lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 222 1 1111 22222222222222222222222 11 111111111111111111 11 555555555555 1 1 11111 3333333 11111 1 1 4444444444444444444444 111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222 11 11 111111 1 111 22222222222 4444 3 22222222222222222222222222222222222222222222222222222222222222222222 3333333 1111111111111111111111111111111111111111111 1
lowQualScore : 9 5 1 555 0 777777 4 44444 22 444 1 666666 1 1 1 1 66666666 3 77777777 4 2 2222 22222222222222222222222 2 99 2 4 888888888888888888 7777 00 2 5 1 444444444444 0 1 1 6 8 4 1 66666 1 2 2222222 66666 0 1 2 8888888888888888888888 000 5 6 777 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9999999 0 33 44 777777 5 5 5 3 111 88888888888 6 0 3 5555 8 8 2 8 8 99999999999999999999999999999999999999999999999999999999999999999999 4444444 3 5 7777777777777777777777777777777777777777777 5
lowQualScore : . . . ... . ...... . ..... .. ... . ...... . . . . ........ . ........ . . .... ....................... . .. . . .................. .... .. . . . ............ . . . . . . . ..... . . ....... ..... . . . ...................... ... . . ... ......................................................................................... ....... . .. .. ...... . . . . ... ........... . . . .... . . . . . .................................................................... ....... . . ........................................... .
lowQualScore : 9 6 5 222 8 333333 0 88888 22 666 7 555555 7 7 9 9 99999999 3 22222222 0 0 2222 00000000000000000000000 1 77 1 2 555555555555555555 5555 00 1 0 4 111111111111 2 1 4 7 0 6 4 66666 4 8 0000000 44444 8 8 7 7777777777777777777777 000 3 7 000 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111 7 00 44 999999 0 7 0 5 777 77777777777 7 3 0 8888 0 0 0 0 2 22222222222222222222222222222222222222222222222222222222222222222222 8888888 2 0 4444444444444444444444444444444444444444444 0
consensus : TTTCTNCTCACGTATTA-G-GCG--CG-TTT-TTT-----T-TCCCCCAACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCGATATACATA--------AGTACAGAAG--------ATTT-C-A----TTTTT-------------TT----TT--A-TGTA-AA-TTT-TCAAAG--ATT--------TATT---GATTCAGAAA-AGATTTTG-T-AGACCGG--TATGTTCAGATGTTAATTTC-AGGACAATTTCT-TTACGAGAGATCGATTATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATAT---G---CA----A-AACA---TGTCAAATAA---ATCGAA-AAGTANCGAAGTGT-----------T----TACT--------A----------TT------GT-NACCGGAAA-----T----AACGTT-T-A--------AAATAG--C---ACAGACTGGTTT-ACAG--TAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCAT-CGTA-AA-TGTAT-TTCATTTACACATATTTCTTTTA-TTGNTACGGTT------------TATTAGTA--GTTTA-TGT-----------TTACAAAATAAA--CCCTATATGATATGTGGTGTTTCAT-----T----A---TGGTTNAAAAATATTNCAAAATACTTTTAAAAACAAAAAA
Reference ( gi|3 ) : TTTATTCTCATGTATTA-G-GTG--TG-CTT-TTT-----T-TCCCCCAACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCGATATACATA--------AGTAGAGAAG--------ATTT-C-A----TTTTT-------------TT----CT--A-TGT--AA-TTT-TCAAAG--ATT--------TATT---GATTCAGAAA-AGATTTTGCT-ACACCAG--TATGTTCTGATATTAATTTC-AGGACAATTTCT-TCATGTGAGCTCAGTTATAGGTGATGATTTACATA-GCAGAGAATGTTGTATTCAAATTCAGTCCTTATACATTATATAT---G---TA----A-AACA---TGTCAAATAA---ATCGAA-AAATAAGAAAGTG------------T----TAC---------A----------TT------GT-GACCAGAAA-----T----AACATT-T-A--------AAATAG--C---ACAGACTTGTTT-AC-G--TAAAGGTGAAAGT-GTATGGACAAATGC---AG---A---A---ATGCA-ATACTGTTAT-AG-CATA-AA-TGT-T-TTTATTCACACATAAATCTTTTA-TTGGTGAGGTT------------TG-TAGTA--GTTTA-TGT-----------TTATAAAATAAA--ATCAATATAATATGTGGTATTTCGT-----T----A---TGATTAAAAAATATTGTAAGAT--TTTTAAAAAAAAAAAATGACTGTGTAC
gi|7 : TTTATCCTCACGTATTATGCGTG--TG-TTT-TTTGGGTTT-TTTTCCAACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CACGATATACATA--------AGTACAGAAG--------ATTT-C-A----TTTTT-------------TT----TT--A-TGTAAAA-TTT-TCAAAG--ATT--------TATC---AATTCAGAAA-AAGTTTTG-T-ACACCGG--TATGTTCAGATATTAATTTC-AGGACAATTTCT-TCATGTGAGTTCGATTATA-GTGATGATTTACCTA-GCGGAGAATGTCTT-TTCAAATTCAGTGCTTATACATTATATATGCAG---TA----A-AACA---TGTCAAATAA---ATCAAA-AAATAAG--AGTGT-----------T----TACTGCTT----A----------TTTATGTCGT-GACTGGAAA-----T----AACATT-T-A--------AAATAGAACAGAACAGACTGGTTT-AC-G--TAAAGGTGAAAGT-GTA
gi|1 : gTTTCTTCTCATGTATAA-A-GCA--CA------TT-----T-TCCCTCAACTTTTAAG-AT------CT-TA-GAGAATG-GATG-CACATTATACACA--------AGTATAGAAGCAAAGGAGATTTTC-AC---TTTTT-------------TT----CCCAA-GGT--AA-TTTGTTAAAG--ATAGACCGAGATACT---GAT--------ATATTTTGG--AGAACTT--TATGTTTGGATGTTATTTTC-AGAACGATTTCT-TTACGAGAGGTTGATTATAGATAATGACTTAC-TATGCGGAAAACCATTTATCTAAATTCATTCCATATTCATTACATAT---G---TAGTC-A-AAGT---TGTTAAATAA---ATC-AA-GAAGAATCATGT-------------T----TACTATTCCACGA----------TT------GT-TACCGGAAA-----T----A---TT-CCA--------AAATAG--C---ACA-ACTGGTT--AC-GATTCA--GTGAAAGT-GTATTGATGAATGTGAAAT---A---A---ATGCA-ATACTGTTGTCAT-CATAGAA-TGTAT-TTTTTTGACACATATTTCTTTTGTTTATTTAGATTATATTTTGTTTATA-TAGT---GTTTG-TGT-----------TTATAAAATAAA--CCC--TATGATATGTGGTTTTCCATATCCAT----AGTTTGATTCAAA-----TCCAAAA------TAAAAACAAAAAA
gi|16 : TTTCTACTCACGTATTA-G-GCG--CG-TTT-TTT-----T-TCC---AACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGTGATATACATA--------AGTACAGAAG--------ATTT-C-A----TTTTT-------------TT----TTTAA-TGTA-AA-TTT-TCctggtatttttttacgattcaagagc
gi|18 : cgTTTCTACTCATGTATTA-G-GCG--CG-TTT-TTT-----T-TCC---AACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-TGCGATATACATA--------AGTATAGAAG--------ATTT-C-AT---TTTTT-------------TT----TT--A-TGT--AA-ATT-T--------TT--------TATT---tatttccgataatttcccatgtatattttaaaa
gi|5 : aTTTCTTTTCATGTTTAA-A-GTGCATA-TTT-TTT-----T-TCC---AACTTTTAAG-AT------CT-T-----------AT-------TACACAAA--------AATACAGA-----------TTT-C-A----CTTTT-------------TTTCCCCT--AAGGT--AA-TTT-TTAAAG--ATT--------GACT---GAGACACAGACATATTTTGG--AGTCTGG--TATGTTCAGATGTTAAT------GACAATATCTATAAAAAGAGATCGATAACAGATGACGACTTATCTA-GTGGAGAACCTTTTATTCAAATTCAGTCTATATTCATTACGTAT---G---CAGTATA-AAT----TATCAAATAA---ATCAAG-AAGTATCGAAGTG------------TTTGCTAA---------A----------TTCC----AT-TA-CAGAAA-----CTTGAAATGTTCT-A--------AAATAG-------CAGAC-TGGTT-ACAG--T-AAGATGGAAAT-G-------AAA------AG---A---A---AGCCAGATACTGTtccgataatttcccatgtatattttaaaa
gi|21 : ccaTTTCTGCTCACGTATTA-G-GTG--CG-TTT-TTT-----T-TCCC--AACTTTTAAG-ATCTAGATCT-TC-GAGAAGG-GATG-CGCGATATACATA--------A-TACAGAAG--------ATTT-C-A----TTTTT-------------TT----TT--A-TGT--AA-ATT-T--------TT--------TATT---agctattttagaggtggtattgtttgaaaca
gi|13 : TTTCTACTCACGTATTA-T-GCA--GG-TTT-TTT-----T---CCCCAACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCTATATACATA--------AGTACAGAAG--------ATTT-C-A----TTTTT-------------TT----TTTAA-TGCA-AA-TTT-TCtccgataatat
gi|19 : gTTTCTACTC-TGTATTA-G-GCG--CA-TTT-TTT-----T-TTTC--AACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCGATATACATA--------AGTACAGAAG--------ATTT-C-AT---TTTTT-------------TT----TT--A-TGT--AA-ATT-T--------TT--------TATT---tatttttgttaatttcccatgtatattttaaaag
gi|12 : TTTCTGCTCACGTATTA-G-TCG--CG-CTT-TTT-----T-TCC---AACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCGATATACATA--------AGTACAGAAG--------TTTT-C-ATTTTTTTTT-------------TT----TT--A-TGTA-AA-TTT-T--------TT--------TATT---tccgataatttcccatgtatattttaaa
gi|14 : gTTTCTACTCACGTATTA----TG--CG-CGT-TTT-----T-TCCCC-AACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGTGATATACATA--------AGTACAGAAG--------ATTT-CAA----TTTTT-------------TT----TTTAA-TGT--AA-ATT-T--------TT--------TATT---tccgataatttcccatgtatattttaaaag
gi|17 : gTTTACTCCC--GTATAA-G-GCG--CA-TTT-TTT-----T-TTC---AACTTTTAAG-AT-------T-TC-GAGAACG-GATG-CGCGATATACATA--------AGTACAGACG--------ATTT-C-A----TTTTT-------------TT----TTTAA-TATA-AA-TTT-TCtccgataatttcccatgtatattttaaaag
gi|11 : gttTTTCTACTCATGTATAA----TG--CA-CTTATTT-----TATTCCTCA--TTTTAAT-AT------CT-TT-G-GAAGG-TATA-CACATTATAAGCA--------AGTACAGAAG--------ATTT-C-T----TTTTT-------------TT----TTCAA-GGT--AA-TTTGTCCAAG--AAA--------GGTT---GATTTAGAGA-TGTTTTTG---AGA--AGTATATGTGCAGATTTTAATTTtatttccgataatttcccatgtatattttaaaa
gi|29 : caTTCTTCTCATATATAA-G-GC---TC-ATA-TAT-----T-TCC-----CTTTTTAG-AT------AT-TG-GAAAAGG-AATG-CGCATTATATACA--------AGT
gi|8 : aATTCTCACGTATTA-G-GCG--TG-TTT-TTT-----T-----CCAAATTTTAAG-AT------CT-TC-GAGAAGG-AATG-CAGGATATACATACAGATATAAGTACAGAT----------TTT-C-A----TTTTTTTTTTTTTTTTTTTT----TT--A-AGT--AATTTT-TCAAAG--ATT--------TATT---AATTCAGAAA-AGATTTTGCT-ACACTGG--TATGTTCAGATATTAATTTC-AAGACAAT
gi|24 : TCTCATGTATTA-G-GCG--CG-ATT-TTT-----T----CCCAACTTCTGAGTAT------GTATT-GAGAAAGTGATGTTGCGACAGACaaatcgaaaaataaggaagtgtttactgattatttacgttgtgaccaaaaataacatttaaaatagcacagactggttaatgtaaaggtgaaagtgtatcgacgaatgcagaataaatgcaaaactgttatcgtcataaactgtt
gi|15 : CTCACGTATTA-T-GCG--CG-TTT-TTT-----T-TCCC--AACTTTTAAG-AT------CT-TC-AATAAGG-GATG-CGCGATATACATA--------AGTACAGAAG--------ATTT-C-T----TTTTT-------------TT----TTTAA-TGTA-AA-TTT-TCgattcggaatgagatttc
