lowQualScore : 111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 1 444444444444444 22222 1 1 1 1 11111 111 1 1 2222222222222 3 1 111111111111111111111111111111111 3333333 1 1111 11111111111111111111111111111111111111111111111111111 11 44444 1111 1 1 333333
lowQualScore : 3 2 2 1 99 3 6 3 0 00 77 0 3 555555555555555 6 00000 77 5 0 3 66 7 1 0 77777 777 2 77 77 2 6 2 4 0 5 9 8888888888888 66 0 66 5 4 2 44 3 000000000000000000000000000000000 2222222 0 0 6 2222 11111111111111111111111111111111111111111111111111111 66 66 00000 9999 5 5 66 6 222222 5 3 6
lowQualScore : . . . . .. . . . . .. .. . . ............... . ..... .. . . . .. . . . ..... ... . .. .. . . . . . . . ............. .. . .. . . . .. . ................................. ....... . . . .... ..................................................... .. .. ..... .... . . .. . ...... . . .
lowQualScore : 2 8 7 0 22 2 0 5 3 88 77 8 5 888888888888888 0 00000 66 7 8 7 22 0 0 7 88888 555 2 99 99 2 7 5 1 5 9 4 8888888888888 99 0 99 0 1 3 22 5 888888888888888888888888888888888 5555555 0 2 0 1111 66666666666666666666666666666666666666666666666666666 88 99 88888 4444 0 4 99 7 000000 7 0 0
consensus : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATAACAACATAAC-TTGGAAAAACCATGTAGATCAT----ATA------TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCNCATANAGATTACTGTAATGTTATATGGGGNGGCACCTGTCAAACGAACC--TAAATAGA--AT-NTTTAGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAGTT--AAAAATA--CTAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTCCAATAA---CAG------CCTANCACATCAATG-------AAATGTTTAACTTCAGACAAACAAATAAAAATGCACCTGTAACACGGTCAAATTCTTCAA----ACA-----AC--------AT----C---------------A---------A----ACCGAACAAAGAAATATTTAAACAA--AGTCT-ACACATACTC-TGG-TCCAATAATATGGAACAA--TCTACCAGAAAATATCAA--A-GAAAA-ACTTCTGTAATGG
Reference ( gi|1 ) : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATCTATTAATAACAACATAAT-TTCGAAAAATCATGTATATC------ATA------TGTAAAATAAATCCATG-----AAACATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGATTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATAACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACC--AAGATAGA--AT-TTTAAGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAGTT--AAAAA-A--CTAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTCCAATAACCTCAG------CCGAA---ATCAATG-------AAATGTTTTACTTCAGACAAACAAATAAAAATACACCTGTAACACGGTCAAATTCTTCAA----ACA-----AC--------AT----C---------------A---------A----ACCGAACAAAGAATTATTTAAACAA--AGTAT-ATATATA-TT-TGG-TCCAATAAAATGGAATAA--TCTTCCAGAAAATATCAA--A-ATAAA-ACTTTTGTAATAG
gi|2 : CACATCAAAAACGTACTTGTTTAGATATCAAAGATATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTAATGACAACATAAT-TTGGAAAAATCATGTAGATC------ATA------TGTAAAATAAATCCATG-----AAAAATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGGCCATAGAGTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATTACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACC--AAGATAGA--AT-TTTAAGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAGTTTAAAAAA-A--CTAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC
gi|5 : CACATCAAAAACATACTTGTTTAGATTTGAAAGACATAAATTTGGATCTTAATAGTGAAAATTTCAGCATGATATCTAAGGATAAA--GTACTTGGCATATTTATTGATTACAACATAAC-TTGGAAAAACCATGTAGATCAT----ATA------TGTAAAATAAATTCATG-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGAGTTCAGATTTATAAAGCTTATATTCAACCTCATGTAGATTTCTGTAATGTTAAATAGGGCGGCACCTGTC-AATGAACC--TAGATAGA--AT-ATTAAGGCTCCAAAAA-CGTGCTTGTAAAATCATCTTGGATAACAATGATTAAAATACAC------------TAGAAAGCTTGCAGGAGTT--AAAAATA--CTAACAGT-TTTTGACAG
gi|9 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTGATGACAACATAAC-TTGAAAAAATCATGTAGATCAT----ATA------TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCTTTGACCATAAAGTTCAGTTTT
gi|8 : CACATCAAAAGAG-ATTT--TTGGATGTAAAAGATTTAAACCTGGATCTAAATGGTCACAATGTTAGCATGACCTC-------AAATCGTACTTGGTAAATTTACTGACACT--TATAATATTCTAGTAATAACCTAC-CC---------------TGCAAAACAA--CCATGTCATCAAATGTTTGGCTTCTATCAAAAATAAAGCAGTATTTAAGTCCCAAATATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATATAGATTACTGTAATGTTATATGGCGAGGCACCTCTCAAACTAACTTAAATATAGG--AT-T
gi|19 : TGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATc
