-TGTT-AC------TCA-TA-TGT-AA-A-ATATT-ATTTGAAATATTT-TGATC-A-TAT-TGTTTagaagaataaacatgctgtttgcaaatattatgaatgaggttt
gi|27 : TATAGTATTG---A-TA-AGTGAGTT-TAAG-----GTTAATATATCT-TTCAGGTTA-CGGAA-TG---ATGAGTTGAG---GTTTTCATTAAAATAATCT---AGATGGACGATATTTTTAGAAGTTTAATAG-GGCTTCTCAATATTTGCATCCAGGTTATTATA--AA-AC-G---T-GGT---AGTTTT-GCAGTTTTGGGA-CTAttaaggaattaa
gi|28 : ggtgggttcattTATAGTATTG---A-TA-AGTGGGTT-TAAGGTTAAT---ATAT-TTT-CC-AGGTAATTGAA--TG---ATGAGTTGAGTAGGTTTACATTAAAAACACAT---AAGAGGACAATATTTTTAGAAGTTTCATAG-GCCTTCTCATTATGTGCATTCAAGTTATTG-A--AA-AACG---T-GGT---A--TCT-GCAGTTTTGGGA-Caa
gi|3 : gtgggttcattCAAAAG-AA-GCAGTAATAAAATTATC-TT-AAA--ATCAACT-----TTA-TCAACAAAATCACTCAA-----AATTGTATCAACA--AGAGCGGTA--ATTCTAAAT-A---TAT-----------TGTCTA----A----------TAA-AATCA-GTA-TACCAAGTT-TTGT--TAA-AGATACCT-T----GA--------AAAT--A-------AGTGTACAA----T----GTGC-----C---AATATGCTACGGCCATTAAATAGACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG--------TAACACTAA-AGAAAGG-A---TCACACA---AGA----GGCCACCATCATTCCATAT
gi|31 : cattAAG-----A---ACAT-TAT-TT-AAATTA-TGAAAGTT---ATTG-TTAAGCAAaaatacacagaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaattgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagtaagtttcaaaaacattaaatggataaatcaaaccatttttttttaagataataaggaatctgtcttgaataaagtaagtgtttttgtctcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagatcaaagatgtccgctctgtaatgtgttatacatgatcatcagtaaaagagctagtaactaataatcattatgtatgctcaaaatagactgtaagtatttttaaaaataaacaagatatacttcttatttgcataacaatgccgcacatattgttgtttat
gi|33 : taagataaatcgtaagggatgattactggatcaagtatagcattatttctcgttggttcagtaatcacgttcattgatgagttttggtaA-GATGTGTTTCAGT-A--AAACATAACATGTCATAC-TTTAA--GTAA-----T-TAT-CTTTGAT-AT--AG-TC-G--AAG-----------TTATTTCTAATACGACGCATATT-TGGTACAATATTGAGA-AGCATTGA----TTGT-TC
gi|4 : AAG-----A---AATT-TCT-TT-AAATTA-TGAAAGTT---ATTG-TTAAGCAAATCTTCATTAAGATCTCCA---AGTAAAATCAAATTCTTGGACATTTCATAA-GCTGTTTCGATATTATTATTAAGGCTGTTA-A--AG-AA-G---TCTGC---A--CCA-GCTATTTTAGGG-CT-TAAAATACGCC---T---AAT--A-A--AA-AA-ATGTTTTGTCCC---GAT-TTAACCTTAAC-CCAGATAGATACATTAC-AAATGTTTCCA-G---AT--------TTGGAACTCT-TGAATGAATTA-TA-TCT-----T--T-GCTAAATATATCAAA-ATA-CCC-CC-ACCA-TGATTTGT---T---CTATCTTTGCGGTAAGGTTCATCAAATTTATC-A-------CTA-AG-TTT-CA-ATAAATC-ATAAGAGACGTGT-GTATTTA-AGTGCGTTTCAGT-A--AATGATACAATATCAAAA-TATGA--AAGA-----G-TGT-AA--AAT-ACATAA-TC-A--ATC-----------TT-------ATACTTCTAATGTTGTAATGAAAAAAGGACAAACTAT--G----AGAT-TCA--TTGCCAGG-ACCCGGGTTTGTTTCAAAATCCCAAACTTCTAATAA-AA-TCAGAAGTAAAATAAAC-AT-AAA--TTCTATA-----TTT-TGAACAAATTCAC
gi|5 : aaagttagttttatcatagagcaatcctgatctttcataagtatgatcagtactatataaaaaaggtaaaataatgattacagctttatgatcactaatatcaggaggtacacgaatagtacctgcattgagataagataaatcgaaaaggatgattactggatcaagtatagcattatttctcgttggttcagtaataaaattcattaatgagttttggtaTAATATTTCTAATATTACAGTGTAAAATCGATAGAACAT--G----T-GTATCGT-TTGTC-GG-TCCGGGATTGCTCTCTATGTCTCCTCCATTCACAAG-TA-GCAGTAAAAGAATTATC-TT-AAA--ATCAACT-----TTA-TCGACAAAATCACTCAA-----AATTGTATCAACAAGAGAG--GTA--ATTCTAAATAA---TATTTAGAA-T--T----------ACC----T--CTAATAA--A-ATC-AAA-A---T-AC------C-A-AGTTTTGTTAACGATACCTTG-AAA---ATT-----AGTGTACAA----T----GTGC-----CAATA---TCTTACGGCCATGAAATAAACCGATGGCGGCTCTCCATGTACAGATGTCATTACCCATTGGGTAG--------TAACACTAA-AGAAAGG-A---TCACACA---AGA----GGCCACCATCATTCCATATAC-ATA-CACAgtagtattaa