gi|31 : ttctgCTCACGTATTA-G-GCA--CG-TTT-TTT-----T-TCC---AACTTTTAAG-AT------CT-TC-GAGAAtatttccgataatttcccatgtatattttaaaaga
gi|25 : ttctaCTCATGTATT----GTG--CA-CAT-TTT-----T-TCCCC-AACTTTAAGG-AT------TT-TCAAAGAAGa
gi|20 : ccatctctaTCAAGTATTA-G-GCG--CGGCTT-TTT-----T-----CCAACTTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCGATATAGATA--------AGTAAAGAAG--------ATTT-C-A----TATTT-------------TT----TT--A-TGTA-AA-TTT-TCatacagactgtgtatagggatcat
gi|9 : TCAAGTATTA-A-GTG--TG-CATATTT-----T-TTTTCAAACTTCTAGG-AT------CT-TC-AAtatttccgataatttcacatgtatattttaaaag
gi|27 : taccatttccatT-----T-TTCCCCAACTTTTAAG-ATA-----CT-CC-GA-AAGA-AATG-CACATTATATGCT--------AGTACTTAAG--------ATTTCC-A----TTTTTA------------TT----Cagattgatcagtctgaacatgtttggagactggtatattttaggacaatttctttatgggagatatgtaatagatcatgatttatctaagggagaacattttattcatattcagtctatattcattatatgtgcattaaaaattaaatgaagtatcga
gi|22 : aCAACTTTTAAG-AT------CT-TG-GAGAAGT-GATG-TGCATTATAAACA--------AGAACAGAAG--------ATTT-T-G----TTTTT-------------GT----TT----TGT-----TTT-TCAAGGTTATT--------TGTTAAAGA-GCAGGCA-AGAT----------CCAGA-TATGTTTTGATaa
gi|23 : tgttAACTTTTAAA-AT------CT-TC-GAGAAGA-GATG-CACGATATATATA--------AATGCAGAAG--------ATTT-C-A----TTTTT-------------TT-----T--A-TGTA-AA-TTT-TCg
gi|28 : tcaTTTAAG-AT------CT-TC-GAGAAGG-GATG-CGCGGTATACATA--------AGTACAGAAG--------ATTT-C-AT---TTTTT-------------TT----TT--A-TGTA-AA-TTT-Ttatttccgattttcccatgtatat
gi|9 : TA--------AGT-GTGCAT--------ATTT--------TTTTTCAAAC--------TT----CT--A-GG----A-TCT-TCAAAG--ATT--------GATC----AGTCTGAAC-ATGTTTGG--------AG---A----CTGGTAT--ATTTT-AGGACAATTTCT-TTATGGGAGATATGTAATAGATCATGATTTATCTA-AGGGAGAACATTTTATTCATATTCAGTCTATATTCATTATATGT---GCATTA----A-AA------ATTAAATGAAGTATCGAtta
gi|6 : taccatttccattcaagtat-AGATTTTTTTGAGAACAG--CTTGTTCAGATGTT--TTTCCAGAACAGTTTCT-TTATCAGAGATTGATTATAGATGATGATTTACG------GAGAACCTTTTATTCAAATCCAGTCCATATTCATTATATAT---G---CA----GTAACAAC-TATCAAACAA---ATCCAAGAAGTATCAATCTT------------T----TAA---------A-----------T------GTAAACTTGAAAGAGGCTAG--AATGTTCT-ATTTTCTATAAATAA--C---GTAGACTGGTTTGAC-G--GAAAGGCGGTTGT-TTATTGGTGAATGT---GG---AATCA---ATGCA-ATACTGTTGTCAT-CATA-AA-TATATATTTATTTACACATATTCCTTTTA-CGGGTATGGTT------------TATTGGT---GTTCA-TTT-----------CTATAAAATAAACTACCTGTCTAG-ATGTAGAATATC-T-----T----A--------AAAAGAAATTG
gi|2 : gTATTTATTATATAT---G---CA----A-TACAAATTGTCAAATAA---ATCGAG-AAGTAGCAAAGTGT-----------T----TACT--------ATTCTTTTCCCTT------GT-AGCCGAAAA-----T-------GTT-C-A--------GAATGG----------------TT-ACAG--T-AAGGTAAAAGTAATATTGACGAATGC---AGAATA---A---ATGCA-ACACTGTTGTCAT-CGTA-AA-TGTAT-TTCATTTAC-------TTTTTTT-TTGTT----TT------------TGTTAATACGGTTTATTGTTTTTGTAAAACTTACAAAATAAA--CTCTATATAATATGTGGTGTTTCAT-----TGTAAA---TGGTTTTAAAATACTaa
gi|8 : AATAA---ATCGAA-AAATAAGGAAGTGTTTACTGATTATT----TAC---------G----------TT------GT-GACCAAAAA-----T----AACATT-T-A--------AAATAG--C---ACAGACTGGTTA-AT-G--TAAAGGTGAAAGT-GTATCGACGAATGC---AGAATA---A---ATGCA-AAACTGTTAT-CGTCATA-AACTGT-T-ttcttctaaacttaaagtagtaagagttactaaataattaaaagcaatgaaaaggacttctcccactatactaaactgtgatctgcttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtcctctatcatttcgcggtattgacgttggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatcgcttctcaataatatttattgatgagttactgtaccaatctactg
gi|4 : attctcacgtattaggcgtgtttttttccaaattttaagatcttcgagaaggaatgcaggatatacatacagatataagtacagattttcattttttttttttttttttttttaagtaatttttcaaagatttattaattcagaaaagattttgctacactggtatgttcagatattaatttcaagac-A--------AAATGT--C----CAGAGTGGTT--ACAG--TAA-GGTAAAAGT-ATATTGACGAATGC---AG---A---ATAAATGCA-ACACTGATGTCAT-CGTA-AA-TGTGT-TTCATTTACATTTT--TTTTTTA-TTAATACGGTT------------TA-T--TA--TTTT--TGTAAAAC------TTACAAAATAAA--CTCTATATGATATGTGGTGTTTCAT-----T----G---T------AAATTGTTTTAAAATACTTTT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTTGCAAAATTTTAGGTACCATTACGGTAACTAATAATTTAAAGCAATCAACACGAGACTTGTCCCGCTAACAATCAATTGTGGCCAGTCATAATTAAATCTGGCTCAAACTCTAACTTAGGTAGGTATTTAAAATCAAACATATGTGCCAAGTGTCAGCTGTCATTTCACGGTATTAAA
Unaligned ( gi|26 ): TACACTGATAATTTAAAGAACATGATTTTTTTTTATGTAAATTTTCTATTTCCGATAATTTCCCATGTATATTTTAAAA
Unaligned ( gi|30 ): GAGATTGATTTATGATTATGATTCAACTACCGAAGAACCTTTTATTCAAAGTCCATAT
Unaligned ( gi|32 ): TTACAATAATTTCCCATGTATATTTTAAAAG
Alignments
lowQualScore : 111111 1111111111111 111 11111111 2222 33333333333333333 111 99999999999999999999999999999999 33333333333333333333333333 2222222 1 111 22222222222 11 222222222 1111 2222 44444 11 444444444444444444444444444444444444
lowQualScore : 1 4444 6666 333 777777 1 1 666666 1 1 1 66666666 77777777 4 1 9999 0000000000000 4444 999 4444 2 2 66 66666666 8888 66 0 4 4 1 1111 666 1 0 0 5 9999 0 0 5 0 66 5 0 44444444444444444 1 2 5 333 55555555555555555555555555555555 66 22222222222222222222222222 0000000 9 55 3 6 5 111 88888888888 0 0 6 6 3 8 44 1 11 666666666 1 7777 88 9999 4 00000 11 6 6 0 333333333333333333333333333333333333 0 2
lowQualScore : . .... .... ... ...... . . ...... . . . ........ ........ . . .... ............. .... ... .... . . .. ........ .... .. . . . . .... ... . . . . .... . . . . .. . . ................. . . . ... ................................ .. .......................... ....... . .. . . . ... ........... . . . . . . .. . .. ......... . .... .. .... . ..... .. . . . .................................... . .
lowQualScore : 0 2222 2222 555 666666 7 7 555555 7 9 9 99999999 22222222 0 9 8888 5555555555555 0000 000 0000 0 0 11 11111111 0000 55 8 4 4 0 1111 777 1 9 1 7 5555 3 4 7 1 00 7 7 66666666666666666 7 2 0 111 33333333333333333333333333333333 77 66666666666666666666666666 0000000 4 44 1 5 0 777 77777777777 3 7 7 7 8 0 22 4 00 666666666 4 0000 88 6666 4 00000 00 0 4 2 555555555555555555555555555555555555 8 5
consensus : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-A-TTTTCAAAG--ATT--------TATT---GATTCAGAAA-A-GATTTTG-N--AGACCGGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A-T--A-AACA---TGTCAAATAAATCGAG-AAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCAATACTGTTGTCATCGTA-AA-TGTAT-TTTATTTACACATATTT--CTTTTATT-------AGTACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAAC--TCTATATGATATGTGGTGTTTCAT---T----ATGGTTTNA---AAATATTTTAAAAT-CTTTTAAAAANAAAAAA
Reference ( family-2833 ) : TTTCTNCTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-A-TTTTCAAAG--ATT--------TATT---GATTCAGAAA-A-GATTTTG-T--AGACCGGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTACGA-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A----A-AACA---TGTCAAATAAATCGAA-AAGTANCGAAGTGTTTAC----T--------A----------TT------GT-NACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACAGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCAATACTGTTGTCATCGTA-AA-TGTAT-TTCATTTACACATATTT--CTTTTATT-------GNTACG----GTTTAT-TAGTAGTTTATGT-----TTACAAAATAAAC--CCTATATGATATGTGGTGTTTCAT---T----ATGGTTNAA---AAATATTNCAAAATACTTTTAAAAACAAAAAA
gi|1 : TTTCTTCTCATGTATAAAGCACA----T----TTT-------CCCTCAACTTTTAAG-AT-CT------TA-GAGAATG-GATG-CACATTATAC--------ACAAGTATAGAAGCAAAGGAGATTTTC-A----CT-------------TTTTTT----CCCAA----GGTAA-T-TTGTTAAAG--ATAGACCGAGATACT---GAT--------A-TATTTTG-G--AGAACTTTATGTTTGGATGTTATTTTC-AGAACGATTTCTTTACGA-GAGGTTGATT-ATAGATAATGACTTA-CTATGCGGAAAACCATTTATCTAAATTCATTCCATATTCATTACATATGT---AGTC-A-AAGT---TGTTAAATAAATCAAG-AAGAATC---ATGTTTAC----TATTCCACGA----------TT------GT-TACCGGAAA-----T---A--TTC-CA--------AAATAG--C---ACA-ACTGG-TT-ACGATTCA-GTGAAAGT-GTATTGATGAATGTGAAAT---A---A---ATGCAATACTGTTGTCATCATAGAA-TGTAT-TTTTTTGACACATATTT--CTTTTGTTTATTTAGATTATATTTTGTTTATATAGT-GTTTGTGT-----TTATAAAATAAAC--CC--TATGATATGTGGTTTTCCATATCC----ATAGTTTGATTCAAA---TCCAAAA------TAAAAACAAAAAA
gi|11 : TTTCTACTCATGTATAATGCACT----T----ATT---TTATTCCTCA--TTTTAAT-AT-CT------TT-G-GAAGG-TATA-CACATTATAA--------GCAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TCA-A----GGTAA-T-TTGTCCAAG--AAA--------GGTT---GATTTAGAGA-T-GTTTTTG----AGAAGTATATGTGCAGATTTTAATTTctggtatttttttacgattcaagagc
gi|12 : caTTTCTGCTCACGTATTAGTCGCG----C----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------TTTT-C-ATTTTTT-------------TTTTTT----T---A----TGTAA-A-TTTT--------TT--------TATT---
gi|13 : gTTTCTACTCACGTATTATGCAGG----T----TTT---TTT--CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCTATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGCAA-A-TTTTCtccgataatttcccatgtatattttaaaag
gi|14 : gTTTCTACTCACGTATTATGCGCG----T----TTT---TT---CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-CAA----TT-------------TTTTTT----TTA-A----TGTAA-A-TTTTtatttttgttaatttcccatgtatattttaaaag
gi|15 : gTTCTGCTCACGTATTATGCGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CT------TC-AATAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TTA-A----TGTAA-A-TTTTCttatttccgataatttcccatgtatattttaaaag
