lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 1111 11 11 1 3333 1111 55555555 2222 222222222222 33333333333333 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 11 444444444444444444 1111 22 99999999999999999999999999999999999999999999999999 777777777777777777777777 111111 2222222222 5555555555555555555555 11111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222222222222222222 111 222222 1111 1 333 3333333 555555555555555555555 1 1 2 22222222 1111 4444444444444444444444444444444444444444444444444444444444444444444444444 2 555555555555 1 8888888888888888888888888888888 444444444444 1
lowQualScore : 8888 33 33 6 6 1111 7777 22222222 8 0000 5 999999999999 22222222222222 6 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 0 77 1 77 99999 77 4 0 5 222222222222222222 1111 3 5 5 00 77777777777777777777777777777777777777777777777777 5 333333333333333333333333 1 6 6 888888 9999999999 5 4444444444444444444444 44444 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 888 888888888888888888 0 000 0 5 999999 5 5 2222 0 000 6 9999999 5 777777777777777777777 1 3 0 0 2 4 1 7 55555555 3333 7777777777777777777777777777777777777777777777777777777777777777777777777 5 2 999999999999 0 5 4 1 1111111111111111111111111111111 000000000000 1 5 3 9 0
lowQualScore : .... .. .. . . .... .... ........ . .... . ............ .............. . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . .. . .. ..... .. . . . .................. .... . . . .. .................................................. . ........................ . . . ...... .......... . ...................... ..... .................................................................................................................................. . ... .................. . ... . . ...... . . .... . ... . ....... . ..................... . . . . . . . . ........ .... ......................................................................... . . ............ . . . . ............................... ............ . . . . .
lowQualScore : 2222 88 88 0 0 0000 0000 22222222 0 8888 2 555555555555 55555555555555 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 6 99 4 99 99999 77 0 1 7 999999999999999999 7777 0 0 0 88 22222222222222222222222222222222222222222222222222 7 777777777777777777777777 7 0 0 111111 9999999999 7 0000000000000000000000 33333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 888 000000000000000000 1 000 4 7 444444 7 7 1111 8 777 7 0000000 2 222222222222222222222 0 2 8 5 2 2 2 0 55555555 2222 7777777777777777777777777777777777777777777777777777777777777777777777777 0 9 000000000000 7 0 8 0 0000000000000000000000000000000 888888888888 4 4 8 2 8
