lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1111111 111111 2222 44444444444444444444444 44444444444444444444444444444444444444444444444444 3333333333333333 1 4444444444444 11111 222
lowQualScore : 0 0 2 0000000 99999999 444 5555 2 0000000 2 5555 4444 7777 333 77 000000 4444 22 8888 77777 55555 4444 2222 6 00000000000000000000000 8888 00000000000000000000000000000000000000000000000000 666666 1 5555 33 7777 666 333 2 5 3333333333333333 33 1 555 3 3333333333333 99999 444
lowQualScore : . . . ....... ........ ... .... . ....... . .... .... .... ... .. ...... .... .. .... ..... ..... .... .... . ....................... .... .................................................. ...... . .... .. .... ... ... . . ................ .. . ... . ............. ..... ...
lowQualScore : 4 3 4 4444444 11111111 444 0000 1 5555555 0 6666 2222 8888 555 11 888888 7777 99 3333 44444 33333 2222 9999 1 88888888888888888888888 8888 77777777777777777777777777777777777777777777777777 888888 1 0000 22 4444 555 555 7 3 4444444444444444 99 8 888 8 6666666666666 11111 999
consensus : GGCATGCCAAACGTTGCAATATTCAATA------NTT--------TT---AT----A-T-------TTGTATTCA-ATN---T----TCA----T---AC--ATTTC---TAT----TGTATA--TTGTT---NCA-----T-----TTGTA----TTCTATATTTGCTCATTTGTATTTAN-T--NA-T-C-TTT--------AT----TTATATT--G--TA----C-----ATGTA---------TATAT--------------TG------TTTCATTTGTA----TTCT--ATA----TT---T-C-T-CA-TTT-GTAT-TT--A-----A--TAACTGTCG---ATTTGTATT----ATA--TTGTATA-ATNTTTATTTATATTCTAT
Reference ( gi|9 ) : GACATGCCAAACATTGCAATATTCAATA------GTT--------TT---AT----A-T-------TTGTATTCA-ATA---T----TCA----T---AC--ATTTC---TGT----TGTATA--TTGTT---ACA-----T-----TTGTA----TTCTATACCTGCTCACTTGTATTTAT-T--TA-T-C-TTT--------AT----TTATATT--G--TA----C-----ATGTA---GAAGTCTATAT--------------TG------TTTCATTTGTA----TTCT--ATA----TT---T-C-T-CA-TTT-G-AT-TTA-A-----A--TAACTGTTG---ATATGTATT---CATA--TTGTATA-ATAGTTAATAATATTCTAT
gi|17 : GGCATGCCAAACATTGCAATATTCAGTC------TTT--------TT---AT----A-T-------TTGTATTCA-GTC---T----TTG----T---AC--ATTTC---TAT----TGTATA--TTGTT---ACA-----T-----TTGTA----TTCTA
gi|10 : gtatatattactgattttgtagtaaatctgttacttgagaactgcattatgcaaagtattcaataaataaatgttcatgtaatactatGGCAGACTAAACGTTACAATATTCAA--------ATT--------TT---ATCAAAG-T-------TTG-A--CA-ATA---T----CCA----T---AC--ATTTC---TAT----TTTATA--GTGTT---ACA-----T-----TTGTA----TTCCATATTT-TTCATTTGTAATGAC-------T-C-TTG--------ATTA--TTGTATA--G--CA----C-----AT--------------TAT--------------TA------CTTCATTTGTA----TTTT--ATA----TT---T-C-T-AA-TTTGG-AT-TT--------A--TAACTGGCG---ATTTGTATTGTATATA--TTATATATATA
gi|7 : atGACATGTCAATCGCTGCAATACTCAATA------TTT--------TT----T----A-T-------TTGTATTCA-ATC---T----CCA----T---AC--ATTTC---TAT----TGTATA--TTGTT---ACA-----T-----ATGTA----TTCTATATTTGCTAATTTGTATTTGT-G--T--T-T-TCT--------AT----TCATATT--A--TA----T-----ACTT--------TTTAT-T--------------TA------TTT--TCTGCA----TT-T--ATA----TTGTAT-C-T-C-----------TTAGA-----A--TAGTT-TTGCAAATTTACATT---TAAA--TCGTA-A-ACA---AATAATcactctgtattcatagatatttaa
gi|8 : aatttacaagctttcagaggtgttttatGGCATGCCAAACGTTGCAATATTCGATA------TTT--------TT---AC----A-T-------TTGCATTCA-ATC---T----TCA----T---AA--TTTTT---TAT----TGTATA--TTGTT---TCA-----T-----TTGTA----TTTTATATTT-CTCATGTGTATTTAA-T--AA-T-TGTTG--------AT----TTGTATT--GCTTA----CTTTTTATTTA----AATTCTATATATTTAAATTGTATCTG------TTACATTAGTA----TTGT--AAA----TTA--T-CTT-CA-TTT-G-----TA-G-----AGTTAAGTGCCA---ATATttgtaatcgatactgctatatttatatttcat
gi|1 : taaattaatattgaacaacatGACATGCTG----TTGCAATATTCAATA------------------------------T-------TTGTATTCA-GTC---T----TCA----T---AC--ATTAC---TAT----TGTATA--TTATTGTAACATTAATT-----TTGTA----TTCTATATTT-CTCATTTGTAGTTAA-T--AATT-C-TTG--------AT----TCGTTTT--G----------------------------TATAT--------------TG------ATTTATTTGAA----TTCT--AGAAATTTT---T-C-T-CA-TTT-GTAT-TT--A-----A--TAACTGTTG---ATTTGTATT---
gi|13 : atGGCATACCAAACGTTGCAATATTCAATA------TTT--------TTGTAAT----A-T-------TTGTATTCT-ATA---TTTGCTCATTTGT---ACTTATTTTTTATAT----TGTATATTTTTTT---TCA-----A-----TTCTG----TTCTATATTT-CTCATTTATATTTG------A-T-A-ACT--------AT----TGAT-TT--G--TA----------ATGTA---------TA-AT----------------------TTTTATTTATA----TTCT--ATA----TT---T-A-TATA-TTT---ATATTA-T-----A--TATCTgtctagatttttatttatatatgtatttaaattttatctgacacttacattttcattgtagattcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|3 : GACATGTCAAATATTACAATATTCAATG--------T--------CT---AT----AAT-------TTGTGTTCA-GTC---T----TCA----T---A-----------------------------------CA-----T-----TCCTA----TTCTATATTAGCTCATTTGTATTTAA-T--AA-TTC-TCG--------AT----TTATATC--G--TA------------------------TATA----------------G------TTTCATTTCTA----TTCTTCAT-----TT---T-C-T-CA-TTT-GTAT-TTA-ATACATG--TAACTGCTG---AAGTGTA------A-----TGAATA-ATTGTTATTTCTATTCTATtacattagt
gi|20 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaataGGCATGCCAAGCGTTGCAATATTCAATA------CTT--------TT---AT----A-TTTGCCAATTGTGTTCGCATA---G----TCA----TTTGAC--ATTTC---GGTTCAGTGTATA--GCGTT---AAC-----T-----TTATA----gttgtattatttatgctcaaaattaggtcattaaattgttgttgtattgttattgtttgtttacatttatatttaattttaatattgtaaattgcctcatt
gi|21 : tattagtcaatacataatcaagactatcatctccattagaaggaaatgtatCATGTCAAACGTTGCAATATTTGGTA------GTT--------TT----T----G-C-------TC--ATTTA-TCA---T----GCA----T---AT--ATTTC---CAT----GGTATA--TTGTA---ATA-----T-----TTCTA----TCCGATATGTGCTCATTT
gi|18 : taagtATGCCAACCATTGCAATATTCATTA------TGT--------TT---AT----A-T-------TTGTATTCA-AAC---T----TCA----T---AT--AATTG---TAT----TGTATA--TTGTT---TCA-----T-----TTGTA----TTCTATATTTA-TCATTTagtcatgtttt
gi|14 : ataaatagcagttggaaaatcatgcttgttatgaacaaactcattgtgcagatgtaaaactatgggATGCCAATCGTTGCAATATTTTATATTCTTAATTAAATAAAATT---AT----A-T-------TAGCATTCG-ATA---G----TCA----T---AT--ATTTT---TTT----TGTATA--TTGTT---ACAT----T-----TTGTA----TTATATA-GTGCTCACTTGTGTTTATGT--TA-T-T-TTTCAGTTTTGAT----TTATATT--C--CA----TCTTA-ATATA-------TTTATAT--------------TT------CATCACTTACA----TTA---ATA----TT---
gi|23 : tatggaATACCAAACGTTGCAATATTCAATAT-----GTT--------TT---GT----G----------TGTAGTCA-AGC---T----CCA----T---atacatct
gi|22 : ttgaTGCCAAG-A--GCAATATTCAATG------TTT--------CT---AT----A-T-------GTGTATTTA-GTC---G----TCA----T---AC--ACTTC---T
gi|24 : CCGAACGTTGCAGTATTCAATA------CTT--------TT---AT----A-T-------TTGTATCCA-A-A---T----Ta
gi|11 : ATA------GTT--------CA---AT----A-T-------TTGTATTCA-ATA---T----TCA----T---AC--AATTC---TAT----T-TATA--GTGTT---ACA-----T-----TTGTA----TTCTATATCTGCTAATGTGTATTTAA-T--AT-T-T-TTT--------AT----TTAAATT--G--TA----TA----ATAT------------TAT--------------TG------TTTCATTTGTA----TTCT--ATA----TT---T-G-T-CA-TTT-GCAT-TT--A-----A--TCGCTGTTG---GTTTGTATT---ac
gi|2 : t------GTT--------TC---AT----A-TGAC----TTGTATTCT-ACA---T----TTC----T----C--ATTTG---TAT----TTAATA--GTGTT---TTA-----T-----TTATA----TTGTATACGGTTTCATTTGTA---AT-C--TA-T-A-TAT--------AT----TTGTATTTGA--TA----A-----ATGTT---GA--TTTGTAT--------------TGTATGATTTTTATTTATA----TTTT--ATA----TT---T-gtttatttttttataatgtgttgaattttgaaaatctctagatc
gi|19 : gtataag----A-T-------TTGTTTTTA-ATAACTC----TCAATC-T---AT--ATTCA---T-T----TGTACA--TTGTT---TCG-----T-----TTCTA----TTCTATATTTTCTCATTTGTATatattatatttcttaccatagtattgtaaattcacttcatttagatcgtatatatcatttgtattgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|5 : atgttagagatgcaatacatctctataaatattgctttgtttattgcttttctacatttgctc-T-------TTGTATTTA-ATG---T----T-G----T---ATT-ATTTA---TAT----CGTATA--TTGCT---TCA-----T-----TTATA----TTCTTTAATT-CTCCGTTATATTTAT-T--AA-T-T-TTTG-------AT----TTATA-------------------ATGTA-----------TAT--------------TG------TTTCATTTCTT----TTCT--ATA----TT---T-C-T-CACTTT-T-AT-TT--A-----A--TAAC--TTG---ATTTG---------TA--TTGTATA-CTATTTATCTATATTTTATcaaaatcatgtaat
