lowQualScore : 2222 1 11111 33333333333333333333333333333 9999999999999999999999999999999999999999999999999999999999999999999999999 1
lowQualScore : 5 2 66 6666 2 2 8 1 33 555 1111 33 1 0 3 5 11 33333 555 88888888888888888888888888888 6666666666666666666666666666666666666666666666666666666666666666666666666 55 4 0 2 44 2 0 3 2 0 99 3
lowQualScore : . . .. .... . . . . .. ... .... .. . . . . .. ..... ... ............................. ......................................................................... .. . . . .. . . . . . .. .
lowQualScore : 7 7 33 8888 7 7 0 7 99 000 1111 99 6 3 8 0 77 55555 444 22222222222222222222222222222 4444444444444444444444444444444444444444444444444444444444444444444444444 00 2 3 7 66 2 5 0 9 4 22 2
consensus : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAGCAATATACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTGGGAGAGAGAGANGANGAGNNATGNNNATNGNGAGNNNNNTG-A-----TGA--------TGATGA-----T--GATTAATCATGTTCACTATA--AGATCAATACATATTGATGTTGATTATNTAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
Reference ( gi|4 ) : TTACCAAATGGCAACCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAACAATACACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-A-----TGA--------TGATGA-----T--GATTACTCATGTTCATTATA--AGATTAATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|3 : TTGCCAAATGGCAGCACGTTTAT-T--TT-TTTC-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAACAATATACATTTATAAACATGAGTACTATAA-G---C---AGTGA--------------T---G----------TGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNTGA--------TGATGA-----T--GATGAATCATGTTCATTGTA--AGATCAATACATATTGATGTTGATTATATAAATTTGC-ATATTTGATTATTCAAATTTTATTGAATGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCT-GCTTGGGCTAAGATTT
gi|2 : ttttttttTTACCAAATGGCAGCCCTTTTATGT--TT-TT-C-ATTTTCAC-AT-TAACACGTT--A---T-----------------ATACATTTA-AAACAGGAGTAATATAA-GT--C---AGTGTAGTAAAAA------T---GATAGAGAGACTGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNN--------NNNNNN-----TCTGATTAATCATGTACACTATA--AGGTTAATACATACTGATGTTGATTATCTAAGGTTGCTGTTTCTGATTATTCAAATTTTATTAAATGCCATTACCTATTATGAG--TTTCTAATTTGAATCTCGCTTAAGCTAAGATTT
gi|13 : tttttttagTTACCAAATGGCAGCCTGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAACAATACACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGattctatgtttttacattctcttaaatatcaaagatagttgtcaaagcttggtgtattgcttggtgtatcgttttgc
gi|14 : ttttttttttgagTTACCAAATGGCAGCCCGTTTTT-T--TT-TT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAACAATACACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG
gi|6 : tgtttttttgagTTACCAAATAGCAGTCCGTGTGT-T--TT----C-ATTTTCAC-AT-AAACAAGTT--AAATTG---TATA--TAGTTTTATACATTTA-AAACAGGATTAATATAA-TT--C---AGTGT--------------A---G----------TGAAACAGTGAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTG-A-----T---------------------T--AATTAC----GTACACTATT--AGATCAATACATATTAATGTTGATTATCTAAGGTTACTATTTCTAATTATTTAAATTGTATTGAACGCCATTTCCTATTATACG--TTTCTAGTTTGGAT
gi|8 : tctttttttagTTGCGAAATGGCAGCCGGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAATAATACGCATTTATAAATATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTGAGAGAGAGAGATGATGAATCATGTTCATTATAAGTTCAATACA-----TAT--------TAATGT-----T--AATTATATAAGGTTGCTATATTGGATT-ATTCATATT
gi|19 : tttgggttttttggggggtttttttagTTACCAAATGGCAGCCCGTTTAT-T--TTTTT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAACAATACACATTTAttatt
gi|22 : tttctttttttgagTTGCCAAATGGCAGCACGTTTAT-T--TT--T-C-ATTTTCAC-AT-TATCAAGTattaca
gi|11 : ttttttttttgagTTACCAAATGGAAGCCTGCTTAT-CCATG-TT-C-ATTATCAC-ATGTACAAAGTT--A---CATTGTACA--TAGTAACATGTACTTA-AAACAGGAGTGATATGATT---T---ACTGT--------------A---G----------TCAAAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----TGA--------T---------------TTA-TTATGTACAATATT--GGATCAATACATATTGATGTTGATTA
gi|12 : tttgTTACCAAATATAAGTCCATTTA-----TT-TT-C-GTTTTCAC-AT-AAACAAA----G---T----TACA--TAGTAGTATATATTTA-AAACAAGAGT--TATGT-GATTC---AGTGA--------------C---G----------TGAAAAT
gi|10 : ctttttttagTTACCAAGTGGTAGCTCGTTTA-----TT-TT-CAATGTTCAC-ATATATCAAAGT--A---CATTGTACA--TAATATTCTGCCTTTAAAAA---AAGTACTACGATT---T---AGTGT--------------A---G----------TGAAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatctgattaattatgtacactacgttcatgtatatactgtgtt
gi|16 : aatgtatatatttccttatatatatgaagagataatacatataatacaaacatgataaatggaaactatttgaagagatttatacataagtacaattgttttagTTATCAAATTGTATCCCGTTT--------------ATTTTCAC-AT-AAACAAGTTTCA---T----TATACTTAGTAATATACATTT-TAAACAGGCGTAagagagaa
gi|17 : cctttcttttttttccTTACCAAGTGGTGA-----TTAT-T--TT----C-ATTTCCAC-ACATACAAAGTT--A---CATTGTACA--CAGTATTATGCATTTA-AAACAAGAGT--TACAT-G---CTTTAGTGG--------------A---G----------TGAAAaaaaactactttatagtga