gi|20 : TAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGAT
gi|12 : TATCTCAAGATAAA--GTAC-----ATATTTATTGATAACAG--TTAC-TTGGAAAAACCATGAAGATC------ATAATTATATGTAAAACGATTTCATT-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTACCCTCGACCATATAGTTCAG
gi|17 : TCTAAAGATAAA--GTA-----CATATTTATTGATAACA--GTAAC-TTGGAAAAACCATGTAGATCATAATTATA------TGTAAAA
gi|3 : ATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATAAAGATTACTTAAATGTTATATGGCGAGGTACCTCTCAAACTAACT--TAAATATACTAT-TTC--GGCTCCCAACA-GGT--TTGTAGAATTATTCTAGATTATGATGTTTAAGGTTCTT------------TAGAGAGAATGCAGGTTTT--AAAAATG--TTAACAAT-ATTTGACAGAGTATATCTCAAGAAAGCAAAATATATGCACAAAA-------ATTCAATA---TCAGTTACTCCCTAACATACCAATG-------AATGGTTAAATTTTAGACAAATAAATGAAAATGAGCCTGTAACACGGTCAGTTACTTCAA----ACAATTTTAC--------ATTACCC---------------A---------G----CCCAAAGAAAGACATATTTAAACAA--AGTTTGACATAT--TC-TGG-GCCAATAGTTTGGAACAA--CTTGCCATTACATATTAA--A-GGAAA-Aaga
gi|4 : ttaaatTTATAAAGCTTATATTCAACCGCAAAAAGATTACTGTAATGTTATATTGGGTGGCACCTGTCAACTGAACT--TAAATAAA--AT-ATTTAGGCTCCAAAAAACGTGCTTGCGAAATCATTTTGGATTACAATGGT-----------------------AAAAAGCTTGCAGAAATT--AAAAATA--CTAACAGT-TTTTGACAGGATATATCTCCAGAAAGCAAAATTTATGTACAAAATAGCAAAGTC-AACAACCGCAG------CCTAGTACATCAATGTCGAATGAAATGTTTTACTTCAGACAAACAAATAAAAATGCACCTGTTACATGGTCAAATTCTTCAA----ATA-----AC--------AT----CATACTACATGTACCTA---------A----ACCAAACTAA----TATTTGAACAATTAGTCT-A-ACATACTT-TGG-TCCAATAATATGGAATAA--TCTACCAGAAAATATCAA--A-GAAAACACTTCTGTAATactac
gi|18 : TATAAAGCTCATATCCACCCTCATTTAGATTAGTGTAATGTTGTAAGGGGTGGCACTTGTCAAATGAACg
gi|13 : GCACCTGTCAGTTGAACC--TAAATAGA--AT-ATTTAGGCTCCAAAAA-CGTCCTTGCAAAATCGTCTTAGATTACAAGGTTGAAAACACAT------------TAGAAAGCTTGCAGGAGTT--AGAAATA--GTAACAGT-TTTTGACAGGAT
gi|11 : GA--ATATTTTAGACTCCAAAGA-CATGCTTGCAAAAGCATCTTGGATTACAATGATAAAAACACAT------------TAAAAAGCCAGCAGAAATT--AAAAATA--CTA--AGTGTTTTGACAGGATATACCTTCAGAAAGCAAAATTTACGTCCAAAATAa
gi|6 : TTGCAG---CATCTTGGATTACAATGTTGAAAACACATATATGACACATATAGAAAGCTTGCAGGAGTT--AAAAATA--GTAACAGT-TTTTGACAGGATGTAAT-CCGGAAAGCAAAATGTATGTACAAAATAGCAAA-TACAATA----CAA------T--AC---ATCAATG-------AAATGTTTGACTTCAAGCAAACAAATAAAAATGCACCTGTAACACAGTCAAATTCTTCTA----ACA-----ACTTCAT---AC----C---------------A---------ACTGGACTGAACAAAGAAATATTCAAACAA--AGTCT-A-ACATACTC-TGG-TCCAATAATATGGAACAATTTCTACCAGAAAATACCAA--AGAAAAA-ACTATTGTAAt
gi|7 : tCAAAATCATCTTGGATTACAATGTTGAAAACACAT------------TAGAAAGCTTGCAGGAGTT--AAAAA-AACCTAACAGT-TTTTGACAGGATATATCGCCGGAAAGCAATATTTATGCACAAAATAG----------TAA----AG------CCTAC---ATCAATG-------AAATGTTTAACTTCAGACAAAGAAATAAAAATGCACCTGTAACACGGTCAAATAATTTAA----ACA-----AC--------TT----CATACTACTT------A---------A----ACCGAACAAAGAAATATTTAAACAA--AGTCT-A-ATATACTC-TGG-TCCAATAATATGGAATAA--TCTACCAGAAAATATCAA--A-GAAAA-ACTTCTGAAAT
gi|10 : ATGGTCAAATTCTTCAACTTCACACT---GC--------CT----C---------------A---------A-----CCGGACAAAGAAATATTTAAACAA--AGTCT-A-ACATA-CTCTGG-TCTAATAATATGGAATAA--TCTACCAGAAAATATCAAAGA-AAAAA-ACTTCTTTAATG
gi|15 : caaacacgttaacaaataactgacatgcacagtagtcccccttagctaTCAAATTCTTCAA----ACA-----ACTGTATACTAT----CT--------------A---------A----ATTTAACAAAGGTGTATTTTAACAA--TGTGTAACATACA--T-GGG-TCAAATAAGATGGATAAA--TCT
gi|14 : atAATTCTCCAA----AGA-----AC--------TT----C---------------ATACTACCTAA----ACCAAACAAAAAAATGTTTGAA------GT-T-GAACATA-CT-CGGGTCCAATAATATGGAATAA--TCTACCAATAGATATTAA--AGAGAAA-ACTTagcatgaaaggaatatttca
gi|16 : ---------------A---------A----TCTGAACAAAGGAATGTTCAAACAA--AGTTTAACATA-A-TC-TGG-TCC----------AACAA--TTTACCAGAAAATAATAAAGA-AAAAA-ACTTCTGTGATcaat
Alignments
lowQualScore : 111 111111111111111 11111 222222222222 11111 44444444444444444444 2222222 1111 111 2222222222 1111 888888888888888888888888888888888888888888888888888 3 11
lowQualScore : 0 0 77 5 000 6 999999999999999 3 66666 2 0 1 22 0 1 2 1 77 5 0 1 1 222222222222 4 2 4 4 0 66 00000 22222222222222222222 6666666 4 4444 111 9999999999 99 0000 222222222222222222222222222222222222222222222222222 66 66 0 6 0 1 66 4 777 5 88 5 5
lowQualScore : . . .. . ... . ............... . ..... . . . .. . . . . .. . . . . ............ . . . . . .. ..... .................... ....... . .... ... .......... .. .... ................................................... .. .. . . . . .. . ... . .. . .