gi|4 : cg-T-------TTGTATTTA-ATG---T----T-G----T---ATT-ATTTA---TAT----CGTATA--TTGCT---TCA-----T-----TTATA----TTCTTTAATT-CTCCGTTATATTTAT-T--AA-T-T-TTTG-------AT----TTATA-------------------ATGTA-----------TAT--------------TG------TTTCATTTCTT----TTCT--ATA----TT---T-C-T-CACTTT-T-AT-TT--A-----A--TAAC--TTG---ATTTG---------TA--TTGTATA-CTATTTATCTATATTTTATatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|13 : tcgCA-ATA---T----TCA--------AT--ATTT------T----TGTA------------ATA-----T-----TTGTA----TTCTATATTTGCTCATTTGTACTTAT-T--T------------------T----TTATATT--G--TA------------------------TATTT--------------TT------TTTCAATTCTG----TTCT--ATA----TT---T-C-T-CA-TTT-ATAT-TT--G-----A--TAACTATTG---ATTTGTA------A-----TGTATA-ATTTTTATTTATATTCTATatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|19 : ggcataccaaacgttgA----T---AC--ATCTC---TAT----AA-ATA--TTGCT---TTG-----T-----TTATTGCTTTTCTACATTTGCTCATTTGTTTTTAA-T--AACT-C-TCA--------AT----CTATATT-----------C-----ATTTG---------TACAT--------------TG------TTTCGTTTCTA----TTCT--ATAT---TT---T-C-T-CA-TTT-GTAT-CAA-A-----A--Tatttatatatttatattatatatcttacattagt
gi|2 : atgttagagatgcaGTATA--AGGTT---TCA-----TATGACTTGTA----TTCTACATTT-CTCATTTGTATTTAA-TAGTG-T---TTT--------AT----TTATATT--G--TA----T-----ACG-------------------------------G------TTTCATTTGTA----ATCT--ATA----TA---T------A-TTT-GTAT-TT--G-----A--TAAATGTTG---ATTTG---------TA--TTGTATG-ATTTTTATTTATATTTTATcatgtaat
gi|8 : TA----TTCGATATTTTTACATTTGCATTCA------A-T-C-TTC--------ATAATTTTTTATT--G--TA--------------------------TAT--------------TG------TTTCATTTGTA----TTTT--ATA----TT---T-C-T-CA-TGT-GTAT-TT--A-----A--TAATTGTTG---ATTTGTATTG--CTTACTTTTTAT------TTAA----ATTCTATatttatattatatttcttaccatagtattgtaaattcacttcatttagatcgtatatatcatttgtattgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|18 : taaattaatattgaacaacatggcatgccaaacgttgcaaTATTCAT-TA-TG-T-T-TAT--------AT----TTGTATT--C--AAACTTC-----ATATAATTGTATTGTATAT--------------TG------TTTCATTTGTA----TTCT--ATA----TT---T-A-T-CA-TTT-atatttaaattgtatctgttacattagtattgtaaattatcttcatttgtagagttaagtgccaatat
gi|19 : ataaatagcagttggaaaatcatgcttgttatgaacaaactcattgtgcagatgtaaaactatgggatgccaaccattgcaaATAT--------------TG------CTTTGTTTATTGCTTTTCT--ACA----TT---TGC-T-CA-TTT-G-TT-TTT-A-----A--TAACTCTCA---ATCTATATT---CAT---TTGTACA-
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTTACATTTCCATTCAACATTTTAACATTTATATCTAATAATTGTCGATTTGTATTGTAGAATATTTCATTTCTATTCATTTGTGCTAACATGTTTTTTCATTCTTTTCTGTATACATTTATTTACATTCCATATTTAGCAATTGTATTATAATTTCATTTCATTAAGACTGGAAACATGTTATTTGTATTAAATACTACTCACATATATATCAACTTACGAGTACATGTCTATAATTCTAAGTCGGATATATTTGTATTGTATATGTCATTTTCATTTGTATTCATTTGTATAAATGTACTGTTTACGTTGTAACAAAGGATTTCATTAGTCCAATTTT
Unaligned ( gi|12 ): AATTATATATCAACCTACATTTTGATTACAAGTTATCCATACTTTTATAATAAAAAAATATGTAATTTCCATTTGTATGGCATAATTGCATTCTTGGTAATGTTTGTTTACTTTGTTACGAAGGGTTTCATTCGTCCAATTTATGAGACTGCACTTCCTTAATAGCTGCGTATGCTAAGTAAGTAACCACATCTTGCATAATCGACACTATC
Unaligned ( gi|15 ): ATTTATAGAGATGTATTGCATCTCTAACATTAATATTGTAATTTCCTTCACACAGGTCTTAAAAGTAGGTTGTATTCCATATTACTCATTACATATTACATTGAATTCCAACCTAAATTTCTATTTTAAGACCGCTGTATTAGTATTTTATACAATTTTCATTTTTATTGTATACATGTACATGTAATTGCATTCTGGGT
Unaligned ( gi|16 ): GTTCGTATTGTATATTTTGTATGATATTCTATATTTATATATTTATATTGTATCTCTTACATTAGTATTGTAAAATCTCTTCATTTAGGTCGTAAAACAAACATTTGTATTCATTACTGCAGTATTTGCACATCATTTCTATTTTTATTGTATAATTGCATTTTGGGGATGCTTGTTTACTTTGT
Alignments
lowQualScore : 22222222222222222222222 22222222 11111 6666666666666666666666666666666666666666666666666666 1111111111 4444444444 111111
lowQualScore : 5 44444444444444444444444 6666666 1 4444444 4 4444 4444444 7777 22 1 77777777 55555 2 4444 9999999999 11111111 2 5 66 33 11111 33 7 2 0 2222222222222222222222222222222222222222222222222222 4 666 2 7777 2 88 55 7777777 7777777 33 4444 444 33 9999999999 6666 0000000000 555 33 44 1 2 3 111111 1
lowQualScore : . ....................... ....... . ....... . .... ....... .... .. . ........ ..... . .... .......... ........ . . .. .. ..... .. . . . .................................................... . ... . .... . .. .. ....... ....... .. .... ... .. .......... .... .......... ... .. .. . . . ...... .
lowQualScore : 1 88888888888888888888888 2222222 9 3333333 0 0000 2222222 8888 88 0 22222222 00000 0 2222 2222222222 77777777 2 0 88 55 22222 44 5 0 1 6666666666666666666666666666666666666666666666666666 7 222 4 4444 4 00 66 6666666 6666666 22 9999 777 99 0000000000 1111 5555555555 000 99 44 0 9 1 999999 1
consensus : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTCA-ATN-T----T-CA----T---AC--ATTTC----TATTGTATA--TTGTTNCA--------T-----TT-GTA----TTCTA----------TATTTG-------CTC-ATTTGTATT-TAA-TA-A-T-T-T--TT-ATTTATATTGTA-A---TGTA------TA------------------TATTGT--------TT-CATTT--NTAT-TCTATA----TT-TC-T--CA-------TT-------TGTA--TTT-A-AT---AACT--GT-------TG-ATT----TGT-ATT--G--TA---TTGT--ATA-ATAT-T-T------ATTTATATTCTAT
Reference ( family-2945 ) : GGCATGCCAAACGTTGCAATATTCAATANTTTT---A--------------T----AT-------TTGTATTCA-ATN-T----T-CA----T---AC--ATTTC----TATTGTATA--TTGTTNCA--------T-----TT-GTA----TTCTA----------TATTTG-------CTC-ATTTGTATT-TAN-TN-A-T-C-T--TT-ATTTATATTGTACA---TGTA------TA------------------TATTGT--------TT-CATTT--GTAT-TCTATA----TT-TC-T--CA-------TT-------TGTA--TTT-A-AT---AACT--GT-------CG-ATT----TGT-ATT--A--TA---TTGT--ATA-ATNT-T-T------ATTTATATTCTAT
gi|1 : GACATGCT----GTTGCAATATTCAATA-----------------------------T-------TTGTATTCA-GTC-T----T-CA----T---AC--ATTAC----TATTGTATA--TTATTGTAACATTAATT-----TT-GTA----TTCTA----------TATTT--------CTC-ATTTGTAGT-TAA-TA-A-TTC-T--TG-ATTCGTTTTGTA-----------------------------------TATTGA--------TT-TATTT--GAAT-TCTAGAAATTTT-TC-T--CA-------TT-------TGTA--TTT-A-AT---AACT--GT-------TG-ATT----TG----------TA---TTGT--CTAGATTT-T-T------ATTTATAT
gi|10 : atGGCAGACTAAACGTTACAATATTCAA--ATTTT---A--------------TCAAAGT-------TTG-A--CA-ATA-T----C-CA----T---AC--ATTTC----TATTTTATA--GTGTTACA--------T-----TT-GTA----TTCCA----------TATTT--------TTC-ATTTG-----TAA-TG-ACT-C-T--TG-AT---TATTGTATA----GCA------CAT-----------------TATTAC--------TT-CATTT--GTAT-TTTATA----TT-TC-T--AA-------TT-------TGGA--TTT---AT---AACT--GG-------CG-ATT----TGT-ATT--G--TA------T--ATA-TTAT-A-T------ATATACACTCTGTatgtatttaaattttatctgacacttacattttcattgtagattcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|11 : atATAGTTCA---A--------------T----AT-------TTGTATTCA-ATA-T----T-CA----T---AC--AATTC----TATT-TATA--GTGTTACA--------T-----TT-GTA----TTCTA----------TATCTG-------CTA-ATGTGTATT-TAA-TA-T-T-T-T--TT-ATTTAAATTGTATA----ATA------T-------------------TATTGT--------TT-CATTT--GTAT-TCTATA----TT-TG-T--CA-------TT-------TGCA--TTT-A-AT---CGCT--GT-------TG-GTT----TGT-ATT--GTTTATTTTTTT--ATA-ATGT-attcatagatatttaa
gi|13 : tGGCATACCAAACGTTGCAATATTCAATATTTTTGTAA--------------T----AT-------TTGTATTCT-ATA-TTTGCT-CATTTGT---ACTTATTTTTTA-TATTGTATATTTTTTTTCA--------A-----TT-CTG----TTCTA----------TATTT--------CTC-ATTTATATT-TGA-TA-A--------CT-ATTGAT-TTGTA-A---TGTA------TA-------------------AT--T--------TT-TATTT--ATAT-TCTATA----TT-TA-TA-TA-------TT-------TATA--TTgttgaattttgaaaatctctagatc
gi|14 : GGAATGCCAATCGTTGCAATATTTTATATTCTT---AATTAAATAAAATTAT----AT-------TAGCATTCG-ATA-G----T-CA----T---AT--ATTTT----TTTTGTATA--TTGTTACA--------T-----TTTGTA----TTATA----------TAGT-G-------CTC-ACTTGTGTT-TATGTT-A-T-T-T--TTCAGTT---TTG---A---TTTA------TA------------------T-------------TC-CATCTTAATATATTTATA----TT-TCAT--CA-------CT-------TACA---TT-A-AT---Aatatatcttacattagt
gi|17 : tatGGCATGCCAAACATTGCAATATTCAGTCTTTTT---A--------------T----AT-------TTGTATTCA-GTC-T----T-TG----T---AC--ATTTC----TATTGTATA--TTGTTACA--------T-----TT-GTA----TTCTA----------ttatacatct
gi|18 : gtatatattactgattttgtagtaaatctgttacttgagaactgcattatgcaaagtattcaataaataaatgttcatgtaatactatGGGATGCCAACCATTGCAATATTCATTATGTTT---A--------------T----AT-------TTGTATTCA-AAC-T----T-CA----T---AT--AATTG----TATTGTATA--TTGTTTCA--------T-----TT-GTA----TTCTA----------TATTTA--------TC-ATTT
