lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555 1111 111111111111111111111111111111111111111111111111111111111111111111111111 555555555555555 11 11 11111 4444444444 111 222 22 1111111 1 2222 3333333333 1 1 5555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 6 6 33 0000000000000 2222 777777777777777777777777777777777777777777777777777777777777777777777777 4 8 2 000000000000000 3 55 33 22222 88 3 3 3333333333 2 222 0 333 777 77 0 55 4444444 3 3 4 1 99 3 6 8888 2 2 88 6 0000000000 0 5 8 6 2 3333333333333333333333333333333333333333333333333333333333333333333333333 6 1 4
lowQualScore : . . .. ............. .... ........................................................................ . . . ............... . .. .. ..... .. . . .......... . ... . ... ... .. . .. ....... . . . . .. . . .... . . .. . .......... . . . . . ......................................................................... . . .
lowQualScore : 0 7 22 4444444444444 1111 777777777777777777777777777777777777777777777777777777777777777777777777 4 9 0 111111111111111 2 66 66 66666 66 6 6 5555555555 2 222 8 333 888 66 9 22 4444444 9 7 0 1 22 5 0 3333 5 2 55 0 8888888888 0 0 8 0 5 7777777777777777777777777777777777777777777777777777777777777777777777777 0 0 0
consensus : AGTGCCTGAAA-TGAGGG-----CC------GGC----CCGAAAA-------A-------NA----T-T-T--TTG----------GG-----C---G---------AG-T--AAAAAA-T-TGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATATTTTT------GA--CGATTTTTTTTATAT-AAAA--AC--A--TAAAAAGAAAA--A-A-A--AC--C--CATAGGT---TTAT---CA---TATTTTA--ATTATCCTT-------TAATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACANTCCTCATCNTCACTATA---A---T--CTG-ATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTG----TATAAAATATATGTATAGATCTAT-----ATATA-A--------------------ATACAT----AATTCTGAAATTAATTGGATCTAACAACCGGTTNTATTTTGCTTTATATTA
Reference ( gi|4 ) : AGTGTCTGAAA-TGGAGG-----CT------GGC----CCGAAAA-------A-------TC----T-T-T--TTG----------GA-----C---G---------AG-T--TAATAA-T-TGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATATTTTT------GA--AGATTTTTTTTATAT-TAAA--AC--A--TAAAAAGAAAA--A-A-A--AC--C--CATAAGT---TTAT---CA---TATTTTATCATTATTCTT-------TAATCAACTTGTCTCGGCCCATTGCCCTGTAT--CAAGGAACTATGGAAGAATCTCT----AATTCCTTGTCTGTATACACTTCTCATTGTCGCTATA---A---T--CTG-ATTCTTCATAGCAAGTATCATTGCACAAGTTAAGATAATTGGTCACACATCAATTGTTGCTCTTTAAT-TATG-ATAGATTCGTTGGGAATATA-A--------------------AGAAAT----AATTTTGAAATTAATTAGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|6 : AGTGCCTGAAA-TTGAGGGCCAGCTTGAGGTGGC----TCGAAAA-------A-------AA----T-AAT--TTG----------GG-----C---A---------AG-T--AAA-AA-TCTAGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCTAATATTTTT------GA--TAATGTTTTT-ATAT-AAAA--AC--ACATAAAAAGAAAA--A-A-A--CA--A--CATAGGT---TT---------------------------T-------TAATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTTATTATA---A---TAATTGGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAA-------TATAAAATATATGTATAGATCTAT-----ATATA-A--------------------ATACAT----AATTCTGAAATTAATTGGATCTAACAACTGGTTATATTTT
gi|5 : AGTGCCTGAAA-TTGAGGGTCAGCTTGAGGAGGC----TCTAAAA-------A-------AA----T-AAT--TTG----------GG-----C---A---------AG-T--AAA-AA-TCTAGAGTCACTGGCCCAAATGGCATGTGCGAAGCCCTAATATTTTT------GA--TAATGTTTTT-ATAT-AAAA--AC--ACATAAAAAGAAAA--A-A-A------C--AACAA------------CA---TAGGTT----------TT-------TAATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTCATTATA---ATAAT--CTG-ATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAA-------TATAAAATATATGTATAGATCTAT-----ATATA-A--------------------ATACAT----AATTCTGAAATTAATTGGATCTAACAACTGGTTATATTT
gi|10 : AGTGCCTGAAACTGAGGG-----CC------AGCTTTTCCGAAAA-------A-------TA----T-T-TGTTTG----------GC-----C---A---------AG-T--AAAAAA-T-TGGAGTCACTGACCCAAATGGCA---TGGAAGCCCAAATATTTGT------GA--TCA--TTTTTTATAT-AAAA--AC--A--TAAAAAGAAAA--A-A-A--
gi|1 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccAATGCCTAAAA-TGAGGG-----CC------AGT----CTGAAAA-------AAAA----TT----A-T-A--TTGTAGGGGAGGGGG-----CAGGG---------AG-T---AAGAA-T-TGGTGTTGCTGGTCCAAATGGCGTGTTGGAAGCCCACATA------------A--AAA-------------TAAA--AC--------------AA--A-A-A--AC--------AGGTTTATTAT---CA---TATTTTA--ATTATCCTTTACCCAGTAATCAACTTCTCTCGGTTCATTGCCCTATAtcaaagcataattcttaattaacaaccagttttattttgcttt