gi|1 : atttttttaagTACAAAATGGCAGCCCGTTTAT-T--AT-T--C-ATTTTCACCAT-TAACAAATT--A---T----TACA--TAGAAATATACATTTAAAAACAGGAGTGATATAA-G---C---AGTGTAGTAAAAAATGATATAGAG----------TGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNN--------NNNNNNNTATCT--GATTAATCATGTTCACTACA--AGATCTATACATATTGATGTTGATTATCCAAGGTTGCTATATTTGATTATTCAAATTTTATTGACTACCATTTCCTATATTGCGTTTTTCTAGTTTGGATATTGCTCGGGCTAAGATTT
gi|5 : cttttgtttctggggAGCCCGTTTAT-TG-TT-TT-C-ATTTTCAC-AT-TATCAAGTT--A---T----TATA--TAACAATACACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGT-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----TGA--------TGATGA-----T--GATTAATCATGTTCATTATA--AGATCAATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTTgttctatgtttttaaattctcttaaatatctaagatgtcaaagcaaagcttggtatatcactttgcattttacatttaagaaatgaaatatcttgcaaaaaaaaataacaaaatttatcataatttttgttttgtgttgtcgtcgtggatgtccaatgatatattgttcaaattaaatgctacattaagcccgttttgt
gi|9 : ACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNNNNNNNNNNTGATGA-----T--GATT------------TATA--AGATCAATACATATTGATGTTAATTATATAAGGTTGCTATATTAGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|8 : GA-----T--GATGAATCATGTTCATTATA--AGTTCAATACATATTAATGTTAATTATATAAGGTTGCTATATTGGATTATTCATATTTTATT
gi|20 : tttgggttttttggggggtttttttagttgcgaaatggcagccggtttattttttcattttcacattatcaagttattatataataatacgcatttataaatatgagtactataagcagtgttgtgaaaatgtgtgtgagagagagaA-----T--GATGAATCATGTTCATTATA--AGATCAATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATAATTCAAATTTTATTGAG
gi|23 : --GATTAATCATGTTCACTATA--ATATCAATACATATTGATGTTGATTATCTAAGG
gi|18 : ACTATT--AGAATAATACATATTGATGTTGATTATCTAAGGTT--TTTATTG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TATCTAGACATTTAGACGCTTTCTTATTATTCGTTTATATTTCGATTTCTTTTGACCTTAAATTTGTTCCATATAATAACATTCTTAGATATTGAAGATTGCTGTCAAAGTTAGTTGCACTGTTTTGCATTTTTCTTTTCAAAATAAAATATTTTGCCAAAATATGACATAATCTATTTTTGTTTGATGTAATCGTCACAGAAGCCTAGTGATACATATTTGAATTTACACATTGCATCA
Unaligned ( gi|15 ): CAGGAGAAATATAATTCAGTGTGGTGTTAATGATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGAGATTTAATTACTTATGTACACTTTTAGATCAATAC
Unaligned ( gi|21 ): ATTATATATGCATGTTACGTGTCAAACAATCTACGTAACAGTTTATATATTGCATACAACATATACT
Alignments
lowQualScore : 1111 1 11111 33333333333333333333333333333 11111 444444444444444444444444444444444444444444444444
lowQualScore : 2 55 5555 2 2 7 1 2 2 33 444 4444 33 33 444 2 1 0 11111 555 44444444444444444444444444444 1 88888 1 1 222 333333333333333333333333333333333333333333333333 44 3 0 3 555 3 1 1 77 1
lowQualScore : . .. .... . . . . . . .. ... .... .. .. ... . . . ..... ... ............................. . ..... . . ... ................................................ .. . . . ... . . . .. .
lowQualScore : 5 99 2222 5 5 5 0 5 5 77 777 0000 77 33 777 2 9 7 88888 000 11111111111111111111111111111 1 77777 0 0 999 333333333333333333333333333333333333333333333333 22 1 8 1 000 1 0 0 99 0
consensus : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTGGGAGAGAGAGAGGANGAANAATGNNNATNGNGAGNGANCTG-A-----TGA--------TG-ATGA-----T--GATTA-ATCATGTTC-ACTATA--AGATCA-ATACATATTGATGTTGATTATNTAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
Reference ( family-295 ) : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTGGGAGAGAGAGANGANGAGNNATGNNNATNGNGAGNNNNNTG-A-----TGA--------TG-ATGA-----T--GATTA-ATCATGTTC-ACTATA--AGATCA-ATACATATTGATGTTGATTATNTAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|1 : TACAAAATGGCAGCCCGTTTAT-T--AT-T--C-ATTTTCACCAT-TAAC-AAAT-T--A---T----TACA--TAGAAATA---TACATTTAAAAACAGGAGTGATATAA-G---C---AGTGTAGTAAAAAATGATATAGAG----------TGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNN--------NN-NNNNNTATCT--GATTA-ATCATGTTC-ACTACA--AGATCT-ATACATATTGATGTTGATTATCCAAGGTTGCTATATTTGATTATTCAAATTTTATTGACTACCATTTCCTATATTGCGTTTTTCTAGTTTGGATATTGCTCGGGCTAAGATTT
gi|10 : cttttgtttctggggTTACCAAGTGGTAGCTCGTTTA-----TT-TT-CAATGTTCAC-ATATATCAAAGTAC--A---T----TGTA--CA-TAATATTCTGCCTTTAAAAA---AAGTACTACGATT---T---AGTGT--------------A---G----------TGAAAAT--------GAGAGAGAgttctatgtttttaaattctcttaaatatctaagatgtcaaagcaaagcttggtatatcactttgcattttacatttaagaaatgaaatatcttgcaaaaaaaaataacaaaatttatcataatttttgttttgtgttgtcgtcgtggatgtccaatgatatattgttcaaattaaatgctacattaagcccgttttgt
gi|11 : aatgtatatatttccttatatatatgaagagataatacatataatacaaacatgataaatggaaactatttgaagagatttatacataagtacaattgttttagTTACCAAATGGAAGCCTGCTTAT-CCATG-TT-C-ATTATCAC-ATGTACA-AAGT-T--A---CATTGTACA--TAGTAACA---TGTACTTA-AAACAGGAGTGATATGATT---T---ACTGT--------------A---G----------TCAAAAT----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNN--------NN-NNNN-----T--GATTT-ATTATGTAC-AATATT--GGATCA-ATACATATTGATGTTGATTAa