gi|6 : TATAGTATTG---A-TA-AGTAAGTT-TAAG-----GTTAATATATCT-TTCAGGTTA-TGGAA-TG---ATGAGTTTAGAAGGTTTTCATTAAAATCACCT---AGGACGACGATATT--------TTTCATAA-GCCTTCTCAATATTCACATTCAGGTTATCG-A--AA-AACG---TG-GT---A--TCT-GCGGTTTTGGGA-CTATAGAACACACC---TTATAGT--A-T--A-----TTTTC--ATTTTTG-ATT-TTGACATTTAT-CCAAATTAATTCGTTATAAAATATTTCCA-A---GT---CAT--TTCG---CCT-GGAATGAATAA-CA-CTA-----T--TTGAAACATAAAT-AAGTATC-CCC-CC-TCCA-TGATTAGA---A---CGGTCCTTTCAATAAAATATATCAAAGTTTTC-A-------TTA-AG-TAT-TA-A-AGAGTCATTTGGTATCTGA-TTATCAA-GGTGAGTTTCA-T-AACAAACAAAGAATATCATGG-TCTAA--AAGG-----T-TTT-CAACAATAA---AA-CT-T--ATCATTATAATTTATTATTTATAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---G----T------------C--AG-TCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGTAATAAAATTATC-TT-AAA--ATCAACT-----CTA-TCAACAAAATCACTCAA-----AATTGTATTAACAATAGAG--GTA--ATTCTAAAT-A---TATT--GTC-TAATAGTC-AGTATACCAAGTTTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGAgaaaaaatactgagaatgccagccagtaatagagagatgagagcagaagtagacaactgagagataattaagagaaaataaagactgtatttgaaaaacattatatatacaagcttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaacatttatttgttttttaagataataaagaatctgtcttgaataaagtaagtgtttttgtctcaccaggtgttcaaaagtcttaaagaacacggatatatatgcatacatatgtagcagacgtaagcatgcctgtacatacaaatatcaacatacacatgcgtatatatatacacatacagaatgataacaaagatcaaa
gi|7 : ctggtgggttcattAAGTTTTCATTAAAATCACCT---AACAAGACGATATCTTTACATGTTTCATTG-ATCTTCTCCATACTTGCATTTAGGTTATGA-A--AACAA-ACGTTCT-----A--TCT-GCAGTT--GGGGACTATAGAACACATC---T---AAT--A-G--TATAT-TT-TC--ATTTT--------TGATTTTG--------T-GATTCGTTGCAAAATATTTGCG-A---GT---CAC--TTAG---CAT-GGTATGAATAG-TA-CCA-----T--TTGAAACCTAAAT--AC-GTA-TCC-CC----A-CGATTAAA---A---TGGTCCTTTCTATAAAATATATAAATATTCTC-A-------TTA-AA-TATTAA-A-CTGCC-ATTTAGTATCTGG-TTATCAA-GATGAGTTTCAGT-A--AAACAAAGAATACCACGA-TCTCA--AAGG-----T-TTT-CAGAAAT-A---AAATT-T--ATC-----------TTATTTCTTATACTTCTTATATTACAATGTAAAACCGATAAAACAT--A----TTCA-TCGT-CTGT--GGGTCAAGCATTGCTTTCCATGTCTCTTGCATACAAAAG-CA-GCAGTAATAAAACTATC-TTCAAA--TCCAA-------TTAATCAACAAAATCATTCAA-----AATGGTATCAACA--AGAG--AGATTACTCT---------TATT--G-T-A--TTGTC-----------------TAA-AA---------AACA-----GTAAA-CAT-A-GTGT-TGTTAAAGATACCTT--AAAA--ATT-----AGTTTACAA----T----GTGC-----CAATA---TGCTACAGCCATTATATAGAC
gi|8 : gtattggaatggtaatattatatatcattcaggtgttggaaagacgaTAATACTTCTAATATTACAGTGTAAGATCGATAGAACA---------------GT-C-----AG-TCCGGGATTGCTCTCTATGTCTCCTGCATTCAAAAG-AA-GCAGTAATAAAATTATC-TT-AAA--ATCAACT-----CTA-TCAACAAAATCACTCAA-----AATTGTATTAACAATAGAG--GTA--ATTCTAAAT-A---TATT--GTC-TAATAGTC-AGTATACCAAGTTTGTTAA-AGATACCTT-GAAAA---T-AAGTG-TAT-A-ATGTG-----------CC----AA---------------------------------------T---A---TGCTACGGCCATTAAATAGACCGATG