gi|13 : tgtaacctgctccattaaagttgtactatatctgtagctgtttcctcagagttcatttattttaataattgcatatgggaatggttttaattatgcaatattgaattaaatatgatatattttgaagaagcatgtaatgtaattgttaataagttttgtattttttgaagtgatactggtgcaattgttgctattttcaattccatactgtgtcagtcgtgttttgacagctctttgtttgtaaacaaataatgcaaacagtaaattacatgtataatatgataagtaatgtcggcctaacatacatgcggaggttttctgcataactaatgtctgtctaacaaattattagtcaacgagcAGTGCCTGAAA-TATAGG-----CT------AGC----TCGAAAA-------AAAAAAAGTTGGGGT-G-T--GTG----------GA-----T---GGGGGTGAGAAG-TGGTGGTAA-T-TGGAGTCACTGGTTCAAATGGCATGCTGGAA-CCCAAATATTTTT------G---TCATTTGTTTTATAT-AAAA--ACAAA--TAAAAAaacacccacatcatcattcaagacattttcattggtta
gi|2 : GTGCCTAAAA-TGAGGG-----CA------AGC----CCGAAAATGTTTTTA-------TA----TAT-T--TTG----------GAGGGGGC---G---------GG-GAGTAAAAA-T-TGGAATCGCTGCTCCAAATG
gi|3 : tgtcaaccgggtccgttaaagttgcactatatctgtaaatctttccttagaaatcatttattttaataattacatatgggaatagttttaatgcaatatggaattaaatacatattctgaagaagcatgtaatgtaattgtttataagatttgtatttttgaagtgatactggtggaattgttgcttttttttcaattctatactgcgtcagtcgtgtttagacagctctttgtttgtaaacaaatcatgcaaacagtagattacatgtggaggctttctgcataattaatttcggcctaacatacatgcggagtttttctgcataaccaattaatgtctgcctaacaaatgattagtcaacgagctG-----CT------GGC----CCGAAAA-------G-------AA----G-T-T--TTG----------GG-----C---A---------TG-T--AAAAAA-T-TGGAGTCACTAGCCCAAATGGCATGTTGGAAGCCGAAATGTTTTT------GA--CAATTTTTTTTATATATAAAC-AC--A--TAAAAAGAAAA--A-A-ACAAC--AA-TATAGGT---TTATTATCA---TATTTTATCATTATTCTT-------TAATCAACTTGTGTCAGCACATTGCAGTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCACCGTCACTATA---A---T--CAA-ATTCTTCATAGCAATAATCATCGCACAAGTTAAAATAATTGGT-ACACATCAGTTGTCACCCTTTTAT-TATG-GTAGATTCATTAGGAATATATATGTATATATATATATATTATATAAATACAGAATCCTGAAATTAATTAGATCTAACAACCAGTTTTATTTTGCTTTATATTA
gi|7 : gcttta--TTGA---------GG-----C---G---------AG-T--AAAAGA-T-TTGAGTCACTGGCCCAAATGGCAAGTTGGAAGCCTAATTTTTTTTTTTCTTG-------TTTTTTTATAT-AAAA--AC--A--TAAAAAGAAAA--A-A-A--AA--CA-CACAAGT---TTATTATCA---TATTTGATAACTATTCTT-------TAATCATCTTGTCTTTGCACATTGCCCTGTAT--CAAGGGACTAAAGAAGAATCTCT------TACTTTGTCTGTATACACTTCTCATCGTCACTATAATTA---T--CTG-ATTCTTCATAGCAACTATCATAGCACAAGTTAAAATAATTGGTCACACATCAATTG
gi|8 : aaaTG----------GG-----G---G---------AGGT--TAAAAAAT-TGGAGTCACTGGCCTAAATGG--------AAGACCAAATATTTTT------TACCAG----TTTTTATAT-AAAAATAC--A--CAAAAATAAAAC-A-A-A--AA--C--AATAGGT---TTAT---TATCCTATTTTA--ATTATCATG-------TAATT-ACTTCTCTCAGTAGATTGCCCTGTA
gi|9 : tggggagCTGGCCCAAGTGGCATGTTGGAGGCCTAGATATATTT------TATCAGTTTTTTTTT--------------------AAAATAAAA--A-A-A---------CATATTTA--TTAT---CA---TATTTTA--ATTATCCTT-------TAATCCATTTCTTTCGGTACATTGCCCTGTAaatacccggattgtcacttaagacattttcatcagttttcatttgatttgaaccaatcactgtgttcatcataactgtatggctgaaagttagagtt
gi|16 : atgagTGGAAGCTCAAATATTTTT------GA--CGA---TTTTTATAT-AAAAACAC--A--TAAAAAGGAAA--A-A-A--AC--aacacctgtattgtcactcaagatattttcattggttacaatcacaaatttgaacaaattgcaatgttcattataaaccgtattgctgagttgtctcccattgaaaatatagta
gi|11 : AAC--AC--A--TAAAAATAAAACAATA-A--ACAACAACGTAAGT---TTGT---TA---TATTTTA--AATACT-TT-------TAATCAACTTGCCTTGGTATATTACCCTGTAagcggattaggc
gi|15 : aAAAATGAAAC--A-ATA--AC------ATAGGT---TTATTGTCA---TATTTTATCATTATTCTT-------TAATCAACTTGTCTCAGCACATTGCATAGAAT--CAAGGGACTATATCAGAATCTCT----AATTCCTaacatccgttcgtcgctcaaaatatttccattggtaacaatcgtggatttgggtcaatcgctgtgtcgtaacaaaccgtattgttgaaagttagagttatcacccgtggaaagtatagta
gi|17 : GTATAGCAAGGAACTATATAAGAAGCTAT----AATTCCTTGACTATA
gi|10 : attctaTAACAACCAGTTTTATTTTGCTTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TAACTGTTGATAATTTTTGTATTTTTTGAAGTGATACTGGTGGAATTGTTGCTATTTTCAATTTCATAATGCGTCAATCGTGTTTTAACAGTGCTGCATTTTGACAGATTTTTGTTTGTAAACAAATAATGCAGACAAAAGATCACACGTGAAGGCCTATCTGCATAATTAATGTCCGCCTAACAAATTACTGGTCAACGA
Unaligned ( gi|14 ): TTTGACAGTCTCTTCTGGACAGACCTTTGTTTATTTATAATTAATGGAGGGGATAGATTGCACATAGGCATCTGCAAAGTAAAGATCTGCCAAACAAATCATTGGTCAACG
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 1 4444444444 1111 4444444444444444444444444444 11111 111111111 222222222222 11 333333333333 222 11 1111111 2222 111 222 1111111111111111111111111111111111 11 44444444444
lowQualScore : 5 1 3333333333 0000 5555555555555555555555555555 00000 99 55 55 55 666666666 0 666 3 777777777777 3 77 44 77 3 444444444444 3 2 555 666 55 55 55 22 3333333 1 2 77 4444 1 1 444 555 8 1111111111111111111111111111111111 3 33 3 0 11111111111 1
lowQualScore : . . .......... .... ............................ ..... .. .. .. .. ......... . ... . ............ . .. .. .. . ............ . . ... ... .. .. .. .. ....... . . .. .... . . ... ... . .................................. . .. . . ........... .