gi|19 : ataaatagcagttggaaaatcatgcttgttatgaacaaactcattgtgcagatgtaaaactatA----T---AC--ATCTC----TATAA-ATA--TTGCTTTG--------T-----TT-ATTGCTTTTCTA----------CATTTG-------CTC-ATTTGTTTT-TAA-TA-ACT-C-T--CA-ATCTATATT---CA---TTTG------TA------------------CATTGT--------TT-CGTTT--CTAT-TCTATAT---TT-TC-T--CA-------TT-------TGTA--T
gi|2 : atgttagagatgcaGTATA--AGGTTTCA--------TATGACTT-GTA----TTCTA----------CATTT--------CTC-ATTTGTATT-TAA-TA-G-TGT-T--TT-ATTTATATTGTATA---CG--------------------------------GT--------TT-CATTT--GTAA-TCTATA----TA-T------A-------TT-------TGTA--TTT-G-AT---AAAT--GT-------TG-ATT----TG----------TA---TTGT--ATG-ATTT-T-T------ATTTATATTTTATcaaaatcatgtaat
gi|2 : TATTCTACATTTCT------------------C----AT-------TTGTATTTA-ATA-G----T-GT----T---TT--ATTTA----TATTGTATA--CGGTTTCA--------T-----TT-GTA----ATCTATATATATTTGTATTTGATAAATGTTG-ATTTGTATTGTA--TG-A-T-T-T--TT-ATTTATATTTTATA---TTTA------TATTATATTTCTTACCATAGTATTGTAAATTCACTT-CATTT--AGAT-CGTATA-------TA-T--CA-------TT-------TGTA--TTG-G-GT----ACT--GC-------TATATT----TGT-ATT--G--TA----TAC--GTA-ATTT-C-T------ATTTATATTGTATatttatattatatttcttaccatagtattgtaaattcacttcatttagatcgtatatatcatttgtattgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|20 : gtataaggtttcatatgacttgGGCATGCCAAGCGTTGCAATATTCAATACTTTT---A--------------T----ATTTGCCAATTGTGTTCGCATA-G----T-CA----TTTGAC--ATTTCGGTTCAGTGTATA--GCGTTAAC--------T-----TT-ATA----agttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|21 : tattagtcaatacataatcaagactatcatctccattagaaggaaatgtatCATGTCAAACGTTGCAATATTTGGTAGTTTT------------------T----GC-------TC--ATTTA-TCA-T----G-CA----T---AT--ATTTC----CATGGTATA--TTGTAATA--------T-----TT-CTA----TCCGA----------TATGTG-------CTC-ATTT
gi|22 : taagtTGCCAAGAG---CAATATTCAATGTTTCT---A--------------T----AT-------GTGTATTTA-GTC-G----T-CA----T---AC--ACTTC----TAagtcatgtttt
gi|23 : ATACCAAACGTTGCAATATTCAATATGTTT------------------T----GT-------GTGTAGTCA-AGC-T----C-CA----T---
gi|24 : ttgaCCGAACGTTGCAGTATTCAATACTTTT---A--------------T----AT-------TTGTATCCA-A
gi|3 : GACATGTCAAATATTACAATATTCAATGTCTAT---A-------------------AT-------TTGTGTTCA-GTC-T----T-CA----T---AC--ATTCC----TATTCTATA--TTAGCTCA--------T-----TT-GTA----TTTAA----------TAATT--------CTCGATTTATATCGTAT-AT-A-G-T-T--TC-ATTTCTATTCTTCA---T-------------------------------TT-T--------CT-CATTT--GTAT-TTAATA----CA-TG-T--AA-------CTGCTGAAGTGTA--ATG-A-AT---AATT--GT-------T--ATT----TCT-ATTCTA--TG---TTGT--AT---TAT-T-T------ATattac
gi|3 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaataTATTCTATA---TT---AGCT-----------C----AT-------TTGTATTTA-ATAAT----T-C-----T---CG--ATTTA----TATCGTATA--TAGTTTCA--------T-----TT-CTA----TTCTT----------CATTTT-------CTC-ATTTGTATT-TAA-TACA-T-G-TAACT-GCTGA-AGTGTA-A---TGAA------TA-------------------ATTGT--------T---ATTT--CTAT-TCTATG----TTGTA-T--TA-------TT-------TATG--CTC-A-A----AATTAGGT-------C--ATTAAATTGTTGTT--G--TA---TTGT---TA-TTGT-T-TGTTTACATTTATATTgctcaaaattaggtcattaaattgttgttgtattgttattgtttgtttacatttatatttaattttaatattgtaaattgcctcatt
gi|4 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaatagacatgtcaaatattacaatattcaatgtctataatttgtgttcagtcttcatacattccT-------TTGTATTTA-ATG-T----TGTA----T----T--ATTTA----TATCGTATA--TTGCTTCA--------T-----TT-ATA----TTCTT----------TAATT--------CTC-CGTTATATT-TAT-TA-A-T-T-T--TTGATTTATA------A---TGTA------TA--------------------TTGT--------TT-CATTT--CTTT-TCTATA----TT-TC-T--CA-------CT-------TTTA--TTT-A-AT---AAC----T-------TG-ATT----TG----------TA---TTGT--ATA-CTAT-T-T------ATCTATATTTTATtaattttaatattgtaaattgcctcatt
gi|5 : tcgT-------TTGTATTTA-ATG-T----TGTA----T----T--ATTTA----TATCGTATA--TTGCTTCA--------T-----TT-ATA----TTCTT----------TAATT--------CTC-CGTTATATT-TAT-TA-A-T-T-T--TTGATTTATA------A---TGTA------TA--------------------TTGT--------TT-CATTT--CTTT-TCTATA----TT-TC-T--CA-------CT-------TTTA--TTT-A-AT---AAC----T-------TG-ATT----TG----------TA---TTGT--ATA-CTAT-T-T------ATCTATATTTTATatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : cgT--------TTACATTT--CCAT-TCAACA----TT-T--TAACA-------TT-------TATA--TCT-A-AT---AATT--GT-------CG-ATT----TG----------TA---TTGT--AGA-ATAT-T-TC-----ATTTCTATTCatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : ATTCAACATTTTA---A--------------C----AT-------TTATATCTA-ATA-A----T-TG----T---CG--ATTTG----TATTGTAGA--ATATTTCA--------T-----TT-CTA----TTC-A----------TTTGTG-------CTA-ACATGTTTT-T---TC-A-T-T-C--TT--TTC-------------TGTA------TA------------------CA------------TT-TATTT--ACAT-TCCATA----TT-TA-G--CA-------AT-------TGTA--TT----AT---AATT---T-------C--ATT----T-C-ATTA-A--GA---CTGG--A-A-ACATGT-T------ATTTGTATTatttgtgctaacatgttttttcattcttttctgtatacatttatttacattccatatttagcaattgtattataatttcatttcattaagactggaaacatgttatttgtattaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|7 : tttacatttccGACATGTCAATCGCTGCAATACTCAATATTTTT------------------T----AT-------TTGTATTCA-ATC-T----C-CA----T---AC--ATTTC----TATTGTATA--TTGTTACA--------T-----AT-GTA----TTCTA----------TATTTG-------CTA-ATTTGTATT-T-G-TG-T-T-T-T--CT-ATTCATATTATATACTTTTTA------TT------------------TATTTT--------CTGCATTT--ATAT-T--GTA----TC-TC-T--TAGAATAGTTT-------TGCAAATTT-ACATTTAAATC--GTAAACAAATA-ATT----TGT-A--------A---TCG---ATA-CTGC-TAT------ATTTATATTTCATaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|8 : aatttacaagctttcagaggtgttttatGGCATGCCAAACGTTGCAATATTCGATATTTTT---A--------------C----AT-------TTGCATTCA-ATC-T----T-CA----T---AA--TTTTT----TATTGTATA--TTGTTTCA--------T-----TT-GTA----TTTTA----------TATTT--------CTC-ATGTGTATT-TAA-TA-A-T-TGT--TG-ATTTGTATTGC------T-----------------------------TACT-T--------TT-TATTT--AAAT-TCTATA----TA-TT-T--AA-------AT-------TGTA--T------------CT--G-------------T----TAC-ATT--AG-TA---TTGTAAATT-ATCT-T-C------ATTTGTA
gi|9 : taaattaatattgaacaacatGACATGCCAAACATTGCAATATTCAATAGTTTT---A--------------T----AT-------TTGTATTCA-ATA-T----T-CA----T---AC--ATTTC----TGTTGTATA--TTGTTACA--------T-----TT-GTA----TTCTA----------TACCTG-------CTC-ACTTGTATT-TAT-TT-A-T-C-T--TT-ATTTATATTGTACA---TGTAGAAGTCTA------------------TATTGT--------TT-CATTT--GTAT-TCTATA----TT-TC-T--CA-------TT-------TG-A--TTTAA-AT---AACT--GT-------TG-ATA----TGT-ATTC-A--TA---TTGT--ATA-ATAG-T-T------AATAATATTCTATgagttaagtgccaatat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATTATATATCAACCTACATTTTGATTACAAGTTATCCATACTTTTATAATAAAAAAATATGTAATTTCCATTTGTATGGCATAATTGCATTCTTGGTAATGTTTGTTTACTTTGTTACGAAGGGTTTCATTCGTCCAATTTATGAGACTGCACTTCCTTAATAGCTGCGTATGCTAAGTAAGTAACCACATCTTGCATAATCGACACTATC
Unaligned ( gi|15 ): ATTTATAGAGATGTATTGCATCTCTAACATTAATATTGTAATTTCCTTCACACAGGTCTTAAAAGTAGGTTGTATTCCATATTACTCATTACATATTACATTGAATTCCAACCTAAATTTCTATTTTAAGACCGCTGTATTAGTATTTTATACAATTTTCATTTTTATTGTATACATGTACATGTAATTGCATTCTGGGT
Unaligned ( gi|16 ): GTTCGTATTGTATATTTTGTATGATATTCTATATTTATATATTTATATTGTATCTCTTACATTAGTATTGTAAAATCTCTTCATTTAGGTCGTAAAACAAACATTTGTATTCATTACTGCAGTATTTGCACATCATTTCTATTTTTATTGTATAATTGCATTTTGGGGATGCTTGTTTACTTTGT
Alignments
lowQualScore : 22222222222222222222222 1 1 4444444444444444444444444444444444 111111111111111111 2222222222
lowQualScore : 11111111111111111111111 5555555 3333 1 5555555 3 3333 8888888 88888 1 22 3 66666666 44444 1 3333 333 4 2 2 2 2 6 22 4 1 1 5555555555555555555555555555555555 4 333 2 22 6666 2 55 77 6666666666 9999999 222222222222222222 3 7777777 4 33 55 2 3333333333 2 2 2 55
lowQualScore : ....................... ....... .... . ....... . .... ....... ..... . .. . ........ ..... . .... ... . . . . . . .. . . . .................................. . ... . .. .... . .. .. .......... ....... .................. . ....... . .. .. . .......... . . . ..