gi|16 : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGTAA-A-TTTTCtatttccgataatttcccatgtatattttaaaaga
gi|17 : cgTTTTTACTCCCGTATAAGGCGCA----T----TTT---TTTTTC---AACTTTTAAG-AT--T------TC-GAGAACG-GATG-CGCGATATAC--------ATAAGTACAGACG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TATAA-A-TTTTCtatttccgataatttcccatgtatattttaaaa
gi|18 : gTTTCTACTCATGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-TGCGATATAC--------ATAAGTATAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGTAA-A-TTTTtatttccgataatttcccatgtatattttaaaa
gi|19 : aTTTCTACTC-TGTATTAGGCGCA----T----TTT---TTTTTTC--AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGTAA-A-TTTTttatttccgataatttcccatgtatattttaaaa
gi|2 : TATTTATTATATATGC---A----A-TACAAATTGTCAAATAAATCGAG-AAGTAGCAAAGTGTTTAC----T--------ATTCTTTTCCCTT------GT-AGCCGAAAA-----T------GTT------------------------CAGAATGG-TT-ACAGT-AAGGTAAAAGTAATATTGACGAATGC---AGAATA---A---ATGCAACACTGTTGTCATCGTA-AA-TGTAT-TTCATTTACTTTTTTTTTGTTTTTGTT-------AATACG----GTTTAT-T----GTTTTTGTAAAACTTACAAAATAAAC--TCTATATAATATGTGGTGTTTCAT---TGTAAATGGTTTTA---AAATACTTT------CTTCTAAAttatttccgataatttcccatgtatattttaaa
gi|20 : TCAAGTATTAGGCGCG----G----CTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAG--------ATAAGTAAAGAAG--------ATTT-C-A----TA-------------TTTTTT----T---A----TGTAA-A-TTTTCcttaaagtagtaagagttactaaataattaaaagcaatgaaaaggacttctcccactatactaaactgtgatctgcttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtcctctatcatttcgcggtattgacgttggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatcgcttctcaataatatttattgatgagttactgtaccaatctactg
gi|21 : TTTCTGCTCACGTATTAGGTGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CTAGATCTTC-GAGAAGG-GATG-CGCGATATAC--------ATAA-TACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-A-TTTTtatttccgataatttcacatgtatattttaaaag
gi|22 : CAACTTTTAAG-AT-CT------TG-GAGAAGT-GATG-TGCATTATAA--------ACAAGAACAGAAG--------ATTT-T-G----TT-------------TTTGTT----T--------TGT-----TTTTCAAGGTTATT--------TGTTAAAGA-GCAGGCA-A-GATC----C--AGA----TATGTTTTGATGttatttccgataatat
gi|23 : tgttAACTTTTAAA-AT-CT------TC-GAGAAGA-GATG-CACGATATAT--------ATAAATGCAGAAG--------ATTT-C-A-----T-------------TTTTTT----T---A----TGTAA-A-TTTTC
gi|24 : tcaCTCATGTATTAGGCGCG----A----TTT---TTT---CCCAACTTCTGAGTAT-GTA-----TT-GAGAAAGTGATGTTGCGACAGAC--------tatttccgattttcccatgtatat
gi|25 : tTCTCTACTCATGTATTGTGCACA----T----TTT---TT---CCCCAACTTTAAGG-AT-TT------TCAAAGAAGgattcggaatgagatttc
gi|27 : ccaTTTTCCCCAACTTTTAAG-ATACT------CC-GA-AAGA-AATG-CACATTATAT--------GCTAGTACTTAAG--------ATTTCC-A----TT-------------TTTATT----C---A----atacagactgtgtatagggatcat
gi|28 : aTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGGTATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGTAA-A-TTTTa
gi|3 : TTTATTCTCATGTATTAGGTGTG----C----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTAGAGAAG--------ATTT-C-A----TT-------------TTTTTC----T---A----TGT-A-A-TTTTCAAAG--ATT--------TATT---GATTCAGAAA-A-GATTTTGCT--ACACCAGTATGTTCTGATATTAATTTC-AGGACAATTTCTTCATGT-GAGCTCAGTT-ATAGGTGATGATTTACATA-GCAGAGAATGTTGTATTCAAATTCAGTCCTTATACATTATATATGT---A----A-AACA---TGTCAAATAAATCGAA-AAATAAGAAAGTG-TTAC-------------A----------TT------GT-GACCAGAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTTGTTT-AC-GTAAAGGTGAAAGT-GTATGGACAAATGC---AG---A---A---ATGCAATACTGTTAT-AGCATA-AA-TGT-T-TTTATTCACACATAAAT--CTTTTATT-------GGTGAG----GTTTG--TAGTAGTTTATGT-----TTATAAAATAAAA--TCAATATAATATGTGGTATTTCGT---T----ATGATTAAA---AAATATTGTAAGAT--TTTTAAAAAAAAAAAAtta
gi|30 : -GAGATTGATTTAT-GATTATGATTCAACTA-CCGAAGAACCTTTTATTCAA----AGTCCATATtgactgtgtac
gi|31 : TTCTACTCACGTATTAGGCACG----T----TTT---TTTT---CCAACTTTTAAG-AT-CT------TC-GAGAA
gi|4 : A--------AAATGT--C----CAGAGTGGTT--ACAGTAA-GGTAAAAGT-ATATTGACGAATGC---AG---A---ATAAATGCAACACTGATGTCATCGTA-AA-TGTGT-TTCATTTACA--TTTTT--TTTTTATT-------AATACG----GTTTAT-TA----TTTTTGTAAAACTTACAAAATAAAC--TCTATATGATATGTGGTGTTTCAT---T----GT------A---AATTGTTTTAAAATACTTTTa
gi|5 : tttcccttgtagccaTTTCTTTTCATGTTTAAAGTGCA----TA---TTT---TTTTTCC--AACTTTTAAG-AT-CT------T-----------AT-------TACAC--------AAAAATACAGA-----------TTT-C-A----CT-------------TTTTTTCCCCT---A----AGGTA-A-TTTTTAAAG--ATT--------GACT---GAGACACAGACA-TATTTTG-G--AGTCTGGTATGTTCAGATGTTAAT------GACAATATCTATAAAAAGAGATCGATA-ACAGATGACGACTTATCTA-GTGGAGAACCTTTTATTCAAATTCAGTCTATATTCATTACGTATGC---AGTATA-AAT----TATCAAATAAATCAAG-AAGTATCGAAGTGTTTGC----TAA------A----------TTCC----AT-TACAGAAAC-----TTGAAATGTTCTA--------AAATAG-------CAGACTGG-TT-ACAGT-AAGATGGAAAT-Gttccaaacttaaagtagtaagagttactaaataattaaaagcaatcaaaaggacttctcccactatactaaactgtgatctatttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtccgctatcatttcgcggtattgacattggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatggcttctcaataatatttactgatgagttactgtaccaatctactg
gi|6 : cca-A-GATTTTT-TTGAGAACAGCTTGTTCAGATGTT--TTTCCAGAACAGTTTCTTTATCA-GAGATTGATT-ATAGATGATGATTTAC------GGAGAACCTTTTATTCAAATCCAGTCCATATTCATTATATATGC---A----GTAACAAC-TATCAAACAAATCCAAGAAGTATC-AATCTTTTA--------------A----------AT------GTAAACTTGAAAGAGGCTAG-AATGTTCTATTTTCTATAAATAA--C---GTAGACTGGTTTGACGG-AAAGGCGGTTGT-TTATTGGTGAATGT---GG---AATCA---ATGCAATACTGTTGTCATCATA-AA-TATATATTTATTTACACATATTC--CTTTTACG-------GGTATG----GTTTAT-TGGT-GTTCATTT-----CTATAAAATAAACTACCTGTCT-AGATGTAGaaaagaaagccagatactgtagctattttagaggtggtattgtttgaaaca
gi|7 : gTTTATCCTCACGTATTATGCGTG----TGTTTTTTGGGTTTTTTTCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CACGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-AATTTTCAAAG--ATT--------TATC---AATTCAGAAA-A-AGTTTTG-T--ACACCGGTATGTTCAGATATTAATTTC-AGGACAATTTCTTCATGT-GAGTTCGATT-ATAG-TGATGATTTACCTA-GCGGAGAATGTCTT-TTCAAATTCAGTGCTTATACATTATATATGCAGTA----A-AACA---TGTCAAATAAATCAAA-AAATAA--GAGTGTTTACTGCTT--------A----------TTTATGTCGT-GACTGGAAA-----T---AACATT-TA--------AAATAGAACAGAACAGACTGGTTT-AC-GTAAAGGTGAAAGT-GTAaatatcttaaaaagaaattgaa
gi|8 : gTTCTCACGTATTAGGCGTG----T----TTT---TTT----CCAAATTTTAAG-AT-CT------TC-GAGAAGG-AATG-CAGGATATACATACAGATATAAGTACAGA----------TTTT-C-A----TTTTTTTTTTTTTTTTTTTTT----T---A----AGTAA-T-TTTTCAAAG--ATT--------TATT---AATTCAGAAA-A-GATTTTGCT--ACACTGGTATGTTCAGATATTAATTTC-AAGACAAT
gi|8 : aAATAAATCGAA-AAATAAGGAAGTGTTTAC----T--------GATTATTTACGTT------GT-GACCAAAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTGGTTA-AT-GTAAAGGTGAAAGT-GTATCGACGAATGC---AGAATA---A---ATGCAAAACTGTTATCGTCATA-AACTGTaaatcgaaaaataaggaagtgtttactgattatttacgttgtgaccaaaaataacatttaaaatagcacagactggttaatgtaaaggtgaaagtgtatcgacgaatgcagaataaatgcaaaactgttatcgtcataaactgtt
gi|9 : attctcacgtattaggcgtgtttttttccaaattttaagatcttcgagaaggaatgcaggatatacatacagatataagtacagattttcattttttttttttttttttttttaagtaatttttcaaagatttattaattcagaaaagattttgctacactggtatgttcagatattaatttcaagacTTTCCATTCAAGTATTAAGTGTGCATAT----TTT---TTTTCA---AACTTCTAGG-AT-CT------TC-AAt
gi|9 : tacca-A----TT-------------TTTTTT----C---AAACTTCTAGGA-TCTTCAAAG--ATT--------GATC----AGTCTGAAC-ATG--TTTG-G--AGACTGGTAT------------ATTTT-AGGACAATTTCTTTATGG-GAGATATGTA-ATAGATCATGATTTATCTA-AGGGAGAACATTTTATTCATATTCAGTCTATATTCATTATATGTGC---ATT--A-AAAA---T------TAAAT---G-AAGTATCGAagattgatcagtctgaacatgtttggagactggtatattttaggacaatttctttatgggagatatgtaatagatcatgatttatctaagggagaacattttattcatattcagtctatattcattatatgtgcattaaaaattaaatgaagtatcga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTGCAAAATTTTAGGTACCATTACGGTAACTAATAATTTAAAGCAATCAACACGAGACTTGTCCCGCTAACAATCAATTGTGGCCAGTCATAATTAAATCTGGCTCAAACTCTAACTTAGGTAGGTATTTAAAATCAAACATATGTGCCAAGTGTCAGCTGTCATTTCACGGTATTAAA
Unaligned ( gi|26 ): TACACTGATAATTTAAAGAACATGATTTTTTTTTATGTAAATTTTCTATTTCCGATAATTTCCCATGTATATTTTAAAA
Unaligned ( gi|29 ): ATTCTTCTCATATATAAGGCTCATATATTTCCCTTTTTAGATATTGGAAAAGGAATGCGCATTATATACAAGT
Unaligned ( gi|32 ): TTACAATAATTTCCCATGTATATTTTAAAAG
Alignments
lowQualScore : 111111 1111111111111 111 11111111 11 33333333 1111 111 99999999999999999999999999999999 33333333333333333333333333 2222222 1 111 22222222222 11 22222 11 1111 1111111 44444 55555555 111 33333333333
lowQualScore : 4444 6666 333 777777 1 1 666666 1 1 1 66666666 77777777 4 1 9999 0000000000000 4444 999 4444 2 2 66 66666666 2 66 5 777 88 0 66 1 0 0 5 66 0 0 5 0 7 5 0 66666666 9999 1 5 1 333 55555555555555555555555555555555 77 22222222222222222222222222 0000000 9 55 4 6 5 000 22222222222 5 2 5 5 4 6 6 44 1 11 00000 11 1 7777 7777777 1 11111 9 0 44444444 0 1 777 444 33333333333 1
lowQualScore : .... .... ... ...... . . ...... . . . ........ ........ . . .... ............. .... ... .... . . .. ........ . .. . ... .. . .. . . . . .. . . . . . . . ........ .... . . . ... ................................ .. .......................... ....... . .. . . . ... ........... . . . . . . . .. . .. ..... .. . .... ....... . ..... . . ........ . . ... ... ........... .