consensus : AAAAA-ANAAGAA--AAA--GCTCTAAAAAAAAAAG-A-AAA----GCTCTAAAAAATAATTGA-AAGAGCA----AAAGAAAA--T-AAAA----AAAAAAT---AGAGCAC--GAAAAAA-AGAA--------------A-ATAAA------A---G--AAAAAAAAA----AATA----TA-A-----T-T---A-AAAAAAAA---GC---ATG--------TTT---------------ATT-------C--------TATC-----TG---TATGTT--------A--TT----------------GT-------ATAAAAAT--------GGTCTATAAACTTCTGGGACGACCCTC-AA-TA---TT-GATGAAAT--------TATTT----CG-T--A----AAT---AT------CAAAT-TT-----------TG-AATTATT--TT---------------G--CAANT--ATTTTAG---------TATATTT-------T-ATTT--CGGTGTAATTTATTTT---AAGTAGATA-CT--GTTT-ATCC-----NATA--------------A-GCTAAA----TTATTTTGT-AAGTCATAT---TTT-GGNAANTT-TTTGTTGATNC-------T---G---------T-TTTT--TTA--TTGACT-NAAAT-ATTGTANTTTCTGTTATTCT-CTGGAGT----T--A--------G-TGAAGTT---TCTTTTCT-GTTGATATGTTAAG-TTTCTGATTATGA------------GGTT-TTAAG-------TN-AA----T-A-T-------TACCTATGATG-ATCCG---------------CAAA-AAACATCACATAATCAGTTATTTTCATTCCAGTTTAA-----GAAGTCGACAA-TT-AGTAGA-TAATT-A--A--ANAA---ACAATCATT-----GTATCGCTATGGCGATT--AC-G----TN-----ACGTAT-G-AT-TGTAN-CAACAT-----TN---TTTTT-TGAAA--AAAAATTAT-NTTAT-----G---AA------AAT---TA-----A-----T-----GT-TACTT-G---ATTTATGTNN----CCATG----GTTACC---ATGAGAA-TAT-C----TGC-ATT-TT----TAGTTTCATGAACGTTTCATT-AATTATAAT-A-TG--TGTTCAC--A-T---ATAAA-T---TTGATTTTCATTAGAATTTCTATAATAGTGTTATTAAATNTTTCNTAAATTAATCATAAAAA--AAA----CCCAAATAT-TTTGTTCTA-------AA--C--TTT-AAAATCTACTACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCATA---TTTGTGTCTTCAACAATAACTTCCATCAGGGATCCAGCAGAT--------------AGTCTGCTA-----------CGAAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( gi|3 ) : AAAAA-ATTAGAA--AAA--GCTCTTAAAAAGAAA----AAA----GCTCTAAAA--TAATTCA-AAGAGCA----AAAGAAAA--T-GAGA----AAAAAAT---AGAGCAT--GAAAAAA-AGAA--------------A-ATAAA------A---G--AAAAAAGAATGTAAATA----TATA-----TGT---ATAAAAAAAA---GC---ATG--------T-----------------ATT-------C--------TATC-----TG---TATGTT--------A--TT----------------GT-------A---------------GTTCTATGGATTTCTGGGACAACCCTCTAACTAGCGTTCAATGAAAT--------TGTTT----TG-T--A----AAT---AT------CAAAT-TT-----------TGTAATCATT--TT--G------------G--TAAGT--ATTTTAG---------TATATTT-------T-ATTT--TGGTATAATTTATTTT---AGGTGGATA-CT--GTTT-ATCC-----TATA--------------A-GCTAAA----TTATTTTGT-AAGTAATGT---TTT-GACAATTT-TTGGTTGATGC-------T---G---------T-TTTT--TTA--TTGCCT-TAAAT-ATTGTATTTTCTGTTATTCT-CTGGAGT----T--A--------G-TGAAGTT---TCTTTTCT-GTTGATATGTTAAG-TTTCAGATTATGA------------AGTT-TTAAG-------TA-AA----TAACTCACCGGGTACCTATGATG-ATCC----------------CAAA-AATCATCATATAATCAGTTATTTTTATTCCGGTTTAA-----AAAGTTGACAA-TA-AGTAGA-TAACTTA--A--AGAA---ATA--TATT-----GTATTACTATGGCAATT--AT-G----TG-----ACGTATGGAATCTGCAT-CAACATG-GGGTG---TTTTT-TGAAA--AAAAATTAT-GTTAT-----G---AA------AAT---TA-----A-----T-----GTCTACTT-G---ATTTACATAT----CCATA----GTTACC---ATGAGAA-TAT-A----TGC-ATT-TT----TAGTGTCATGAATG-TTCATT-AATTATAATAAATG--TGTTTAC--A-A---ATAAAGT---TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAAATTATTCAT-------AAATTTTTTTTAATAT-TTTGTTCTA-------AA--C--TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATTA---TTTGTGTCTCCACCAACAATTTCCATC-------------AT--------------A-TCTGCTG-----------CAGAACTACCTGACATTTCCTTGACTAAATT