lowQualScore : 77777777777777777777777 7777777 7777 7 0000000 6 7777 5555555 33333 8 55 3 33333333 33333 7 7777 333 6 1 1 1 1 3 99 7 4 3 1111111111111111111111111111111111 0 888 0 88 2222 0 33 55 6666666666 2222222 888888888888888888 4 6666666 7 99 99 5 5555555555 4 5 5 99
consensus : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTC----A-ATN-T----T-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTNCA--------T-----TT-GTA----TTCTATA---TTTGCTCATTTGTATTTA-AT-A-AT-T-T--TT-ATTTATATTG--TA-------A---TGTA------TA-TAT-TGTTT-CATTTN--TAT-TCT--ATA----TT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TAT--TGTATAATAT-T-T--ATTTATATTCTAT
Reference ( family-2945 ) : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTC----A-ATN-T----T-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTNCA--------T-----TT-GTA----TTCTATA---TTTGCTCATTTGTATTTA-AT-A-AT-T-T--TT-ATTTATATTG--TA-------A---TGTA------TA-TAT-TGTTT-CATTTN--TAT-TCT--ATA----TT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TAT--TGTATAATAT-T-T--ATTTATATTCTAT
gi|1 : GACATGCT----GTTGCAATATTCAATATTT------------------------------------GTATTC----A-GTC-T----T-CA----T---AC--ATTAC----TATTGTAT-A--TTATTGTAACATTAATT-----TT-GTA----TTCTATA---TTT-CTCATTTGTAGTTA-AT-A-AT-T-C--TTGATTCGTTTTG--TA------------------------TAT-TGATT-TATTTG--AAT-TCT--AGAAATTTT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TCT--AG----ATTT-T-T--ATTTATAT
gi|1 : atTATTCTATATTTCT------------------C----AT-------TTGTAGTT----A-ATAAT----T-CT----T---G---ATTCG----TTTTGTAT-A--TTGATTTA--------T-----TT-GAA----TTCTAGAAATTTTTCTCATTTGTATTTA-AT-A-AC-TGT--TG-ATTTGTATTGTCTAGATTTTTA---TTTA------TA-TA--TGT----ATTTA--AAT-TTT--A---------TC-TGACA-------C--TTAC-------ATT---T----------T---CATTGT-------AG-ATTatgtatttaaattttatctgacacttacattttcattgtagattcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|10 : atgacatgctgttgcaatattcaatatttgtattcagtcttcatacattactattgtatattattgtaacattaattttgGGCAGACTAAACGTTACAATATTCAA-ATTTT----A--------------TCAAAGT-------TTG-A--C----A-ATA-T----C-CA----T---AC--ATTTC----TATTTTAT-A--GTGTTACA--------T-----TT-GTA----TTCCATA---TTT-TTCATTTG----TA-AT-G-AC-T-C--TTGAT---TATTG--TA-------T---AGCA------CATTAT-TACTT-CATTTG--TAT-TTT--ATA----TT-TC-T--AA-------T--TTGG-------ATT---T---A------T---AACTGG-------CG-ATTTGTATT--G-TA-----TATATTAT-A-T--ATATACACTCTGTcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|11 : atATAGTTCA---A--------------T----AT-------TTGTATTC----A-ATA-T----T-CA----T---AC--AATTC----TATT-TAT-A--GTGTTACA--------T-----TT-GTA----TTCTATA---TCTGCTAATGTGTATTTA-AT-A-TT-T-T--TT-ATTTAAATTG--TA-------T---AATA------T--TAT-TGTTT-CATTTG--TAT-TCT--ATA----TT-TG-T--CA-------T--TTGC-------ATT---T-A-A------T---CGCTGT-------TG-GTTTGTATT--G-T-T---------TAT-T-T--TTTTATAattcatagatatttaa
gi|13 : tGGCATACCAAACGTTGCAATATTCAATATTTTTGTAA--------------T----AT-------TTGTATTC----T-ATA-TTTGCT-CATTTGT---ACTTATTTTTTA-TATTGTAT-ATTTTTTTTCA--------A-----TT-CTG----TTCTATA---TTT-CTCATTTATATTTG-AT-A-A-------CT-ATTGAT-TTG--TA-------A---TGTA------TA--AT---TTT-TATTTA--TAT-TCT--ATA----TT-TA-TA-TA-------T--TTAT-------ATT---atgtgttgaattttgaaaatctctagatc
gi|14 : GGAATGCCAATCGTTGCAATATTTTATATTCTT---AATTAAATAAAATTAT----AT-------TAGCATTC----G-ATA-G----T-CA----T---AT--ATTTT----TTTTGTAT-A--TTGTTACA--------T-----TTTGTA----TTATATA---GT-GCTCACTTGTGTTTATGT-T-AT-T-T--TTCAGTT---TTG-----------A---TTTA------TA-T------TC-CATCTTAATATATTT--ATA----TT-TCAT--CA-------C--TTAC-------A-T---T-A-A------T---Aatatatcttacattagt
gi|17 : tatGGCATGCCAAACATTGCAATATTCAGTCTTTTT---A--------------T----AT-------TTGTATTC----A-GTC-T----T-TG----T---AC--ATTTC----TATTGTAT-A--TTGTTACA--------T-----TT-GTA----TTCTAttatacatct
gi|18 : gtatatattactgattttgtagtaaatctgttacttgagaactgcattatgcaaagtattcaataaataaatgttcatgtaatactatGGGATGCCAACCATTGCAATATTCATTATGTTT---A--------------T----AT-------TTGTATTC----A-AAC-T----T-CA----T---AT--AATTG----TATTGTAT-A--TTGTTTCA--------T-----TT-GTA----TTCTATA---TTTA-TCATTT
gi|19 : ataaatagcagttggaaaatcatgcttgttatgaacaaactcattgtgcagatgtaaaactatA----T---AC--ATCTC----TATAA-AT-A--TTGCTTTG--------T-----TT-ATTGCTTTTCTACA---TTTGCTCATTTGTTTTTA-AT-A-AC-T-C--TCAATCTATAT----TC-------A---TTTG------TA-CAT-TGTTT-CGTTTC--TAT-TCT--ATAT---TT-TC-T--CA-------T--TTGT-------AT
gi|2 : atgttagagatgcaGTAT-A--AGGTTTCA--------TATGACTT-GTA----TTCTACA---TTT-CTCATTTGTATTTA-AT-A-GTGT-T--TT-ATTTATATTG--TA------------------------TAC-GGTTT-CATTTG--TAA-TCT--ATA----TA-T------A-------T--TTGT-------ATT---T-G-A------T---AAATGT-------TG-ATTT-------G-TAT--TGTATGATTT-T-T--ATTTATATTTTATcaaaatcatgtaat
gi|2 : TATTCTACATTTCT------------------C----AT-------TTGTATTT----A-ATA-G----T-GT----T---TT--ATTTA----TATTGTAT-A--CGGTTTCA--------T-----TT-GTA----ATCTATA---TAT----ATTTGTATTTG-ATAA-AT-G-T--TG-ATTTGTATTG--TATG-----A---TTTT------TA-TTTATATTT-TATATT--TAT-ATT--ATA----TT-TC-T--TA-------CCATAGT-------ATTG--T-A-AAT----T---CAC--T-------TC-ATTTAGATC--G-TA-----TATA-----T-C--ATTTGTATTatttatattatatttcttaccatagtattgtaaattcacttcatttagatcgtatatatcatttgtattgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|2 : gtataaggtttcatatgacttgT---A--------------T----AT-------TTGTATTTGATAA-ATG-T----T-GA----T---------TTG----TATTGTATGA--TTTTT--A--------T-----TT-ATA----TTTTATA---T--------TTATATT---AT-A-TT-T-C--TT-A-CCATA--G--TA-------T---TGTA------AA-T-T-CACTT-CATTTA--GAT-CGT--ATA-------TA-T--CA-------T--TTGT-------ATT---G-G-G------T----ACTGC-------TATATTTGTATT--G-TA---TACGTAATTT-C-T--ATTTATATTGTATgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|20 : gtataaggtttcatatgacttgtattctacatttctcatttgtatttaatagtgttttatttatattgtatacggtttcatttgtaatctataGGCATGCCAAGCGTTGCAATATTCAATACTTTT---A--------------T----ATTTGCCAATTGTGTTC----GCATA-G----T-CA----TTTGAC--ATTTCGGTTCAGTGTAT-A--GCGTTAAC--------T-----TT-ATA----agttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|21 : tattagtcaatacataatcaagactatcatctccattagaaggaaatgtatCATGTCAAACGTTGCAATATTTGGTAGTTTT------------------T----GC-------TC--ATTT----A-TCA-T----G-CA----T---AT--ATTTC----CATGGTAT-A--TTGTAATA--------T-----TT-CTA----TCCGATA---TGTGCTCATTT
gi|22 : taagtTGCCAAGAG---CAATATTCAATGTTTCT---A--------------T----AT-------GTGTATTT----A-GTC-G----T-CA----T---AC--ACTTC----TAagtcatgtttt
gi|23 : ATACCAAACGTTGCAATATTCAATATGTTT------------------T----GT-------GTGTAGTC----A-AGC-T----C-CA----T---
gi|24 : ttgaCCGAACGTTGCAGTATTCAATACTTTT---A--------------T----AT-------TTGTATCC----A-A
gi|3 : GACATGTCAAATATTACAATATTCAATGTCTAT---A-------------------AT-------TTGTGTTC----A-GTC-T----T-CA----T---AC--ATTCC----TATT------------------------------------------CTATA---TTAGCTCATTTGTATTTA-AT-A-AT-T-C--TCGATTTATATCG--TA---------------------TA-TA---GTTT-CATTTC--TAT-TCTTCAT-----TT-TC-T--CA-------T--TTGT-------ATT---T-A-ATACATGT---AACTGC-------TG-A-----AGT--G-TAA--TGAATAATTG-T-T--ATTTCTATTCTATattac
gi|3 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaataTATTCTATATTAGC---T--------------C----AT-------TTGTATTT----A-ATAAT----T-C-----T---CG--ATTTA----TATCGTAT-A--TAGTTTCA--------T-----TT-CTA----TTCTTCA---TTTTCTCATTTGTATTTA-AT-ACAT-G-TAACT-GCTGA-AGTG--TA-------A---TGAA------TA--AT-TGTT---ATTTC--TAT-TCT--ATG----TTGTA-T--TA-------T--TTATGCTCAAAATTAGGT-C-A------TTA-AATTGT-------TG---TTGTATT--GTTAT--TGT-T--TGT-T-TACATTTATATTgttgtattatttatgctcaaaattaggtcattaaattgttgttgtattgttattgtttgtttacatttatatttaattttaatattgtaaattgcctcatt
gi|4 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaatagacatgtcaaatattacaatattcaatgtctataatttgtgttcagtcttcatacattccT-------TTGTATTT----A-ATG-T----TGTA----T----T--ATTTA----TATCGTAT-A--TTGCTTCA--------T-----TT-ATA----TTCTTTA---ATT-CTCCGTTATATTTA-TT-A-AT-T-T--TTGATTTATA--------------A---TGTA------TA---T-TGTTT-CATTTC--TTT-TCT--ATA----TT-TC-T--CA-------C--TTTT-------ATT---T-A-A------T---AAC--T-------TG-AT-----TT--G-TAT--TGTATACTAT-T-T--ATCTATATTTTATtaattttaatattgtaaattgcctcatt