gi|12 : tttgTTACCAAATATAAGTCCATTTA-----TT-TT-C-GTTTTCAC-AT-AAAC-AAA-----G---T----TACA--TAGTAGTA---TATATTTA-AAACAAGAGT--TATGT-GATTC---AGTGA--------------C---G----------TGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNN--------NNTAT-C-----T--GATTA-ATTATGTAC-ACTAC----GTTCATGTATATACTG-TGTT
gi|13 : ctttttttagTTACCAAATGGCAGCCTGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTG
gi|14 : ttttttttttgagTTACCAAATGGCAGCCCGTTTTT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG
gi|16 : tgtttttttgagTTATCAAATTGTATCCCGTTT--------------ATTTTCAC-AT-AAAC-AAGT-TTCA---T----TATACTTAGTAATA---TACATTT-TAAACAGGCGTA
gi|17 : cctttcttttttttccTTACCAAGTGGT-----GATTAT-T--TT----C-ATTTCCAC-ACATACA-AAGT-T--A---CATTGTACA--CAGTATTA---TGCATTTA-AAACAAGAGT--TACAT-G---CTTTAGTGG--------------A---G----------TGAAAaaaaactactttatagtga
gi|18 : atttttttaagGGAGAGAGAGGGGAAAAAGAATG---------AGAGATCTG-A-----T----------TA-ATTA-----T----CTA-AAC-TATTAGACTATT--AGAATA-ATACATATTGATGTTGATTATCTAAGGTTTTTAT
gi|19 : TTACCAAATGGCAGCCCGTTTAT-T--TTTTT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTAtgc
gi|2 : tttctttttttgagTTACCAAATGGCAGCCCTTTTATGT--TT-TT-C-ATTTTCAC-AT-TAAC-ACGT-T--A---T-----------------A---TACATTTA-AAACAGGAGTAATATAA-GT--C---AGTGTAGTAAAAA------T---GATAGAGAGACTGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNN--------NN-NNNN-----TCTGATTA-ATCATGTAC-ACTATA--AGGTTA-ATACATACTGATGTTGATTATCTAAGGTTGCTGTTTCTGATTATTCAAATTTTATTAAATGCCATTACCTATTATGAG--TTTCTAATTTGAATCTCGCTTAAGCTAAGATTTattaca
gi|20 : tttttttagA-----T--GATGA-ATCATGTTC-ATTATA--AGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATAATTCAAATTTTATTGAGattctatgtttttacattctcttaaatatcaaagatagttgtcaaagcttggtgtattgcttggtgtatcgttttgc
gi|22 : TTGCCAAATGGCAGCACGTTTAT-T--TT--T-C-ATTTTCAC-AT-TATC-AAGT-
gi|23 : ttttttttttgag--GATTA-ATCATGTTC-ACTATA--ATATCA-ATACATATTGATGTTGATTATCTAAGG
gi|3 : TTGCCAAATGGCAGCACGTTTAT-T--TT-TTTC-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---TACATTTATAAACATGAGTACTATAA-G---C---AGTGA--------------T---G----------TGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNTGA--------TG-ATGA-----T--GATGA-ATCATGTTC-ATTGTA--AGATCA-ATACATATTGATGTTGATTATATAAATTTGC-ATATTTGATTATTCAAATTTTATTGAATGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCT-GCTTGGGCTAAGATTT
gi|4 : ttttttttTTACCAAATGGCAACCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-A-----TGA--------TG-ATGA-----T--GATTA-CTCATGTTC-ATTATA--AGATTA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|5 : AGCCCGTTTAT-TG-TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGT-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----TGA--------TG-ATGA-----T--GATTA-ATCATGTTC-ATTATA--AGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|6 : TTACCAAATAGCAGTCCGTGTGT-T--TT----C-ATTTTCAC-AT-AAAC-AAGT-T--AAATTG---TATA--TAGTTTTA---TACATTTA-AAACAGGATTAATATAA-TT--C---AGTGT--------------A---G----------TGAAACAGTGAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTG-A-----T----------------------------TA-ATTACGTAC-ACTATT--AGATCA-ATACATATTAATGTTGATTATCTAAGGTTACTATTTCTAATTATTTAAATTGTATTGAACGCCATTTCCTATTATACG--TTTCTAGTTTGGAT
gi|8 : tctttttttagTTGCGAAATGGCAGCCGGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAATAATA---CGCATTTATAAATATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTGAGAGAGAGAGATGATGAATCATGTTCATTATAAGTTCAATACA-----TAT--------TA-ATGT-----T--AATTATATAAGGTT--GCTATATTGGATT--ATTCATATT
gi|9 : tttgggttttttggggggtttttttagACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-----NNNNNNNNNNNTG-ATGA-----T--GATT--------------TATA--AGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTAGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTTttatt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATCTAGACATTTAGACGCTTTCTTATTATTCGTTTATATTTCGATTTCTTTTGACCTTAAATTTGTTCCATATAATAACATTCTTAGATATTGAAGATTGCTGTCAAAGTTAGTTGCACTGTTTTGCATTTTTCTTTTCAAAATAAAATATTTTGCCAAAATATGACATAATCTATTTTTGTTTGATGTAATCGTCACAGAAGCCTAGTGATACATATTTGAATTTACACATTGCATCA
Unaligned ( gi|15 ): CAGGAGAAATATAATTCAGTGTGGTGTTAATGATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGAGATTTAATTACTTATGTACACTTTTAGATCAATAC
Unaligned ( gi|21 ): ATTATATATGCATGTTACGTGTCAAACAATCTACGTAACAGTTTATATATTGCATACAACATATACT
Alignments
lowQualScore : 1111 1 11111 33333333333333333333333333333 777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2 55 5555 2 2 7 1 2 2 33 444 4444 33 33 444 2 1 1 44444 444 77777777777777777777777777777 777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 2 2 1 2 1 1 77 1
lowQualScore : . .. .... . . . . . . .. ... .... .. .. ... . . . ..... ... ............................. ................................................................................. .. . . . . . . .. .