gi|2 : AAAGA-ATAAGAATAAAA--GCTCTTAAAAAAAAAGAA-AAA----GCTCTAAAAG-TAA---A-AAGAGCA----AAA-AAAG--T-AAAA----AAAAAAT---AGAGCTC--TAAAAAA-AGAA--------------A-AGAAA------A---G--AAGAGA----------------------------------AAAAAA--------ATG--------T-----------------TTT-------C--------CATCATTC-TG---TATGTT--------A--AT----------------GT-------ATAAAAAATT------GGTCTATGGATTTCTGGGACAACCCTC-A---AGAATTTGATAAGGT--------TATGT----CA-TTAA----AAT---AC------TAAATATTTTCTGGAGCAATGTAATTATT--TT--GTAAACCTCAAAAGCTTAATT--ATTTAAG---------T-CATTTTGGTAAGT-ATTT--TGGTATAATTTATTT------GTGGATA-CT--GCTA-ATTCTTTTTTGTA--------------ATACCAAAAGGCTTTTTTTGT-AAGC--CGTA--TTT-GGC-ATTT-TTTGTTGATACTGCGTAAT---G---------T-CTTT--TTA--TTGAAT-AAAAT-ATTGTACTTTCTGTTATTCT-CTGGAGT----CTAA--------G-TGAAGTT---TCTTTTCT-GTTGATATATTAAG-TTT--AATTATGG------------AGT
gi|4 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAATATGAAAA--AAA--GCTCTAAAGAAAAAA----AAATAAAGCTCTAAAA--AAAT--ATAAGAGCAC---AAAGTAAA----GA-A----AAAAAATGTAAGACCATTAAAAAAAA-AGAAGACTCAAAATAAAAA-ATAAAGCTCTAA---A--AAAAAAGAAAG-AAATAAGGCTAAAAAAACTCT---AAAAAAGAAAATAGCCCAATG--------TTTTTGGT----------ATTAT-----T--------TATC-----TG---TATGTTGTTATGTTA--TT----------------GT-------ATATTTGTATAAAAGAGTTTTGTAAACTTCTGGGATGATCCT---------------TGAAAT--------T--TT----TGAT--A----GATTATAT------CA----TT-----------AGAAATAAT------------------------AAAT--GTTTT-----------------C-------T-CTTT--CAATGAAATT-ATTTT-----GTA-AT------------TCC-----CA-A--------------A-GCTAAA----TTATTCTGT-AAGTCATAT---TTT-AGTAAATT-T--GTTTGTTC-------T---A---------T-TTTT--T-A--TTAATTATAAAT--TTGTATTTTCTGTTATTCT-CTGGAAT----T--A--------G-TGAATTT---TTTTTTCT-GTTGATATGTTAAG-TTCCTGATTATGAGGTAATTAGGGTGGTT-TTAAG-------TT-AA----T-----------TACCTATGATG-ATTCTG--------------CAAA-A--CATCACATAATCAGTTATTTTCATTCCAGTTTAA-----GAAAT---CAAGTT-AGTAGATTAA--TA--ATTAACA---AT---CATT-----TTATCACCATGGTGATT--A--GATCTTT-----ACGCATGGCATATGTAA-CAcagttatcttcattccagtttaagatgtcaacatttactaaaagcaatactatggcatgtgtaccaacatgttttttttttgtatatttattttatgtaaagacaactaataccgtgtctacttgatttatgttaccatagttaccatgagaatatctgaacttttagtttcataaacgtttcattaattgtgattgtgttaacatatacattttctataaaagtgttattaaatttttcataaattaatcataaaaaaaatcaaaatattttattctaaactttttaaacctacaacaataatgtgttttgccttaaagtctttgtttcctttcatatttgtgtctctaacaacaacttccatcggggatcccgcagacagtcagaaacagaactccctgacatttcctggactaagt
gi|7 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaAAAAA-AGAAGAA--AAA--A-----AGAAAAAAG----AAA----GGTCTAAAA---AAT-AA-AAGAGCATAAAAGAGAAAACAT-AAAACTCTAAAAAAT---A----ATT-GAAAGAACAGAA--------------A-A--AA------A---G--AAAAAAAAAAGAAATTA-----ACA-----GGC---ACAAAAAATT---AC---ATG--------TTTGGTACTTATGGCCTTATTGGGTGTCT--------TGTC-----TG---TATGTT--------A--CT----------------GT-------AA--------------GGTCTAACAATTTCATGGACAACTCTCAAATTA----TTAATAAAATGAGACTTATGTTT----TC-T--CTTCCAAT---ATAATTCCCAAAA-CC-----------TA-AATTATT--TTCAA------------G--CAATTTCATTATAGATCTAAATATATATTT-------TTATTTCTTG-------TTATTTTTCAAAG-AAATA-ATCAGTTTTACCC-----AATC--------------A-ACT----------TTTTATCAAGTCATTTATATTT-GGAAACTG---GGTTAATCC-------A---G---------T-TAA-----A--TTGACT-AAAAT--TTGTAATCTCTGTTATTCT-CTGGAGT--------------------AAATA---T-TTTTCT-GTTGATAAGTAAAG-CTTCTGATTAAGA------------GGTA-ATTAG-------TG-TGGTTTTAACTTAAT---TACCTATGATGTGTCTG---------------CAAA-A--CATCACATCATCAGTTATTTTCATTCCAGTTTAA-----GAAATTCACAA-TT-AGTAGA-TAATT----A--ACAA---ACAATTATT-----GTGTTGCTATGGTGATCAGATAG----TT-----ATATAT------TACATATAACATC-TTGTT---TTTTTGTGCAT--ACAAA-TAT-TTTATGTAGAG---AAC-----AAT---TA-----A-----T-----A---ACTTGG---ATATGTGTAT-----TAT-----GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TT----TAGTTTAATGAATGTTTCATT-AGTTATAAT---TGCTTTTTTAC--A-T---ATAA--------GATTTTCATTcc