lowQualScore : 8 4 99 0 000 6 111111111111111 5 77777 2 7 0 11 4 0 0 0 99 7 7 0 0 888888888888 4 2 4 4 1 22 33333 44444444444444444444 0000000 4 2222 777 2222222222 22 6666 555555555555555555555555555555555555555555555555555 11 11 9 2 1 7 11 4 888 0 88 0 0
consensus : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTAATACATC-------AATGAAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C---------A---------A--------ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAA-GA-A-AAA-ACTTCTGTAATGG
Reference ( family-2769 ) : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCNCATANAGATTACTGTAATGTTATATGGGGNGGCACCTGTCAAACGAACCTAAATAGAATNTTT-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTANCACATC-------AATGAAATGTTTAACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C---------A---------A--------ACCGAA--CAAAGAAATATTTAAACAA--AGTCTACACATACTCTGGTCCAATAATATGGAACAA--TCTACCA-GAA---AATATCAAA-G--A-AAA-ACTTCTGTAATGG
gi|1 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATCTATTAATA---ACAACATAATTTCGAAAAATCATGTATATCA----TA----T-----GTAAAATAAATCCATG-----AAACATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGATTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATAACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAG-TTAAAAA-AC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC--CAATAACCTCAG------CCGAA---ATC-------AATGAAATGTTTTACTTCAGACA----AACAAATAA---AAATACAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C---------A---------A--------ACCGAA--CAAAGAATTATTTAAACAA--AGTATATATATA-TTTGGTCCAATAAAATGGAATAA--TCTTCCA-GAA---AATATCAAA-A--T-AAA-ACTTTTGTAATAG
gi|10 : CAAACACGTTAACAAATAACTGACATGCACAGTAGTCCCCCT-TAGCTAATGGTCAAATTCTTCAACTTCACACT---GC--------CT----C---------A---------A---------CCGGA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCTAATAATATGGAATAA--TCTACCA-GAA---AATATCAAA-GAAA-AAA-ACTTCTTTAATGG
gi|11 : GAATATTTTAGACTCC-AAAGACATGCTTGCAAAAGCATCTTGGATTACAATGATAAAAACACAT------------TAAAAAGCCAGCAGAAA-TTAAAAATAC-TA--AGTGTTTTGACAGGATATACCTTCAGAAAGCAAAATTTACGTCCAAAATA
gi|12 : TATCTCAAGATAAA--GTAC-----ATATTTATTGATA---ACAG--TTACTTGGAAAAACCATGAAGATCA----TAATTATA---TGTAAAACGATTTCATT-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTACCCTCGACCATATAGTTCAGt
gi|13 : GCACCTGTCAGTTGAACCTAAATAGAATATTT-AGGCTCC-AAAAACGTCCTTGCAAAATCGTCTTAGATTACAAGGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAGAAATAG-TAACAGT-TTTTGACAGGATA
gi|14 : AATTCTCCAA----AGA-----AC--------TT----C---------ATACTACCTAA--------ACCAAA--CAAAAAAATGTTTGAA------GTTGA-ACATACTCGGGTCCAATAATATGGAATAA--TCTACCA-ATA---GATATTAAA-G--AGAAA-ACTTC
gi|15 : TCAAATTCTTCAA----ACA-----ACTGTATACTAT----CT--------A---------A--------ATTTAA--CAAAGGTGTATTTTAACAA--TGTGTA-ACATACATGGGTCAAATAAGATGGATAAA--TCTAGCATGAAAGGAATATaat
gi|16 : at---------A---------A--------TCTGAA--CAAAGGAATGTTCAAACAA--AGTTTA-ACATAATCTGGTCC----------AACAA--TTTACCA-GAA---AATAATAAA-GAAA-AAA-ACTTCTGTGATGttca
gi|17 : acatactaccctTCTAAAGATAAA--GTAC-----ATATTTATTGATA---ACAG--TAACTTGGAAAAACCATGTAGATCATAATTA----TA---TGTAAAA
gi|18 : TATAAAGCTCATATCCACCCTCATTTAGATTAGTGTAATGTTGTAAGGGGTGGCACTTGTCAAATGAACaga
gi|19 : TGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATAT
gi|2 : CACATCAAAAACGTACTTGTTTAGATATCAAAGATATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTAATG---ACAACATAATTTGGAAAAATCATGTAGATCA----TA----T-----GTAAAATAAATCCATG-----AAAAATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGGCCATAGAGTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATTACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAGTTTAAAAAAAC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC--
gi|20 : TAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGAT
gi|3 : ATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATAAAGATTACTTAAATGTTATATGGCGAGGTACCTCTCAAACTAACTTAAATATACTATTT-CGGCTCC-CAACAGGT--TTGTAGAATTATTCTAGATTATGATGTTTAAGGTTCTT------------TAGAGAGAATGCAGGTT-TTAAAAATGT-TAACAAT-ATTTGACAGAGTATATCTCAAGAAAGCAAAATATATGCACAA-------AAATT--CAATAT---CAGTTACTCCCTAACATACC-------AATGAATGGTTAAATTTTAGACA----AATAAATGA---AAATGAGC----------CTGTAAC--ACGGTCAGTTACTTCAA----ACAATTTTAC--------ATTACCC---------A---------G--------CCCAAA--GAAAGACATATTTAAACAA--AGTTTG-ACATATTCTGGGCCAATAGTTTGGAACAA--CTTGCCA-TTA---CATATTAAAGG--A-AAA-ACT
gi|4 : ttaaatTTATAAAGCTTATATTCAACCGCAAAAAGATTACTGTAATGTTATATTGGGTGGCACCTGTCAACTGAACTTAAATAAAATATTT-AGGCTCCAAAAAACGTGCTTGCGAAATCATTTTGGATTACAATGGTAA-----------------------AAAGCTTGCAGAAA-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCAGAAAGCAAAATTTATGTACAAAATAGCAAAGTCAACAACCG---CAG------CCTAGTACATCAATGTCGAATGAAATGTTTTACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTTAC--ATGGTCAAATTCTTCAA----ATA-----AC--------AT----C---------AT--------ACTACATGTACCTAAACCAAACTAATATTTGAACAATTAGTCTA-ACATACTTTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAA-G--A-AAACACTTCTGTAATGac