lowQualScore : 5 99 2222 5 5 5 0 5 5 77 777 0000 77 33 777 2 9 7 77777 777 11111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 0 9 9 9 0 0 99 0
consensus : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTTC-ACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
Reference ( family-295 ) : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGGANGAANAATGNNNATNGNGAGNGANCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTTC-ACTATAAGATCA-ATACATATTGATGTTGATTATNTAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|1 : TACAAAATGGCAGCCCGTTTAT-T--AT-T--C-ATTTTCACCAT-TAAC-AAAT-T--A---T----TACA--TAGAAATA---TACATTTAAAAACAGGAGTGATATAA-G---C---AGTGTAGTAAAAAATGATATAGAG----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNNNTATCT--GATTAATCATGTTC-ACTACAAGATCT-ATACATATTGATGTTGATTATCCAAGGTTGCTATATTTGATTATTCAAATTTTATTGACTACCATTTCCTATATTGCGTTTTTCTAGTTTGGATATTGCTCGGGCTAAGATTT
gi|10 : cttttgtttctggggTTACCAAGTGGTAGCTCGTTTA-----TT-TT-CAATGTTCAC-ATATATCAAAGTAC--A---T----TGTA--CA-TAATATTCTGCCTTTAAAAA---AAGTACTACGATT---T---AGTGT--------------A---G----------TGAAAAT------------GAGAGAGAgttctatgtttttaaattctcttaaatatctaagatgtcaaagcaaagcttggtatatcactttgcattttacatttaagaaatgaaatatcttgcaaaaaaaaataacaaaatttatcataatttttgttttgtgttgtcgtcgtggatgtccaatgatatattgttcaaattaaatgctacattaagcccgttttgt
gi|11 : aatgtatatatttccttatatatatgaagagataatacatataatacaaacatgataaatggaaactatttgaagagatttatacataagtacaattgttttagTTACCAAATGGAAGCCTGCTTAT-CCATG-TT-C-ATTATCAC-ATGTACA-AAGT-T--A---CATTGTACA--TAGTAACA---TGTACTTA-AAACAGGAGTGATATGATT---T---ACTGT--------------A---G----------TCAAAAT--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----T--GATTTATTATGTAC-AATATTGGATCA-ATACATATTGATGTTGATTAa
gi|12 : tttgTTACCAAATATAAGTCCATTTA-----TT-TT-C-GTTTTCAC-AT-AAAC-AAA-----G---T----TACA--TAGTAGTA---TATATTTA-AAACAAGAGT--TATGT-GATTC---AGTGA--------------C---G----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NNTAT-C-----T--GATTAATTATGTAC-ACTAC--GTTCATGTATATACTG-TGTT
gi|13 : ctttttttagTTACCAAATGGCAGCCTGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---G
gi|14 : ttttttttttgagTTACCAAATGGCAGCCCGTTTTT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-
gi|15 : tgtttttttgagCAGGAGAAATATAA-TT--C---AGTGT--------------G---G----------TGTTAATGATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGA-----------GA--------T---T-------T--AATTACTTATGTAC-ACTTTTAGATCA-ATAC
gi|16 : TTATCAAATTGTATCCCGTTT--------------ATTTTCAC-AT-AAAC-AAGT-TTCA---T----TATACTTAGTAATA---TACATTT-TAAACAGGCGTA
gi|17 : cctttcttttttttccTTACCAAGTGGT-----GATTAT-T--TT----C-ATTTCCAC-ACATACA-AAGT-T--A---CATTGTACA--CAGTATTA---TGCATTTA-AAACAAGAGT--TACAT-G---CTTTAGTGG--------------A---G----------TGAAAaaaaactactttatagtga
gi|18 : atttttttaagGGAGAGAGAGGGGAAAAAGAATG---------AGAGATCTGA-----T----------TA-ATTA-----T----CTAAAC-TATTAGACTATTAGAATA-ATACATATTGATGTTGATTATCTAAGGTTTTTAT
gi|19 : TTACCAAATGGCAGCCCGTTTAT-T--TTTTT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTAtgc
gi|2 : tttctttttttgagTTACCAAATGGCAGCCCTTTTATGT--TT-TT-C-ATTTTCAC-AT-TAAC-ACGT-T--A---T-----------------A---TACATTTA-AAACAGGAGTAATATAA-GT--C---AGTGTAGTAAAAA------T---GATAGAGAGACTGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----TCTGATTAATCATGTAC-ACTATAAGGTTA-ATACATACTGATGTTGATTATCTAAGGTTGCTGTTTCTGATTATTCAAATTTTATTAAATGCCATTACCTATTATGAG--TTTCTAATTTGAATCTCGCTTAAGCTAAGATTTattaca
gi|20 : tttttttagA-----T--GATGAATCATGTTC-ATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATAATTCAAATTTTATTGAGattctatgtttttacattctcttaaatatcaaagatagttgtcaaagcttggtgtattgcttggtgtatcgttttgc
gi|22 : TTGCCAAATGGCAGCACGTTTAT-T--TT--T-C-ATTTTCAC-AT-TATC-AAGT-
gi|23 : ttttttttttgag--GATTAATCATGTTC-ACTATAATATCA-ATACATATTGATGTTGATTATCTAAGG
gi|3 : TTGCCAAATGGCAGCACGTTTAT-T--TT-TTTC-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---TACATTTATAAACATGAGTACTATAA-G---C---AGTGA--------------T---G----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA--------TG-ATGA-----T--GATGAATCATGTTC-ATTGTAAGATCA-ATACATATTGATGTTGATTATATAAATTTGC-ATATTTGATTATTCAAATTTTATTGAATGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCT-GCTTGGGCTAAGATTT
gi|4 : ttttttttTTACCAAATGGCAACCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA-----TGA--------TG-ATGA-----T--GATTACTCATGTTC-ATTATAAGATTA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|5 : AGCCCGTTTAT-TG-TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GT-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TGA--------TG-ATGA-----T--GATTAATCATGTTC-ATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|6 : TTACCAAATAGCAGTCCGTGTGT-T--TT----C-ATTTTCAC-AT-AAAC-AAGT-T--AAATTG---TATA--TAGTTTTA---TACATTTA-AAACAGGATTAATATAA-TT--C---AGTGT--------------A---G----------TGAAACAG-T---GAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTGA-----T----------------------------TAATTACGTAC-ACTATTAGATCA-ATACATATTAATGTTGATTATCTAAGGTTACTATTTCTAATTATTTAAATTGTATTGAACGCCATTTCCTATTATACG--TTTCTAGTTTGGAT
gi|8 : tctttttttagTTGCGAAATGGCAGCCGGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAATAATA---CGCATTTATAAATATGAGTACTATAA-G---C---AGTGT-------------------------------------------TGTG-----------------AAAATGTGTGT-GAGAGAGA-----------GA---------G-ATGA-----T--GA---ATCATGTTC-ATTATAAGTTCA-ATACATATTAATGTTAATTATATAAGGTTGCTATATTGGATTATTCATATTTTATT
gi|9 : tttgggttttttggggggtttttttagACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNTG-ATGA-----T--GATT-------------TATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTAGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATCTAGACATTTAGACGCTTTCTTATTATTCGTTTATATTTCGATTTCTTTTGACCTTAAATTTGTTCCATATAATAACATTCTTAGATATTGAAGATTGCTGTCAAAGTTAGTTGCACTGTTTTGCATTTTTCTTTTCAAAATAAAATATTTTGCCAAAATATGACATAATCTATTTTTGTTTGATGTAATCGTCACAGAAGCCTAGTGATACATATTTGAATTTACACATTGCATCA
Unaligned ( gi|21 ): ATTATATATGCATGTTACGTGTCAAACAATCTACGTAACAGTTTATATATTGCATACAACATATACT
Alignments
lowQualScore : 1111 1 11111 33333333333333333333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 2 55 5555 2 2 7 1 2 2 33 444 4444 33 33 444 2 1 1 44444 444 22222222222222222222222222222 888888888888888888888888888888888888888888888888888888888888888888888888888888888 33 44 1 2 1 1 77 1
lowQualScore : . .. .... . . . . . . .. ... .... .. .. ... . . . ..... ... ............................. ................................................................................. .. .. . . . . .. .