gi|1 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaAAAAG-AACAGAA--AAAATGCTCTAAAGAAAAAAGTATAAA----GCTCTAAAAAATAATTGA-AAGAGCA----TATTAAAA--A-AAGA----AGAAAA-------------AAAAGAA-AGAA--------------ATATAGA------GCACG--AAAAAAAAGT----ATA----TATC-----TGTTACAAAAAAAAAA---ACA--ATG--------CCCAAG------------ATT-------CTTGTTATTTATCAGTATTGTATTATGTT--------A--CT----------------GT-------ATAAAAAT--------GGTCTATAAACTTCTGGGACGACCCT---------------TGAAAT--------TA--T----TGAT--A----AA----GT--------AAT-TT---------------ATTATTTATT--G------------A--AAATT--A--TAAA---------TATTTTC-------T-CTTT--CAATGTTA-TTATTTT-----GT-AAT------------TCG-----AAAA--------------A-GCTAAA----TTATTTTTT-AAGTCATAT---TTT-GAC----------TTGATTT-------T---C---------T-AATT--TTG--TTGACT-GAAAT-ATTGTATTTTCTGTTATTCTGTTTCAGC----T--A--------A-TGAGGT-----------------A---GTTAGG----------ATG--------------GTT-TTAAG-------TT-AA----T-----------TATTTATGATG-ATCCAG--------------CAAA-A--CATCACTTAATCACTTATT
gi|11 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaCTCT--AAAAAAAT----AAA----GCTCTAAAAAATAACTGA-AAGAGCA----AAGGAAAA--TGGAAA----AAAAAAT---AGAGCAT--GAAAAA----AA--------------A-ATAAA------A------AAAATATAGT---AATA----TA-A-----TTT----TAAAAACA-----C---TTG--------T-----------------TTT-------C--------TATA-----TG---AATGAT--------AATTT----------------GTATATAAAA---------------GATCTATGGTTCTCTGGGACGACCCTCTAATTA---T----TGACAT--------TTTTT----TT-T--A----GAT---agatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|9 : A----AAAAAAAA--A-AAAA----AAAAAAA---AAAGCAC--AAAAAAA-AAAA--------------A-AAAAC------A---GCTAAAAAAAAA-----------------------------AAAAAGAA---GCTC-ATAATTTTTGTT-----------------ATT----------------TATT-----TG---TATGTT--------A--TTTTGTTATTGTATAATTGT-------ATAAAAAA--------GTTTTATAAACTTCTGGGACGACCCTCGAA--AGTATT-GATAACAT--------AATAT----CA-T--A----AA-------------AAAT-----------------AAT---------------------------AAAT--ATT---G---------TCTATTT-------C-ATT-------GTAATT-ATTTT---G----------T--ATTT-ATG------TA-A--------------A-GCTTAA----CTATTTTGT-AA-TCATAT---TTTCGTAAATTTATTTGTGGATAC-------T---GGATATTCTAT-TTTT--TTA--TTGACTATAAATGATT----TTTTTGTTATTCT-CTGGAAA----T--ATAAAATAAG-TGAAGTT---TCTTTTCT-GTTGATATAATAAG-TTTCTGATTATGAGGTAATTAGGGTGGTT-TTAAG-------TT-AA----T-----------TGCCTATGATG-ATCC----------------CACA-AAACATCACATCATCAGTTATTTTCATTCCAGTTTAA-----GAAATC--CAGTTATAGTAGA-TTATTTA--A--ACAA---ACAATCATT-----GTATCACTACAGCGATT--AG-G----TC-----AT-TACAGA---TG--G-CAA-ATGTAAATC---TTTTT-TTATATTAAAAGTCAT-ATTAT-----G---AAAAGAC-AAT---TAATAACA-----T-----GTATATTT-G---ATCTATATtatgtcattaaaataaaatatatatgctttctcattcaatgaaaaaaaaaaattatttttgcaagtcagttggtaagtattttggtataatttatttaaaatggatactgcatattctatattgcaattcccgaaagttaaattattttgtttatcatgttttggaaagtttttgtggatgctgtttatttattgtcttaaatattgaaatttctattattctctggagttatatagtgtagttaagtcttttctgttgatatgtcaagttttcattatgaagtaattacagtggtttaagtttacacatgatgatccaacaaaacatcatacacttggt