gi|5 : tcgT-------TTGTATTT----A-ATG-T----TGTA----T----T--ATTTA----TATCGTAT-A--TTGCTTCA--------T-----TT-ATA----TTCTTTA---ATT-CTCCGTTATATTTA-TT-A-AT-T-T--TTGATTTATA--------------A---TGTA------TA---T-TGTTT-CATTTC--TTT-TCT--ATA----TT-TC-T--CA-------C--TTTT-------ATT---T-A-A------T---AAC--T-------TG-AT-----TT--G-TAT--TGTATACTAT-T-T--ATCTATATTTTATatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : cgTTTACATTTC--CAT-TCA--ACA----TT-T--TAACA-------T--TTAT-------ATC---T-A-A------T---AATTGT-------CG-ATTTGTATT--G-TA----G---AATAT-T-TC-ATTTCTATTCatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : TTACA--------T-----TT-CCA----TTCAACA---TTTTAACATTTATATCTA-AT-A-AT-TGT--CG-ATTTGTATTG--TA------------GAA------TA-------TTT-CATTTC--TAT-------------------T--CA-------T--TTGT-------G-C---T-A-A------C---A--TGT-------T---TTTTCATT--C-TTTTCTGTAT-ACAT-T-T--ATTTACATTCCATatttgtgctaacatgttttttcattcttttctgtatacatttatttacattccatatttagcaattgtattataatttcatttcattaagactggaaacatgttatttgtattaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|6 : tATTCAACATTTTA---A--------------C----AT-------TTATATCT----A-ATA-A----T-TG----T---CG--ATTTG----TATTGTAG-A--ATATTTCA--------T-----TT-CTA----TTC-ATT---TGTGCTAACATGTTTTT---T-C-AT-T-C--TT--TTC---------------------TGTA------TA-CA-----TT-TATTTA--CAT-TCC--ATA----TT-TA-G--CA-------A--TTGT-------ATT-------A------T---AAT--T-------TC-ATTT-CATTAAG--AC--TGGA-AACATGT-T--ATTTGTATTatttagcaattgtattataatttcatttcattaagactggaaacatgttatttgtattaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|7 : tttacatttccGACATGTCAATCGCTGCAATACTCAATATTTTT------------------T----AT-------TTGTATTC----A-ATC-T----C-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTACA--------T-----AT-GTA----TTCTATA---TTTGCTAATTTGTATTT--GT-G-TT-T-T--CT-ATTCATATTA--TAT------ACTTTTTA------TT-TAT-TTTCTGCATTTA--TAT---T--GTA----TC-TC-T--TAGAATAGTT--TTGCAA-----ATT---T-ACA------TTTAAATCGTAAACAAATA-ATTTGTA-------AT--CG-ATACTGC-TAT--ATTTATATTTCATaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|8 : aatttacaagctttcagaggtgttttatGGCATGCCAAACGTTGCAATATTCGATATTTTT---A--------------C----AT-------TTGCATTC----A-ATC-T----T-CA----T---AA--TTTTT----TATTGTAT-A--TTGTTTCA--------T-----TT-GTA----TTTTATA---TTT-CTCATGTGTATTTA-AT-A-AT-TGT--TG-ATTTGTATTG--C------------T------------TAC-T-TTT-TATTTA--AAT-TCT--ATA----TA-TT-T--AA-------A--TTGT-------AT---------------------CTGT-------TACATTAGTATT--G-TA-----AATTATCT-T-C--ATTTGTA
gi|9 : taaattaatattgaacaacatGACATGCCAAACATTGCAATATTCAATAGTTTT---A--------------T----AT-------TTGTATTC----A-ATA-T----T-CA----T---AC--ATTTC----TGTTGTAT-A--TTGTTACA--------T-----TT-GTA----TTCTATA---CCTGCTCACTTGTATTTA-TT-T-AT-C-T--TT-ATTTATATTG--TAC------A---TGTAGAAGTCTA-TAT-TGTTT-CATTTG--TAT-TCT--ATA----TT-TC-T--CA-------T--TTG--------ATT---TAA-A------T---AACTGT-------TG-ATATGTATTC-A-TAT--TGTATAATAG-T-T--AATAATATTCTATgagttaagtgccaatat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATTATATATCAACCTACATTTTGATTACAAGTTATCCATACTTTTATAATAAAAAAATATGTAATTTCCATTTGTATGGCATAATTGCATTCTTGGTAATGTTTGTTTACTTTGTTACGAAGGGTTTCATTCGTCCAATTTATGAGACTGCACTTCCTTAATAGCTGCGTATGCTAAGTAAGTAACCACATCTTGCATAATCGACACTATC
Unaligned ( gi|15 ): ATTTATAGAGATGTATTGCATCTCTAACATTAATATTGTAATTTCCTTCACACAGGTCTTAAAAGTAGGTTGTATTCCATATTACTCATTACATATTACATTGAATTCCAACCTAAATTTCTATTTTAAGACCGCTGTATTAGTATTTTATACAATTTTCATTTTTATTGTATACATGTACATGTAATTGCATTCTGGGT
Unaligned ( gi|16 ): GTTCGTATTGTATATTTTGTATGATATTCTATATTTATATATTTATATTGTATCTCTTACATTAGTATTGTAAAATCTCTTCATTTAGGTCGTAAAACAAACATTTGTATTCATTACTGCAGTATTTGCACATCATTTCTATTTTTATTGTATAATTGCATTTTGGGGATGCTTGTTTACTTTGT
Alignments
lowQualScore : 22222222222222222222222 1 1 4444444444444444444444444444444444 111111111111111111 2222222222
lowQualScore : 11111111111111111111111 5555555 3333 1 5555555 3 3333 8888888 88888 1 22 3 66666666 44444 1 3333 333 4 2 2 2 2 6 22 4 1 1 5555555555555555555555555555555555 4 333 2 22 6666 2 55 77 6666666666 9999999 222222222222222222 3 7777777 4 33 55 2 3333333333 2 2 2 55
lowQualScore : ....................... ....... .... . ....... . .... ....... ..... . .. . ........ ..... . .... ... . . . . . . .. . . . .................................. . ... . .. .... . .. .. .......... ....... .................. . ....... . .. .. . .......... . . . ..
lowQualScore : 77777777777777777777777 7777777 7777 7 0000000 6 7777 5555555 33333 8 55 3 33333333 33333 7 7777 333 6 1 1 1 1 3 99 7 4 3 1111111111111111111111111111111111 0 888 0 88 2222 0 33 55 6666666666 2222222 888888888888888888 4 6666666 7 99 99 5 5555555555 4 5 5 99
consensus : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTC----A-ATN-T----T-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTNCA--------T-----TT-GTA----TTCTATA---TTTGCTCATTTGTATTTA-AT-A-AT-T-T--TT-ATTTATATTG--TA-------A---TGTA------TA-TAT-TGTTT-CATTTN--TAT-TCT--ATA----TT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TAT--TGTATAATAT-T-T--ATTTATATTCTAT
Reference ( family-2945 ) : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTC----A-ATN-T----T-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTNCA--------T-----TT-GTA----TTCTATA---TTTGCTCATTTGTATTTA-AT-A-AT-T-T--TT-ATTTATATTG--TA-------A---TGTA------TA-TAT-TGTTT-CATTTN--TAT-TCT--ATA----TT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TAT--TGTATAATAT-T-T--ATTTATATTCTAT
gi|1 : GACATGCT----GTTGCAATATTCAATATTT------------------------------------GTATTC----A-GTC-T----T-CA----T---AC--ATTAC----TATTGTAT-A--TTATTGTAACATTAATT-----TT-GTA----TTCTATA---TTT-CTCATTTGTAGTTA-AT-A-AT-T-C--TTGATTCGTTTTG--TA------------------------TAT-TGATT-TATTTG--AAT-TCT--AGAAATTTT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TCT--AG----ATTT-T-T--ATTTATAT
gi|1 : atTATTCTATATTTCT------------------C----AT-------TTGTAGTT----A-ATAAT----T-CT----T---G---ATTCG----TTTTGTAT-A--TTGATTTA--------T-----TT-GAA----TTCTAGAAATTTTTCTCATTTGTATTTA-AT-A-AC-TGT--TG-ATTTGTATTGTCTAGATTTTTA---TTTA------TA-TA--TGT----ATTTA--AAT-TTT--A---------TC-TGACA-------C--TTAC-------ATT---T----------T---CATTGT-------AG-ATTatgtatttaaattttatctgacacttacattttcattgtagattcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|10 : atgacatgctgttgcaatattcaatatttgtattcagtcttcatacattactattgtatattattgtaacattaattttgGGCAGACTAAACGTTACAATATTCAA-ATTTT----A--------------TCAAAGT-------TTG-A--C----A-ATA-T----C-CA----T---AC--ATTTC----TATTTTAT-A--GTGTTACA--------T-----TT-GTA----TTCCATA---TTT-TTCATTTG----TA-AT-G-AC-T-C--TTGAT---TATTG--TA-------T---AGCA------CATTAT-TACTT-CATTTG--TAT-TTT--ATA----TT-TC-T--AA-------T--TTGG-------ATT---T---A------T---AACTGG-------CG-ATTTGTATT--G-TA-----TATATTAT-A-T--ATATACACTCTGTcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|11 : atATAGTTCA---A--------------T----AT-------TTGTATTC----A-ATA-T----T-CA----T---AC--AATTC----TATT-TAT-A--GTGTTACA--------T-----TT-GTA----TTCTATA---TCTGCTAATGTGTATTTA-AT-A-TT-T-T--TT-ATTTAAATTG--TA-------T---AATA------T--TAT-TGTTT-CATTTG--TAT-TCT--ATA----TT-TG-T--CA-------T--TTGC-------ATT---T-A-A------T---CGCTGT-------TG-GTTTGTATT--G-T-T---------TAT-T-T--TTTTATAattcatagatatttaa
gi|13 : tGGCATACCAAACGTTGCAATATTCAATATTTTTGTAA--------------T----AT-------TTGTATTC----T-ATA-TTTGCT-CATTTGT---ACTTATTTTTTA-TATTGTAT-ATTTTTTTTCA--------A-----TT-CTG----TTCTATA---TTT-CTCATTTATATTTG-AT-A-A-------CT-ATTGAT-TTG--TA-------A---TGTA------TA--AT---TTT-TATTTA--TAT-TCT--ATA----TT-TA-TA-TA-------T--TTAT-------ATT---atgtgttgaattttgaaaatctctagatc
gi|14 : GGAATGCCAATCGTTGCAATATTTTATATTCTT---AATTAAATAAAATTAT----AT-------TAGCATTC----G-ATA-G----T-CA----T---AT--ATTTT----TTTTGTAT-A--TTGTTACA--------T-----TTTGTA----TTATATA---GT-GCTCACTTGTGTTTATGT-T-AT-T-T--TTCAGTT---TTG-----------A---TTTA------TA-T------TC-CATCTTAATATATTT--ATA----TT-TCAT--CA-------C--TTAC-------A-T---T-A-A------T---Aatatatcttacattagt
gi|17 : tatGGCATGCCAAACATTGCAATATTCAGTCTTTTT---A--------------T----AT-------TTGTATTC----A-GTC-T----T-TG----T---AC--ATTTC----TATTGTAT-A--TTGTTACA--------T-----TT-GTA----TTCTAttatacatct