lowQualScore : 5 99 2222 5 5 5 0 5 5 77 777 0000 77 33 777 2 9 7 77777 777 22222222222222222222222222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 99 9 9 9 0 99 0
consensus : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
Reference ( family-295 ) : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|1 : TACAAAATGGCAGCCCGTTTAT-T--AT-T--C-ATTTTCACCAT-TAAC-AAAT-T--A---T----TACA--TAGAAATA---TACATTTAAAAACAGGAGTGATATAA-G---C---AGTGTAGTAAAAAATGATATAGAG----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNNNTATCT--GATTAATCATGTT-CACTACAAGATCT-ATACATATTGATGTTGATTATCCAAGGTTGCTATATTTGATTATTCAAATTTTATTGACTACCATTTCCTATATTGCGTTTTTCTAGTTTGGATATTGCTCGGGCTAAGATTT
gi|10 : cttttgtttctggggTTACCAAGTGGTAGCTCGTTTA-----TT-TT-CAATGTTCAC-ATATATCAAAGTAC--A---T----TGTA--CA-TAATATTCTGCCTTTAAAAA---AAGTACTACGATT---T---AGTGT--------------A---G----------TGAAAAT------------GAGAGAGAgttctatgtttttaaattctcttaaatatctaagatgtcaaagcaaagcttggtatatcactttgcattttacatttaagaaatgaaatatcttgcaaaaaaaaataacaaaatttatcataatttttgttttgtgttgtcgtcgtggatgtccaatgatatattgttcaaattaaatgctacattaagcccgttttgt
gi|11 : aatgtatatatttccttatatatatgaagagataatacatataatacaaacatgataaatggaaactatttgaagagatttatacataagtacaattgttttagTTACCAAATGGAAGCCTGCTTAT-CCATG-TT-C-ATTATCAC-ATGTACA-AAGT-T--A---CATTGTACA--TAGTAACA---TGTACTTA-AAACAGGAGTGATATGATT---T---ACTGT--------------A---G----------TCAAAAT--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----T--GATTTATTATGTA-CAATATTGGATCA-ATACATATTGATGTTGATTAa
gi|12 : tttgTTACCAAATATAAGTCCATTTA-----TT-TT-C-GTTTTCAC-AT-AAAC-AAA-----G---T----TACA--TAGTAGTA---TATATTTA-AAACAAGAGT--TATGT-GATTC---AGTGA--------------C---G----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NNTAT-C-----T--GATTAATTATGTA-CACTAC--GTTCATGTATATACTG-TGTT
gi|13 : ctttttttagTTACCAAATGGCAGCCTGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---G
gi|14 : ttttttttttgagTTACCAAATGGCAGCCCGTTTTT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-
gi|15 : tgtttttttgagCAGGAGAAATATAA-TT--C---AGTGT--------------G---G----------TGTTAATGATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGA---GA-----T----------T-----------T--AATTACTTATGTA-CACTTTTAGATCA-ATAC
gi|16 : TTATCAAATTGTATCCCGTTT--------------ATTTTCAC-AT-AAAC-AAGT-TTCA---T----TATACTTAGTAATA---TACATTT-TAAACAGGCGTA
gi|17 : cctttcttttttttccTTACCAAGTGGT-----GATTAT-T--TT----C-ATTTCCAC-ACATACA-AAGT-T--A---CATTGTACA--CAGTATTA---TGCATTTA-AAACAAGAGT--TACAT-G---CTTTAGTGG--------------A---G----------TGAAAaaaaactactttatagtga
gi|18 : atttttttaagGGAGAGAGAGGGGAAAAAGAAT---------GAGAGATCTGA-----T----------TA-ATTA-----T----CTAAAC-TATTAGACTATTAGAATA-ATACATATTGATGTTGATTATCTAAGGTTTTTAT
gi|19 : TTACCAAATGGCAGCCCGTTTAT-T--TTTTT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTAtgc
gi|2 : tttctttttttgagTTACCAAATGGCAGCCCTTTTATGT--TT-TT-C-ATTTTCAC-AT-TAAC-ACGT-T--A---T-----------------A---TACATTTA-AAACAGGAGTAATATAA-GT--C---AGTGTAGTAAAAA------T---GATAGAGAGACTGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----TCTGATTAATCATGTA-CACTATAAGGTTA-ATACATACTGATGTTGATTATCTAAGGTTGCTGTTTCTGATTATTCAAATTTTATTAAATGCCATTACCTATTATGAG--TTTCTAATTTGAATCTCGCTTAAGCTAAGATTTattaca
gi|20 : tttttttagA-----T--GATGAATCATGTT-CATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATAATTCAAATTTTATTGAGattctatgtttttacattctcttaaatatcaaagatagttgtcaaagcttggtgtattgcttggtgtatcgttttgc
gi|22 : TTGCCAAATGGCAGCACGTTTAT-T--TT--T-C-ATTTTCAC-AT-TATC-AAGT-
gi|23 : ttttttttttgag--GATTAATCATGTT-CACTATAATATCA-ATACATATTGATGTTGATTATCTAAGG
gi|3 : TTGCCAAATGGCAGCACGTTTAT-T--TT-TTTC-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---TACATTTATAAACATGAGTACTATAA-G---C---AGTGA--------------T---G----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA--------TG-ATGA-----T--GATGAATCATGTT-CATTGTAAGATCA-ATACATATTGATGTTGATTATATAAATTTGC-ATATTTGATTATTCAAATTTTATTGAATGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCT-GCTTGGGCTAAGATTT
gi|4 : ttttttttTTACCAAATGGCAACCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA-----TGA--------TG-ATGA-----T--GATTACTCATGTT-CATTATAAGATTA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|5 : AGCCCGTTTAT-TG-TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GT-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|6 : TTACCAAATAGCAGTCCGTGTGT-T--TT----C-ATTTTCAC-AT-AAAC-AAGT-T--AAATTG---TATA--TAGTTTTA---TACATTTA-AAACAGGATTAATATAA-TT--C---AGTGT--------------A---G----------TGAAACAG-T---GAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTGA-----T----------------------------TAATTACGTA-CACTATTAGATCA-ATACATATTAATGTTGATTATCTAAGGTTACTATTTCTAATTATTTAAATTGTATTGAACGCCATTTCCTATTATACG--TTTCTAGTTTGGAT
gi|8 : tctttttttagTTGCGAAATGGCAGCCGGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAATAATA---CGCATTTATAAATATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAA--------TGTG---------------------TGT---GAGAGAGAGA----------------------G-ATGA-----T--GA---ATCATGTT-CATTATAAGTTCA-ATACATATTAATGTTAATTATATAAGGTTGCTATATTGGATTATTCATATTTTATT
gi|9 : tttgggttttttggggggtttttttagACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNTG-ATGA-----T--GATT-------------TATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTAGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATCTAGACATTTAGACGCTTTCTTATTATTCGTTTATATTTCGATTTCTTTTGACCTTAAATTTGTTCCATATAATAACATTCTTAGATATTGAAGATTGCTGTCAAAGTTAGTTGCACTGTTTTGCATTTTTCTTTTCAAAATAAAATATTTTGCCAAAATATGACATAATCTATTTTTGTTTGATGTAATCGTCACAGAAGCCTAGTGATACATATTTGAATTTACACATTGCATCA
Unaligned ( gi|21 ): ATTATATATGCATGTTACGTGTCAAACAATCTACGTAACAGTTTATATATTGCATACAACATATACT
Alignments
lowQualScore : 1111 1 11111 33333333333333333333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 2 55 5555 2 2 7 1 2 2 33 444 4444 33 33 444 2 1 1 44444 444 22222222222222222222222222222 888888888888888888888888888888888888888888888888888888888888888888888888888888888 33 44 1 2 1 1 77 1
lowQualScore : . .. .... . . . . . . .. ... .... .. .. ... . . . ..... ... ............................. ................................................................................. .. .. . . . . .. .