gi|5 : CACATCAAAAACATACTTGTTTAGATTTGAAAGACATAAATTTGGATCTTAATAGTGAAAATTTCAGCATGATATCTAAGGATAAA--GTACTTGGCATATTTATTGATT---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATTCATG-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGAGTTCAGATTTATAAAGCTTATATTCAACCTCATGTAGATTTCTGTAATGTTAAATAGGGCGGCACCTGTC-AATGAACCTAGATAGAATATTA-AGGCTCC-AAAAACGTGCTTGTAAAATCATCTTGGATAACAATGATTAAAATACAC------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAG
gi|6 : TTGCAG---CATCTTGGATTACAATGTTGAAAACACATATATGACACATATAGAAAGCTTGCAGGAG-TTAAAAATAG-TAACAGT-TTTTGACAGGATGTA-ATCCGGAAAGCAAAATGTATGTACAAAATAGCAAA-TA--CAATA---------------CAATACATC-------AATGAAATGTTTGACTTCAAGCA----AACAAATAA---AAATGCAC----------CTGTAAC--ACAGTCAAATTCTTCTA----ACA-----ACTTCAT---AC----C---------A---------ACTGG----ACTGAA--CAAAGAAATATTCAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAACAATTTCTACCA-GAA---AATACCAAA-GA-A-AAA-ACTATTGTAA
gi|7 : tCAAAATCATCTTGGATTACAATGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAAAACCTAACAGT-TTTTGACAGGATATATCGCCGGAAAGCAATATTTATGCACAAAATAG------------TAA----AG------CCTA---CATC-------AATGAAATGTTTAACTTCAGACA----AAGAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATAATTTAA----ACA-----AC--------TT----CATACTACTTA---------A--------ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ATATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAA-G--A-AAA-ACTTCTGAAAT
gi|8 : CACATCAAAAGAG-ATTT--TTGGATGTAAAAGATTTAAACCTGGATCTAAATGGTCACAATGTTAGCATGACCTC-------AAATCGTACTTGGTAAATTTACTGACACTTATAATATT-CTAGTAATAACC--------------------TACCCTGCAAAACAA--CCATGTCATCAAATGTTTGGCTTCTATCAAAAATAAAGCAGTATTTAAGTCCCAAATATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATATAGATTACTGTAATGTTATATGGCGAGGCACCTCTCAAACTAACTTAAATA
gi|9 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTGATG---ACAACATAACTTGAAAAAATCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCTTTGACCATAAAGTTCAGTTTTtaggattc
Alignments
lowQualScore : 111 111111111111111 11111 222222222222 11111 4444444444444 111 2222222 1111 111 2222222222 1111 888888888888888888888888888888888888888 1
lowQualScore : 0 0 77 5 000 6 999999999999999 3 66666 2 0 1 11 0 0 66 5 0 1 1 222222222222 4 2 4 4 0 66 00000 1111111111111 333 6666666 1 4444 111 9999999999 99 0000 222222222222222222222222222222222222222 66 66 0 4 0 66 4 777 0
lowQualScore : . . .. . ... . ............... . ..... . . . .. . . .. . . . . ............ . . . . . .. ..... ............. ... ....... . .... ... .......... .. .... ....................................... .. .. . . . .. . ... .
lowQualScore : 8 4 99 0 000 6 111111111111111 5 77777 2 7 9 44 4 6 77 7 7 0 0 888888888888 4 2 4 4 1 22 33333 8888888888888 000 0000000 0 2222 777 2222222222 22 6666 555555555555555555555555555555555555555 11 11 9 4 1 11 4 888 0
consensus : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTAATACATCAATG-------AAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
Reference ( family-2769 ) : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTAATACATCAATG-------AAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
gi|1 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATCTATTAATA---ACAACATAATTTCGAAAAATCATGTATATCA----TA----T-----GTAAAATAAATCCATG-----AAACATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGATTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATAACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAG-TTAAAAA-AC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC--CAATAACCTCAG------CCGAA---ATCAATG-------AAATGTTTTACTTCAGACA----AACAAATAA---AAATACAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAATTATTTAAACAA--AGTATATATATA-TTTGGTCCAATAAAATGGAATAA--TCTTCCA-GAA---AATATCAAA--ATAAAACTTTTGTAATAG
gi|10 : CAAACACGTTAACAAATAACTGACATGCACAGTAGTCCCCCT-TAGCTAATGGTCAAATTCTTCAACTTCACACT---GC--------CT----C-A---------A-----CCGGA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCTAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAGAAAAAAACTTCTTTAATGG
gi|11 : GAATATTTTAGACTCCAAAGA-CATGCTTGCAAAAGCATCTTGGATTACAATGATAAAAACACAT------------TAAAAAGCCAGCAGAAA-TTAAAAATAC-TA--AGTGTTTTGACAGGATATACCTTCAGAAAGCAAAATTTACGTCCAAAATA
gi|12 : TATCTCAAGATAAA--GTAC-----ATATTTATTGATA---ACAG--TTACTTGGAAAAACCATGAAGATCA----TAATTATA---TGTAAAACGATTTCATT-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTACCCTCGACCATATAGTTCAGt
gi|13 : GCACCTGTCAGTTGAACCTAAATAGAATATTT-AGGCTCCAAAAA-CGTCCTTGCAAAATCGTCTTAGATTACAAGGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAGAAATAG-TAACAGT-TTTTGACAGGATA
gi|14 : AATTCTCCAA----AGA-----AC--------TT----C-ATACTACCTAA----ACCAAA--CAAAAAAATGTTTGAA------GTTGA-ACATACTCGGGTCCAATAATATGGAATAA--TCTACCA-ATA---GATATTAAAG-AGAAAACTTC