lowQualScore : 7 4 8888888888 6666 6666666666666666666666666666 00000 55 55 55 55 000000000 9 444 6 111111111111 3 11 66 99 3 888888888888 6 1 555 444 00 00 00 11 0000000 0 3 99 3333 0 0 000 000 0 2222222222222222222222222222222222 2 88 2 2 00000000000 0
consensus : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGA-TTTTTTTATATA-AAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTT-------TAATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACT---ATAAT-A-CT-GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----------ATAAA----------ATAT--ATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTNTATTTTGCTTTATATTA
Reference ( family-2924 ) : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------ANA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGATTTTTTTTATATA-AAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTT-------TAATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACANTCCTCATCNTCACT---ATAAT---CT-GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGT---------------ATAAA----------ATAT--ATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTNTATTTTGCTTTATATTA
gi|1 : AATGCCTAAAA-T-GAGGGCC----------AGT----CTGAAAA-------AAA-----A-T------TATATT-----GTAG--GGGAG--GG--GGCA---------G--GGAGTAA---G---AATTGG--TGTTGCTGGTCCAAATGGCGT-GTTG------GAAG------CCCACATA-AAA--A----TAAAAC---AA--A-A--A--AC--------AGGT-TTATTATCA---TA--TTT--TA--ATTATCCTTTACCCAGTAATCAACTTCTCTCGGTTCATTGCCCTATA
gi|10 : tgtaacctgctccattaaagttgtactatatctgtagctgtttcctcagagttcatttattttaataattgcatatgggaatggttttaattatgcaatattgaattaaatatgatatattttgaagaagcatgtaatgtaattgttaataagttttgtattttttgaagtgatactggtgcaattgttgctattttcaattccatactgtgtcagtcgtgttttgacagctctttgtttgtaaacaaataatgcaaacagtaaattacatgtataatatgataagtaatgtcggcctaacatacatgcggaggttttctgcataactaatgtctgtctaacaaattattagtcaacgagcAGTGCCTGAAACT-GAGGGCC----------AGCTTTTCCGAAAA-------ATA-----T-T------TGT-TT-----G--G--CCAAG--TA--AAAA---------ATTGGAGTCACTGACCCAAATGGCA---TGGAAGCCCAAATA---T-TTGT------GATCA--TTTTTTATATA-AAA--AC--ATAAAAAGAAAA--A-A--A------T--CAAAG----------CA---TAATTCT--TA--ATTAaacacccacatcatcattcaagacattttcattggtta
gi|11 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccA-AAC--AC--ATAAAAATAAAACAATA--A--ACAACAACGTAAGT-TTGT---TA---TA--TTT--TA--AATA-CTTT-------TAATCAACTTGCCTTGGTATATTACCCTGTAacaaccagttttattttgcttt
gi|13 : AGTGCCTGAAA-T-ATAGGCT----------AGC----TCGAAAA-------AAAAAAAGT-TGGGGTGT---GT-----G--GATGGGGG--TG--AGAAGTGGTGGTAATTGGAGTCACTGGTTCAAATGGCATGCTGGAA-CCCAAATA---T-TTTT------GTC-ATTTGTTTTATATA-AAA--ACAAATAAAAAaacatccgttcgtcgctcaaaatatttccattggtaacaatcgtggatttgggtcaatcgctgtgtcgtaacaaaccgtattgttgaaagttagagttatcacccgtggaaagtatagta
gi|15 : AAAATGAAAC--A-AT-A--AC------ATAGGT-TTATTGTCA---TA--TTT--TATCATTATTCTT-------TAATCAACTTGTCTCAGCACATTGCATAGAAT--CAAGGGACTATATCAGAATCTCT----AATTCCT
gi|16 : TGGAAGCTCAAATA---T-TTTT------GACGA---TTTTTATATA-AAAACAC--ATAAAAAGGAAA--A-A--A--AC--
gi|17 : GTATAGCAAGGAACTATATAAGAAGCTAT----AATTCCTTGACTATAagcggattaggc
gi|2 : attctaGTGCCTAAAA-T-GAGGGCA----------AGC----CCGAAAATGTTTTTATA-----TAT------T---TTGGAGGG--G--GCGGG--GAGTAAAA---------ATTGGAATCGCTGCTCCAAATG
gi|3 : tgtcaaccgggtccgttaaagttgcactatatctgtaaatctttccttagaaatcatttattttaataattacatatgggaatagttttaatgcaatatggaattaaatacatattctgaagaagcatgtaatgtaattgtttataagatttgtatttttgaagtgatactggtggaattgttgcttttttttcaattctatactgcgtcagtcgtgtttagacagctctttgtttgtaaacaaatcatgcaaacagtagattacatgtggaggctttctgcataattaatttcggcctaacatacatgcggagtttttctgcataaccaattaatgtctgcctaacaaatgattagtcaacgagctGCT----------GGC----CCGAAAA-------GAA-----G-T------T---TT-----G--G--GCATG--TA--AAAA---------ATTGGAGTCACTAGCCCAAATGGCATGTTGGAAGCCGAAATG---T-TTTT------GACAATTTTTTTTATATATAAAC-AC--ATAAAAAGAAAA--A-A--ACAAC--AA-TATAGGT-TTATTATCA---TA--TTT--TATCATTATTCTT-------TAATCAACTTGTGTCAGCACATTGCAGTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCACCGTCACT---ATAAT---CA-AATTCTTCATAGCAATAATCATCGCACAAGTTAAAATAATTGGT-ACACATCAGTTGTCACCCTTTTATTATGGTAGATTCATTAGGAATATATATGTATATATATATATATT-----ATATAAATACAGAATCCTGAAATTAATTAGATCTAACAACCAGTTTTATTTTGCTTTATATTA
gi|4 : gctttaAGTGTCTGAAA-T-GGAGGCT----------GGC----CCGAAAA-------ATC-----T-T------T---TT-----G--G--ACGAG--TT--AATA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GAAGATTTTTTTTATATT-AAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAAGT-TTAT---CA---TA--TTT--TATCATTATTCTT-------TAATCAACTTGTCTCGGCCCATTGCCCTGTAT--CAAGGAACTATGGAAGAATCTCT----AATTCCTTGTCTGTATACACTTCTCATTGTCGCT---ATAAT---CT-GATTCTTCATAGCAAGTATCATTGCACAAGTTAAGATAATTGGTCACACATCAATTGTTGCT-----------CTTTA----------AT-T--ATG-ATAGATTCG-----TTGGGAATATAAAGAAATAATTTTGAAATTAATTAGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|5 : AGTGCCTGAAA-TTGAGGGTCAGCTTGAGGAGGC----TCTAAAA-------AAA-----T-AA-----T---TT-----G--G--GCAAG--TA--AAAA---------TCTAGAGTCACTGGCCCAAATGGCATGTGCGAAGCCCTAATA---T-TTTT------GATAA-TGTTTTTATATA-AAAACAC--ATAAAAAGAAAA--A-AACA--ACA-A--CATAGGT-T-------------------------------TT-------TAATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTCATTATAATAAT---CT-GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAA---T---------------ATAAA----------ATAT--ATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTT
gi|6 : AGTGCCTGAAA-TTGAGGGCCAGCTTGAGGTGGC----TCGAAAA-------AAA-----T-AA-----T---TT-----G--G--GCAAG--TA--AAAA---------TCTAGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCTAATA---T-TTTT------GATAA-TGTTTTTATATA-AAAACAC--ATAAAAAGAAAA--A-A--A--CA--A--CATAGGT-T-------------------------------TT-------TAATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTTATT---ATAATAA-TTGGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAA---T---------------ATAAA----------ATAT--ATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTTT
gi|7 : ---TT-----GA-G--GCGAG--TA--AAAG---------ATTTGAGTCACTGGCCCAAATGGCAAGTTGGAAGCCTAATTT---T-TTTTTTTCTTG-----TTTTTTTATATA-AAA--AC--ATAAAAAGAAAA--A-A--A--AA--CA-CACAAGT-TTATTATCA---TA--TTTGATA--ACTATTCTT-------TAATCATCTTGTCTTTGCACATTGCCCTGTAT--CAAGGGACTAAAGAAGAATCTCT----TA--CTTTGTCTGTATACACTTCTCATCGTCACT---ATAATTATCT-GATTCTTCATAGCAACTATCATAGCACAAGTTAAAATAATTGGTCACACATCAATTG
gi|8 : aaaT-----G--G--GGGAGGTTA--AAAA---------ATTGGAGTCACTGGCCTAAATGG--------AAGACCAAATA---T-TTTT------TACCAGTTTTTATATAAA-AAT--AC--ACAAAAATAAAAC-A-A--A--AA--C--AATAGGT-TTAT---TATCCTA--TTT--TA--ATTATCATG-------TAATT-ACTTCTCTCAGTAGATTGCCCTGTA
gi|9 : tggggagCTGGCCCAAGTGGCATGTTGGAGGCCTAGATA---TATTTT------ATCAGTTTTTTTT---TA-AAA-------TAAAAAAA--------------------CATATTTATTAT---CA---TA--TTT--TA--ATTATCCTT-------TAATCCATTTCTTTCGGTACATTGCCCTGTAaatacccggattgtcacttaagacattttcatcagttttcatttgatttgaaccaatcactgtgttcatcataactgtatggctgaaagttagagtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAACTGTTGATAATTTTTGTATTTTTTGAAGTGATACTGGTGGAATTGTTGCTATTTTCAATTTCATAATGCGTCAATCGTGTTTTAACAGTGCTGCATTTTGACAGATTTTTGTTTGTAAACAAATAATGCAGACAAAAGATCACACGTGAAGGCCTATCTGCATAATTAATGTCCGCCTAACAAATTACTGGTCAACGA
Unaligned ( gi|14 ): TTTGACAGTCTCTTCTGGACAGACCTTTGTTTATTTATAATTAATGGAGGGGATAGATTGCACATAGGCATCTGCAAAGTAAAGATCTGCCAAACAAATCATTGGTCAACG
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 1 4444444444 1111 4444444444444444444444444444 11111 111111111 111111111111 111 11 333333333 222 11 1111111 2222 3333333 22222222222222222222222222222222 44444444444
lowQualScore : 5 1 3333333333 0000 5555555555555555555555555555 00000 99 55 55 55 666666666 0 666 3 333333333333 3 000 33 44 0 77 3 77 666666666 3 2 555 666 55 55 55 22 3333333 1 2 77 4444 8 1111111 22222222222222222222222222222222 3 3 0 11111111111 6 1
lowQualScore : . . .......... .... ............................ ..... .. .. .. .. ......... . ... . ............ . ... .. .. . .. . .. ......... . . ... ... .. .. .. .. ....... . . .. .... . ....... ................................ . . . ........... . .