gi|18 : gtatatattactgattttgtagtaaatctgttacttgagaactgcattatgcaaagtattcaataaataaatgttcatgtaatactatGGGATGCCAACCATTGCAATATTCATTATGTTT---A--------------T----AT-------TTGTATTC----A-AAC-T----T-CA----T---AT--AATTG----TATTGTAT-A--TTGTTTCA--------T-----TT-GTA----TTCTATA---TTTA-TCATTT
gi|19 : ataaatagcagttggaaaatcatgcttgttatgaacaaactcattgtgcagatgtaaaactatA----T---AC--ATCTC----TATAA-AT-A--TTGCTTTG--------T-----TT-ATTGCTTTTCTACA---TTTGCTCATTTGTTTTTA-AT-A-AC-T-C--TCAATCTATAT----TC-------A---TTTG------TA-CAT-TGTTT-CGTTTC--TAT-TCT--ATAT---TT-TC-T--CA-------T--TTGT-------AT
gi|2 : atgttagagatgcaGTAT-A--AGGTTTCA--------TATGACTT-GTA----TTCTACA---TTT-CTCATTTGTATTTA-AT-A-GTGT-T--TT-ATTTATATTG--TA------------------------TAC-GGTTT-CATTTG--TAA-TCT--ATA----TA-T------A-------T--TTGT-------ATT---T-G-A------T---AAATGT-------TG-ATTT-------G-TAT--TGTATGATTT-T-T--ATTTATATTTTATcaaaatcatgtaat
gi|2 : TATTCTACATTTCT------------------C----AT-------TTGTATTT----A-ATA-G----T-GT----T---TT--ATTTA----TATTGTAT-A--CGGTTTCA--------T-----TT-GTA----ATCTATA---TAT----ATTTGTATTTG-ATAA-AT-G-T--TG-ATTTGTATTG--TATG-----A---TTTT------TA-TTTATATTT-TATATT--TAT-ATT--ATA----TT-TC-T--TA-------CCATAGT-------ATTG--T-A-AAT----T---CAC--T-------TC-ATTTAGATC--G-TA-----TATA-----T-C--ATTTGTATTatttatattatatttcttaccatagtattgtaaattcacttcatttagatcgtatatatcatttgtattgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|2 : gtataaggtttcatatgacttgT---A--------------T----AT-------TTGTATTTGATAA-ATG-T----T-GA----T---------TTG----TATTGTATGA--TTTTT--A--------T-----TT-ATA----TTTTATA---T--------TTATATT---AT-A-TT-T-C--TT-A-CCATA--G--TA-------T---TGTA------AA-T-T-CACTT-CATTTA--GAT-CGT--ATA-------TA-T--CA-------T--TTGT-------ATT---G-G-G------T----ACTGC-------TATATTTGTATT--G-TA---TACGTAATTT-C-T--ATTTATATTGTATgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|20 : gtataaggtttcatatgacttgtattctacatttctcatttgtatttaatagtgttttatttatattgtatacggtttcatttgtaatctataGGCATGCCAAGCGTTGCAATATTCAATACTTTT---A--------------T----ATTTGCCAATTGTGTTC----GCATA-G----T-CA----TTTGAC--ATTTCGGTTCAGTGTAT-A--GCGTTAAC--------T-----TT-ATA----agttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|21 : tattagtcaatacataatcaagactatcatctccattagaaggaaatgtatCATGTCAAACGTTGCAATATTTGGTAGTTTT------------------T----GC-------TC--ATTT----A-TCA-T----G-CA----T---AT--ATTTC----CATGGTAT-A--TTGTAATA--------T-----TT-CTA----TCCGATA---TGTGCTCATTT
gi|22 : taagtTGCCAAGAG---CAATATTCAATGTTTCT---A--------------T----AT-------GTGTATTT----A-GTC-G----T-CA----T---AC--ACTTC----TAagtcatgtttt
gi|23 : ATACCAAACGTTGCAATATTCAATATGTTT------------------T----GT-------GTGTAGTC----A-AGC-T----C-CA----T---
gi|24 : ttgaCCGAACGTTGCAGTATTCAATACTTTT---A--------------T----AT-------TTGTATCC----A-A
gi|3 : GACATGTCAAATATTACAATATTCAATGTCTAT---A-------------------AT-------TTGTGTTC----A-GTC-T----T-CA----T---AC--ATTCC----TATT------------------------------------------CTATA---TTAGCTCATTTGTATTTA-AT-A-AT-T-C--TCGATTTATATCG--TA---------------------TA-TA---GTTT-CATTTC--TAT-TCTTCAT-----TT-TC-T--CA-------T--TTGT-------ATT---T-A-ATACATGT---AACTGC-------TG-A-----AGT--G-TAA--TGAATAATTG-T-T--ATTTCTATTCTATattac
gi|3 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaataTATTCTATATTAGC---T--------------C----AT-------TTGTATTT----A-ATAAT----T-C-----T---CG--ATTTA----TATCGTAT-A--TAGTTTCA--------T-----TT-CTA----TTCTTCA---TTTTCTCATTTGTATTTA-AT-ACAT-G-TAACT-GCTGA-AGTG--TA-------A---TGAA------TA--AT-TGTT---ATTTC--TAT-TCT--ATG----TTGTA-T--TA-------T--TTATGCTCAAAATTAGGT-C-A------TTA-AATTGT-------TG---TTGTATT--GTTAT--TGT-T--TGT-T-TACATTTATATTgttgtattatttatgctcaaaattaggtcattaaattgttgttgtattgttattgtttgtttacatttatatttaattttaatattgtaaattgcctcatt
gi|4 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaatagacatgtcaaatattacaatattcaatgtctataatttgtgttcagtcttcatacattccT-------TTGTATTT----A-ATG-T----TGTA----T----T--ATTTA----TATCGTAT-A--TTGCTTCA--------T-----TT-ATA----TTCTTTA---ATT-CTCCGTTATATTTA-TT-A-AT-T-T--TTGATTTATA--------------A---TGTA------TA---T-TGTTT-CATTTC--TTT-TCT--ATA----TT-TC-T--CA-------C--TTTT-------ATT---T-A-A------T---AAC--T-------TG-AT-----TT--G-TAT--TGTATACTAT-T-T--ATCTATATTTTATtaattttaatattgtaaattgcctcatt
gi|5 : tcgT-------TTGTATTT----A-ATG-T----TGTA----T----T--ATTTA----TATCGTAT-A--TTGCTTCA--------T-----TT-ATA----TTCTTTA---ATT-CTCCGTTATATTTA-TT-A-AT-T-T--TTGATTTATA--------------A---TGTA------TA---T-TGTTT-CATTTC--TTT-TCT--ATA----TT-TC-T--CA-------C--TTTT-------ATT---T-A-A------T---AAC--T-------TG-AT-----TT--G-TAT--TGTATACTAT-T-T--ATCTATATTTTATatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : cgTTTACATTTC--CAT-TCA--ACA----TT-T--TAACA-------T--TTAT-------ATC---T-A-A------T---AATTGT-------CG-ATTTGTATT--G-TA----G---AATAT-T-TC-ATTTCTATTCatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : TTACA--------T-----TT-CCA----TTCAACA---TTTTAACATTTATATCTA-AT-A-AT-TGT--CG-ATTTGTATTG--TA------------GAA------TA-------TTT-CATTTC--TAT-------------------T--CA-------T--TTGT-------G-C---T-A-A------C---A--TGT-------T---TTTTCATT--C-TTTTCTGTAT-ACAT-T-T--ATTTACATTCCATatttgtgctaacatgttttttcattcttttctgtatacatttatttacattccatatttagcaattgtattataatttcatttcattaagactggaaacatgttatttgtattaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|6 : tATTCAACATTTTA---A--------------C----AT-------TTATATCT----A-ATA-A----T-TG----T---CG--ATTTG----TATTGTAG-A--ATATTTCA--------T-----TT-CTA----TTC-ATT---TGTGCTAACATGTTTTT---T-C-AT-T-C--TT--TTC---------------------TGTA------TA-CA-----TT-TATTTA--CAT-TCC--ATA----TT-TA-G--CA-------A--TTGT-------ATT-------A------T---AAT--T-------TC-ATTT-CATTAAG--AC--TGGA-AACATGT-T--ATTTGTATTatttagcaattgtattataatttcatttcattaagactggaaacatgttatttgtattaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|7 : tttacatttccGACATGTCAATCGCTGCAATACTCAATATTTTT------------------T----AT-------TTGTATTC----A-ATC-T----C-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTACA--------T-----AT-GTA----TTCTATA---TTTGCTAATTTGTATTT--GT-G-TT-T-T--CT-ATTCATATTA--TAT------ACTTTTTA------TT-TAT-TTTCTGCATTTA--TAT---T--GTA----TC-TC-T--TAGAATAGTT--TTGCAA-----ATT---T-ACA------TTTAAATCGTAAACAAATA-ATTTGTA-------AT--CG-ATACTGC-TAT--ATTTATATTTCATaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|8 : aatttacaagctttcagaggtgttttatGGCATGCCAAACGTTGCAATATTCGATATTTTT---A--------------C----AT-------TTGCATTC----A-ATC-T----T-CA----T---AA--TTTTT----TATTGTAT-A--TTGTTTCA--------T-----TT-GTA----TTTTATA---TTT-CTCATGTGTATTTA-AT-A-AT-TGT--TG-ATTTGTATTG--C------------T------------TAC-T-TTT-TATTTA--AAT-TCT--ATA----TA-TT-T--AA-------A--TTGT-------AT---------------------CTGT-------TACATTAGTATT--G-TA-----AATTATCT-T-C--ATTTGTA
gi|9 : taaattaatattgaacaacatGACATGCCAAACATTGCAATATTCAATAGTTTT---A--------------T----AT-------TTGTATTC----A-ATA-T----T-CA----T---AC--ATTTC----TGTTGTAT-A--TTGTTACA--------T-----TT-GTA----TTCTATA---CCTGCTCACTTGTATTTA-TT-T-AT-C-T--TT-ATTTATATTG--TAC------A---TGTAGAAGTCTA-TAT-TGTTT-CATTTG--TAT-TCT--ATA----TT-TC-T--CA-------T--TTG--------ATT---TAA-A------T---AACTGT-------TG-ATATGTATTC-A-TAT--TGTATAATAG-T-T--AATAATATTCTATgagttaagtgccaatat
blockSeqs : AATTAAATAAAATTAT TTGCCAA GATA C ATTTGC G TTTG TTGAC CGGTT G TT T . ATGAC T GCTT AAT T T A C G G AA G G T TCTAGATTTTTATTTATATATG A TAA A TC T G CA GA GAATAGTT GCTCAAA TAATACATGT T AAACAAA T GT AA T TTCTGTATA A G A AC
blockSeqs : ATCAAA . . . AAT G . ACTT TTTA . . A . . . . . G . . . . G . C A T TACATGTAGAAGTCTATATTG G A . . . . C AA CCA AA AGGTCATTA T . C GT C . TTGTATGA A . . C
blockSeqs : GTAAT . . . AAT . . AC G . . A . . . . . G . . . . G . A A T TATACTTTTTATTTATTT . G . . . . C A C . TACATTTA T . . AG . . ATGAATAA T . . .
blockSeqs : AT . . . AT . . AC C . . T . . . . . A . . . . . . G A T TATGATTTTTATTTATA . G . . . . G . T . GTAAATT T . . GT . . TTGTATAC T . . .
blockSeqs : AT . . . AT . . AT C . . A . . . . . G . . . . . . G A T TATAGCACATTATTA . A . . . . A . T . TAAAT T . . GT . . TTGTATAC T . . .
blockSeqs : AT . . . AG . . AC T . . A . . . . . G . . . . . . G G T TCATTTGTACATTG . C . . . . C . T . TAAT T . . GT . . TTGTATAA G . . .