gi|15 : TCAAATTCTTCAA----ACA-----ACTGTATACTAT----CTA---------A----ATTTAA--CAAAGGTGTATTTTAACAA--TGTGTA-ACATACATGGGTCAAATAAGATGGATAAA--TCTAGCATGAAAGGAATATaat
gi|16 : at-A---------A----TCTGAA--CAAAGGAATGTTCAAACAA--AGTTTA-ACATAATCTGGTCC----------AACAA--TTTACCA-GAA---AATAATAAAGAAAAAAACTTCTGTGATGttca
gi|17 : acatactaccctTCTAAAGATAAA--GTAC-----ATATTTATTGATA---ACAG--TAACTTGGAAAAACCATGTAGATCATAATTA----TA---TGTAAAA
gi|18 : TATAAAGCTCATATCCACCCTCATTTAGATTAGTGTAATGTTGTAAGGGGTGGCACTTGTCAAATGAACaga
gi|19 : TGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATAT
gi|2 : CACATCAAAAACGTACTTGTTTAGATATCAAAGATATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTAATG---ACAACATAATTTGGAAAAATCATGTAGATCA----TA----T-----GTAAAATAAATCCATG-----AAAAATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGGCCATAGAGTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATTACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAGTTTAAAAAAAC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC--
gi|20 : TAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGAT
gi|3 : ATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATAAAGATTACTTAAATGTTATATGGCGAGGTACCTCTCAAACTAACTTAAATATACTATTT-CGGCTCCCAACA-GGT--TTGTAGAATTATTCTAGATTATGATGTTTAAGGTTCTT------------TAGAGAGAATGCAGGTT-TTAAAAATGT-TAACAAT-ATTTGACAGAGTATATCTCAAGAAAGCAAAATATATGCACAA-------AAATT--CAATAT---CAGTTACTCCCTAACATACCAATG-------AATGGTTAAATTTTAGACA----AATAAATGA---AAATGAGC----------CTGTAAC--ACGGTCAGTTACTTCAA----ACAATTTTAC--------ATTACCC-A---------G----CCCAAA--GAAAGACATATTTAAACAA--AGTTTG-ACATATTCTGGGCCAATAGTTTGGAACAA--CTTGCCA-TTA---CATATTAAAG-GAAAAACT
gi|4 : ttaaatTTATAAAGCTTATATTCAACCGCAAAAAGATTACTGTAATGTTATATTGGGTGGCACCTGTCAACTGAACTTAAATAAAATATTT-AGGCTCCAAAAAACGTGCTTGCGAAATCATTTTGGATTACAATGGTAAAAA-----------------------GCTTGCAGAAA-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCAGAAAGCAAAATTTATGTACAAAATAGCAAAGTCAACAACCG---CAG------CCTAGTACATCAATGTCGAATGAAATGTTTTACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTTAC--ATGGTCAAATTCTTCAA----ATA-----AC--------AT----C-ATACTAC---ATGT-ACCTAAACCAAACTAATATTTGAACAATTAGTCTA-ACATACTTTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAACACTTCTGTAATGac
gi|5 : CACATCAAAAACATACTTGTTTAGATTTGAAAGACATAAATTTGGATCTTAATAGTGAAAATTTCAGCATGATATCTAAGGATAAA--GTACTTGGCATATTTATTGATT---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATTCATG-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGAGTTCAGATTTATAAAGCTTATATTCAACCTCATGTAGATTTCTGTAATGTTAAATAGGGCGGCACCTGTC-AATGAACCTAGATAGAATATTA-AGGCTCCAAAAA-CGTGCTTGTAAAATCATCTTGGATAACAATGATTAAAATACAC------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAG
gi|6 : TTGCAG---CATCTTGGATTACAATGTTGAAAACACATATATGACACATATAGAAAGCTTGCAGGAG-TTAAAAATAG-TAACAGT-TTTTGACAGGATGTA-ATCCGGAAAGCAAAATGTATGTACAAAATAGCAAA-TA--CAATA---------------CAATACATCAATG-------AAATGTTTGACTTCAAGCA----AACAAATAA---AAATGCAC----------CTGTAAC--ACAGTCAAATTCTTCTA----ACA-----ACTTCAT---AC----C-A---------ACTGGACTGAA--CAAAGAAATATTCAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAACAATTTCTACCA-GAA---AATACCAAAG-AAAAAACTATTGTAA
gi|7 : tCAAAATCATCTTGGATTACAATGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAAAACCTAACAGT-TTTTGACAGGATATATCGCCGGAAAGCAATATTTATGCACAAAATAG------------TAA----AG------CCTA---CATCAATG-------AAATGTTTAACTTCAGACA----AAGAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATAATTTAA----ACA-----AC--------TT----C-ATACTACTTAA----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ATATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG--AAAAACTTCTGAAAT
gi|8 : CACATCAAAAGAG-ATTT--TTGGATGTAAAAGATTTAAACCTGGATCTAAATGGTCACAATGTTAGCATGACCTC-------AAATCGTACTTGGTAAATTTACTGACACTTATAATATT-CTAGTAATAACC--------------------TACCCTGCAAAACAA--CCATGTCATCAAATGTTTGGCTTCTATCAAAAATAAAGCAGTATTTAAGTCCCAAATATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATATAGATTACTGTAATGTTATATGGCGAGGCACCTCTCAAACTAACTTAAATA
gi|9 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTGATG---ACAACATAACTTGAAAAAATCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCTTTGACCATAAAGTTCAGTTTTtaggattc
Alignments
lowQualScore : 111 111111111111111 11111 222222222222 11111 4444444444444 111 2222222 1111 111 2222222222 1111 888888888888888888888888888888888888888 1
lowQualScore : 0 0 77 5 000 6 999999999999999 3 66666 2 0 1 11 0 0 66 5 0 1 1 222222222222 4 2 4 4 0 66 00000 1111111111111 333 6666666 1 4444 111 9999999999 99 0000 222222222222222222222222222222222222222 66 66 0 4 0 66 4 777 0
lowQualScore : . . .. . ... . ............... . ..... . . . .. . . .. . . . . ............ . . . . . .. ..... ............. ... ....... . .... ... .......... .. .... ....................................... .. .. . . . .. . ... .