lowQualScore : 5 99 2222 5 5 5 0 5 5 77 777 0000 77 33 777 2 9 7 77777 777 22222222222222222222222222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 99 9 9 9 0 99 0
consensus : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
Reference ( family-295 ) : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|1 : TACAAAATGGCAGCCCGTTTAT-T--AT-T--C-ATTTTCACCAT-TAAC-AAAT-T--A---T----TACA--TAGAAATA---TACATTTAAAAACAGGAGTGATATAA-G---C---AGTGTAGTAAAAAATGATATAGAG----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNNNTATCT--GATTAATCATGTT-CACTACAAGATCT-ATACATATTGATGTTGATTATCCAAGGTTGCTATATTTGATTATTCAAATTTTATTGACTACCATTTCCTATATTGCGTTTTTCTAGTTTGGATATTGCTCGGGCTAAGATTT
gi|10 : cttttgtttctggggTTACCAAGTGGTAGCTCGTTTA-----TT-TT-CAATGTTCAC-ATATATCAAAGTAC--A---T----TGTA--CA-TAATATTCTGCCTTTAAAAA---AAGTACTACGATT---T---AGTGT--------------A---G----------TGAAAAT------------GAGAGAGAgttctatgtttttaaattctcttaaatatctaagatgtcaaagcaaagcttggtatatcactttgcattttacatttaagaaatgaaatatcttgcaaaaaaaaataacaaaatttatcataatttttgttttgtgttgtcgtcgtggatgtccaatgatatattgttcaaattaaatgctacattaagcccgttttgt
gi|11 : aatgtatatatttccttatatatatgaagagataatacatataatacaaacatgataaatggaaactatttgaagagatttatacataagtacaattgttttagTTACCAAATGGAAGCCTGCTTAT-CCATG-TT-C-ATTATCAC-ATGTACA-AAGT-T--A---CATTGTACA--TAGTAACA---TGTACTTA-AAACAGGAGTGATATGATT---T---ACTGT--------------A---G----------TCAAAAT--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----T--GATTTATTATGTA-CAATATTGGATCA-ATACATATTGATGTTGATTAa
gi|12 : tttgTTACCAAATATAAGTCCATTTA-----TT-TT-C-GTTTTCAC-AT-AAAC-AAA-----G---T----TACA--TAGTAGTA---TATATTTA-AAACAAGAGT--TATGT-GATTC---AGTGA--------------C---G----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NNTAT-C-----T--GATTAATTATGTA-CACTAC--GTTCATGTATATACTG-TGTT
gi|13 : ctttttttagTTACCAAATGGCAGCCTGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---G
gi|14 : ttttttttttgagTTACCAAATGGCAGCCCGTTTTT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-
gi|15 : tgtttttttgagCAGGAGAAATATAA-TT--C---AGTGT--------------G---G----------TGTTAATGATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGA---GA-----T----------T-----------T--AATTACTTATGTA-CACTTTTAGATCA-ATAC
gi|16 : TTATCAAATTGTATCCCGTTT--------------ATTTTCAC-AT-AAAC-AAGT-TTCA---T----TATACTTAGTAATA---TACATTT-TAAACAGGCGTA
gi|17 : cctttcttttttttccTTACCAAGTGGT-----GATTAT-T--TT----C-ATTTCCAC-ACATACA-AAGT-T--A---CATTGTACA--CAGTATTA---TGCATTTA-AAACAAGAGT--TACAT-G---CTTTAGTGG--------------A---G----------TGAAAaaaaactactttatagtga
gi|18 : atttttttaagGGAGAGAGAGGGGAAAAAGAAT---------GAGAGATCTGA-----T----------TA-ATTA-----T----CTAAAC-TATTAGACTATTAGAATA-ATACATATTGATGTTGATTATCTAAGGTTTTTAT
gi|19 : TTACCAAATGGCAGCCCGTTTAT-T--TTTTT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTAtgc
gi|2 : tttctttttttgagTTACCAAATGGCAGCCCTTTTATGT--TT-TT-C-ATTTTCAC-AT-TAAC-ACGT-T--A---T-----------------A---TACATTTA-AAACAGGAGTAATATAA-GT--C---AGTGTAGTAAAAA------T---GATAGAGAGACTGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----TCTGATTAATCATGTA-CACTATAAGGTTA-ATACATACTGATGTTGATTATCTAAGGTTGCTGTTTCTGATTATTCAAATTTTATTAAATGCCATTACCTATTATGAG--TTTCTAATTTGAATCTCGCTTAAGCTAAGATTTattaca
gi|20 : tttttttagA-----T--GATGAATCATGTT-CATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATAATTCAAATTTTATTGAGattctatgtttttacattctcttaaatatcaaagatagttgtcaaagcttggtgtattgcttggtgtatcgttttgc
gi|22 : TTGCCAAATGGCAGCACGTTTAT-T--TT--T-C-ATTTTCAC-AT-TATC-AAGT-
gi|23 : ttttttttttgag--GATTAATCATGTT-CACTATAATATCA-ATACATATTGATGTTGATTATCTAAGG
gi|3 : TTGCCAAATGGCAGCACGTTTAT-T--TT-TTTC-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---TACATTTATAAACATGAGTACTATAA-G---C---AGTGA--------------T---G----------TGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA--------TG-ATGA-----T--GATGAATCATGTT-CATTGTAAGATCA-ATACATATTGATGTTGATTATATAAATTTGC-ATATTTGATTATTCAAATTTTATTGAATGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCT-GCTTGGGCTAAGATTT
gi|4 : ttttttttTTACCAAATGGCAACCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA-----TGA--------TG-ATGA-----T--GATTACTCATGTT-CATTATAAGATTA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|5 : AGCCCGTTTAT-TG-TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GT-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|6 : TTACCAAATAGCAGTCCGTGTGT-T--TT----C-ATTTTCAC-AT-AAAC-AAGT-T--AAATTG---TATA--TAGTTTTA---TACATTTA-AAACAGGATTAATATAA-TT--C---AGTGT--------------A---G----------TGAAACAG-T---GAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTGA-----T----------------------------TAATTACGTA-CACTATTAGATCA-ATACATATTAATGTTGATTATCTAAGGTTACTATTTCTAATTATTTAAATTGTATTGAACGCCATTTCCTATTATACG--TTTCTAGTTTGGAT
gi|8 : tctttttttagTTGCGAAATGGCAGCCGGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAATAATA---CGCATTTATAAATATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAA--------TGTG---------------------TGT---GAGAGAGAGA----------------------G-ATGA-----T--GA---ATCATGTT-CATTATAAGTTCA-ATACATATTAATGTTAATTATATAAGGTTGCTATATTGGATTATTCATATTTTATT
gi|9 : tttgggttttttggggggtttttttagACATGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNTG-ATGA-----T--GATT-------------TATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTAGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
blockSeqs : G CA TTT A . A T A A TC AAT ATTG CT GT TTC A G C GATT TTT AGTAAAAATGATAGAGAGAC GTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGA CT TA T T C T . C
blockSeqs : . G TTT . . G C . . . . ATTG . GT . T A A TT . AG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGATGA . A T . C G . C
blockSeqs : . . TT . . A A . . . . G . AC . T T C TT . AG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATC . A T . A T . C
blockSeqs : . . TT . . . T . . . . . . AC . T T C TT . CG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A A . C G . C
blockSeqs : . . TT . . . T . . . . . . GT . T G A GT . TG GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGATGATGA . A A . A G . .