lowQualScore : 7 4 8888888888 6666 4444444444444444444444444444 00000 55 55 55 55 000000000 9 444 6 888888888888 6 000 88 66 4 99 3 99 000000000 6 1 555 444 00 00 00 11 0000000 0 3 99 3333 0 8888888 33333333333333333333333333333333 2 2 2 00000000000 4 0
consensus : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGATTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAA-TA--CT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
Reference ( family-2924 ) : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGATTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAA-TA--CT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTNTATTTTGCTTTATATTA
gi|1 : AATGCCTAAAA-T-GAGGGCC----------AGT----CTGAAAA-------AAA-----A-T------TATATT-----GTAG--GGGAG--GG--GGCA---------G--GGAGTAA---G---AATTGG--TGTTGCTGGTCCAAATGGCGT-GTTG------GAAG------CCC---ACATAAAA--A----TAAAAC---AA--A-A--A--AC--------AGGT-TTATTATCA---TA--TTT--TA--ATTATCCTTTACCCAGTAATCAACTTCTCTCGGTTCATTGCCCTATA
gi|10 : tgtaacctgctccattaaagttgtactatatctgtagctgtttcctcagagttcatttattttaataattgcatatgggaatggttttaattatgcaatattgaattaaatatgatatattttgaagaagcatgtaatgtaattgttaataagttttgtattttttgaagtgatactggtgcaattgttgctattttcaattccatactgtgtcagtcgtgttttgacagctctttgtttgtaaacaaataatgcaaacagtaaattacatgtataatatgataagtaatgtcggcctaacatacatgcggaggttttctgcataactaatgtctgtctaacaaattattagtcaacgagcAGTGCCTGAAACT-GAGGGCC----------AGCTTTTCCGAAAA-------ATA-----T-T------TGT-TT-----G--G--CCAAG--TA--AAAA---------ATTGGAGTCACTGACCCAAATGGCA---TGGAAGCCCAAATA---T-TTGT------GATCA-TT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A------T--CAAAG----------CA---TAATTCT--TA--ATTAaacacccacatcatcattcaagacattttcattggtta
gi|10 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccCATAATTCT-----TAATT------AACAACCAGTTTTATTTTGCTTTacaaccagttttattttgcttt
gi|11 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccagtgcctgaaactgagggccagcttttccgaaaaatatttgtttggccaagtaaaaaattggagtcactgacccaaatggcatggaagcccaaatatttgtgatcattttttatataaaaacataaaaagaaaaaaatcaaagAAAC--AC--ATAAAAATAAAACAATA--A--ACAACAACGTAAGT-TTGT---TA---TA--TTT--TA--AATA-CTTTTA-------ATCAACTTGCCTTGGTATATTACCCTGTA
gi|13 : AGTGCCTGAAA-T-ATAGGCT----------AGC----TCGAAAA-------AAAAAAAGT-TGGGGTGT---GT-----G--GATGGGGG--TG--AGAAGTGGTGGTAATTGGAGTCACTGGTTCAAATGGCATGCTGGAA-CCCAAATA---T-TTTT------GTC-ATTTGTTTT---ATATAAAA--ACAAATAAAAAaacatccgttcgtcgctcaaaatatttccattggtaacaatcgtggatttgggtcaatcgctgtgtcgtaacaaaccgtattgttgaaagttagagttatcacccgtggaaagtatagta
gi|15 : AAAATGAAAC--A-AT-A--AC------ATAGGT-TTATTGTCA---TA--TTT--TATCATTATTCTTTA-------ATCAACTTGTCTCAGCACATTGCATAGAAT--CAAGGGACTATATCAGAATCTCT----AATTCCT
gi|16 : TGGAAGCTCAAATA---T-TTTT------GACGATTT-TTAT---ATAAAAAC--AC--ATAAAAAGGAAA--A-A--A--AC--
gi|17 : GTATAGCAAGGAACTATATAAGAAGCTAT----AATTCCTTGACTATAagcggattaggc
gi|2 : attctaGTGCCTAAAA-T-GAGGGCA----------AGC----CCGAAAATGTTTTTATA-----TAT------T---TTGGAGGG--G--GCGGG--GAGTAAAA---------ATTGGAATCGCTGCTCCAAATG
gi|3 : tgtcaaccgggtccgttaaagttgcactatatctgtaaatctttccttagaaatcatttattttaataattacatatgggaatagttttaatgcaatatggaattaaatacatattctgaagaagcatgtaatgtaattgtttataagatttgtatttttgaagtgatactggtggaattgttgcttttttttcaattctatactgcgtcagtcgtgtttagacagctctttgtttgtaaacaaatcatgcaaacagtagattacatgtggaggctttctgcataattaatttcggcctaacatacatgcggagtttttctgcataaccaattaatgtctgcctaacaaatgattagtcaacgagctGCT----------GGC----CCGAAAA-------GAA-----G-T------T---TT-----G--G--GCATG--TA--AAAA---------ATTGGAGTCACTAGCCCAAATGGCATGTTGGAAGCCGAAATG---T-TTTT------GACAATTT-TTTTTATATATAAAC--AC--ATAAAAAGAAAA--A-A--ACAAC--AA-TATAGGT-TTATTATCA---TA--TTT--TATCATTATTCTTTA-------ATCAACTTGTGTCAGCACATTGCAGTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCACCGTCACTATAA-T---CA--AATTCTTCATAGCAATAATCATCGCACAAGTTAAAATAATTGGT-ACACATCAGTTGTCACCCTTTTATTATGGTAGATTCATTAGGAATATATATGTATATATATATATATT-----ATATAAATACAGAATCCTGAAATTAATTAGATCTAACAACCAGTTTTATTTTGCTTTATATTA
gi|4 : gctttaAGTGTCTGAAA-T-GGAGGCT----------GGC----CCGAAAA-------ATC-----T-T------T---TT-----G--G--ACGAG--TT--AATA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GAAGATTT-TTTTT--ATATTAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAAGT-TTAT---CA---TA--TTT--TATCATTATTCTTTA-------ATCAACTTGTCTCGGCCCATTGCCCTGTAT--CAAGGAACTATGGAAGAATCTCT----AATTCCTTGTCTGTATACACTTCTCATTGTCGCTATAA-T---CT--GATTCTTCATAGCAAGTATCATTGCACAAGTTAAGATAATTGGTCACACATCAATTGTTGCT-----CT------------------TTAAT-TATG-ATAGATTCG-----TTGGGAATATAAAGAAATAATTTTGAAATTAATTAGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|5 : AGTGCCTGAAA-TTGAGGGTCAGCTTGAGGAGGC----TCTAAAA-------AAA-----T-AA-----T---TT-----G--G--GCAAG--TA--AAAA---------TCTAGAGTCACTGGCCCAAATGGCATGTGCGAAGCCCTAATA---T-TTTT------GATAATGT-TTTT---ATATAAAAACAC--ATAAAAAGAAAA--A-AACA--ACA-A--CATAGGT-T-------------------------------TTTA-------ATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTCATTATAA-TAATCT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAAT------------AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTT
gi|6 : AGTGCCTGAAA-TTGAGGGCCAGCTTGAGGTGGC----TCGAAAA-------AAA-----T-AA-----T---TT-----G--G--GCAAG--TA--AAAA---------TCTAGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCTAATA---T-TTTT------GATAATGT-TTTT---ATATAAAAACAC--ATAAAAAGAAAA--A-A--A--CA--A--CATAGGT-T-------------------------------TTTA-------ATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTTATTATAA-TA--ATTGGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAAT------------AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTTT
gi|7 : ---TT-----GA-G--GCGAG--TA--AAAG---------ATTTGAGTCACTGGCCCAAATGGCAAGTTGGAAGCCTAATTT---T-TTTTTTTCTTG----TTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AA--CA-CACAAGT-TTATTATCA---TA--TTTGATA--ACTATTCTTTA-------ATCATCTTGTCTTTGCACATTGCCCTGTAT--CAAGGGACTAAAGAAGAATCTCT------TACTTTGTCTGTATACACTTCTCATCGTCACTATAATTAT-CT--GATTCTTCATAGCAACTATCATAGCACAAGTTAAAATAATTGGTCACACATCAATTG
gi|8 : aaaT-----G--G--GGGAGGTTA--AAAA---------ATTGGAGTCACTGGCCTAAA--------TGGAAGACCAAATA---T-TTTT------TACCA-GT-TTTT---ATATAAAAATAC--ACAAAAATAAAAC-A-A--A--AA--C--AATAGGT-TTAT---TATCCTA--TTT--TA--ATTATCATGTA-------ATT-ACTTCTCTCAGTAGATTGCCCTGTA
gi|9 : tggggagCTGGCCCAAGTGGCATGTTGGAGGCCTAGATA---TATTTT------ATCAGTTT-TTTT---TTA---------------AAATAAAA--A-A--A---------CATATTTATTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCCATTTCTTTCGGTACATTGCCCTGTAaatacccggattgtcacttaagacattttcatcagttttcatttgatttgaaccaatcactgtgttcatcataactgtatggctgaaagttagagtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAACTGTTGATAATTTTTGTATTTTTTGAAGTGATACTGGTGGAATTGTTGCTATTTTCAATTTCATAATGCGTCAATCGTGTTTTAACAGTGCTGCATTTTGACAGATTTTTGTTTGTAAACAAATAATGCAGACAAAAGATCACACGTGAAGGCCTATCTGCATAATTAATGTCCGCCTAACAAATTACTGGTCAACGA
Unaligned ( gi|14 ): TTTGACAGTCTCTTCTGGACAGACCTTTGTTTATTTATAATTAATGGAGGGGATAGATTGCACATAGGCATCTGCAAAGTAAAGATCTGCCAAACAAATCATTGGTCAACG
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 1 4444444444 1111 4444444444444444444444444444 11111 111111111 111111111111 111 11 333333333 222 11 1111111 2222 3333333 22222222222222222222222222222222 44444444444
lowQualScore : 5 1 3333333333 0000 5555555555555555555555555555 00000 99 55 55 55 666666666 0 666 3 333333333333 3 000 33 44 0 77 3 77 666666666 3 2 555 666 55 55 55 22 3333333 1 2 77 4444 8 1111111 22222222222222222222222222222222 3 3 0 11111111111 6 1
lowQualScore : . . .......... .... ............................ ..... .. .. .. .. ......... . ... . ............ . ... .. .. . .. . .. ......... . . ... ... .. .. .. .. ....... . . .. .... . ....... ................................ . . . ........... . .
lowQualScore : 7 4 8888888888 6666 4444444444444444444444444444 00000 55 55 55 55 000000000 9 444 6 888888888888 6 000 88 66 4 99 3 99 000000000 6 1 555 444 00 00 00 11 0000000 0 3 99 3333 0 8888888 33333333333333333333333333333333 2 2 2 00000000000 4 4
consensus : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGATTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAA-TA--CT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
Reference ( family-2924 ) : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGATTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAA-TA--CT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|1 : AATGCCTAAAA-T-GAGGGCC----------AGT----CTGAAAA-------AAA-----A-T------TATATT-----GTAG--GGGAG--GG--GGCA---------G--GGAGTAA---G---AATTGG--TGTTGCTGGTCCAAATGGCGT-GTTG------GAAG------CCC---ACATAAAA--A----TAAAAC---AA--A-A--A--AC--------AGGT-TTATTATCA---TA--TTT--TA--ATTATCCTTTACCCAGTAATCAACTTCTCTCGGTTCATTGCCCTATA
gi|10 : tgtaacctgctccattaaagttgtactatatctgtagctgtttcctcagagttcatttattttaataattgcatatgggaatggttttaattatgcaatattgaattaaatatgatatattttgaagaagcatgtaatgtaattgttaataagttttgtattttttgaagtgatactggtgcaattgttgctattttcaattccatactgtgtcagtcgtgttttgacagctctttgtttgtaaacaaataatgcaaacagtaaattacatgtataatatgataagtaatgtcggcctaacatacatgcggaggttttctgcataactaatgtctgtctaacaaattattagtcaacgagcAGTGCCTGAAACT-GAGGGCC----------AGCTTTTCCGAAAA-------ATA-----T-T------TGT-TT-----G--G--CCAAG--TA--AAAA---------ATTGGAGTCACTGACCCAAATGGCA---TGGAAGCCCAAATA---T-TTGT------GATCA-TT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A------T--CAAAG----------CA---TAATTCT--TA--ATTAaacacccacatcatcattcaagacattttcattggtta
gi|10 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccCATAATTCT-----TAATT------AACAACCAGTTTTATTTTGCTTTacaaccagttttattttgcttt
gi|11 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccagtgcctgaaactgagggccagcttttccgaaaaatatttgtttggccaagtaaaaaattggagtcactgacccaaatggcatggaagcccaaatatttgtgatcattttttatataaaaacataaaaagaaaaaaatcaaagAAAC--AC--ATAAAAATAAAACAATA--A--ACAACAACGTAAGT-TTGT---TA---TA--TTT--TA--AATA-CTTTTA-------ATCAACTTGCCTTGGTATATTACCCTGTA