lowQualScore : 8 4 99 0 000 6 111111111111111 5 77777 2 7 9 44 4 6 77 7 7 0 0 888888888888 4 2 4 4 1 22 33333 8888888888888 000 0000000 0 2222 777 2222222222 22 6666 555555555555555555555555555555555555555 11 11 9 4 1 11 4 888 0
consensus : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTAATACATCAATG-------AAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
Reference ( family-2769 ) : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTAATACATCAATG-------AAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
gi|1 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATCTATTAATA---ACAACATAATTTCGAAAAATCATGTATATCA----TA----T-----GTAAAATAAATCCATG-----AAACATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGATTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATAACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAG-TTAAAAA-AC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC--CAATAACCTCAG------CCGAA---ATCAATG-------AAATGTTTTACTTCAGACA----AACAAATAA---AAATACAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAATTATTTAAACAA--AGTATATATATA-TTTGGTCCAATAAAATGGAATAA--TCTTCCA-GAA---AATATCAAA--ATAAAACTTTTGTAATAG
gi|10 : CAAACACGTTAACAAATAACTGACATGCACAGTAGTCCCCCT-TAGCTAATGGTCAAATTCTTCAACTTCACACT---GC--------CT----C-A---------A-----CCGGA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCTAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAGAAAAAAACTTCTTTAATGG
gi|11 : GAATATTTTAGACTCCAAAGA-CATGCTTGCAAAAGCATCTTGGATTACAATGATAAAAACACAT------------TAAAAAGCCAGCAGAAA-TTAAAAATAC-TA--AGTGTTTTGACAGGATATACCTTCAGAAAGCAAAATTTACGTCCAAAATA
gi|12 : TATCTCAAGATAAA--GTAC-----ATATTTATTGATA---ACAG--TTACTTGGAAAAACCATGAAGATCA----TAATTATA---TGTAAAACGATTTCATT-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTACCCTCGACCATATAGTTCAGt
gi|13 : GCACCTGTCAGTTGAACCTAAATAGAATATTT-AGGCTCCAAAAA-CGTCCTTGCAAAATCGTCTTAGATTACAAGGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAGAAATAG-TAACAGT-TTTTGACAGGATA
gi|14 : AATTCTCCAA----AGA-----AC--------TT----C-ATACTACCTAA----ACCAAA--CAAAAAAATGTTTGAA------GTTGA-ACATACTCGGGTCCAATAATATGGAATAA--TCTACCA-ATA---GATATTAAAG-AGAAAACTTC
gi|15 : TCAAATTCTTCAA----ACA-----ACTGTATACTAT----CTA---------A----ATTTAA--CAAAGGTGTATTTTAACAA--TGTGTA-ACATACATGGGTCAAATAAGATGGATAAA--TCTAGCATGAAAGGAATATaat
gi|16 : at-A---------A----TCTGAA--CAAAGGAATGTTCAAACAA--AGTTTA-ACATAATCTGGTCC----------AACAA--TTTACCA-GAA---AATAATAAAGAAAAAAACTTCTGTGATGttca
gi|17 : acatactaccctTCTAAAGATAAA--GTAC-----ATATTTATTGATA---ACAG--TAACTTGGAAAAACCATGTAGATCATAATTA----TA---TGTAAAA
gi|18 : TATAAAGCTCATATCCACCCTCATTTAGATTAGTGTAATGTTGTAAGGGGTGGCACTTGTCAAATGAACaga
gi|19 : TGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATAT
gi|2 : CACATCAAAAACGTACTTGTTTAGATATCAAAGATATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTAATG---ACAACATAATTTGGAAAAATCATGTAGATCA----TA----T-----GTAAAATAAATCCATG-----AAAAATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGGCCATAGAGTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATTACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAGTTTAAAAAAAC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC--
gi|20 : TAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGAT
gi|3 : ATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATAAAGATTACTTAAATGTTATATGGCGAGGTACCTCTCAAACTAACTTAAATATACTATTT-CGGCTCCCAACA-GGT--TTGTAGAATTATTCTAGATTATGATGTTTAAGGTTCTT------------TAGAGAGAATGCAGGTT-TTAAAAATGT-TAACAAT-ATTTGACAGAGTATATCTCAAGAAAGCAAAATATATGCACAA-------AAATT--CAATAT---CAGTTACTCCCTAACATACCAATG-------AATGGTTAAATTTTAGACA----AATAAATGA---AAATGAGC----------CTGTAAC--ACGGTCAGTTACTTCAA----ACAATTTTAC--------ATTACCC-A---------G----CCCAAA--GAAAGACATATTTAAACAA--AGTTTG-ACATATTCTGGGCCAATAGTTTGGAACAA--CTTGCCA-TTA---CATATTAAAG-GAAAAACT
gi|4 : ttaaatTTATAAAGCTTATATTCAACCGCAAAAAGATTACTGTAATGTTATATTGGGTGGCACCTGTCAACTGAACTTAAATAAAATATTT-AGGCTCCAAAAAACGTGCTTGCGAAATCATTTTGGATTACAATGGTAAAAA-----------------------GCTTGCAGAAA-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCAGAAAGCAAAATTTATGTACAAAATAGCAAAGTCAACAACCG---CAG------CCTAGTACATCAATGTCGAATGAAATGTTTTACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTTAC--ATGGTCAAATTCTTCAA----ATA-----AC--------AT----C-ATACTAC---ATGT-ACCTAAACCAAACTAATATTTGAACAATTAGTCTA-ACATACTTTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAACACTTCTGTAATGac
gi|5 : CACATCAAAAACATACTTGTTTAGATTTGAAAGACATAAATTTGGATCTTAATAGTGAAAATTTCAGCATGATATCTAAGGATAAA--GTACTTGGCATATTTATTGATT---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATTCATG-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGAGTTCAGATTTATAAAGCTTATATTCAACCTCATGTAGATTTCTGTAATGTTAAATAGGGCGGCACCTGTC-AATGAACCTAGATAGAATATTA-AGGCTCCAAAAA-CGTGCTTGTAAAATCATCTTGGATAACAATGATTAAAATACAC------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAG
gi|6 : TTGCAG---CATCTTGGATTACAATGTTGAAAACACATATATGACACATATAGAAAGCTTGCAGGAG-TTAAAAATAG-TAACAGT-TTTTGACAGGATGTA-ATCCGGAAAGCAAAATGTATGTACAAAATAGCAAA-TA--CAATA---------------CAATACATCAATG-------AAATGTTTGACTTCAAGCA----AACAAATAA---AAATGCAC----------CTGTAAC--ACAGTCAAATTCTTCTA----ACA-----ACTTCAT---AC----C-A---------ACTGGACTGAA--CAAAGAAATATTCAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAACAATTTCTACCA-GAA---AATACCAAAG-AAAAAACTATTGTAA
gi|7 : tCAAAATCATCTTGGATTACAATGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAAAACCTAACAGT-TTTTGACAGGATATATCGCCGGAAAGCAATATTTATGCACAAAATAG------------TAA----AG------CCTA---CATCAATG-------AAATGTTTAACTTCAGACA----AAGAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATAATTTAA----ACA-----AC--------TT----C-ATACTACTTAA----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ATATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG--AAAAACTTCTGAAAT
gi|8 : CACATCAAAAGAG-ATTT--TTGGATGTAAAAGATTTAAACCTGGATCTAAATGGTCACAATGTTAGCATGACCTC-------AAATCGTACTTGGTAAATTTACTGACACTTATAATATT-CTAGTAATAACC--------------------TACCCTGCAAAACAA--CCATGTCATCAAATGTTTGGCTTCTATCAAAAATAAAGCAGTATTTAAGTCCCAAATATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATATAGATTACTGTAATGTTATATGGCGAGGCACCTCTCAAACTAACTTAAATA
gi|9 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTGATG---ACAACATAACTTGAAAAAATCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCTTTGACCATAAAGTTCAGTTTTtaggattc
blockSeqs : TC T CTT C TAATTATA T TCATC T T TT TT A A A ATATGACACATA T T C G CG GTCAA TCAGTTACTC ACA TCGAATG A CGTT CTG AGTAGTCCCC TA CTTC ACTTCATACTACCTAAA AC TT . TT T AGG A
blockSeqs : . T . C TAATTATA A . A T GA T . T G . . T . . CA GTC GCAG GTA . T . . . . . ACTGTATACTATCTAAA . . . . . . A
blockSeqs : . T . T TACCC A . T A AA A . A T . . A . . CA ATT AAG ATA . G . . . . . ATTTTACATTACCCAGC . . . . . . .