blockSeqs : . . TT . . . A . . . . . . GT . T G A TT . TG GATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGAGATT . T A . A T .
blockSeqs : . . TT . . . C . . . . . . AC . T A C G . GG GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGATGA . T A . A G
blockSeqs : . . TT . . . T . . . . . . AC . T G C G . AG GTGAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTGAT . T A . C A
blockSeqs : . . TT . . . A . . . . . . AC . . T C G . TG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . T A . A
blockSeqs : . . TT . . . T . . . . . . AC . . T A G . TG TGTGTGTGAGAGAGAGAGATGA . T T . A
blockSeqs : . . TT . . . T . . . . . . GT . . T C G . TG . A A .
blockSeqs : . . T . . . T . . . . . . AT . . G C G . AG . T A .
blockSeqs : . . . . . . T . . . . . . T . . T . G . TG . . . .
blockSeqs : . . . . . . A . . . . . . . . T . G . TG
blockSeqs : . . . . . . T . . .
blockSeqCons : TT** NG*************************** **
originalCons : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGT--------------T---G----------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
finalCons : TTACCAAATGGCAGCCCGTTTAT-T--TTTT--C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGTNG---------------------------TGAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTT-CACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATCTAGACATTTAGACGCTTTCTTATTATTCGTTTATATTTCGATTTCTTTTGACCTTAAATTTGTTCCATATAATAACATTCTTAGATATTGAAGATTGCTGTCAAAGTTAGTTGCACTGTTTTGCATTTTTCTTTTCAAAATAAAATATTTTGCCAAAATATGACATAATCTATTTTTGTTTGATGTAATCGTCACAGAAGCCTAGTGATACATATTTGAATTTACACATTGCATCA
Unaligned ( gi|21 ): ATTATATATGCATGTTACGTGTCAAACAATCTACGTAACAGTTTATATATTGCATACAACATATACT
Alignments
lowQualScore : 1111 1 11111 222222222222222222222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 2 55 5555 2 2 7 1 2 2 33 444 4444 33 33 444 2 1 1 44444 444 1 999999999999999999999999999999999999 666666666666666666666666666666666666666666666666666666666666666666666666666666666 33 2 2 1 2 1 1 77 1
lowQualScore : . .. .... . . . . . . .. ... .... .. .. ... . . . ..... ... . .................................... ................................................................................. .. . . . . . . .. .
lowQualScore : 5 99 2222 5 5 5 0 5 5 77 777 0000 77 33 777 2 9 7 77777 777 0 333333333333333333333333333333333333 888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 0 9 9 9 9 0 99 0
consensus : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGTNG-----------------T------------------GAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTTC-ACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
Reference ( family-295 ) : TTACCAAATGGCAGCCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAGCAATA---TACATTTATAAACANGAGTACTATAA-G---C---AGTGTNG-----------------T------------------GAAAATG-T---GTGTGGGAGAGAGAGAGAAAGAGAAATGNAGANAGAGAGAGATCTGA-----TGA--------TG-ATGA-----T--GATTAATCATGTTC-ACTATAAGATCA-ATACATATTGATGTTGATTATATAAGGTTGCTATATTNGATTATTCAAATTTTATTGAGTGCCATTTCCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|1 : TACAAAATGGCAGCCCGTTTAT-T--AT-T--C-ATTTTCACCAT-TAAC-AAAT-T--A---T----TACA--TAGAAATA---TACATTTAAAAACAGGAGTGATATAA-G---C---AGTGTAGTAAAAAATGATATAGAGT------------------GAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNNNTATCT--GATTAATCATGTTC-ACTACAAGATCT-ATACATATTGATGTTGATTATCCAAGGTTGCTATATTTGATTATTCAAATTTTATTGACTACCATTTCCTATATTGCGTTTTTCTAGTTTGGATATTGCTCGGGCTAAGATTT
gi|10 : cttttgtttctggggTTACCAAGTGGTAGCTCGTTTA-----TT-TT-CAATGTTCAC-ATATATCAAAGTAC--A---T----TGTA--CA-TAATATTCTGCCTTTAAAAA---AAGTACTACGATT---T---AGTGTAG-----------------T------------------GAAAAT------------GAGAGAGAgttctatgtttttaaattctcttaaatatctaagatgtcaaagcaaagcttggtatatcactttgcattttacatttaagaaatgaaatatcttgcaaaaaaaaataacaaaatttatcataatttttgttttgtgttgtcgtcgtggatgtccaatgatatattgttcaaattaaatgctacattaagcccgttttgt
gi|11 : aatgtatatatttccttatatatatgaagagataatacatataatacaaacatgataaatggaaactatttgaagagatttatacataagtacaattgttttagTTACCAAATGGAAGCCTGCTTAT-CCATG-TT-C-ATTATCAC-ATGTACA-AAGT-T--A---CATTGTACA--TAGTAACA---TGTACTTA-AAACAGGAGTGATATGATT---T---ACTGTAG-----------------T------------------CAAAAT--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----T--GATTTATTATGTAC-AATATTGGATCA-ATACATATTGATGTTGATTAa
gi|12 : tttgTTACCAAATATAAGTCCATTTA-----TT-TT-C-GTTTTCAC-AT-AAAC-AAA-----G---T----TACA--TAGTAGTA---TATATTTA-AAACAAGAGT--TATGT-GATTC---AGTGACG-----------------T------------------GAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NNTAT-C-----T--GATTAATTATGTAC-ACTAC--GTTCATGTATATACTG-TGTT