lowQualScore : 2222 2222 555 666666 7 7 555555 7 9 9 99999999 22222222 0 9 8888 5555555555555 0000 000 0000 0 0 11 11111111 2 55 0 444 66 1 11 1 9 1 7 77 3 4 7 1 9 7 7 66666666 6666 7 0 1 111 33333333333333333333333333333333 44 66666666666666666666666666 0000000 4 44 8 5 0 000 00000000000 7 7 7 7 2 7 7 22 4 00 00000 00 4 0000 2222222 0 66666 8 2 88888888 2 0 555 888 11111111111 0
consensus : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-A-TTTTCAAAG--ATT--------TATTGATTCAGAGA-A-GATTTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCAT---TGTAAATGGTTTNA---AAATACTTTAAGAT-TTCTAAAAANAAAAAA
Reference ( family-2833 ) : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-A-TTTTCAAAG--ATT--------TATTGATTCAGAAA-A-GATTTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCAT---T----ATGGTTTNA---AAATATTTTAAAATCTTTTAAAAANAAAAAA
gi|1 : TTTCTTCTCATGTATAAAGCACA----T----TTT-------CCCTCAACTTTTAAG-AT-CT------TA-GAGAATG-GATG-CACATTATAC--------ACAAGTATAGAAGCAAAGGAGATTTTC-A----CT-------------TTTTTT----CCCAA----GGTAA-T-TTGTTAAAG--ATAGACCGAGATACTGAT--------A-TATTTTG-GAGAAC--TTTATGTTTGGATGTTATTTTC-AGAACGATTTCTTTACGA-GAGGTTGATT-ATAGATAATGACTTAC-TATGCGGAAAACCATTTATCTAAATTCATTCCATATTCATTACATATGT---AGTC-AAAGT---TGTTAAATAAAT-CAAGAAGAATC---ATGTTTAC----TATTCCACGA----------TT------GT-TACCGGAAA-----T---A--TTC-CA--------AAATAG--C---ACA-ACTGG-TT-ACGATTCA-GTGAAAGT-GTATTGATGAATGTGAAAT---A---A---ATGCA-ATACTGTTGTCATCATAGAA-TGTAT-T-TTTTTGACACATATTT--CTTTTGTTTATTTAGATTATATTTTGTTTATATAGT-GTTTGTGT-----TTATAAAATAAACCC--TATGATATGTGGTTTTCCATATCC----ATAGTTTGATTCAAA---TCCAAAA-----TAAAAACAAAAAA
gi|11 : TTTCTACTCATGTATAATGCACT----T----ATT---TTATTCCTCA--TTTTAAT-AT-CT------TT-G-GAAGG-TATA-CACATTATAA--------GCAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TCA-A----GGTAA-T-TTGTCCAAG--AAA--------GGTTGATTTAGAGA-T-GTTTTTG--AGAAG--TATATGTGCAGATTTTAATTTctggtatttttttacgattcaagagc
gi|12 : caTTTCTGCTCACGTATTAGTCGCG----C----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------TTTT-C-ATTTTTT-------------TTTTTT----T---A----TGTAA-A-TTTT--------TT--------TATT
gi|13 : gTTTCTACTCACGTATTATGCAGG----T----TTT---TTT--CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCTATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGCAA-A-TTTTCtccgataatttcccatgtatattttaaaag
gi|14 : gTTTCTACTCACGTATTATGCGCG----T----TTT---TT---CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-CAA----TT-------------TTTTTT----TTA-A----TGTAA-A-TTTTtatttttgttaatttcccatgtatattttaaaag
gi|15 : gTTCTGCTCACGTATTATGCGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CT------TC-AATAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TTA-A----TGTAA-A-TTTTCttatttccgataatttcccatgtatattttaaaag
gi|16 : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGTAA-A-TTTTCtatttccgataatttcccatgtatattttaaaaga
gi|17 : cgTTTTTACTCCCGTATAAGGCGCA----T----TTT---TTTTTC---AACTTTTAAG-AT--T------TC-GAGAACG-GATG-CGCGATATAC--------ATAAGTACAGACG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TATAA-A-TTTTCtatttccgataatttcccatgtatattttaaaa
gi|18 : gTTTCTACTCATGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-TGCGATATAC--------ATAAGTATAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGTAA-A-TTTTtatttccgataatttcccatgtatattttaaaa
gi|19 : aTTTCTACTC-TGTATTAGGCGCA----T----TTT---TTTTTTC--AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGTAA-A-TTTTttatttccgataatttcccatgtatattttaaaa
gi|2 : TATTTATTATATATGC---A----ATACAAATTGTCAAATAAAT-CGAGAAGTAGCAAAGTGTTTAC----T--------ATTCTTTTCCCTT------GT-AGCCGAAAA-----T------GTT------------------------CAGAATGG-TT-ACAGT-AAGGTAAAAGTAATATTGACGAATGC---AGAATA---A---ATGCA-ACACTGTTGTCATCGTA-AA-TGTAT-T-TCATTTACTTTTTTTTTGTTTTTG-----TTAA--TACG----GTTTAT----T-GTTTTTGTAAAACTTACAAAATAAACTCTATATAATATGTGGTGTTTCAT---TGTAAATGGTTTTA---AAATACTT-----TCTTCTAAAttatttccgataatttcccatgtatattttaaa
gi|20 : TCAAGTATTAGGCGCG----G----CTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAG--------ATAAGTAAAGAAG--------ATTT-C-A----TA-------------TTTTTT----T---A----TGTAA-A-TTTTCcttaaagtagtaagagttactaaataattaaaagcaatgaaaaggacttctcccactatactaaactgtgatctgcttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtcctctatcatttcgcggtattgacgttggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatcgcttctcaataatatttattgatgagttactgtaccaatctactg
gi|21 : TTTCTGCTCACGTATTAGGTGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CTAGATCTTC-GAGAAGG-GATG-CGCGATATAC--------ATAA-TACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-A-TTTTtatttccgataatttcacatgtatattttaaaag
gi|22 : CAACTTTTAAG-AT-CT------TG-GAGAAGT-GATG-TGCATTATAA--------ACAAGAACAGAAG--------ATTT-T-G----TT-------------TTTGTT----T--------TGT-----TTTTCAAGGTTATT--------TGTTAA---AGAGC-A-GGC-----AAGATCCAGATATGTTTTGATGttatttccgataatat
gi|23 : tgttAACTTTTAAA-AT-CT------TC-GAGAAGA-GATG-CACGATATAT--------ATAAATGCAGAAG--------ATTT-C-A-----T-------------TTTTTT----T---A----TGTAA-A-TTTTC
gi|24 : tcaCTCATGTATTAGGCGCG----A----TTT---TTT---CCCAACTTCTGAGTAT-GTA-----TT-GAGAAAGTGATGTTGCGACAGAC--------tatttccgattttcccatgtatat
gi|25 : tTCTCTACTCATGTATTGTGCACA----T----TTT---TT---CCCCAACTTTAAGG-AT-TT------TCAAAGAAGgattcggaatgagatttc
gi|27 : ccaTTTTCCCCAACTTTTAAG-ATACT------CC-GA-AAGA-AATG-CACATTATAT--------GCTAGTACTTAAG--------ATTTCC-A----TT-------------TTTATT----C---A----atacagactgtgtatagggatcat
gi|28 : aTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGGTATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGTAA-A-TTTTa
gi|3 : TTTATTCTCATGTATTAGGTGTG----C----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTAGAGAAG--------ATTT-C-A----TT-------------TTTTTC----T---A----TGT-A-A-TTTTCAAAG--ATT--------TATTGATTCAGAAA-A-GATTTTGCTACACC--AGTATGTTCTGATATTAATTTC-AGGACAATTTCTTCATGT-GAGCTCAGTT-ATAGGTGATGATTTACATA-GCAGAGAATGTTGTATTCAAATTCAGTCCTTATACATTATATATGT---A----AAACA---TGTCAAATAAAT-CGAAAAATAAGAAAGTG-TTAC-------------A----------TT------GT-GACCAGAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTTGTTT-AC-GTAAAGGTGAAAGT-GTATGGACAAATGC---AG---A---A---ATGCA-ATACTGTTAT-AGCATA-AA-TGT-T-T-TTATTCACACATAAAT--CTTTTA-----TTGG--TGAG----GTTTG--TAGTAGTTTATGT-----TTATAAAATAAAATCAATATAATATGTGGTATTTCGT---T----ATGATTAAA---AAATATTGTAAGAT-TTTTAAAAAAAAAAAAtta
gi|30 : -GAGATTGATTTAT-GATTATGATTCAACTA-CCGAAGAACCTTTTATTCAA----AGTCCATATtgactgtgtac
gi|31 : TTCTACTCACGTATTAGGCACG----T----TTT---TTTT---CCAACTTTTAAG-AT-CT------TC-GAGAA
gi|4 : A--------AAATGT--C----CAGAGTGGTT--ACAGTAA-GGTAAAAGT-ATATTGACGAATGC---AG---A---ATAAATGCA-ACACTGATGTCATCGTA-AA-TGTGT-T-TCATTTACA--TTTTT--TTTTTA-----TTAA--TACG----GTTTAT-TA----TTTTTGTAAAACTTACAAAATAAACTCTATATGATATGTGGTGTTTCAT---TGTAAATTGTTTTA---AAATACTTTa
gi|5 : tttcccttgtagccaTTTCTTTTCATGTTTAAAGTGCA----TA---TTT---TTTTTCC--AACTTTTAAG-AT-CT------T-----------AT-------TACAC--------AAAAATACAGA-----------TTT-C-A----CT-------------TTTTTTCCCCT---A----AGGTA-A-TTTTTAAAG--ATT--------GACTGAGACACAGACA-TATTTTG-GAGTCT--GGTATGTTCAGATGTTAAT------GACAATATCTATAAAAAGAGATCGATA-ACAGATGACGACTTATCTA-GTGGAGAACCTTTTATTCAAATTCAGTCTATATTCATTACGTATGCAGTA--T-AAAT----TATCAAATAAAT-CAAGAAGTATCGAAGTGTTTGC----TAA------A----------TTCC----AT-TACAGAAAC-----TTGAAATGTTCTA--------AAATAG-------CAGACTGG-TT-ACAGT-AAGATGGAAAT-G-------AAA------AG---A---A---AGCCAGATACTGTAGCTATTTTA-GA-GGTGG-TATTGTTTtttccaaacttaaagtagtaagagttactaaataattaaaagcaatcaaaaggacttctcccactatactaaactgtgatctatttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtccgctatcatttcgcggtattgacattggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatggcttctcaataatatttactgatgagttactgtaccaatctactg
gi|6 : ccaTTTTG--AGAAC--AGCTTGTTCAGATGTT--TTTCCAGAACAGTTTCTTTATCA-GAGATTGATT-ATAGATGATGATTTAC------GGAGAACCTTTTATTCAAATCCAGTCCATATTCATTATATATGC---A--G-TAACAAC-TATCAAACAAATCCAAGAAGTATC-AATCTTTTA--------------A----------AT------GTAAACTTGAAAGAGGCTAG-AATGTTCTATTTTCTATAAATAA--C---GTAGACTGGTTTGACGG-AAAGGCGGTTGT-TTATTGGTGAATGT---GG---AATCA---ATGCA-ATACTGTTGTCATCATA-AA-TATATAT-TTATTTACACATATTC--CTTTTA-----CGGG--TATG----GTTTAT-TGGT-GTTCATTT-----CTATAAAATAAACTgaaaca
gi|7 : gagatttTTTATCCTCACGTATTATGCGTG----TGTTTTTTGGGTTTTTTTCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CACGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAA-AATTTTCAAAG--ATT--------TATCAATTCAGAAA-A-AGTTTTG-TACACC--GGTATGTTCAGATATTAATTTC-AGGACAATTTCTTCATGT-GAGTTCGATT-ATAG-TGATGATTTACCTA-GCGGAGAATGTCTT-TTCAAATTCAGTGCTTATACATTATATATGC---AG-TAAAACA---TGTCAAATAAAT-CAAAAAATAA--GAGTGTTTACTGCTT--------A----------TTTATGTCGT-GACTGGAAA-----T---AACATT-TA--------AAATAGAACAGAACAGACTGGTTT-AC-GTAAAGGTGAAAGT-GTAacctgtctagatgtagaatatcttaaaaagaaattgaa
gi|8 : gCTCACGTATTAGGCGTG----T----TTT---TTT----CCAAATTTTAAG-AT-CT------TC-GAGAAGG-AATG-CAGGATATACATACAGATATAAGTACAGA----------TTTT-C-A----TTTTTTTTTTTTTTTTTTTTT----T---A----AGTAA-T-TTTTCAAAG--ATT--------TATTAATTCAGAAA-A-GATTTTGCTACACT--GGTATGTTCAGATATTAATTTC-AAGACAAT
gi|8 : attAATAAAT-CGAAAAATAAGGAAGTGTTTAC----T--------GATTATTTACGTT------GT-GACCAAAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTGGTTA-AT-GTAAAGGTGAAAGT-GTATCGACGAATGC---AGAATA---A---ATGCA-AAACTGTTATCGTCATA-AACTGTaaatcgaaaaataaggaagtgtttactgattatttacgttgtgaccaaaaataacatttaaaatagcacagactggttaatgtaaaggtgaaagtgtatcgacgaatgcagaataaatgcaaaactgttatcgtcataaactgtt
gi|9 : attctcacgtattaggcgtgtttttttccaaattttaagatcttcgagaaggaatgcaggatatacatacagatataagtacagattttcattttttttttttttttttttttaagtaatttttcaaagatttattaattcagaaaagattttgctacactggtatgttcagatattaatttcaagacTTTCCATTCAAGTATTAAGTGTGCATAT----TTT---TTTTCA---AACTTCTAGG-AT-CT------TC-AAt
gi|9 : tacca-A----TT-------------TTTTTT----C---AAACTTCTAGGA-TCTTCAAAG--ATT--------GATC-AGTCTGAAC-ATG--TTTG-GAGACT--GGTAT------------ATTTT-AGGACAATTTCTTTATGG-GAGATATGTA-ATAGATCATGATTTATCTA-AGGGAGAACATTTTATTCATATTCAGTCTATATTCATTATATGTGC---AT-T-AAAAA---T------TAAAT----GAAGTATCGAagattgatcagtctgaacatgtttggagactggtatattttaggacaatttctttatgggagatatgtaatagatcatgatttatctaagggagaacattttattcatattcagtctatattcattatatgtgcattaaaaattaaatgaagtatcga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTGCAAAATTTTAGGTACCATTACGGTAACTAATAATTTAAAGCAATCAACACGAGACTTGTCCCGCTAACAATCAATTGTGGCCAGTCATAATTAAATCTGGCTCAAACTCTAACTTAGGTAGGTATTTAAAATCAAACATATGTGCCAAGTGTCAGCTGTCATTTCACGGTATTAAA
Unaligned ( gi|26 ): TACACTGATAATTTAAAGAACATGATTTTTTTTTATGTAAATTTTCTATTTCCGATAATTTCCCATGTATATTTTAAAA
Unaligned ( gi|29 ): ATTCTTCTCATATATAAGGCTCATATATTTCCCTTTTTAGATATTGGAAAAGGAATGCGCATTATATACAAGT
Unaligned ( gi|32 ): TTACAATAATTTCCCATGTATATTTTAAAAG
Alignments
lowQualScore : 111111 1111111111111 111 1111 1 11 33333333 1111 111 99999999999999999999999999999999 33333333333333333333333333 2222222 1 111 22222222222 11 22222 11 1111 1111111 44444 111 33333333
lowQualScore : 4444 6666 333 777777 1 1 666666 1 1 1 66666666 77777777 4 1 9999 0000000000000 4444 999 4444 2 2 66 1 333 0000 0 1 4 88 0 66 1 0 0 5 66 0 0 5 0 7 5 0 66666666 9999 1 5 1 333 55555555555555555555555555555555 77 22222222222222222222222222 0000000 9 55 4 6 5 000 22222222222 5 2 5 5 4 6 6 44 1 11 00000 11 1 7777 7777777 1 11111 9 0 3 9999 0 1 777 88888888 0 1
lowQualScore : .... .... ... ...... . . ...... . . . ........ ........ . . .... ............. .... ... .... . . .. . ... .... . . . .. . .. . . . . .. . . . . . . . ........ .... . . . ... ................................ .. .......................... ....... . .. . . . ... ........... . . . . . . . .. . .. ..... .. . .... ....... . ..... . . . .... . . ... ........ . .