blockSeqs : . T . C TATA A . T G AA T . T T . . T . . . TA . . . A . . . . . ACATCATACTACATGTA . . . . . . .
blockSeqs : . . . . TATA . . C T GT T . G A . . T . . . . . . . . . ACTTCATACCAACTGGA . . . . . . .
blockSeqs : . . . . TAT A AT A . A T . . T . . . ACTTCATACTACTTAAA . . . . . . .
blockSeqs : T G . . T . . . CTGCCTCAA . . . . . . .
blockSeqs : T G . . A . . . . . . . .
blockSeqCons : TAATTATA******* AG*********** ATA ACTTCATACTACCTAAA**********************
originalCons : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCA----TA----TA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAA---CAG------CCTAATACATCAATG-------AAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACA-----AC--------AT----C-A---------A----ACCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
finalCons : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATA---ACAACATAACTTGGAAAAACCATGTAGATCATAATTATA-------TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCCAAAAA-CGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTC--CAATAAG-----------CCTAATACATCAATG-------AAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAA----ACAACTTCATACTACCTAAA----------------------CCGAA--CAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
Alignments
lowQualScore : 33333333333 11111 222222222222 8888888888888888 2222222 1111 111 2222222222 111111 1
lowQualScore : 0 0 77 5 99 22222222222 3 66666 2 0 1 11 0 0 66 5 0 1 1 222222222222 4 2 4 4 0 2 1 5 3333333333333333 3 6666666 1 4444 111 9999999999 99 222222 4 66 0 4 0 66 4 777 0
lowQualScore : . . .. . .. ........... . ..... . . . .. . . .. . . . . ............ . . . . . . . . ................ . ....... . .... ... .......... .. ...... . .. . . . .. . ... .
lowQualScore : 8 4 99 0 11 11111111111 5 77777 2 7 9 44 4 6 77 7 7 0 0 888888888888 4 2 4 4 1 2 0 2 2222222222222222 8 0000000 0 2222 777 2222222222 22 888888 4 11 9 4 1 11 4 888 0
consensus : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATAACAACATAACTTGGAAAAACCATGTAGATCATAA-TATA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTCCAATAACC-CAG------CCTAATACATC-------AATGAAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAAACAACTTCATAC------TACC-TAAACCGAACAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
Reference ( family-2769 ) : CACATCAAAAACGTACTTGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATATCTAAAGATAAA--GTACTTGGCATATTTATTGATAACAACATAACTTGGAAAAACCATGTAGATCATAATTATA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTCGACCATAGAGTTCAGTTTTATAAAGCTTATATTCAACCTCATGNAGATTACTGTAATGTTGTATGGGGTGGCACCTGTCAAATGAACCTAGATAGAATATTN-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGGATTACAATGNTNAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCGGAAAGCAAAATTTATGTACAAAATAGCGAAGTCCAATA-----AG------CCTAATACATC-------AATGAAATGTTTNACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATTCTTCAAACAACTTCATAC------TACC-TAAACCGAACAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAAAACTTCTGTAATGG
gi|1 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATCTATTAATAACAACATAATTTCGAAAAATCATGTATATCATA---------TGTAAAATAAATCCATG-----AAACATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGATTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATAACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAG-TTAAAAA-AC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTCCAATAACCTCAG------CCGAA---ATC-------AATGAAATGTTTTACTTCAGACA----AACAAATAA---AAATACAC----------CTGTAAC--ACGGTCAAATTCTTCAAACAACATC----------------AAACCGAACAAAGAATTATTTAAACAA--AGTATATATATA-TTTGGTCCAATAAAATGGAATAA--TCTTCCA-GAA---AATATCAAA--ATAAAACTTTTGTAATAG
gi|10 : CAAACACGTTAACAAATAACTGACATGCACAGTAGTCCCCCT-TAGCTAATGGTCAAATTCTTCAA----CTTCACAC------TGCC-TCAACCGGACAAAGAAATATTTAAACAA--AGTCTA-ACATACTCTGGTCTAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAGAAAAAAACTTCTTTAATGG
gi|11 : GAATATTTTAGACTCC-AAAGACATGCTTGCAAAAGCATCTTGGATTACAATGATAAAAACACAT------------TAAAAAGCCAGCAGAAA-TTAAAAATAC-TA--AGTGTTTTGACAGGATATACCTTCAGAAAGCAAAATTTACGTCCAAAATA
gi|12 : TATCTCAAGATAAA--GTAC-----ATATTTATTGATAACAG--TTACTTGGAAAAACCATGAAGATCATAATTATA---TGTAAAACGATTTCATT-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTACCCTCGACCATATAGTTCAGt
gi|13 : GCACCTGTCAGTTGAACCTAAATAGAATATTT-AGGCTCC-AAAAACGTCCTTGCAAAATCGTCTTAGATTACAAGGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAGAAATAG-TAACAGT-TTTTGACAGGATA
gi|14 : AATTCTCCAAAGAACTTCATAC------TACC-TAAACCAAACAAAAAAATGTTTGAA------GTTGA-ACATACTCGGGTCCAATAATATGGAATAA--TCTACCA-ATA---GATATTAAAG-AGAAAACTTC
gi|15 : TCAAATTCTTCAAACAACTGTATAC------TATC-TAAATTTAACAAAGGTGTATTTTAACAA--TGTGTA-ACATACATGGGTCAAATAAGATGGATAAA--TCTAGCATGAAAGGAATATaat
gi|16 : atCATAC------TACCCTAATCTGAACAAAGGAATGTTCAAACAA--AGTTTA-ACATAATCTGGTCC----------AACAA--TTTACCA-GAA---AATAATAAAGAAAAAAACTTCTGTGATGttca
gi|17 : aTCTAAAGATAAA--GTAC-----ATATTTATTGATAACAG--TAACTTGGAAAAACCATGTAGATCATAATTATA---TGTAAAA
gi|18 : TATAAAGCTCATATCCACCCTCATTTAGATTAGTGTAATGTTGTAAGGGGTGGCACTTGTCAAATGAACaga
gi|19 : TGTTTAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGATAT
gi|2 : CACATCAAAAACGTACTTGTTTAGATATCAAAGATATAAATTTGGATCTTAATAGAGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTAATGACAACATAATTTGGAAAAATCATGTAGATCATA---------TGTAAAATAAATCCATG-----AAAAATTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGGCCATAGAGTTCAGTTTTATAAACCTTATATTCAACCTCATGAAGATTACTGTAATTTTGTATAAGTTGGCACCTGTCAAATGAACCAAGATAGAATTTTA-AGGCTCC-AAAAACGTGCTTGCAAAATCATCTTGAATAACAATGATTAAAACACAC------------TAGAAAGCTTGCAGGAGTTTAAAAAAAC-TAACAGT-TTTTGATAGGATTTATTTCCGGAAAACAAAATTTATGTACAAAATAGCGAAGTC
gi|20 : TAGATGTCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATGAT
gi|3 : ATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATAAAGATTACTTAAATGTTATATGGCGAGGTACCTCTCAAACTAACTTAAATATACTATTT-CGGCTCC-CAACAGGT--TTGTAGAATTATTCTAGATTATGATGTTTAAGGTTCTT------------TAGAGAGAATGCAGGTT-TTAAAAATGT-TAACAAT-ATTTGACAGAGTATATCTCAAGAAAGCAAAATATATGCACAAAA-------ATTCAATATC---AGTTACTCCCTAACATACC-------AATGAATGGTTAAATTTTAGACA----AATAAATGA---AAATGAGC----------CTGTAAC--ACGGTCAGTTACTTCAAACAATTTTACAT------TACC-CAGCCCAAAGAAAGACATATTTAAACAA--AGTTTG-ACATATTCTGGGCCAATAGTTTGGAACAA--CTTGCCA-TTA---CATATTAAAG-GAAAAACT
gi|4 : ttaaatTTATAAAGCTTATATTCAACCGCAAAAAGATTACTGTAATGTTATATTGGGTGGCACCTGTCAACTGAACTTAAATAAAATATTT-AGGCTCCAAAAAACGTGCTTGCGAAATCATTTTGGATTACAATGGTAA-----------------------AAAGCTTGCAGAAA-TTAAAAATAC-TAACAGT-TTTTGACAGGATATATCTCCAGAAAGCAAAATTTATGTACAAAATAGCAAAGT-CAACAACCGCAG------CCTAGTACATCAATGTCGAATGAAATGTTTTACTTCAGACA----AACAAATAA---AAATGCAC----------CTGTTAC--ATGGTCAAATTCTTCAAATAACATCATACTACATGTACC-TAAACCAAAC----TAATATTTGAACAATTAGTCTA-ACATACTTTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG-AAAACACTTCTGTAATGac
gi|5 : CACATCAAAAACATACTTGTTTAGATTTGAAAGACATAAATTTGGATCTTAATAGTGAAAATTTCAGCATGATATCTAAGGATAAA--GTACTTGGCATATTTATTGATTACAACATAACTTGGAAAAACCATGTAGATCA----TATA---TGTAAAATAAATTCATG-----AAATGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCCTTGACCATAGAGTTCAGATTTATAAAGCTTATATTCAACCTCATGTAGATTTCTGTAATGTTAAATAGGGCGGCACCTGTC-AATGAACCTAGATAGAATATTA-AGGCTCC-AAAAACGTGCTTGTAAAATCATCTTGGATAACAATGATTAAAATACAC------------TAGAAAGCTTGCAGGAG-TTAAAAATAC-TAACAGT-TTTTGACAG
gi|6 : TTGCAG---CATCTTGGATTACAATGTTGAAAACACATATATGACACATATAGAAAGCTTGCAGGAG-TTAAAAATAG-TAACAGT-TTTTGACAGGATGTA-ATCCGGAAAGCAAAATGTATGTACAAAATAGCAAA-TACAATA---------------CAATACATC-------AATGAAATGTTTGACTTCAAGCA----AACAAATAA---AAATGCAC----------CTGTAAC--ACAGTCAAATTCTTCTAACAACTTCATAC------CAAC-TGGACTGAACAAAGAAATATTCAAACAA--AGTCTA-ACATACTCTGGTCCAATAATATGGAACAATTTCTACCA-GAA---AATACCAAAG-AAAAAACTATTGTAA
gi|7 : tCAAAATCATCTTGGATTACAATGTTGAAAACACAT------------TAGAAAGCTTGCAGGAG-TTAAAAAAACCTAACAGT-TTTTGACAGGATATATCGCCGGAAAGCAATATTTATGCACAAAATAGTAAAGCC-----------------------TACATC-------AATGAAATGTTTAACTTCAGACA----AAGAAATAA---AAATGCAC----------CTGTAAC--ACGGTCAAATAATTTAAACAACTTCATAC------TACT-TAAACCGAACAAAGAAATATTTAAACAA--AGTCTA-ATATACTCTGGTCCAATAATATGGAATAA--TCTACCA-GAA---AATATCAAAG--AAAAACTTCTGAAAT
gi|8 : CACATCAAAAGAG-ATTT--TTGGATGTAAAAGATTTAAACCTGGATCTAAATGGTCACAATGTTAGCATGACCTC-------AAATCGTACTTGGTAAATTTACTGACA---------CTTATAATATTC---TAG-TAATAACC-TACCCTGCAAAACAA--CCATGTCATCAAATGTTTGGCTTCTATCAAAAATAAAGCAGTATTTAAGTCCCAAATATAGGATTCAGTTTTATAAAGCTTATATTCAGTTACATATAGATTACTGTAATGTTATATGGCGAGGCACCTCTCAAACTAACTTAAATA
gi|9 : CACATCAAAAACGTACTTGTTTAGATATCAAAGACATAAATTTGGATCTTAATAGTGAAAATCTCAGCATAATATCTAAAGATAAA--GTACTTGGCATATTTATTGATGACAACATAACTTGAAAAAATCATGTAGATCA----TATA---TGTAAAATAAATCCATG-----AAACGTTTGGCTTCTGTCAAGAATTAAACAATATCTTAGCTTTGACCATAAAGTTCAGTTTTtaggattc