blockSeqs : AT . . . CT . . AT C . . T . . . . . G . . . . . . . A T TATAATATTATTG . G . . . . C . C . TAAT T . . TC . . TACGTAA A . . .
blockSeqs : AT . . . CT . . AC G . . T . . . . . T . . . . . . . A T TATTGTAAATTCA . T . . . . A . T . TGAT T . . GT . . CTGGAAA A . . .
blockSeqs : AT . . . AG . . TT C . . T . . . . . T . . . . . . . A T TAATGAATAATTG . A . . . . C . T . GGGT T . . GT . . TCGATAC A . . .
blockSeqs : AT . . . GT . . AT A . . T . . . . . G . . . . . . . A G TAATGTATAAT . C . . . . A . T . TAAT C . . GT . . TATAT A . . .
blockSeqs : TC . . . AG . . AC G . . A . . . . . G . . . . . . . A T ATGTATATTG . C . . . . C . T . TAAT T . . C . . TTGTT A . . .
blockSeqs : AC . . . AT . . AC C . . A . . . . . G . . . . . . . G T ATGTATATTG . C . . . . C . T . TAAT T . . . . . AATTA G . . .
blockSeqs : AC . . . CG . . CG C . . T . . . . . . . . . . . . . A T ATTTATAT . C . . . . A . C . TAAC . . . . . . TATA C . . .
blockSeqs : AT . . . CT . . CG C . . T . . . . . . . . . . . . . G T TGTATACA . C . . . . C . C . TAT . . . . . . GAA A . . .
blockSeqs : C . . . CT . . AC A . . T . . . . . . . . . . . . . A . TATACGG . C . . . . T . T . TT . . . . . . T . . . .
blockSeqs : C . . . GT . . AA A . . A . . . . . . . . . . . . . . . TATATAG . A . . . . C . T . AT . . .
blockSeqs : T . . . GT . . AC A . . T . . . . . . . . . . . . . . . TAGAATA . A . . . . . . A . .
blockSeqs : T . . . AA . . G G . . A . . . . . . . . . . . . . . . CTTACT . A . . . . . . A .
blockSeqs : A . . . CT . . T C . . T . . . . . . . G . . . . . . T .
blockSeqs : T . . . CT . . T T . . A . . . . . .
blockSeqs : . . . AT . . . C . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : AT********************* ******** **** TTGATAA***
originalCons : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTC----A-ATN-T----T-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTNCA--------T-----TT-GTA----TTCTATA---TTTGCTCATTTGTATTTA-AT-A-AT-T-T--TT-ATTTATATTG--TA-------A---TGTA------TA-TAT-TGTTT-CATTTN--TAT-TCT--ATA----TT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TAT--TGTATAATAT-T-T--ATTTATATTCTAT
finalCons : GGCATGCCAAACGTTGCAATATTCAATATTTTTAT---------------------AT-------TTGTATTC----A-ATN-T----T-CA----T---AC--ATTTC----TATTGTAT-A--TTGTTNCA--------T-----TT-GTA----TTCTATA---TTTGCTCATTTGTATTTA-AT-A-AT-T-T--TT-ATTTATATTG--TA-------A---TGTA------TA-TAT-TGTTT-CATTTN--TAT-TCT--ATA----TT-TC-T--CA-------T--TTGT-------ATT---T-A-A------T---AACTGT-------TG-ATTTGTATT--G-TATTGATAA---TAT-T-T--ATTTATATTCTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATTATATATCAACCTACATTTTGATTACAAGTTATCCATACTTTTATAATAAAAAAATATGTAATTTCCATTTGTATGGCATAATTGCATTCTTGGTAATGTTTGTTTACTTTGTTACGAAGGGTTTCATTCGTCCAATTTATGAGACTGCACTTCCTTAATAGCTGCGTATGCTAAGTAAGTAACCACATCTTGCATAATCGACACTATC
Unaligned ( gi|15 ): ATTTATAGAGATGTATTGCATCTCTAACATTAATATTGTAATTTCCTTCACACAGGTCTTAAAAGTAGGTTGTATTCCATATTACTCATTACATATTACATTGAATTCCAACCTAAATTTCTATTTTAAGACCGCTGTATTAGTATTTTATACAATTTTCATTTTTATTGTATACATGTACATGTAATTGCATTCTGGGT
Unaligned ( gi|16 ): GTTCGTATTGTATATTTTGTATGATATTCTATATTTATATATTTATATTGTATCTCTTACATTAGTATTGTAAAATCTCTTCATTTAGGTCGTAAAACAAACATTTGTATTCATTACTGCAGTATTTGCACATCATTTCTATTTTTATTGTATAATTGCATTTTGGGGATGCTTGTTTACTTTGT
Alignments
lowQualScore : 22222222222222222222222 11111111 2222222222222222222 1 555555555555555555555555555555555555555555555555 11111111 1111111111111111111 3333333333
lowQualScore : 33333333333333333333333 5555555 1 5555555 3 3333 6666666 88888 22 1 66666666 44444 1 4444 8888888888 333 88888888 0000000000000000000 2 2 4444 6 0 444444444444444444444444444444444444444444444444 2 444 2 33 9999 2 11111111 7777777 0000000000000000000 2 5 66 6666666666 6 2 2 2 33
lowQualScore : ....................... ....... . ....... . .... ....... ..... .. . ........ ..... . .... .......... ... ........ ................... . . .... . . ................................................ . ... . .. .... . ........ ....... ................... . . .. .......... . . . . ..
lowQualScore : 77777777777777777777777 9999999 8 7777777 8 9999 2222222 00000 66 7 99999999 88888 9 0000 8888888888 777 77777777 6666666666666666666 4 4 8888 5 8 111111111111111111111111111111111111111111111111 2 111 2 11 2222 2 33333333 2222222 5555555555555555555 5 3 33 7777777777 3 7 7 7 77
consensus : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTCA-ATA-T----T-CA----T---AC--ATTTC----TATTGTATA--TTGTTNCA--------T-----TT-GTA----TTCTA----------TA---TTTG-------CTCATTTGTATTTA-------------------ATA-AT-T-T--TT-ATTTATATTGTA-ATGTA------TA------------------TATTGT--------TT-CATTTN--TAT-TCT--ATA----TT-TC-T--C--ATTTGT-------ATT---T-AA------T----AACTGTTG-ATTTGTATT--GT-AT-G-ATANTAT-T-T-A--TTTATATTCTAT
Reference ( family-2945 ) : GGCATGCCAAACGTTGCAATATTCAATATTTTT---A--------------T----AT-------TTGTATTCA-ATN-T----T-CA----T---AC--ATTTC----TATTGTATA--TTGTTNCA--------T-----TT-GTA----TTCTA----------TA---TTTG-------CTCATTTGTATTTA-------------------ATA-AT-T-T--TT-ATTTATATTGTA-ATGTA------TA------------------TATTGT--------TT-CATTTN--TAT-TCT--ATA----TT-TC-T--C--ATTTGT-------ATT---T-AA------T----AACTGTTG-ATTTGTATT--GT-ATTG-ATAATAT-T-T-A--TTTATATTCTAT
gi|1 : GACATGCT----GTTGCAATATTCAATATTT------------------------------------GTATTCA-GTC-T----T-CA----T---AC--ATTAC----TATTGTATA--TTATTGTAACATTAATT-----TT-GTA----TTCTA----------TA---TTT--------CTCATTTGTAGTTA-------------------ATA-AT-T-C--TTGATTCGTTTTGTA--------------------------------TATTGA--------TT-TATTTG--AAT-TCT--AGAAATTTT-TC-T--C--ATTTGT-------ATT---T-AA------T----AACTGTTG-ATTTGTATT--GT-CTAG-AT--T-T-T-T-A--TTTATAT
gi|1 : atTATTCTATATTTCT------------------C----AT-------TTGTAGTTA-ATAAT----T-CT----T---G---ATTCG----TTTTGTATA--TTGATTTA--------T-----TT-GAA----TTCTA----------GAAATTTTT-------CTCATTTGTATTTA-------------------ATA-AC-TGT--TG-ATTTGTATTG----TCTA------GA------------------T----T--------TT-TATTTA--TA--TAT--GTA----TT-TA----A--ATTT-T-------ATC---T-GA------C-----ACT-TAC-ATTTTCATT--GT-A--G-ATTCTTT-T-C-A--TTTAatgtatttaaattttatctgacacttacattttcattgtagattcttttcatttagactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|10 : atgacatgctgttgcaatattcaatatttgtattcagtcttcatacattactattgtatattattgtaacattaattttgGGCAGACTAAACGTTACAATATTCAA-ATTTT----A--------------TCAAAGT-------TTG-A--CA-ATA-T----C-CA----T---AC--ATTTC----TATTTTATA--GTGTTACA--------T-----TT-GTA----TTCCA----------TA---TTT--------TTCATTTG----TA-------------------ATG-AC-T-C--TTGAT---TATTGTA-TAGCA------CAT-----------------TATTAC--------TT-CATTTG--TAT-TTT--ATA----TT-TC-T--A--ATTTGG-------ATT---T--A------T----AACTGGCG-ATTTGTATT--GT-AT---ATATTAT-A-T-A--TATACACTCTGTgactgtaaaaaagcatatgttttcaaaaccgctcattagcattaaacatctacctacatttctatttttagtcctctataattgtagtatatataattttcatttgtttcatataattgcattctgggtcatgcttgttttctttgttaagaaggtccaattttgatttaattggacggcattcccatatcaaatacacatgggtaagtaagtaaacacagcctgcaagtttgacgatatc
gi|11 : atATAGTTCA---A--------------T----AT-------TTGTATTCA-ATA-T----T-CA----T---AC--AATTC----TATT-TATA--GTGTTACA--------T-----TT-GTA----TTCTA----------TA---TCTG-------CTAATGTGTATTTA-------------------ATA-TT-T-T--TT-ATTTAAATTGTA-TAATA------T-------------------TATTGT--------TT-CATTTG--TAT-TCT--ATA----TT-TG-T--C--ATTTGC-------ATT---T-AA------T----CGCTGTTG-GTTTGTATT--GT--T-------TAT-T-T-T--TTTATAattcatagatatttaa
gi|13 : tGGCATACCAAACGTTGCAATATTCAATATTTTTGTAA--------------T----AT-------TTGTATTCT-ATA-TTTGCT-CATTTGT---ACTTATTTTTTA-TATTGTATATTTTTTTTCA--------A-----TT-CTG----TTCTA----------TA---TTT--------CTCATTTATATTTG-------------------ATA-A-------CT-ATTGAT-TTGTA-ATGTA------TA-------------------AT--T--------TT-TATTTA--TAT-TCT--ATA----TT-TA-TA-T--ATTTAT-------ATT---atgtgttgaattttgaaaatctctagatc