lowQualScore : 2222 2222 555 666666 7 7 555555 7 9 9 99999999 22222222 0 9 8888 5555555555555 0000 000 0000 0 0 11 7 222 6666 0 4 4 66 1 11 1 9 1 7 77 3 4 7 1 9 7 7 66666666 6666 7 0 1 111 33333333333333333333333333333333 44 66666666666666666666666666 0000000 4 44 8 5 0 000 00000000000 7 7 7 7 2 7 7 22 4 00 00000 00 4 0000 2222222 0 66666 8 2 2 5555 2 0 555 22222222 2 0
consensus : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
Reference ( family-2833 ) : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
gi|1 : TTTCTTCTCATGTATAAAGCACA----T----TTT-------CCCTCAACTTTTAAG-AT-CT------TA-GAGAATG-GATG-CACATTATAC--------ACAAGTATAGAAGCAAAGGAGATTTTC-A----CT-------------TTTTTT----CCCAA----GGT-AA-TTTGTTAAAG--AT--A--GACCGAGATACTGATATAT-TTTG-GAGAAC--TTTATGTTTGGATGTTATTTTC-AGAACGATTTCTTTACGA-GAGGTTGATT-ATAGATAATGACTTAC-TATGCGGAAAACCATTTATCTAAATTCATTCCATATTCATTACATATGT---AGTC-AAAGT---TGTTAAATAAAT-CAAGAAGAATC---ATGTTTAC----TATTCCACGA----------TT------GT-TACCGGAAA-----T---A--TTC-CA--------AAATAG--C---ACA-ACTGG-TT-ACGATTCA-GTGAAAGT-GTATTGATGAATGTGAAAT---A---A---ATGCA-ATACTGTTGTCATCATAGAA-TGTAT-T-TTTTTGACACATATTT--CTTTTGTTTATTTAGATTATATTTTGTTTATATAGT-GTTTGTGT-----TTATAAAATAAACCC--TATGATATGTGGTTTTCCA-TATCCATAGTTTGATTCAAATCC---AAAA----TAAAAACAAAAAA
gi|11 : TTTCTACTCATGTATAATGCACT----T----ATT---TTATTCCTCA--TTTTAAT-AT-CT------TT-G-GAAGG-TATA-CACATTATAA--------GCAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TCA-A----GGT-AA-TTTGTCCAAG--AAAGGTTGATTTAGA----GA-TGTT-TTTG--AGAAG--TATATGTGCAGATTTTAATTTctggtatttttttacgattcaagagc
gi|12 : caTTTCTGCTCACGTATTAGTCGCG----C----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------TTTT-C-ATTTTTT-------------TTTTTT----T---A----TGT-AA-ATTTT--------TTTATT
gi|13 : gTTTCTACTCACGTATTATGCAGG----T----TTT---TTT--CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCTATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGC-AA-ATTTTCtccgataatttcccatgtatattttaaaag
gi|14 : gTTTCTACTCACGTATTATGCGCG----T----TTT---TT---CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-CAA----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTtatttttgttaatttcccatgtatattttaaaag
gi|15 : gTTCTGCTCACGTATTATGCGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CT------TC-AATAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTCttatttccgataatttcccatgtatattttaaaag
gi|16 : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTCtatttccgataatttcccatgtatattttaaaaga
gi|17 : cgTTTTTACTCCCGTATAAGGCGCA----T----TTT---TTTTTC---AACTTTTAAG-AT--T------TC-GAGAACG-GATG-CGCGATATAC--------ATAAGTACAGACG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TAT-AA-ATTTTCtatttccgataatttcccatgtatattttaaaa
gi|18 : gTTTCTACTCATGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-TGCGATATAC--------ATAAGTATAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTtatttccgataatttcccatgtatattttaaaa
gi|19 : aTTTCTACTC-TGTATTAGGCGCA----T----TTT---TTTTTTC--AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTttatttccgataatttcccatgtatattttaaaa
gi|2 : TATTTATTATATATGC---A----ATACAAATTGTCAAATAAAT-CGAGAAGTAGCAAAGTGTTTAC----T--------ATTCTTTTCCCTT------GT-AGCCGAAAA-----T------GTT------------------------CAGAATGG-TT-ACAGT-AAGGTAAAAGTAATATTGACGAATGC---AGAATA---A---ATGCA-ACACTGTTGTCATCGTA-AA-TGTAT-T-TCATTTACTTTTTTTTTGTTTTTG-----TTAA--TACG----GTTTAT----T-GTTTTTGTAAAACTTACAAAATAAACTCTATATAATATGTGGTGTTTCATTGTAAATGGTTTTA---AAATACTTT----CTTCTAAAttatttccgataatttcccatgtatattttaaa
gi|20 : TCAAGTATTAGGCGCG----G----CTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAG--------ATAAGTAAAGAAG--------ATTT-C-A----TA-------------TTTTTT----T---A----TGT-AA-ATTTTCcttaaagtagtaagagttactaaataattaaaagcaatgaaaaggacttctcccactatactaaactgtgatctgcttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtcctctatcatttcgcggtattgacgttggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatcgcttctcaataatatttattgatgagttactgtaccaatctactg
gi|21 : TTTCTGCTCACGTATTAGGTGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CTAGATCTTC-GAGAAGG-GATG-CGCGATATAC--------ATAA-TACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTtatttccgataatttcacatgtatattttaaaag
gi|22 : CAACTTTTAAG-AT-CT------TG-GAGAAGT-GATG-TGCATTATAA--------ACAAGAACAGAAG--------ATTT-T-G----TT-------------TTTGTT----T--------TGT-----TTTTCAAGGTTATTTGTTAA---AGA----GC-AGGC------AAGATCCAGATATGTTTTGATGttatttccgataatat
gi|23 : tgttAACTTTTAAA-AT-CT------TC-GAGAAGA-GATG-CACGATATAT--------ATAAATGCAGAAG--------ATTT-C-A-----T-------------TTTTTT----T---A----TGT-AA-ATTTTC
gi|24 : tcaCTCATGTATTAGGCGCG----A----TTT---TTT---CCCAACTTCTGAGTAT-GTA-----TT-GAGAAAGTGATGTTGCGACAGAC--------tatttccgattttcccatgtatat
gi|25 : tTCTCTACTCATGTATTGTGCACA----T----TTT---TT---CCCCAACTTTAAGG-AT-TT------TCAAAGAAGgattcggaatgagatttc
gi|27 : ccaTTTTCCCCAACTTTTAAG-ATACT------CC-GA-AAGA-AATG-CACATTATAT--------GCTAGTACTTAAG--------ATTTCC-A----TT-------------TTTATT----C---A----atacagactgtgtatagggatcat
gi|28 : aTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGGTATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTa
gi|3 : TTTATTCTCATGTATTAGGTGTG----C----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTAGAGAAG--------ATTT-C-A----TT-------------TTTTTC----T---A----TGT--A-ATTTTCAAAG--ATTTATTGATTCAGA----AA-AGAT-TTTGCTACACC--AGTATGTTCTGATATTAATTTC-AGGACAATTTCTTCATGT-GAGCTCAGTT-ATAGGTGATGATTTACATA-GCAGAGAATGTTGTATTCAAATTCAGTCCTTATACATTATATATGT---A----AAACA---TGTCAAATAAAT-CGAAAAATAAGAAAGTG-TTAC-------------A----------TT------GT-GACCAGAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTTGTTT-AC-GTAAAGGTGAAAGT-GTATGGACAAATGC---AG---A---A---ATGCA-ATACTGTTAT-AGCATA-AA-TGT-T-T-TTATTCACACATAAAT--CTTTTA-----TTGG--TGAG----GTTTG--TAGTAGTTTATGT-----TTATAAAATAAAATCAATATAATATGTGGTATTTCGTT----ATGATTAAA---AAATATTGTAAGATTTTTAAAAAAAAAAAAtta
gi|30 : -GAGATTGATTTAT-GATTATGATTCAACTA-CCGAAGAACCTTTTATTCAA----AGTCCATATtgactgtgtac
gi|31 : TTCTACTCACGTATTAGGCACG----T----TTT---TTTT---CCAACTTTTAAG-AT-CT------TC-GAGAA
gi|4 : A--------AAATGT--C----CAGAGTGGTT--ACAGTAA-GGTAAAAGT-ATATTGACGAATGC---AG---A---ATAAATGCA-ACACTGATGTCATCGTA-AA-TGTGT-T-TCATTTACA--TTTTT--TTTTTA-----TTAA--TACG----GTTTAT-TA----TTTTTGTAAAACTTACAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATTGTTTTA---AAATACTTT----TTTCCAAAa
gi|5 : tttcccttgtagccaTTTCTTTTCATGTTTAAAGTGCA----TA---TTT---TTTTTCC--AACTTTTAAG-AT-CT------T-----------AT-------TACAC--------AAAAATACAGA-----------TTT-C-A----CT-------------TTTTTTCCCCT---A----AGG-TA-ATTTTTAAAG--ATTGACTGAGACACA----GACATAT-TTTG-GAGTCT--GGTATGTTCAGATGTTAAT------GACAATATCTATAAAAAGAGATCGATA-ACAGATGACGACTTATCTA-GTGGAGAACCTTTTATTCAAATTCAGTCTATATTCATTACGTATGCAGTA--T-AAAT----TATCAAATAAAT-CAAGAAGTATCGAAGTGTTTGC----TAA------A----------TTCC----AT-TACAGAAAC-----TTGAAATGTTCTA--------AAATAG-------CAGACTGG-TT-ACAGT-AAGATGGAAAT-G-------AAA------AG---A---A---AGCCAGATACTGTAGCTATTTTA-GA-GGTGG-TATTGTTTcttaaagtagtaagagttactaaataattaaaagcaatcaaaaggacttctcccactatactaaactgtgatctatttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtccgctatcatttcgcggtattgacattggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatggcttctcaataatatttactgatgagttactgtaccaatctactg
gi|6 : ccaT-TTTG--AGAAC--AGCTTGTTCAGATGTT--TTTCCAGAACAGTTTCTTTATCA-GAGATTGATT-ATAGATGATGATTTAC------GGAGAACCTTTTATTCAAATCCAGTCCATATTCATTATATATGC---A--G-TAACAAC-TATCAAACAAATCCAAGAAGTATC-AATCTTTTA--------------A----------AT------GTAAACTTGAAAGAGGCTAG-AATGTTCTATTTTCTATAAATAA--C---GTAGACTGGTTTGACGG-AAAGGCGGTTGT-TTATTGGTGAATGT---GG---AATCA---ATGCA-ATACTGTTGTCATCATA-AA-TATATAT-TTATTTACACATATTC--CTTTTA-----CGGG--TATG----GTTTAT-TGGT-GTTCATTT-----CTATAAAATAAACTgaaaca
gi|7 : gagatttTTTATCCTCACGTATTATGCGTG----TGTTTTTTGGGTTTTTTTCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CACGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAAA-ATTTTCAAAG--ATTTATCAATTCAGA----AA-AAGT-TTTG-TACACC--GGTATGTTCAGATATTAATTTC-AGGACAATTTCTTCATGT-GAGTTCGATT-ATAG-TGATGATTTACCTA-GCGGAGAATGTCTT-TTCAAATTCAGTGCTTATACATTATATATGC---AG-TAAAACA---TGTCAAATAAAT-CAAAAAATAA--GAGTGTTTACTGCTT--------A----------TTTATGTCGT-GACTGGAAA-----T---AACATT-TA--------AAATAGAACAGAACAGACTGGTTT-AC-GTAAAGGTGAAAGT-GTAacctgtctagatgtagaatatcttaaaaagaaattgaa
gi|8 : gCTCACGTATTAGGCGTG----T----TTT---TTT----CCAAATTTTAAG-AT-CT------TC-GAGAAGG-AATG-CAGGATATACATACAGATATAAGTACAGA----------TTTT-C-A----TTTTTTTTTTTTTTTTTTTTT----T---A----AGT-AA-TTTTTCAAAG--ATTTATTAATTCAGA----AA-AGAT-TTTGCTACACT--GGTATGTTCAGATATTAATTTC-AAGACAAT
gi|8 : attAATAAAT-CGAAAAATAAGGAAGTGTTTAC----T--------GATTATTTACGTT------GT-GACCAAAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTGGTTA-AT-GTAAAGGTGAAAGT-GTATCGACGAATGC---AGAATA---A---ATGCA-AAACTGTTATCGTCATA-AACTGTaaatcgaaaaataaggaagtgtttactgattatttacgttgtgaccaaaaataacatttaaaatagcacagactggttaatgtaaaggtgaaagtgtatcgacgaatgcagaataaatgcaaaactgttatcgtcataaactgtt
gi|9 : attctcacgtattaggcgtgtttttttccaaattttaagatcttcgagaaggaatgcaggatatacatacagatataagtacagattttcattttttttttttttttttttttaagtaatttttcaaagatttattaattcagaaaagattttgctacactggtatgttcagatattaatttcaagacTTTCCATTCAAGTATTAAGTGTGCATAT----TTT---TTTTCA---AACTTCTAGG-AT-CT------TC-AAt
gi|9 : tacca-A----TT-------------TTTTTT----C---AAACTTCT-AGGATCTTCAAAG--ATTGATCAGTCT-------GA-ACATGTTTG-GAGACT--GGTAT------------ATTTT-AGGACAATTTCTTTATGG-GAGATATGTA-ATAGATCATGATTTATCTA-AGGGAGAACATTTTATTCATATTCAGTCTATATTCATTATATGTGC---AT-T-AAAAA---T------TAAAT----GAAGTATCGAagattgatcagtctgaacatgtttggagactggtatattttaggacaatttctttatgggagatatgtaatagatcatgatttatctaagggagaacattttattcatattcagtctatattcattatatgtgcattaaaaattaaatgaagtatcga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTGCAAAATTTTAGGTACCATTACGGTAACTAATAATTTAAAGCAATCAACACGAGACTTGTCCCGCTAACAATCAATTGTGGCCAGTCATAATTAAATCTGGCTCAAACTCTAACTTAGGTAGGTATTTAAAATCAAACATATGTGCCAAGTGTCAGCTGTCATTTCACGGTATTAAA
Unaligned ( gi|26 ): TACACTGATAATTTAAAGAACATGATTTTTTTTTATGTAAATTTTCTATTTCCGATAATTTCCCATGTATATTTTAAAA
Unaligned ( gi|29 ): ATTCTTCTCATATATAAGGCTCATATATTTCCCTTTTTAGATATTGGAAAAGGAATGCGCATTATATACAAGT
Unaligned ( gi|32 ): TTACAATAATTTCCCATGTATATTTTAAAAG
Alignments
lowQualScore : 111111 1111111111111 111 1111 1 11 33333333 1111 111 99999999999999999999999999999999 33333333333333333333333333 2222222 1 111 22222222222 11 22222 11 1111 1111111 44444 111 33333333
lowQualScore : 4444 6666 333 777777 1 1 666666 1 1 1 66666666 77777777 4 1 9999 0000000000000 4444 999 4444 2 2 66 1 333 0000 0 1 4 88 0 66 1 0 0 5 66 0 0 5 0 7 5 0 66666666 9999 1 5 1 333 55555555555555555555555555555555 77 22222222222222222222222222 0000000 9 55 4 6 5 000 22222222222 5 2 5 5 4 6 6 44 1 11 00000 11 1 7777 7777777 1 11111 9 0 3 9999 0 1 777 88888888 0 1
lowQualScore : .... .... ... ...... . . ...... . . . ........ ........ . . .... ............. .... ... .... . . .. . ... .... . . . .. . .. . . . . .. . . . . . . . ........ .... . . . ... ................................ .. .......................... ....... . .. . . . ... ........... . . . . . . . .. . .. ..... .. . .... ....... . ..... . . . .... . . ... ........ . .