gi|5 : aa-----TA---TATATT--------A--TT----------------GT-------ATAAAAAT--------GGTCTATAAATTTCTGGGACGACCCTC-AACTTAC--TGAAAAAAAG--------AGTTTCAACTG-C--A----ACT---CC------CAAAA-CC-----------TA-AATTATT--TT------------------CAAAT--ATTTTTC---------TATAT---------------------ATATTCTTTTTA---AAGTA-ATAACA--GTTT------------TA-----------------CCAAA----TCA--------AGTAAT------TT-----ATTT-TTGG---ATAC-------TAGGG---------TATTCTACTTAAATTGATT-AAAAT--TTGTATT--CTGTTATTCT-CTGGAGT----A--A--------AATAAAGTT---TCCTTTCTTATTGATATGTAAAG-TTTCTGATTATGA------------GGTTATTAAGGTTTTATTA-AA----TTAAT-------TACCTATGAAG-GTCCG---------------CAAA-A--CATCACATAATCAGTTATTTTCATTCTATTTTAA-----GAAATTGACAA-TT-TGTAGA-CAATT----A--ACAA---ACAATTATT-----GTATCGCTATGGTAATC--AG-A----TGGTTACACGT-T---ACATGTAC-CATCTTA-TGTTGTTTTTTTT-TGCAT--CCAGA-TAT-TTTAT-----G---AAGAGGACAAT---TA-----A-----T-----A---ACTT-G---G-----ATAC----CTGTATTCTGTTACC---ATAACAA-TAT-C----TGC-ATTATT----TAGTtaccaacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
gi|11 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaaaaaaataattaaaagggcataaaaaagaaaataaagctctaaaaaaataattaaaagagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacagagcacaaaacatatcatatcatatagtacttatggccttattggtcttcttgttaaaAATTATT--TT--T------------G--CAAGT--CAGTTGG---------TAAGT-----------ATTT--TGGTATAATTTATTTA---AAATGGATA-CT--GCAT-ATTC-----TATATTGCAATTCCCGAAA-GTTAAA----TTATTTTGT-TTATCATGT---TTT-GGAAAGTT-TTTGTGGATGC-------T---G---------T-TTAT--TTA--TTGTCT-TAAAT-ATTGAAATTTCTATTATTCT-CTGGAGTTATAT--A--------G-TGTAGTTAAGTCTTTTCT-GTTGATATGTCAAGTTTTC--ATTATGA------------AG----TAAT-------TACAG----TGGTTTA-AGTTTACACATGATG-ATCC----------------AACA-AAACATCATACACTTGGTttattattggtttttttttacatattaagttttc
gi|10 : ctctaaaaaaataaagctctaaaaaataactgaaagagcaaaggaaaatggaaaaaaaaatagagcatgaaaaaaaaataaaaaaaatatagtaatataattttaaaaacacttgttttctatatgaatgataatttgtatataaaagatctatggttctctgggacgaccctctaattattgacatttttttttagattatgtcattaaaataaaatatatatgctttctcattcaatgaaaaaaaaaCT-GTTGATATGTTAAG-TTTTTGAGCATTA------------AGTAATTAGGGTGGTT-TA-AAGT--TAATT--------ACCTATGATG-ATCCACATATATCATCTAGTCATATAAACATCATATAATCAGTTATTTTCATTCCAGTTTAA-----GAAGCCTACAA-TT-AGTAGA-TAGCAAAACA--AAAA---ATA--TATT-----GTATCCCTATGGCAATA--AG-A----TGATT--ATGTATGGCATCTGTAT-T----------TA---TTTTG-CAAAA--AAAAATTAT-GTAAA-----G---AA------AATGAATA-----ACT---T-----GTCAACTT-G---ATTTATGTGA----CCATG----GTTACC---ACAAAAATTAT-C----TAT-ATT-TT----TAGTTTCATGAATATTTCATT-AGTTATAATAATTG--TGTCCAC--ATAATTATAAAGT---TTGATTTCTATTACAATTTCTATAATA--G-TATTAAATCTTTCATAAATTATTTATAAAAAAAAAA-----TCAAATAT-TTTGTTCTA-------AA--C--TTT-AATAGCTACAACAATCATGAC--AGTTTTGCCATAAAA-TATCTTGGTTTCCTAA----TA---TTTGTGTTTCCAACATTAACTTCCATC-------------ATGGATCCTGCAGACAG-TCTGCTA-----------CAGAACTTCCTGATATT--CCTGACTAA
gi|2 : TCAGTTATCTTCATTCCAGTTTAA-----GATGTCAAC-A-T---------TTACTAA--A--AGCA---A-----------------TACTATGGC------AT-G-----------------------TGTAC-CAACAT--GTTTT---TTTTT-TG-----TATATTTAT-TTTAT-----GT--AAAGAC--AAC---TA-----ATACCGT-----GTCTACTT-G---ATTTATGTTA----CCATA----GTTACC---ATGAGAA-TAT-C----TGA-ACT-TT----TAGTTTCATAAACGTTTCATT-AATTGTGAT---TG--TGTTAAC--A-T---ATA---------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAAATTAATCATAAAAA--AAA----TCAAAATAT-TTTATTCTA-------AA--CTTTTT-A-AACCTACAACAATAA----TGTGTTTTGCCTT--AA-AGTCTTTGTTTCCT--TTCATA---TTTGTGTCTCTAACAACAACTTCCATCGGGG---------AT----------------CCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAGT
gi|1 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgaaagaataagaataaaagctcttaaaaaaaaagaaaaagctctaaaagtaaaaagagcaaaaaaagtaaaaaaaaaatagagctctaaaaaaagaaaagaaaagaagagaaaaaaaatgttttccatcattctgtatgttaatgtataaaaaattggtctatggatttctgggacaaccctcaagaatttgataaggttatgtcattaaaatactaaatattttctggagcaatgtaattattttgtaaacctcaaaagcttaattatttaagtcattttggtaagtattttggtataatttatttgtggatactgctaattcttttttgtaataccaaaaggctttttttgtaagccgtatttggcattttttgttgatactgcgtaatgtctttttattgaataaaatattgtactttctgttattctctggagtctaagtgaagtttcttttctgttgatatattaagtttaattatggagTTTAATACTAAAAGT-AATAT-TA-AGTATA-CAATT----A--ATAACTTGTA--CATTTAAATATGTTACCATGG---TT--AC-AA---TG-----A-GTAT---ATCTGCAT-TATCA-------G---TTTTG-TGAAA--ACTTATTAC--TTAT-----------------AAT---T------G-----T-----GTTCAC-------ATTTAAAC-T----CATTA----ATT--T---TTTAGAA-T-------------TT-TTATCATAGTGCTATTAA-A-TTGATTGAATCATAAAAAAT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttaagttaattatttatgatgatccagcaaaacatcacttaatcacttattagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttt---TTTTT-TAATACTAAAAGTAAT-ATTAA-----GTATAC------AAT---TA-----A-----T-----A---ACTT-GTACATTTAAATATGTTACCATG----GTTACA---ATGAGTA-TAT-C----TGC-ATT-AT----CAGTTTTGTGAAAA-CTTATT-ACTTATAAT---TG--TGTTCAC--A-T---TTAAACTCA-TTAATTTT--TTAGAATTTTTATCATAGTGCTATTAA--ATTGATTGAA----TCAT-------AAAAAATCCCTA------TTGTTCTA-------AAACT--TTT-AAAATCT------------------TTTTGCCAT-AAC-AGTCTTGATTTCCTTTC-ATT----TTTGCATCTTCAACAAGAACTTCCATC-------------Accctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|13 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttaagttaattatttatgatgatccagcaaaacatcacttaatcacttattagatcagatcattgcatatgattgcatatcatggcatatgtaacatcATTATTGTAAA-----G---AC------AAT---TA-----A-----TAACATGTATA-TG-G---ATTTATGTTA----CAATG----GTAACAGTAATGGGAA-TAT-C----TGC-ATT-TT----CAGTTTCATGACTGTTTCATT-AATTATAATCA-----TGTTCACATA-A---AAAAAATATGTTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAA------TTAATTGAATCAT-------AAA--------AAAAA-AATG----A-------AA------TT-AAAATCTACTACA---ATGG-TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCATA---TTTGTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGAT--------------AGTCTGCTA-----------CGAATCTCCCTGACATTTCTTAGACTAAggga
gi|9 : gtTATATTTGATCTATATTACCAA--C--TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT
gi|6 : aaaaaaaaaaaaaaaaaaaaaaaaaagcacaaaaaaaaaaaaaaaacagctaaaaaaaaaaaaaagaagctcataatttttgttatttatttgtatgttattttgttattgtataattgtataaaaaagttttataaacttctgggacgaccctcgaaagtattgataacataatatcataaaaaataataaatattgtctatttcattgtaattattttgtatttatgtaaagcttaactattttgtaatcatattttcgtaaatttatttgtggatactggatattctatttttttattgactataaatgatttttttgttattctctggaaatataaaataagtgaagtttcttttctgttgatataataagtttctgattatgaggtaattagggtggttttaagttaattgcctatgatgatcccacaaaacatcacatcatcagttattttcattccagtttaagaaatccagttatagtagattatttaaacaaacaatcattgtatcactacagcgattaggtcattacagatggcaaatgtaaatctttttttatattaaaagtcatattatgaaaagacaattaataacatgTATATTTGATCTATATTACCAA--C--TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTTTAC-ATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAAT--------------AGTCTGCTA-----------CAAAACTCCCCGACATTCCCCCG-CCAAACTtacattaaattt