gi|13 : AGTGCCTGAAA-T-ATAGGCT----------AGC----TCGAAAA-------AAAAAAAGT-TGGGGTGT---GT-----G--GATGGGGG--TG--AGAAGTGGTGGTAATTGGAGTCACTGGTTCAAATGGCATGCTGGAA-CCCAAATA---T-TTTT------GTC-ATTTGTTTT---ATATAAAA--ACAAATAAAAAaacatccgttcgtcgctcaaaatatttccattggtaacaatcgtggatttgggtcaatcgctgtgtcgtaacaaaccgtattgttgaaagttagagttatcacccgtggaaagtatagta
gi|15 : AAAATGAAAC--A-AT-A--AC------ATAGGT-TTATTGTCA---TA--TTT--TATCATTATTCTTTA-------ATCAACTTGTCTCAGCACATTGCATAGAAT--CAAGGGACTATATCAGAATCTCT----AATTCCT
gi|16 : TGGAAGCTCAAATA---T-TTTT------GACGATTT-TTAT---ATAAAAAC--AC--ATAAAAAGGAAA--A-A--A--AC--
gi|17 : GTATAGCAAGGAACTATATAAGAAGCTAT----AATTCCTTGACTATAagcggattaggc
gi|2 : attctaGTGCCTAAAA-T-GAGGGCA----------AGC----CCGAAAATGTTTTTATA-----TAT------T---TTGGAGGG--G--GCGGG--GAGTAAAA---------ATTGGAATCGCTGCTCCAAATG
gi|3 : tgtcaaccgggtccgttaaagttgcactatatctgtaaatctttccttagaaatcatttattttaataattacatatgggaatagttttaatgcaatatggaattaaatacatattctgaagaagcatgtaatgtaattgtttataagatttgtatttttgaagtgatactggtggaattgttgcttttttttcaattctatactgcgtcagtcgtgtttagacagctctttgtttgtaaacaaatcatgcaaacagtagattacatgtggaggctttctgcataattaatttcggcctaacatacatgcggagtttttctgcataaccaattaatgtctgcctaacaaatgattagtcaacgagctGCT----------GGC----CCGAAAA-------GAA-----G-T------T---TT-----G--G--GCATG--TA--AAAA---------ATTGGAGTCACTAGCCCAAATGGCATGTTGGAAGCCGAAATG---T-TTTT------GACAATTT-TTTTTATATATAAAC--AC--ATAAAAAGAAAA--A-A--ACAAC--AA-TATAGGT-TTATTATCA---TA--TTT--TATCATTATTCTTTA-------ATCAACTTGTGTCAGCACATTGCAGTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCACCGTCACTATAA-T---CA--AATTCTTCATAGCAATAATCATCGCACAAGTTAAAATAATTGGT-ACACATCAGTTGTCACCCTTTTATTATGGTAGATTCATTAGGAATATATATGTATATATATATATATT-----ATATAAATACAGAATCCTGAAATTAATTAGATCTAACAACCAGTTTTATTTTGCTTTATATTA
gi|4 : gctttaAGTGTCTGAAA-T-GGAGGCT----------GGC----CCGAAAA-------ATC-----T-T------T---TT-----G--G--ACGAG--TT--AATA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GAAGATTT-TTTTT--ATATTAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAAGT-TTAT---CA---TA--TTT--TATCATTATTCTTTA-------ATCAACTTGTCTCGGCCCATTGCCCTGTAT--CAAGGAACTATGGAAGAATCTCT----AATTCCTTGTCTGTATACACTTCTCATTGTCGCTATAA-T---CT--GATTCTTCATAGCAAGTATCATTGCACAAGTTAAGATAATTGGTCACACATCAATTGTTGCT-----CT------------------TTAAT-TATG-ATAGATTCG-----TTGGGAATATAAAGAAATAATTTTGAAATTAATTAGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|5 : AGTGCCTGAAA-TTGAGGGTCAGCTTGAGGAGGC----TCTAAAA-------AAA-----T-AA-----T---TT-----G--G--GCAAG--TA--AAAA---------TCTAGAGTCACTGGCCCAAATGGCATGTGCGAAGCCCTAATA---T-TTTT------GATAATGT-TTTT---ATATAAAAACAC--ATAAAAAGAAAA--A-AACA--ACA-A--CATAGGT-T-------------------------------TTTA-------ATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTCATTATAA-TAATCT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAAT------------AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTT
gi|6 : AGTGCCTGAAA-TTGAGGGCCAGCTTGAGGTGGC----TCGAAAA-------AAA-----T-AA-----T---TT-----G--G--GCAAG--TA--AAAA---------TCTAGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCTAATA---T-TTTT------GATAATGT-TTTT---ATATAAAAACAC--ATAAAAAGAAAA--A-A--A--CA--A--CATAGGT-T-------------------------------TTTA-------ATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTTATTATAA-TA--ATTGGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAAT------------AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTTT
gi|7 : ---TT-----GA-G--GCGAG--TA--AAAG---------ATTTGAGTCACTGGCCCAAATGGCAAGTTGGAAGCCTAATTT---T-TTTTTTTCTTG----TTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AA--CA-CACAAGT-TTATTATCA---TA--TTTGATA--ACTATTCTTTA-------ATCATCTTGTCTTTGCACATTGCCCTGTAT--CAAGGGACTAAAGAAGAATCTCT------TACTTTGTCTGTATACACTTCTCATCGTCACTATAATTAT-CT--GATTCTTCATAGCAACTATCATAGCACAAGTTAAAATAATTGGTCACACATCAATTG
gi|8 : aaaT-----G--G--GGGAGGTTA--AAAA---------ATTGGAGTCACTGGCCTAAA--------TGGAAGACCAAATA---T-TTTT------TACCA-GT-TTTT---ATATAAAAATAC--ACAAAAATAAAAC-A-A--A--AA--C--AATAGGT-TTAT---TATCCTA--TTT--TA--ATTATCATGTA-------ATT-ACTTCTCTCAGTAGATTGCCCTGTA
gi|9 : tggggagCTGGCCCAAGTGGCATGTTGGAGGCCTAGATA---TATTTT------ATCAGTTT-TTTT---TTA---------------AAATAAAA--A-A--A---------CATATTTATTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCCATTTCTTTCGGTACATTGCCCTGTAaatacccggattgtcacttaagacattttcatcagttttcatttgatttgaaccaatcactgtgttcatcataactgtatggctgaaagttagagtt
blockSeqs : C T AGCTTGAGGA TTTT AAAAAAAGTTGGGGTGT GGAGG A AT GT GT GTGGTGGTA . A TTTCTTGT G TAT AC AA CA T AC ACAACAA A T TGT TCC AT GA TC TT . G G AG TTAA T AATCT TGTTGCTCT A T TTGGGA A T
blockSeqs : . T AGCTTGAGGT . TGTTTTTATATATT . . . . . . . . GACGAT . T AC . C . T CAACAA . T TAT . . . TC TT . G A . TTAA . AATTG AT A T T A T
blockSeqs : . . . . ATATTTGT . . . . . . . . GACAAT . . AT . . . . ACAA . T TAT . . . TC TT . G A . . . ATCT AT . . T G A
blockSeqs : . . . . AAATAAT . . . . . . . . GAAGAT . . . . . . . AACA . T . . . . . TT . G G . . . CT G A
blockSeqs : . . . . AAATAAT . . . . . . . . GATAAT . . . . . . . ACC . T . . . . . TC . T C . .