lowQualScore : 2222 2222 555 666666 7 7 555555 7 9 9 99999999 22222222 0 9 8888 5555555555555 0000 000 0000 0 0 11 7 222 6666 0 4 4 66 1 11 1 9 1 7 77 3 4 7 1 9 7 7 66666666 6666 7 0 1 111 33333333333333333333333333333333 44 66666666666666666666666666 0000000 4 44 8 5 0 000 00000000000 7 7 7 7 2 7 7 22 4 00 00000 00 4 0000 2222222 0 66666 8 2 2 5555 2 0 555 22222222 2 0
consensus : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
Reference ( family-2833 ) : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
gi|1 : TTTCTTCTCATGTATAAAGCACA----T----TTT-------CCCTCAACTTTTAAG-AT-CT------TA-GAGAATG-GATG-CACATTATAC--------ACAAGTATAGAAGCAAAGGAGATTTTC-A----CT-------------TTTTTT----CCCAA----GGT-AA-TTTGTTAAAG--AT--A--GACCGAGATACTGATATAT-TTTG-GAGAAC--TTTATGTTTGGATGTTATTTTC-AGAACGATTTCTTTACGA-GAGGTTGATT-ATAGATAATGACTTAC-TATGCGGAAAACCATTTATCTAAATTCATTCCATATTCATTACATATGT---AGTC-AAAGT---TGTTAAATAAAT-CAAGAAGAATC---ATGTTTAC----TATTCCACGA----------TT------GT-TACCGGAAA-----T---A--TTC-CA--------AAATAG--C---ACA-ACTGG-TT-ACGATTCA-GTGAAAGT-GTATTGATGAATGTGAAAT---A---A---ATGCA-ATACTGTTGTCATCATAGAA-TGTAT-T-TTTTTGACACATATTT--CTTTTGTTTATTTAGATTATATTTTGTTTATATAGT-GTTTGTGT-----TTATAAAATAAACCC--TATGATATGTGGTTTTCCA-TATCCATAGTTTGATTCAAATCC---AAAA----TAAAAACAAAAAA
gi|11 : TTTCTACTCATGTATAATGCACT----T----ATT---TTATTCCTCA--TTTTAAT-AT-CT------TT-G-GAAGG-TATA-CACATTATAA--------GCAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TCA-A----GGT-AA-TTTGTCCAAG--AAAGGTTGATTTAGA----GA-TGTT-TTTG--AGAAG--TATATGTGCAGATTTTAATTTctggtatttttttacgattcaagagc
gi|12 : caTTTCTGCTCACGTATTAGTCGCG----C----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------TTTT-C-ATTTTTT-------------TTTTTT----T---A----TGT-AA-ATTTT--------TTTATT
gi|13 : gTTTCTACTCACGTATTATGCAGG----T----TTT---TTT--CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCTATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGC-AA-ATTTTCtccgataatttcccatgtatattttaaaag
gi|14 : gTTTCTACTCACGTATTATGCGCG----T----TTT---TT---CCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-CAA----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTtatttttgttaatttcccatgtatattttaaaag
gi|15 : gTTCTGCTCACGTATTATGCGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CT------TC-AATAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTCttatttccgataatttcccatgtatattttaaaag
gi|16 : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTCtatttccgataatttcccatgtatattttaaaaga
gi|17 : cgTTTTTACTCCCGTATAAGGCGCA----T----TTT---TTTTTC---AACTTTTAAG-AT--T------TC-GAGAACG-GATG-CGCGATATAC--------ATAAGTACAGACG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TAT-AA-ATTTTCtatttccgataatttcccatgtatattttaaaa
gi|18 : gTTTCTACTCATGTATTAGGCGCG----T----TTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-TGCGATATAC--------ATAAGTATAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTtatttccgataatttcccatgtatattttaaaa
gi|19 : aTTTCTACTC-TGTATTAGGCGCA----T----TTT---TTTTTTC--AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTttatttccgataatttcccatgtatattttaaaa
gi|2 : TATTTATTATATATGC---A----ATACAAATTGTCAAATAAAT-CGAGAAGTAGCAAAGTGTTTAC----T--------ATTCTTTTCCCTT------GT-AGCCGAAAA-----T------GTT------------------------CAGAATGG-TT-ACAGT-AAGGTAAAAGTAATATTGACGAATGC---AGAATA---A---ATGCA-ACACTGTTGTCATCGTA-AA-TGTAT-T-TCATTTACTTTTTTTTTGTTTTTG-----TTAA--TACG----GTTTAT----T-GTTTTTGTAAAACTTACAAAATAAACTCTATATAATATGTGGTGTTTCATTGTAAATGGTTTTA---AAATACTTT----CTTCTAAAttatttccgataatttcccatgtatattttaaa
gi|20 : TCAAGTATTAGGCGCG----G----CTT---TTTTCC---AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAG--------ATAAGTAAAGAAG--------ATTT-C-A----TA-------------TTTTTT----T---A----TGT-AA-ATTTTCcttaaagtagtaagagttactaaataattaaaagcaatgaaaaggacttctcccactatactaaactgtgatctgcttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtcctctatcatttcgcggtattgacgttggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatcgcttctcaataatatttattgatgagttactgtaccaatctactg
gi|21 : TTTCTGCTCACGTATTAGGTGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CTAGATCTTC-GAGAAGG-GATG-CGCGATATAC--------ATAA-TACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTtatttccgataatttcacatgtatattttaaaag
gi|22 : CAACTTTTAAG-AT-CT------TG-GAGAAGT-GATG-TGCATTATAA--------ACAAGAACAGAAG--------ATTT-T-G----TT-------------TTTGTT----T--------TGT-----TTTTCAAGGTTATTTGTTAA---AGA----GC-AGGC------AAGATCCAGATATGTTTTGATGttatttccgataatat
gi|23 : tgttAACTTTTAAA-AT-CT------TC-GAGAAGA-GATG-CACGATATAT--------ATAAATGCAGAAG--------ATTT-C-A-----T-------------TTTTTT----T---A----TGT-AA-ATTTTC
gi|24 : tcaCTCATGTATTAGGCGCG----A----TTT---TTT---CCCAACTTCTGAGTAT-GTA-----TT-GAGAAAGTGATGTTGCGACAGAC--------tatttccgattttcccatgtatat
gi|25 : tTCTCTACTCATGTATTGTGCACA----T----TTT---TT---CCCCAACTTTAAGG-AT-TT------TCAAAGAAGgattcggaatgagatttc
gi|27 : ccaTTTTCCCCAACTTTTAAG-ATACT------CC-GA-AAGA-AATG-CACATTATAT--------GCTAGTACTTAAG--------ATTTCC-A----TT-------------TTTATT----C---A----atacagactgtgtatagggatcat
gi|28 : aTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGGTATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTa
gi|3 : TTTATTCTCATGTATTAGGTGTG----C----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTAGAGAAG--------ATTT-C-A----TT-------------TTTTTC----T---A----TGT--A-ATTTTCAAAG--ATTTATTGATTCAGA----AA-AGAT-TTTGCTACACC--AGTATGTTCTGATATTAATTTC-AGGACAATTTCTTCATGT-GAGCTCAGTT-ATAGGTGATGATTTACATA-GCAGAGAATGTTGTATTCAAATTCAGTCCTTATACATTATATATGT---A----AAACA---TGTCAAATAAAT-CGAAAAATAAGAAAGTG-TTAC-------------A----------TT------GT-GACCAGAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTTGTTT-AC-GTAAAGGTGAAAGT-GTATGGACAAATGC---AG---A---A---ATGCA-ATACTGTTAT-AGCATA-AA-TGT-T-T-TTATTCACACATAAAT--CTTTTA-----TTGG--TGAG----GTTTG--TAGTAGTTTATGT-----TTATAAAATAAAATCAATATAATATGTGGTATTTCGTT----ATGATTAAA---AAATATTGTAAGATTTTTAAAAAAAAAAAAtta
gi|30 : -GAGATTGATTTAT-GATTATGATTCAACTA-CCGAAGAACCTTTTATTCAA----AGTCCATATtgactgtgtac
gi|31 : TTCTACTCACGTATTAGGCACG----T----TTT---TTTT---CCAACTTTTAAG-AT-CT------TC-GAGAA
gi|4 : A--------AAATGT--C----CAGAGTGGTT--ACAGTAA-GGTAAAAGT-ATATTGACGAATGC---AG---A---ATAAATGCA-ACACTGATGTCATCGTA-AA-TGTGT-T-TCATTTACA--TTTTT--TTTTTA-----TTAA--TACG----GTTTAT-TA----TTTTTGTAAAACTTACAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATTGTTTTA---AAATACTTT----TTTCCAAAa
gi|5 : tttcccttgtagccaTTTCTTTTCATGTTTAAAGTGCA----TA---TTT---TTTTTCC--AACTTTTAAG-AT-CT------T-----------AT-------TACAC--------AAAAATACAGA-----------TTT-C-A----CT-------------TTTTTTCCCCT---A----AGG-TA-ATTTTTAAAG--ATTGACTGAGACACA----GACATAT-TTTG-GAGTCT--GGTATGTTCAGATGTTAAT------GACAATATCTATAAAAAGAGATCGATA-ACAGATGACGACTTATCTA-GTGGAGAACCTTTTATTCAAATTCAGTCTATATTCATTACGTATGCAGTA--T-AAAT----TATCAAATAAAT-CAAGAAGTATCGAAGTGTTTGC----TAA------A----------TTCC----AT-TACAGAAAC-----TTGAAATGTTCTA--------AAATAG-------CAGACTGG-TT-ACAGT-AAGATGGAAAT-G-------AAA------AG---A---A---AGCCAGATACTGTAGCTATTTTA-GA-GGTGG-TATTGTTTcttaaagtagtaagagttactaaataattaaaagcaatcaaaaggacttctcccactatactaaactgtgatctatttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtccgctatcatttcgcggtattgacattggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatggcttctcaataatatttactgatgagttactgtaccaatctactg