gi|13 : ctttttttagTTACCAAATGGCAGCCTGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGTTG-----------------T------------------GAAAATG-T---G
gi|14 : ttttttttttgagTTACCAAATGGCAGCCCGTTTTT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGTTG-----------------T------------------GAAAATG-
gi|15 : tgtttttttgagCAGGAGAAATATAA-TT--C---AGTGTGG-----------------T------------------GTTAATGATAGAGAGTGAAAATGAGAGAGAAAGAGAAATAAAGAAAGAGAGAGA---GA-----T----------T-----------T--AATTACTTATGTAC-ACTTTTAGATCA-ATAC
gi|16 : TTATCAAATTGTATCCCGTTT--------------ATTTTCAC-AT-AAAC-AAGT-TTCA---T----TATACTTAGTAATA---TACATTT-TAAACAGGCGTA
gi|17 : cctttcttttttttccTTACCAAGTGGT-----GATTAT-T--TT----C-ATTTCCAC-ACATACA-AAGT-T--A---CATTGTACA--CAGTATTA---TGCATTTA-AAACAAGAGT--TACAT-G---CTTTAGTGGAG-----------------T------------------GAAAaaaaactactttatagtga
gi|18 : atttttttaagGGAGAGAGAGGGGAAAAAGAATG---------AGAGATCTGA-----T----------TA-ATTA-----T----CTAAAC-TATTAGACTATTAGAATA-ATACATATTGATGTTGATTATCTAAGGTTTTTAT
gi|19 : TTACCAAATGGCAGCCCGTTTAT-T--TTTTT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTAtgc
gi|2 : tttctttttttgagTTACCAAATGGCAGCCCTTTTATGT--TT-TT-C-ATTTTCAC-AT-TAAC-ACGT-T--A---T-----------------A---TACATTTA-AAACAGGAGTAATATAA-GT--C---AGTGTAG-----------------TAAAAATGATAGAGAGACTGAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN--------NN-NNNN-----TCTGATTAATCATGTAC-ACTATAAGGTTA-ATACATACTGATGTTGATTATCTAAGGTTGCTGTTTCTGATTATTCAAATTTTATTAAATGCCATTACCTATTATGAG--TTTCTAATTTGAATCTCGCTTAAGCTAAGATTTattaca
gi|20 : tttttttagA-----T--GATGAATCATGTTC-ATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATAATTCAAATTTTATTGAGattctatgtttttacattctcttaaatatcaaagatagttgtcaaagcttggtgtattgcttggtgtatcgttttgc
gi|22 : TTGCCAAATGGCAGCACGTTTAT-T--TT--T-C-ATTTTCAC-AT-TATC-AAGT-
gi|23 : ttttttttttgag--GATTAATCATGTTC-ACTATAATATCA-ATACATATTGATGTTGATTATCTAAGG
gi|3 : TTGCCAAATGGCAGCACGTTTAT-T--TT-TTTC-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---TACATTTATAAACATGAGTACTATAA-G---C---AGTGATG-----------------T------------------GAAAATN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA--------TG-ATGA-----T--GATGAATCATGTTC-ATTGTAAGATCA-ATACATATTGATGTTGATTATATAAATTTGC-ATATTTGATTATTCAAATTTTATTGAATGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCT-GCTTGGGCTAAGATTT
gi|4 : ttttttttTTACCAAATGGCAACCCGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGTTG-----------------T------------------GAAAATG-T---GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA-----TGA--------TG-ATGA-----T--GATTACTCATGTTC-ATTATAAGATTA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|5 : AGCCCGTTTAT-TG-TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAACAATA---CACATTTATAAACATGAGTACTATAA-G---C---AGTGTTG-----------------T------------------GAAAATG-T---GT-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TGA--------TG-ATGA-----T--GATTAATCATGTTC-ATTATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTGGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
gi|6 : TTACCAAATAGCAGTCCGTGTGT-T--TT----C-ATTTTCAC-AT-AAAC-AAGT-T--AAATTG---TATA--TAGTTTTA---TACATTTA-AAACAGGATTAATATAA-TT--C---AGTGTAG-----------------T------------------GAAACAG-T---GAAAAGGAGAGAGAGAGAAAGAGAAATGGAGATAGAGAGAGATCTGA-----T----------------------------TAATTACGTAC-ACTATTAGATCA-ATACATATTAATGTTGATTATCTAAGGTTACTATTTCTAATTATTTAAATTGTATTGAACGCCATTTCCTATTATACG--TTTCTAGTTTGGAT
gi|8 : tctttttttagTTGCGAAATGGCAGCCGGTTTAT-T--TT-TT-C-ATTTTCAC-AT-TATC-AAGT-T--A---T----TATA--TAATAATA---CGCATTTATAAATATGAGTACTATAA-G---C---AGTGTTG-----------------T------------------GAAAA--------TGTG---------------------TGT---GAGAGAGAGA---GA-----TGA--------TG-----------------AATCATGTTC-ATTATAAGTTCA-ATACATATTAATGTTAATTATATAAGGTTGCTATATTGGATTATTCATATTTTATT
gi|9 : tttgggttttttggggggtttttttagACATGAGTACTATAA-G---C---AGTGTTG-----------------T------------------GAAAATG-T---GTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNTG-ATGA-----T--GATT-------------TATAAGATCA-ATACATATTGATGTTAATTATATAAGGTTGCTATATTAGATTATTCAAATTTTATTGAGTGCCATTTTCTATTATGCG--TTTCCAGTTTGGATCTCGCTTGGGCTAAGATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATCTAGACATTTAGACGCTTTCTTATTATTCGTTTATATTTCGATTTCTTTTGACCTTAAATTTGTTCCATATAATAACATTCTTAGATATTGAAGATTGCTGTCAAAGTTAGTTGCACTGTTTTGCATTTTTCTTTTCAAAATAAAATATTTTGCCAAAATATGACATAATCTATTTTTGTTTGATGTAATCGTCACAGAAGCCTAGTGATACATATTTGAATTTACACATTGCATCA
Unaligned ( gi|21 ): ATTATATATGCATGTTACGTGTCAAACAATCTACGTAACAGTTTATATATTGCATACAACATATACT