gi|8 : CACTAA-AGAAAGG-A---TCACACA---AGA----TGTCACCATCATTCCATATAC-ATA-CACAAAA-AAAATACTGAGAATGCCAG--CCAGTAATAG--AG--AGA---------TGAAAGCAGAttacactaaagaaaggatcacacaagatgtcaccatcattccatatacatacacaaaaaaaatactgagaatgccagccagtaatagagagatgaaagcagaagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
gi|9 : taatacttctaatattacagtgtaagatcgatagaacagtcagtccgggattgctctctatgtctcctgcattcaaaagaagcagtaataaaattatcttaaaatcaactctatcaacaaaatcactcaaaattgtattaacaatagaggtaattctaaatatattgtctaatagtcagtataccaagtttgttaaagataccttgaaaataagtgtataatgtgccaatatgctacggccattaaatagaccgatgttaAGATTGTCTGTTACTCC-TAATGCCTTTTCAATATTTATATTAAAATTAGTA-A--AA-AA-A---TCTGC---A--TCT-GCAGTTTTGGGG-CTATAAAACAATCC---T---AGT--A-G--AATAT-TTGCAT-ATTTA---GTA-TTGAATTTAAC-CCATATCAATTCGTTGCAAAATGTTTTTA-A---TT---AAA--AACA---TCT-AGAATTAATTA-AA-TTC-----C--ATGACATATAAA-CAAG-AAAGCCC-CC-TCCA-CGACTTGT---A---CAAT-TTTTCTGTAAGCAATGTCTAACTTGTC---------TGACAGATGT-AG-T-AGACT-ATCAGGAATGTAT-TGGTCAA-GATGTGTTT-ATG-A--AAACATAGACTATCATAA-TCCAA--AAAG-----T-GAT-CAATAAT-A---------T--A-C-----------TTATTTCTTATACTTCTAATGTTACAATGTTATATTGATAAACTGT--GTAAATTGT-ACGT----T--GG-TCCCGGGTTTCTTTCAATATTTCCTGCTTGTAAAAG-GA-GGAGCAATAAAACAATC-TT-AAA--ATC--TGTTTTTTTG-TTAATAAAATCCTTTGA-----TATT-TATT-GCA---------------TTTGAAC-----TATT--CCTCT--TTG-C-G----ACCA--GT--T-----------------CA---T-TTATAGTATAA-ATATGTAT----AA---C----AAATGAAGC--GAAAATTTACAA---------GT-------------------------ATCAAATAAACC--TGGCGCCTCCCCATGAACTTATATCACTACCCAATGGGTAagtagacaattgagagacaattaagagaaaataaagactgtatttgaaaaacattatatatacaagtttgagtcgagtaggagtaaaccaaagttagtttcaaaaatattaaatggataaatcaaataattttttttaagataataaaggatctgtcttgaataaagtaagtgttttgtctcaccaggtgttcaaaatacttaaagaacacggatatatatgcatccatatgtagcagacgtaagcatgcatgtacatacagataccaacatacacatgcgtatatatatatacatacagtatgataacaaagatcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): AACTTGCTCTTTTATATAGCGTAATATTTACCTAATAAGAAAGGTTTATTTCATAAGAAAAGGGAAGTACCTGATAGTTATTTTGTAATTGCTGATGTTTGTGGTGAAACTTTAAAGTTCCAGATTTAATATAAATTAGCCTATGTAGAATTAAAATAGATCCAATAAAGCCTTAAAACGTGTTTGTTCATTAATAGCATTCTTCAATGGGT
Unaligned ( gi|29 ): AGATGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCTTCTGGAATTAAAATGGGATCTAAAATAGCTCCCATACGTGTGGTTTCATTTACTGTATTTATTAATGAGTTTGTGCTTAGCATTTCTCTTAGACTGTGATAATTCGGACTCATTAAA
Unaligned ( gi|30 ): ATGTCCGCTCTGTAATGTGTTATACATGATCATCAGTAAAAGAGCTAGTAACTAATAATCATTATGTATGCTCAAAATAGACTGTAAGTATTTTTAAAAATAAGCAATGCATAACAATGCCGCACATATTGTTGTTT
Unaligned ( gi|32 ): TCAGGAGGTACATGGATTATACCTGCATTGAGATAAGATAAATAGTAAGGGATGATTACGGGATCAGGTATAGCATTATTTACCGTTGGGTTAGTAATAACGTTCATTAATGAGTTTTAGTAAAG
Unaligned ( gi|34 ): TATGCCTGAGTCTGTATAAGGCATATCTTGTGGAATAATTATGGGGTCAAGTGGATTCCTGTGGGCTCGTGTAAAG
Unaligned ( gi|35 ): TCAGGTGGGACTGGAAGCGTACCAGATTCGATATAACGAAGGTCCTCTGGAATTAAAATGGGATCTATAATAGCT
Unaligned ( gi|36 ): TTCATTTATAGTATTGATAAGTGAGTTTAAAGTTAATATGTCTTTCAGGTTATGGAAT
Unaligned ( gi|37 ): ATATGGCATATCATATGGTACAATGATTGGATATAGAAAAGCTCGATTAT