gi|6 : ccaT-TTTG--AGAAC--AGCTTGTTCAGATGTT--TTTCCAGAACAGTTTCTTTATCA-GAGATTGATT-ATAGATGATGATTTAC------GGAGAACCTTTTATTCAAATCCAGTCCATATTCATTATATATGC---A--G-TAACAAC-TATCAAACAAATCCAAGAAGTATC-AATCTTTTA--------------A----------AT------GTAAACTTGAAAGAGGCTAG-AATGTTCTATTTTCTATAAATAA--C---GTAGACTGGTTTGACGG-AAAGGCGGTTGT-TTATTGGTGAATGT---GG---AATCA---ATGCA-ATACTGTTGTCATCATA-AA-TATATAT-TTATTTACACATATTC--CTTTTA-----CGGG--TATG----GTTTAT-TGGT-GTTCATTT-----CTATAAAATAAACTgaaaca
gi|7 : gagatttTTTATCCTCACGTATTATGCGTG----TGTTTTTTGGGTTTTTTTCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CACGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAAA-ATTTTCAAAG--ATTTATCAATTCAGA----AA-AAGT-TTTG-TACACC--GGTATGTTCAGATATTAATTTC-AGGACAATTTCTTCATGT-GAGTTCGATT-ATAG-TGATGATTTACCTA-GCGGAGAATGTCTT-TTCAAATTCAGTGCTTATACATTATATATGC---AG-TAAAACA---TGTCAAATAAAT-CAAAAAATAA--GAGTGTTTACTGCTT--------A----------TTTATGTCGT-GACTGGAAA-----T---AACATT-TA--------AAATAGAACAGAACAGACTGGTTT-AC-GTAAAGGTGAAAGT-GTAacctgtctagatgtagaatatcttaaaaagaaattgaa
gi|8 : gCTCACGTATTAGGCGTG----T----TTT---TTT----CCAAATTTTAAG-AT-CT------TC-GAGAAGG-AATG-CAGGATATACATACAGATATAAGTACAGA----------TTTT-C-A----TTTTTTTTTTTTTTTTTTTTT----T---A----AGT-AA-TTTTTCAAAG--ATTTATTAATTCAGA----AA-AGAT-TTTGCTACACT--GGTATGTTCAGATATTAATTTC-AAGACAAT
gi|8 : attAATAAAT-CGAAAAATAAGGAAGTGTTTAC----T--------GATTATTTACGTT------GT-GACCAAAAA-----T---AACATT-TA--------AAATAG--C---ACAGACTGGTTA-AT-GTAAAGGTGAAAGT-GTATCGACGAATGC---AGAATA---A---ATGCA-AAACTGTTATCGTCATA-AACTGTaaatcgaaaaataaggaagtgtttactgattatttacgttgtgaccaaaaataacatttaaaatagcacagactggttaatgtaaaggtgaaagtgtatcgacgaatgcagaataaatgcaaaactgttatcgtcataaactgtt
gi|9 : attctcacgtattaggcgtgtttttttccaaattttaagatcttcgagaaggaatgcaggatatacatacagatataagtacagattttcattttttttttttttttttttttaagtaatttttcaaagatttattaattcagaaaagattttgctacactggtatgttcagatattaatttcaagacTTTCCATTCAAGTATTAAGTGTGCATAT----TTT---TTTTCA---AACTTCTAGG-AT-CT------TC-AAt
gi|9 : tacca-A----TT-------------TTTTTT----C---AAACTTCT-AGGATCTTCAAAG--ATTGATCAGTCT-------GA-ACATGTTTG-GAGACT--GGTAT------------ATTTT-AGGACAATTTCTTTATGG-GAGATATGTA-ATAGATCATGATTTATCTA-AGGGAGAACATTTTATTCATATTCAGTCTATATTCATTATATGTGC---AT-T-AAAAA---T------TAAAT----GAAGTATCGAagattgatcagtctgaacatgtttggagactggtatattttaggacaatttctttatgggagatatgtaatagatcatgatttatctaagggagaacattttattcatattcagtctatattcattatatgtgcattaaaaattaaatgaagtatcga
blockSeqs : CATA GTTT GGG TTCCTC T A AGATCT A T T ATACAGAT . C A TTTT TTTTTTTTTTTTT CCCC CA AACT A G TT G TTT . C G G CT CA A C AA T A . AGTAT AAAT G C G GCA TATTCTTTTCCCTT AA GAGGCTAGAATGTTCTATTTTCTAT AACAGAA T TG A A A . AATAA G G . C A A A TT T TG . . C . TAGTA T AAAAC T T GTAA T . TGTAAGAT A
blockSeqs : . A . TTCCCC . . A . . . . . . . T . . TA . . . . T TTC . . G . CT . T . T . C . AGTA AAC G . G AGA TGCTTATTTATGTC A TTGAAATGTTCTA CA T T A A . . AATAA . A . . G . . CA A . . . A . TTGGT A AAAAC A T GTAA A . TTTC
blockSeqs : . . . TCCCCC . . . . . . . . . . T . . TA . . . . T GAC . . G . A . T . A . C . ATT A A . A TCG TGATTATTTACGTT G TAACATTTA CG T T A A . . AATCA . G . . G . . CA T . . . C . TTA T . T T . T . TTTT
blockSeqs : . . . TTTTCC . . . . . . . . . . T . . TA . . . . T TTC . . T . G . A . T . C . AG A A . A AGG TAAATTCC T TAACATTTA CA T T G A . . AATAA . T . . A . . . A . . . T . TT A .
blockSeqs : . . . CCCC . . . . . . . . . . . . . TA . . . . G TTC . . A . T . A . G . C . A A G . A TCG ATT G TAACATTTA C T T . A . . AA . A . . . . .
blockSeqs : . . . CCCC . . . . . . . . . . . . . TA . . . . T TCT . . G . G . A . . . . A . . . G TC AAT G TGTT . . A . . . . AA . A . .
blockSeqs : . . . TCCC . . . . . . . . . . . . . . . . . . T . . . C . . . A . . A . . . . . .
blockSeqs : . . . TTTC . . . . . . . . . . . . . . . . . . G . . . .
blockSeqs : . . . TCCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . CCCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TTCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TTC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . CCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCC . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCA . . . . . . . . . . . . . . . . .
blockSeqs : CC . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : TCCC** ******** *** **** AGTA**** NCG TANTATTTTT********************** TAACATTTA***************** *** AATAA****** ***** ** **** TTG****
originalCons : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCCCCAACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGC---A--T-AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTAC----T--------A----------TT------GT-GACCGGAAA-----T---AACGTT-TA--------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AG---A---A---ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTAT-TAGT-GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
finalCons : TTTCTACTCACGTATTAGGCGCG----T----TTT---TTTTCCC--AACTTTTAAG-AT-CT------TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGCAGTA----AAACA---TGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTACTANTATTTTT----------------------GT-GACCGGAAATAACATTTA-----------------AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGC---AGAATAA------ATGCA-ATACTGTTGTCATCGTA-AA-TGTAT-T-TTATTTACACATATTT--CTTTTA-----TTAG--TACG----GTTTATTG----GTTTNTGTAAAACTTATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTGCAAAATTTTAGGTACCATTACGGTAACTAATAATTTAAAGCAATCAACACGAGACTTGTCCCGCTAACAATCAATTGTGGCCAGTCATAATTAAATCTGGCTCAAACTCTAACTTAGGTAGGTATTTAAAATCAAACATATGTGCCAAGTGTCAGCTGTCATTTCACGGTATTAAA
Unaligned ( gi|26 ): TACACTGATAATTTAAAGAACATGATTTTTTTTTATGTAAATTTTCTATTTCCGATAATTTCCCATGTATATTTTAAAA
Unaligned ( gi|29 ): ATTCTTCTCATATATAAGGCTCATATATTTCCCTTTTTAGATATTGGAAAAGGAATGCGCATTATATACAAGT
Unaligned ( gi|32 ): TTACAATAATTTCCCATGTATATTTTAAAAG
Alignments
lowQualScore : 111111 1111111111111 111 1111 1 11 11 666666666666666666666666 111111 22222 2222222 11 1111 11 222222222 1111 1111 33333 111 33333333
lowQualScore : 111111 333 1 6666 444444 1 1 1 1 1 1 66666666 77777777 4 1 9999 0000000000000 4444 999 4444 2 2 66 1 333 0000 0 1 4 88 0 66 1 0 0 5 66 0 0 5 0 7 5 0 555 99 1 5 1 888 666666666666666666666666 5 888888 00000 5 0000000 3 11 0000 5 0 0 6 6 3 8 44 1 11 444444444 1 7777 9999 0 1 66666 8 9 0 3 9999 0 1 777 88888888 0 1
lowQualScore : ...... ... . .... ...... . . . . . . ........ ........ . . .... ............. .... ... .... . . .. . ... .... . . . .. . .. . . . . .. . . . . . . . ... .. . . . ... ........................ . ...... ..... . ....... . .. .... . . . . . . . .. . .. ......... . .... .... . . ..... . . . . .... . . ... ........ . .