blockSeqs : . . . . GAAGTT . . . . . . . . GATAAT . . . . . . . CAA . T . . . . . TC . T C . .
blockSeqs : . . ATCTTT . . . . . . . . ATCAGT . . . . . . . AAC . T . . . . . C . G T
blockSeqs : . . . . . . . . GATCA . . . . . . . AC . . . . . . . . . C A
blockSeqs : . . . . . . . . GTCAT . . . . . . . T . . . . . . . . . C G
blockSeqs : . . TACCA . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ANATAT********************** ** *** GACGAT****** ACAA***** *** ******* ATCT***
originalCons : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA-----T-T------T---TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTT------GACGATTT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--A--AC--C--CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAA-TA--CT--GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
finalCons : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAAANATAT----------------------TT-----G--G--GCGAG--TA--AAAA---------ATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATA---T-TTTTGACGAT------TT-TTTT---ATATAAAA--AC--ATAAAAAGAAAA--A-A--AACAA-----CATAGGT-TTAT---CA---TA--TTT--TA--ATTATCCTTTA-------ATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAA-TATCT---GATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAACTGTTGATAATTTTTGTATTTTTTGAAGTGATACTGGTGGAATTGTTGCTATTTTCAATTTCATAATGCGTCAATCGTGTTTTAACAGTGCTGCATTTTGACAGATTTTTGTTTGTAAACAAATAATGCAGACAAAAGATCACACGTGAAGGCCTATCTGCATAATTAATGTCCGCCTAACAAATTACTGGTCAACGA
Unaligned ( gi|14 ): TTTGACAGTCTCTTCTGGACAGACCTTTGTTTATTTATAATTAATGGAGGGGATAGATTGCACATAGGCATCTGCAAAGTAAAGATCTGCCAAACAAATCATTGGTCAACG
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 1 4444444444 1111 333333333333333333333 111111 22222222222222222 11111111 1111111111111 2222 22222222 11 1111111 2222 333 22222222222222222222222222222222 44444444444
lowQualScore : 5 1 3333333333 0000 333333333333333333333 4 111111 00000000000000000 44444444 0 3 6666666666666 3 555 0000 44 0 44 44 44 44 4 0 99999999 55 66 22 3333333 1 2 77 4444 555 1 22222222222222222222222222222222 3 3 0 11111111111 6 1
lowQualScore : . . .......... .... ..................... . ...... ................. ........ . . ............. . ... .... .. . .. .. .. .. . . ........ .. .. .. ....... . . .. .... ... . ................................ . . . ........... . .
lowQualScore : 7 4 8888888888 6666 222222222222222222222 0 555555 99999999999999999 55555555 9 6 5555555555555 6 888 8888 66 5 66 66 66 66 0 8 00000000 55 55 11 0000000 0 3 99 3333 222 0 33333333333333333333333333333333 2 2 2 00000000000 4 4
consensus : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------AAA----T--A---TT-T------GGGCGAG--T-----------A--AAA--------AATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATAT-TTTT------GACGA-TTT-TTTT---ATATAAAA----AC--ATAAAAAGAAA--AAA--A--ACAA--CATAGGT-TTATT-TCA---TATTT--TA--ATTATCCTT-------TAATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAATAATCTGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
Reference ( family-2924 ) : AGTGCCTGAAA-T-GAGGGCC----------GGC----CCGAAAA-------ANA----T--A---TT-T------GGGCGAG--T-----------A--AAA--------AATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATAT-TTTT------GACGA-TTT-TTTT---ATATAAAA----AC--ATAAAAAGAAA--AAA--A--ACAA--CATAGGT-TTAT---CA---TATTT--TA--ATTATCCTT-------TAATCAACTTNTCTCGGCACATTGCCCTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCATCGTCACTATAAT-ATCTGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAATTGTCGCC-----AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|1 : AATGCCTAAAA-T-GAGGGCC----------AGT----CTGAAAA-------AAAATTAT--A---TTGT------AGGGGAG--G-----------G--GGC--------AG--GGAGTAA---G---AATTGG--TGTTGCTGGTCCAAAT-------------GGCG---------T---GT-TGGAAGCCCAC--ATAAAAATAAA--ACA--A--AAAA--CA--GGT-TTATTATCA---TATTT--TA--ATTATCCTTTACCCAGTAATCAACTTCTCTCGGTTCATTGCCCTATA
gi|10 : tgtaacctgctccattaaagttgtactatatctgtagctgtttcctcagagttcatttattttaataattgcatatgggaatggttttaattatgcaatattgaattaaatatgatatattttgaagaagcatgtaatgtaattgttaataagttttgtattttttgaagtgatactggtgcaattgttgctattttcaattccatactgtgtcagtcgtgttttgacagctctttgtttgtaaacaaataatgcaaacagtaaattacatgtataatatgataagtaatgtcggcctaacatacatgcggaggttttctgcataactaatgtctgtctaacaaattattagtcaacgagcAGTGCCTGAAACT-GAGGGCC----------AGCTTTTCCGAAAA-------ATA----TTTG---TT-T------GGCCAAG--T-----------A--AAA--------AATTGGAGTCACTGACCCAAATGGCA---TGGAAGCCCAAATAT-TTGT------GATCA--TT-TTTT---ATATAAAA----AC--ATAAAAAGAAA--AAA--A--TCAAAGCATAaacacccacatcatcattcaagacattttcattggtta
gi|10 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccCATAATTCT-----TAATT------AACAACCAGTTTTATTTTGCTTTattcttaattaacaaccagttttattttgcttt
gi|11 : tagcatcatggctgaggcattctgggactgcaaatgcttatctactctatttgtccagtgcctgaaactgagggccagcttttccgaaaaatatttgtttggccaagtaaaaaattggagtcactgacccaaatggcatggaagcccaaatatttgtgatcattttttatataaaaacataaaaagaaaaaaatcaaag---ACATAAAA----A----TAAAACAATA--AAC--A--ACAA--CGTAAGT-TTGT---TA---TATTT--TA--AATA-CTTT-------TAATCAACTTGCCTTGGTATATTACCCTGTA