gi|8 : taaatctttttttatattaaaagtcatattatgaaaagacaattaataacatgT-AAAATCTACTACAAT---GGT-GTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCATA---TTTGTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGAT--------------AGTCTGCTA-----------CGAATCTCCCTGACATTTCTTAGACTAAagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 11 3333333 1111 22222222 11111 1111 1111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33333333333333333333333333333 2222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111 3333333333333 1111 11 222222222 11111 3333333333333333 1111 0000000000000000000000000000000000000000000000000000000000000000000000000 444444444444444444444444444 11111111 3333333333333333333333333333333333333333333333333333333 111 777777777777777777777777777777777777777777777 1 1111 111 11111 44444 1111 55555555555555 1111111111 222222 222222 7777777777777777777777 3333333 1 2222222 222
lowQualScore : 1 99 55 99 5 1 666 1111111 5 4 77 777 8888 88888888 1 88888 5555 1 4 8888 5 5 6666 888 888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 88888888888888888888888888888 1111111111111111 5 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 5 5 5 777 5 88888888888888 3 1 4444444444444 5 66 0 66 0000 11 333333333 88888 5 2222222222222222 2222 1 4 4 777 4 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111 4 4 000000000000000000000000000 88 66 0 5 99999999 1 99 3 5 44 0000000000000000000000000000000000000000000000000000000 1 1 777 1 3 1 666666666666666666666666666666666666666666666 0 888 0000 22 8 000 5 44444 5 5 4 1 22222 99 4444 33333333333333 1 44 1 0 6666666666 000000 888888 2222222222222222222222 1 7777777 77 0 5 3 8888888 11 555 888 5 11 3 0 7
lowQualScore : . .. .. .. . . ... ....... . . .. ... .... ........ . ..... .... . . .... . . .... ... ... ................................................................................................................. ............................. ................ . ............................................................................................................................................................................................................................... . . . . ... . .............. . . ............. . .. . .. .... .. ......... ..... . ................ .... . . . ... . . ... ......................................................................... . . ........................... .. .. . . ........ . .. . . .. ....................................................... . . ... . . . ............................................. . ... .... .. . ... . ..... . . . . ..... .. .... .............. . .. . . .......... ...... ...... ...................... . ....... .. . . . ....... .. ... ... . .. . . .