lowQualScore : 222222 555 9 7777 888888 7 7 7 7 9 9 99999999 22222222 0 9 8888 5555555555555 0000 000 0000 0 0 11 7 222 6666 0 4 4 66 1 11 1 9 1 7 77 3 4 7 1 9 7 7 999 00 7 0 1 999 333333333333333333333333 7 333333 99999 0 0000000 2 55 4444 0 3 7 7 7 8 0 22 4 00 444444444 4 0000 6666 6 0 22222 0 8 2 2 5555 2 0 555 22222222 2 0
consensus : TTTCTACTCACGTATTAGGCGCGT------T---TTTT-TTCC-C--AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGCAGTA-A-AACATGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTACT-A-TT--AT---TT----TC---GTGACCGGAA-AT---AACGTT---T-A-AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGCGGAATAAATGCAATACTGTTGTCATCGTA-AA-TGTAT-TTTATTTACACATATTT--CTTTTATT-----AG--TACG----GTTTATA-TAGTTTTTGTAAAACT-TATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
Reference ( family-2833 ) : TTTCTACTCACGTATTAGGCGCGT------T---TTTT-TTCC-C--AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTCAAAG--ATTTATTGATTCAGA----GA-AGAT-TTTG-NAGACC--GGTATGTTCAGATGTTAATTTC-AGGACAATTTCTTTATGN-GAGATCGATT-ATAGATGATGATTTACCTA-GCGGAGAACCTTTTATTCAAATTCAGTCCATATTCATTATATATGCAGTA-A-AACATGTCAAATAAAT-CGAGAAGTANCGAAGTGTTTACT-A-NT--AT---TT----TT---GTGACCGGAA-AT---AACATT---T-A-AAATAG--C---ACAGACTGGTTT-ACGGTAAAGGTGAAAGT-GTATTGACGAATGCAGAATAAATGCAATACTGTTGTCATCGTA-AA-TGTAT-TTTATTTACACATATTT--CTTTTATT-----AG--TACG----GTTTAT--TGGTTTNTGTAAAACT-TATAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATGGTTTNA---AAATACTTTAAGATTTCTAAAAANAAAAAA
gi|1 : TTTCTTCTCATGTATAAAGCACAT------T---TTCC---CT-C--AACTTTTA------AG-AT-CT-TA-GAGAATG-GATG-CACATTATAC--------ACAAGTATAGAAGCAAAGGAGATTTTC-A----CT-------------TTTTTT----CCCAA----GGT-AA-TTTGTTAAAG--AT--A--GACCGAGATACTGATATAT-TTTG-GAGAAC--TTTATGTTTGGATGTTATTTTC-AGAACGATTTCTTTACGA-GAGGTTGATT-ATAGATAATGACTTAC-TATGCGGAAAACCATTTATCTAAATTCATTCCATATTCATTACATATGTAGTC-A-AAGTTGTTAAATAAAT-CAAGAAGAATCA---TGTTTACT-A-TTCCAC---GA----TT---GTTACCGGAA-AT---A---TT---CCA-AAATAG--C---ACA-ACTGGTT--ACGATTCAG-TGAAAGT-GTATTGATGAATGTGAAATAAATGCAATACTGTTGTCATCATAGAA-TGTAT-TTTTTTGACACATATTT--CTTTTGTTTATTTAGATTATATTTTGTTTATA-TAGTGTTTGTG---TT-TATAAAATAAACCC--TATGATATGTGGTTTTCCA-TATCCATAGTTTGATTCAAATCC---AAAA----TAAAAACAAAAAA
gi|11 : TTTCTACTCATGTATAATGCACTT------A---TTTTATTCCTC--A--TTTTA------AT-AT-CT-TT-G-GAAGG-TATA-CACATTATAA--------GCAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TCA-A----GGT-AA-TTTGTCCAAG--AAAGGTTGATTTAGA----GA-TGTT-TTTG--AGAAG--TATATGTGCAGATTTTAATTTctggtatttttttacgattcaagagc
gi|12 : caTTTCTGCTCACGTATTAGTCGCGC------T---TTTT-TTCC----AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------TTTT-C-ATTTTTT-------------TTTTTT----T---A----TGT-AA-ATTTT--------TTTATT
gi|13 : gTTTCTACTCACGTATTATGCAGGT------T---TTTT-TCCC-C--AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCTATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGC-AA-ATTTTCtccgataatttcccatgtatattttaaaag
gi|14 : gTTTCTACTCACGTATTATGCGCGT------T---TTTT-C-CC-C--AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-CAA----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTtatttttgttaatttcccatgtatattttaaaag
gi|15 : gTTCTGCTCACGTATTATGCGCGT------T---TTTT-TTCC-C--AACTTTTA------AG-AT-CT-TC-AATAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-T----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTCttatttccgataatttcccatgtatattttaaaag
gi|16 : TTTCTACTCACGTATTAGGCGCGT------T---TTTT-TTCC----AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGTGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TGT-AA-ATTTTCtatttccgataatttcccatgtatattttaaaaga
gi|17 : cgTTTTTACTCCCGTATAAGGCGCAT------T---TTTT-TTTC----AACTTTTA------AG-AT--T-TC-GAGAACG-GATG-CGCGATATAC--------ATAAGTACAGACG--------ATTT-C-A----TT-------------TTTTTT----TTA-A----TAT-AA-ATTTTCtatttccgataatttcccatgtatattttaaaa
gi|18 : gTTTCTACTCATGTATTAGGCGCGT------T---TTTT-TTCC----AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-TGCGATATAC--------ATAAGTATAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTtatttccgataatttcccatgtatattttaaaa
gi|19 : aTTTCTACTC-TGTATTAGGCGCAT------T---TTTT-TTTT-C--AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTttatttccgataatttcccatgtatattttaaaa
gi|2 : TATTTATTATATATGCAATA-C-AAATTGTCAAATAAAT-CGAGAAGTAGCAAAGTGTTTACT-A-TT--CT---TTTCCCTT---GTAGCCGAAA-AT------GTT--------------------CAGAATGG-TT-ACAGT-AAGGTAAAAGTAATATTGACGAATGCAGAATAAATGCAACACTGTTGTCATCGTA-AA-TGTAT-TTCATTTACTTTTTTTTTGTTTTTGTT-----AA--TACG----GTTTAT--T-GTTTTTGTAAAACT-TACAAAATAAACTCTATATAATATGTGGTGTTTCATTGTAAATGGTTTTA---AAATACTTT----CTTCTAAAttatttccgataatttcccatgtatattttaaa
gi|20 : TCAAGTATTAGGCGCGG------C---TTTT-TTCC----AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAG--------ATAAGTAAAGAAG--------ATTT-C-A----TA-------------TTTTTT----T---A----TGT-AA-ATTTTCcttaaagtagtaagagttactaaataattaaaagcaatgaaaaggacttctcccactatactaaactgtgatctgcttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtcctctatcatttcgcggtattgacgttggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatcgcttctcaataatatttattgatgagttactgtaccaatctactg
gi|21 : TTTCTGCTCACGTATTAGGTGCGT------T---TTTT-TTCC-C--AACTTTTAAGATCTAG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAC--------ATAA-TACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGT-AA-ATTTTtatttccgataatttcacatgtatattttaaaag
gi|22 : -C--AACTTTTA------AG-AT-CT-TG-GAGAAGT-GATG-TGCATTATAA--------ACAAGAACAGAAG--------ATTT-T-G----TT-------------TTTGTT----T--------TGT-----TTTTCAAGGTTATTTGTTAA---AGA----GC-AGGC------AAGATCCAGATATGTTTTGATGttatttccgataatat
gi|23 : tgtt--AACTTTTA------AA-AT-CT-TC-GAGAAGA-GATG-CACGATATAT--------ATAAATGCAGAAG--------ATTT-C-A-----T-------------TTTTTT----T---A----TGT-AA-ATTTTC
gi|24 : tcaCTCATGTATTAGGCGCG-------A---TTTT-TTCC-C--AACTTCTG------AGTAT-GTATT-GAGAAAGTGATGTTGCGACAGAC--------tatttccgattttcccatgtatat
gi|25 : tTCTCTACTCATGTATTGTGCACA-------T---TTTT-TCCC-C--AACTTTAA------GG-AT-TT-TCAAAGAAGgattcggaatgagatttc
gi|27 : ccaTTT-TCCC-C--AACTTTTA------AG-ATACT-CC-GA-AAGA-AATG-CACATTATAT--------GCTAGTACTTAAG--------ATTTCC-A----TT-------------TTTATT----C---A----atacagactgtgtatagggatcat
gi|28 : aTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGGTATAC--------ATAAGTACAGAAG--------ATTT-C-AT---TT-------------TTTTTT----T---A----TGT-AA-ATTTTa
gi|3 : TTTATTCTCATGTATTAGGTGTGC------T---TTTT-TTCC-CCCAACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CGCGATATAC--------ATAAGTAGAGAAG--------ATTT-C-A----TT-------------TTTTTC----T---A----TGT--A-ATTTTCAAAG--ATTTATTGATTCAGA----AA-AGAT-TTTGCTACACC--AGTATGTTCTGATATTAATTTC-AGGACAATTTCTTCATGT-GAGCTCAGTT-ATAGGTGATGATTTACATA-GCAGAGAATGTTGTATTCAAATTCAGTCCTTATACATTATATAT---GTA-A-AACATGTCAAATAAAT-CGAAAAATAAGAAAGTG-TTAC--A----------------TT---GTGACCAGAA-AT---AACATT---T-A-AAATAG--C---ACAGACTTGTTT-AC-GTAAAGGTGAAAGT-GTATGGACAAATGCAG---AAATGCAATACTGTTAT-AGCATA-AA-TGT-T-TTTATTCACACATAAAT--CTTTTATT-----GG--TGAG----GTTTGTAGTAGTTTATGT-----T-TATAAAATAAAATCAATATAATATGTGGTATTTCGTT----ATGATTAAA---AAATATTGTAAGATTTTTAAAAAAAAAAAAtta
gi|30 : -GAGATTGATTTAT-GATTATGATTCAACTA-CCGAAGAACCTTTTATTCAA----AGTCCATATtgactgtgtac
gi|31 : TTCTACTCACGTATTAGGCACGT------T---TTTT-TT-C-C--AACTTTTA------AG-AT-CT-TC-GAGAA
gi|4 : -A-AAATGT--C----CAGAGTGGTT--ACAGTAA-GGTAAAAGT-ATATTGACGAATGCAGAATAAATGCAACACTGATGTCATCGTA-AA-TGTGT-TTCATTTACA--TTTTT--TTTTTATT-----AA--TACG----GTTTAT--TA-TTTTTGTAAAACT-TACAAAATAAACTCTATATGATATGTGGTGTTTCATTGTAAATTGTTTTA---AAATACTTT----TTTCCAAAa
gi|5 : tttcccttgtagccaTTTCTTTTCATGTTTAAAGTGCATA-----T---TTTT-TTTC-C--AACTTTTA------AG-AT-CT-T-----------AT-------TACAC--------AAAAATACAGA-----------TTT-C-A----CT-------------TTTTTTCCCCT---A----AGG-TA-ATTTTTAAAG--ATTGACTGAGACACA----GACATAT-TTTG-GAGTCT--GGTATGTTCAGATGTTAAT------GACAATATCTATAAAAAGAGATCGATA-ACAGATGACGACTTATCTA-GTGGAGAACCTTTTATTCAAATTCAGTCTATATTCATTACGTATGCAGTATA-AAT-TATCAAATAAAT-CAAGAAGTATCGAAGTGTTTGCT-A-----AA---TT----CC---ATTACAGAAA-CTTGAAATGTTC--T-A-AAATAG-------CAGACTGG-TT-ACAGT-AAGATGGAAAT-Gcttaaagtagtaagagttactaaataattaaaagcaatcaaaaggacttctcccactatactaaactgtgatctatttgctcaaaatctaaattaggtagatatggtatgtaaaaacaaacaaacatgtgtgcaaatgtccgctatcatttcgcggtattgacattggcttctttcatctctcaacgtaaatttagcgagtgctgacgtatggcttctcaataatatttactgatgagttactgtaccaatctactg
gi|6 : ccaT-TTTG--AGAAC--AGCTTGTTCAGATGTT--TTTCCAGAACAGTTTCTTTATCA-GAGATTGATT-ATAGATGATGATTTAC------GGAGAACCTTTTATTCAAATCCAGTCCATATTCATTATATATGCAGTA-ACAAC-TATCAAACAAATCCAAGAAGTATC-AATCTTTTA---A-AT--GTAAACT----TGAAAGAGGCTAGAATGT---TCTATTTTCT-ATAAATAA--C---GTAGACTGGTTTGACGG-AAAGGCGGTTGT-TTATTGGTGAATGTGGAATCAATGCAATACTGTTGTCATCATA-AA-TATATATTTATTTACACATATTC--CTTTTACG-----GG--TATG----GTTTAT--TGGTGTTCAT----TTCTATAAAATAAACTaaaagaaagccagatactgtagctattttagaggtggtattgtttgaaaca
gi|7 : gagatttTTTATCCTCACGTATTATGCGTGTGTTTTTTGGGTTTT-TTTC-C--AACTTTTA------AG-AT-CT-TC-GAGAAGG-GATG-CACGATATAC--------ATAAGTACAGAAG--------ATTT-C-A----TT-------------TTTTTT----T---A----TGTAAA-ATTTTCAAAG--ATTTATCAATTCAGA----AA-AAGT-TTTG-TACACC--GGTATGTTCAGATATTAATTTC-AGGACAATTTCTTCATGT-GAGTTCGATT-ATAG-TGATGATTTACCTA-GCGGAGAATGTCTT-TTCAAATTCAGTGCTTATACATTATATATGCAGTA-A-AACATGTCAAATAAAT-CAAAAAATAA--GAGTGTTTACT-GCTT--AT---TTATG-TC---GTGACTGGAA-AT---AACATT---T-A-AAATAGAACAGAACAGACTGGTTT-AC-GTAAAGGTGAAAGT-GTAacctgtctagatgtagaatatcttaaaaagaaattgaa
gi|8 : gCTCACGTATTAGGCGTGT------T---TTTT-T--C-C--AAATTTTA------AG-AT-CT-TC-GAGAAGG-AATG-CAGGATATACATACAGATATAAGTACAGA----------TTTT-C-A----TTTTTTTTTTTTTTTTTTTTT----T---A----AGT-AA-TTTTTCAAAG--ATTTATTAATTCAGA----AA-AGAT-TTTGCTACACT--GGTATGTTCAGATATTAATTTC-AAGACAAT
gi|8 : attAATAAAT-CGAAAAATAAGGAAGTGTTTACTGA-TT--AT---TTACG-TT---GTGACCAAAA-AT---AACATT---T-A-AAATAG--C---ACAGACTGGTTA-ATG-TAAAGGTGAAAGT-GTATCGACGAATGCAGAATAAATGCAAAACTGTTATCGTCATA-AACTGTaaatcgaaaaataaggaagtgtttactgattatttacgttgtgaccaaaaataacatttaaaatagcacagactggttaatgtaaaggtgaaagtgtatcgacgaatgcagaataaatgcaaaactgttatcgtcataaactgtt
gi|9 : attctcacgtattaggcgtgtttttttccaaattttaagatcttcgagaaggaatgcaggatatacatacagatataagtacagattttcattttttttttttttttttttttaagtaatttttcaaagatttattaattcagaaaagattttgctacactggtatgttcagatattaatttcaagacTTTCCATTCAAGTATTAAGTGTGCATA---T---TTTT-TTTC-A--AACTTCTA------GG-AT-CT-TC-AAt
gi|9 : tacca-A----TT-------------TTTTTT----C---AAACTTCT-AGGATCTTCAAAG--ATTGATCAGTCT-------GA-ACATGTTTG-GAGACT--GGTAT------------ATTTT-AGGACAATTTCTTTATGG-GAGATATGTA-ATAGATCATGATTTATCTA-AGGGAGAACATTTTATTCATATTCAGTCTATATTCATTATATGTGCATTA-A-AA-AT------TAAAT----GAAGTATCGAagattgatcagtctgaacatgtttggagactggtatattttaggacaatttctttatgggagatatgtaatagatcatgatttatctaagggagaacattttattcatattcagtctatattcattatatgtgcattaaaaattaaatgaagtatcga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTGCAAAATTTTAGGTACCATTACGGTAACTAATAATTTAAAGCAATCAACACGAGACTTGTCCCGCTAACAATCAATTGTGGCCAGTCATAATTAAATCTGGCTCAAACTCTAACTTAGGTAGGTATTTAAAATCAAACATATGTGCCAAGTGTCAGCTGTCATTTCACGGTATTAAA
Unaligned ( gi|26 ): TACACTGATAATTTAAAGAACATGATTTTTTTTTATGTAAATTTTCTATTTCCGATAATTTCCCATGTATATTTTAAAA
Unaligned ( gi|29 ): ATTCTTCTCATATATAAGGCTCATATATTTCCCTTTTTAGATATTGGAAAAGGAATGCGCATTATATACAAGT
Unaligned ( gi|32 ): TTACAATAATTTCCCATGTATATTTTAAAAG