gi|13 : aaacAGTGCCTGAAA-T-ATAGGCT----------AGC----TCGAAAA-------AAA----A--AAAGTT-G------GGGTGTG--TGGATGGGGGTGA--GAAGTGGTGGTAATTGGAGTCACTGGTTCAAATGGCATGCTGGAA-CCCAAATAT-TTTT------GTC-A-TTTGTTTT---ATATAAAA----ACAAATAAAAAaacatccgttcgtcgctcaaaatatttccattggtaacaatcgtggatttgggtcaatcgctgtgtcgtaacaaaccgtattgttgaaagttagagttatcacccgtggaaagtatagta
gi|15 : A--AAC--A--ATAA--CATAGGT-TTATTGTCA---TATTT--TATCATTATTCTT-------TAATCAACTTGTCTCAGCACATTGCATAGAAT--CAAGGGACTATATCAGAATCTCT----AATTCCT
gi|16 : aaaatgTGGAAGCTCAAATAT-TTTT------GACGA-TTT-TTAT---ATAAAAAC----AC--ATAAAAAGGAA--AAA--A--ACAG--C
gi|17 : GTATAGCAAGGAACTATATAAGAAGCTAT----AATTCCTTGACTATAggattaggc
gi|2 : attctaGTGCCTAAAA-T-GAGGGCA----------AGC----CCGAAAATGTTTTTATA----T--A---TT-TTGGAGGGGGCGGG--G-----------AGTAAA--------AATTGGAATCGCTGCTCCAAATG
gi|3 : tgtcaaccgggtccgttaaagttgcactatatctgtaaatctttccttagaaatcatttattttaataattacatatgggaatagttttaatgcaatatggaattaaatacatattctgaagaagcatgtaatgtaattgtttataagatttgtatttttgaagtgatactggtggaattgttgcttttttttcaattctatactgcgtcagtcgtgtttagacagctctttgtttgtaaacaaatcatgcaaacagtagattacatgtggaggctttctgcataattaatttcggcctaacatacatgcggagtttttctgcataaccaattaatgtctgcctaacaaatgattagtcaacgagctGCT----------GGC----CCGAAAA-------GAA----G--T---TT-T------GGGCATG--T-----------A--AAA--------AATTGGAGTCACTAGCCCAAATGGCATGTTGGAAGCCGAAATGT-TTTT------GACAA-TTT-TTTTTATATATAAAC----AC--ATAAAAAGAAA--AAA--ACAACAA--TATAGGT-TTATTATCA---TATTT--TATCATTATTCTT-------TAATCAACTTGTGTCAGCACATTGCAGTGTAT--CAAGGGACTATAGAAGAATCTCT----AATTCCTTGTCTGTATACACTCCTCACCGTCACTATA---ATCAAATTCTTCATAGCAATAATCATCGCACAAGTTAAAATAATTGGT-ACACATCAGTTGTCACCCTTTTATTATGGTAGATTCATTAGGAATATATATGTATATATATATATATT-----ATATAAATACAGAATCCTGAAATTAATTAGATCTAACAACCAGTTTTATTTTGCTTTATATTA
gi|4 : gctttaAGTGTCTGAAA-T-GGAGGCT----------GGC----CCGAAAA-------ATC----T--T---TT-T------GGACGAG--T-----------T--AAT--------AATTGGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCAAATAT-TTTT------GAAGATTTT-TTTT---ATATTAAA----AC--ATAAAAAGAAA--AAA--A--AC-C--CATAAGT-TTAT---CA---TATTT--TATCATTATTCTT-------TAATCAACTTGTCTCGGCCCATTGCCCTGTAT--CAAGGAACTATGGAAGAATCTCT----AATTCCTTGTCTGTATACACTTCTCATTGTCGCTATA---ATCTGATTCTTCATAGCAAGTATCATTGCACAAGTTAAGATAATTGGTCACACATCAATTGTTGCT-----CT------------------TTAAT-TATG-ATAGATTCG-----TTGGGAATATAAAGAAATAATTTTGAAATTAATTAGATCTAACAACCGGTTTTATTTTGCTTTATATTA
gi|5 : AGTGCCTGAAA-TTGAGGGTCAGCTTGAGGAGGC----TCTAAAA-------AAA----T--AA--TT-T------GGGCAAG--T-----------A--AAA--------ATCTAGAGTCACTGGCCCAAATGGCATGTGCGAAGCCCTAATAT-TTTT------GATAA-TGT-TTTT---ATATAAAAAC--AC--ATAAAAAGAAA--AAAACA--ACAA--CATAGGT-T-----------------------------TT-------TAATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTCATTATAATAATCTGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAAT------------AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTT
gi|6 : AGTGCCTGAAA-TTGAGGGCCAGCTTGAGGTGGC----TCGAAAA-------AAA----T--AA--TT-T------GGGCAAG--T-----------A--AAA--------ATCTAGAGTCACTGGCCCAAATGGCATGTTGGAAGCCCTAATAT-TTTT------GATAA-TGT-TTTT---ATATAAAAAC--AC--ATAAAAAG-AA--AAA--A--ACAA--CATAGGT-T-----------------------------TT-------TAATCAACTTTTCTTCGCACATTGCACTGTAT--CAAGGGACTATAGAAGAATCTCCTTAAAATTCCTTGTCTGTATACAATCCTCATCTTTATTATAATAATTGGATTCTTCATAGCAATTATCATCGCACAAGTTAAAATAATTGGTCACACATCAAT------------AT------------------AAAATATATGTATAGATCTA-----T-----ATATAAATACATAATTCTGAAATTAATTGGATCTAACAACTGGTTATATTTT
gi|7 : --A---TT-G------AGGCGAG--T-----------A--AAA--------GATTTGAGTCACTGGCCCAAATGGCAAGTTGGAAGCCTAATTTT-TTTTTTTCTTG-----TTT-TTTT---ATATAAAA----AC--ATAAAAAGAAA--AAA--A--AACA--CACAAGT-TTATTATCA---TATTTGATA--ACTATTCTT-------TAATCATCTTGTCTTTGCACATTGCCCTGTAT--CAAGGGACTAAAGAAGAATCTCT----TA--CTTTGTCTGTATACACTTCTCATCGTCACTATAATTATCTGATTCTTCATAGCAACTATCATAGCACAAGTTAAAATAATTGGTCACACATCAATTG
gi|8 : aa-T------GGGGGAGGTT-----------A--AAA--------AATTGGAGTCACTGGCCTAAA--------TGGAAGACCAAATAT-TTTT------TACCA--GT-TTTT---ATATAAAAAT--AC--ACAAAAATAAAACAAA--A--ACA----ATAGGT-TTAT---TATCCTATTT--TA--ATTATCATG-------TAATT-ACTTCTCTCAGTAGATTGCCCTGTA
gi|9 : tggggagCTGGCCCAAGTGGCATGTTGGAGGCCTAGATATATTTT------ATCAG-TTT-TTTT----T-TAAAA---------TAAAAA----------------AA--CATATTTATTAT---CA---TATTT--TA--ATTATCCTT-------TAATCCATTTCTTTCGGTACATTGCCCTGTAaatacccggattgtcacttaagacattttcatcagttttcatttgatttgaaccaatcactgtgttcatcataactgtatggctgaaagttagagtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAACTGTTGATAATTTTTGTATTTTTTGAAGTGATACTGGTGGAATTGTTGCTATTTTCAATTTCATAATGCGTCAATCGTGTTTTAACAGTGCTGCATTTTGACAGATTTTTGTTTGTAAACAAATAATGCAGACAAAAGATCACACGTGAAGGCCTATCTGCATAATTAATGTCCGCCTAACAAATTACTGGTCAACGA
Unaligned ( gi|14 ): TTTGACAGTCTCTTCTGGACAGACCTTTGTTTATTTATAATTAATGGAGGGGATAGATTGCACATAGGCATCTGCAAAGTAAAGATCTGCCAAACAAATCATTGGTCAACG