gi|14 : GGAATGCCAATCGTTGCAATATTTTATATTCTT---AATTAAATAAAATTAT----AT-------TAGCATTCG-ATA-G----T-CA----T---AT--ATTTT----TTTTGTATA--TTGTTACA--------T-----TTTGTA----TTATA----------TA---GT-G-------CTCACTTGTGTTTAT------------------GTT-AT-T-T--TTCAGTT---TTG---ATTTA------TA------------------T-------------TC-CATCTTAATATATTT--ATA----TT-TCAT--C--ACTTAC-------A-T---T-AA------T----Aatatatcttacattagt
gi|17 : tatGGCATGCCAAACATTGCAATATTCAGTCTTTTT---A--------------T----AT-------TTGTATTCA-GTC-T----T-TG----T---AC--ATTTC----TATTGTATA--TTGTTACA--------T-----TT-GTA----TTCTA----------ttatacatct
gi|18 : gtatatattactgattttgtagtaaatctgttacttgagaactgcattatgcaaagtattcaataaataaatgttcatgtaatactatGGGATGCCAACCATTGCAATATTCATTATGTTT---A--------------T----AT-------TTGTATTCA-AAC-T----T-CA----T---AT--AATTG----TATTGTATA--TTGTTTCA--------T-----TT-GTA----TTCTA----------TA---TTTA--------TCATTT
gi|19 : ataaatagcagttggaaaatcatgcttgttatgaacaaactcattgtgcagatgtaaaactatA----T---AC--ATCTC----TATAA-ATA--TTGCTTTG--------T-----TT-ATTGCTTTTCTA----------CA---TTTG-------CTCATTTGTTTTTA-------------------ATA-AC-T-C--TCAATCTATAT--TC-ATTTG------TA------------------CATTGT--------TT-CGTTTC--TAT-TCT--ATAT---TT-TC-T--C--ATTTGT-------AT
gi|2 : atgttagagatgcaGTATA--AGGTTTCA--------TATGACTT-GTA----TTCTA----------CA---TTT--------CTCATTTGTATTTA-------------------ATA-GTGT-T--TT-ATTTATATTG--------------TA------------------TACGGT--------TT-CATTTG--TAA-TCT--ATA----TA-T--------ATTTGT-------ATT---T-GA------T----AAATGTTG-ATTTGTATT--GT-A-TG-AT--T-T-T-T-A--TTTATATTTTATcaaaatcatgtaat
gi|2 : TATTCTACATTTCT------------------C----AT-------TTGTATTTA-ATA-G----T-GT----T---TT--ATTTA----TATTGTATA--CGGTTTCA--------T-----TT-GTA----ATCTATATATATTTGTA---TTTGATAAATGTTGATTTGTATTGT-------------------ATG-AT-T-T--TT-ATTTATATTTTATATTTA------TATTATATTTCTTACCATAGTATTGTAAATTCACTT-CATTTA--GAT-CGT--ATA-------TA-T--C--ATTTGT-------ATT---G-GG------T-----ACTGCTATATTTGTATT--GT-ATAC-GTAATTT-C-T-A--TTTATATTGTATatttatattatatttcttaccatagtattgtaaattcacttcatttagatcgtatatatcatttgtattgggtactgctatatttgtattgtatacgtaatttctatttatattgtatagttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|20 : gtataaggtttcatatgacttgGGCATGCCAAGCGTTGCAATATTCAATACTTTT---A--------------T----ATTTGCCAATTGTGTTCGCATA-G----T-CA----TTTGAC--ATTTCGGTTCAGTGTATA--GCGTTAAC--------T-----TT-ATA----agttgcatttcgggtagtaattatgtttactttgttacaaaacatttcattggtccaattttattatattagcccacactttcattattaatt
gi|21 : tattagtcaatacataatcaagactatcatctccattagaaggaaatgtatCATGTCAAACGTTGCAATATTTGGTAGTTTT------------------T----GC-------TC--ATTTA-TCA-T----G-CA----T---AT--ATTTC----CATGGTATA--TTGTAATA--------T-----TT-CTA----TCCGA----------TA---TGTG-------CTCATTT
gi|22 : taagtTGCCAAGAG---CAATATTCAATGTTTCT---A--------------T----AT-------GTGTATTTA-GTC-G----T-CA----T---AC--ACTTC----TAagtcatgtttt
gi|23 : ATACCAAACGTTGCAATATTCAATATGTTT------------------T----GT-------GTGTAGTCA-AGC-T----C-CA----T---
gi|24 : ttgaCCGAACGTTGCAGTATTCAATACTTTT---A--------------T----AT-------TTGTATCCA-A
gi|3 : GACATGTCAAATATTACAATATTCAATGTCTAT---A-------------------AT-------TTGTGTTCA-GTC-T----T-CA----T---AC--ATTCC----TATT-----------------------------------------CTA----------TA---TTAG-------CTCATTTGTATTTA-------------------ATA-AT-T-C--TCGATTTATATCGTA------------TA------------------TA--GT--------TT-CATTTC--TAT-TCTTCAT-----TT-TC-T--C--ATTTGT-------ATT---T-AATACATGT----AACTGCTG-A-----AGT--GT-AATGAATAATTG-T-T-A--TTTCTATTCTATattac
gi|3 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaataTATTCTATATTAGC---T--------------C----AT-------TTGTATTTA-ATAAT----T-C-----T---CG--ATTTA----TATCGTATA--TAGTTTCA--------T-----TT-CTA----TTCTT----------CA---TTTT-------CTCATTTGTATTTA-------------------ATACAT-G-TAACT-GCTGA-AGTGTA-ATGAA------TA-------------------ATTGT--------T---ATTTC--TAT-TCT--ATG----TTGTA-T--T--ATTTATGCTCAAAATTAGGT-CA------TTA--AATTGTTG---TTGTATT--GTTATTG-TT--TGT-T-T-ACATTTATATTgttgtattatttatgctcaaaattaggtcattaaattgttgttgtattgttattgtttgtttacatttatatttaattttaatattgtaaattgcctcatt
gi|4 : tataaatgtatagttaataaagttatgaggttgttagtatagaaaatgtgcataaatagacatgtcaaatattacaatattcaatgtctataatttgtgttcagtcttcatacattccT-------TTGTATTTA-ATG-T----TGTA----T----T--ATTTA----TATCGTATA--TTGCTTCA--------T-----TT-ATA----TTCTT----------TA---ATT--------CTCCGTTATATTTA-------------------TTA-AT-T-T--TTGATTTATA------ATGTA------TA--------------------TTGT--------TT-CATTTC--TTT-TCT--ATA----TT-TC-T--C--ACTTTT-------ATT---T-AA------T----AAC--TTG-ATTTGTATT--GT------ATACTAT-T-T-A--TCTATATTTTATtaattttaatattgtaaattgcctcatt
gi|5 : tcgT-------TTGTATTTA-ATG-T----TGTA----T----T--ATTTA----TATCGTATA--TTGCTTCA--------T-----TT-ATA----TTCTT----------TA---ATT--------CTCCGTTATATTTA-------------------TTA-AT-T-T--TTGATTTATA------ATGTA------TA--------------------TTGT--------TT-CATTTC--TTT-TCT--ATA----TT-TC-T--C--ACTTTT-------ATT---T-AA------T----AAC--TTG-ATTTGTATT--GT------ATACTAT-T-T-A--TCTATATTTTATatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : cgT--------TTACATTTC--CAT-TCA--ACA----TT-T--TAAC--ATTTAT-------ATC---T-AA------T----AATTGTCG-ATTTGTATT--GT-A--G---AATAT-T-TCA--TTTCTATTCatttatatgtttatattcaatttgtatctcttacattactattgtaaagtcactccatttagatcgtttatattcaatactacccattagtaggcgtactatatatcaacattcatttctatatataagttctctatatttgtattgtttatgttgttttctgccat
gi|6 : ATTCAACATTTTA---A--------------C----AT-------TTATATCTA-ATA-A----T-TG----T---CG--ATTTG----TATTGTAGA--ATATTTCA--------T-----TT-CTA----TTC-A----------TT---TGTG-------CTAACATGTTTTT---------------------TC-AT-T-C--TT--TTC----------TGTA------TA------------------CA------------TT-TATTTA--CAT-TCC--ATA----TT-TA-G--C--AATTGT-------ATT------A------T----AAT--TTC-ATTT-CATTAAG--ACTG-GAAACATGT-T-A--TTTGTATTatttgtgctaacatgttttttcattcttttctgtatacatttatttacattccatatttagcaattgtattataatttcatttcattaagactggaaacatgttatttgtattaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|7 : tttacatttccGACATGTCAATCGCTGCAATACTCAATATTTTT------------------T----AT-------TTGTATTCA-ATC-T----C-CA----T---AC--ATTTC----TATTGTATA--TTGTTACA--------T-----AT-GTA----TTCTA----------TA---TTTG-------CTAATTTGTATTTGTGTTTTCTATTCATATTATATA-CT-T-T--TT-ATTTATTTTCT--GCATT------TA------------------TATTGT--------AT-CTCTTA--GA-------ATAG---TT-TT-G--CAAATTTAC-------ATT---TAAA------TCGTAAACAAATA-ATTTGTA-------ATCG-ATACTGC-TAT-A--TTTATATTTCATaaatactactcacatatatatcaacttacgagtacatgtctataattctaagtcggatatatttgtattgtatatgtcattttcatttgtattcatttgtataaatgtactgtttacgttgtaacaaaggatttcattagtccaatttt
gi|8 : aatttacaagctttcagaggtgttttatGGCATGCCAAACGTTGCAATATTCGATATTTTT---A--------------C----AT-------TTGCATTCA-ATC-T----T-CA----T---AA--TTTTT----TATTGTATA--TTGTTTCA--------T-----TT-GTA----TTTTA----------TA---TTT--------CTCATGTGTATTTA-------------------ATA-AT-TGT--TG-ATTTGTATTGC---T-----------------------------TACT-T--------TT-TATTTA--AAT-TCT--ATA----TA-TT-T--A--AATTGT-------AT---------------------CTGTTACATTAGTATT--GT-A--A-ATTATCT-T-C-A--TTTGTA
gi|9 : taaattaatattgaacaacatGACATGCCAAACATTGCAATATTCAATAGTTTT---A--------------T----AT-------TTGTATTCA-ATA-T----T-CA----T---AC--ATTTC----TGTTGTATA--TTGTTACA--------T-----TT-GTA----TTCTA----------TA---CCTG-------CTCACTTGTATTTA-------------------TTT-AT-C-T--TT-ATTTATATTGTACATGTAGAAGTCTA------------------TATTGT--------TT-CATTTG--TAT-TCT--ATA----TT-TC-T--C--ATTTG--------ATT---TAAA------T----AACTGTTG-ATATGTATTC-AT-ATTGTATAATAG-T-T-A--ATAATATTCTATgagttaagtgccaatat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATTATATATCAACCTACATTTTGATTACAAGTTATCCATACTTTTATAATAAAAAAATATGTAATTTCCATTTGTATGGCATAATTGCATTCTTGGTAATGTTTGTTTACTTTGTTACGAAGGGTTTCATTCGTCCAATTTATGAGACTGCACTTCCTTAATAGCTGCGTATGCTAAGTAAGTAACCACATCTTGCATAATCGACACTATC
Unaligned ( gi|15 ): ATTTATAGAGATGTATTGCATCTCTAACATTAATATTGTAATTTCCTTCACACAGGTCTTAAAAGTAGGTTGTATTCCATATTACTCATTACATATTACATTGAATTCCAACCTAAATTTCTATTTTAAGACCGCTGTATTAGTATTTTATACAATTTTCATTTTTATTGTATACATGTACATGTAATTGCATTCTGGGT
Unaligned ( gi|16 ): GTTCGTATTGTATATTTTGTATGATATTCTATATTTATATATTTATATTGTATCTCTTACATTAGTATTGTAAAATCTCTTCATTTAGGTCGTAAAACAAACATTTGTATTCATTACTGCAGTATTTGCACATCATTTCTATTTTTATTGTATAATTGCATTTTGGGGATGCTTGTTTACTTTGT