lowQualScore : 0 22 88 22 7 9 111 7777777 7 3 99 333 1111 88888888 4 11111 6666 6 8 9999 0 0 6666 888 888 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111 2222222222222222 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 0 0 6 000 0 66666666666666 0 0 5555555555555 0 99 1 99 6666 00 000000000 22222 0 1111111111111111 1111 4 4 4 888 4 1 888 2222222222222222222222222222222222222222222222222222222222222222222222222 4 4 333333333333333333333333333 66 99 4 0 22222222 0 22 1 0 55 6666666666666666666666666666666666666666666666666666666 0 6 999 6 2 0 888888888888888888888888888888888888888888888 0 888 6666 00 9 000 7 33333 7 7 8 7 00000 22 2222 22222222222222 0 00 0 8 1111111111 999999 000000 0000000000000000000000 9 1111111 99 0 0 8 4444444 55 111 888 7 99 3 7 5
consensus : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA--------AAAGAAAA--T--AAAA----AAAAAATAGAGCAC-GAAAAAA-AGAAA-AN---AAAA---GAAA---AAAAAA----AATAT-AT--AT-TA---A-----A-AAAAAA--GC-----ATG--T------------TT---------------ATTG------CTATC-----T--------G---TATGTT--------A--TT----------------GTATA-------AAAA--NGGTCT-ATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T--A----AAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTTAG---------TATATTTT-ATTTCGGTGTAATTTATTTTAA-GTA-ATA-C---GTTT-ATCCNAT--------------AAGCTAAATTATTTTG-T-AAGTCAT--AT-TTTGGNA--ANTT-T--TTGTTGATNCT---G---------T-TTTT--TTA--TTG----ACTA-AAA------T-ATTGTAN----TTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTGA-TA---TGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG-------TTAA---T--A--T-------TACCTATGATG-A-TCC-GCAAA----------------A---AACATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAAT--TAGTA-GA-TAA-TTAAACAAACAAT-CATTGTATCACT-ATGGCGAT--CAGATCG-TTACGTATGGC-ATATG--TANCA--NC-------GT--------TNTTTTTTGAAN--AAAAATTATNTTAT-----G---AA-A----AAT---TA-----A--T-----GT-T-ACTT-G---ATTTA----TGTNACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAATTATAAT-----TG--TGTTCACA----TATAAAG----T-T---TAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATT-AA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--CTTT-A-AAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA--------AAAGAAAA--T--AAAA----AAAAAATAGAGCAC-GAAAAAA-AGAAA-AT---AAAA---GAAA---AAAAAA----AATAT-A---AT-TA---A-----A-AAAAAA--GC-----ATG--T------------TT---------------ATT-------CTATC-----T--------G---TATGTT--------A--TT----------------GTATA-------AAAA--TGGTCT-ATAAACTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T--A----AAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAANT--ATTTTAG---------TATATTTT-ATTTCGGTGTAATTTATTTTAA-GTAGATA-CT--GTTT-ATCCNAT--------------AAGCTAAATTATTTTG-T-AAGTCAT--AT-TTTGGNA--ANTT-T--TTGTTGATNCT---G---------T-TTTT--TTA--TTG----ACTN-AAA------T-ATTGTAN----TTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTGA-TA---TGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG-------TNAA---T--A--T-------TACCTATGATG-A-TCC-GCAAA----------------A---AACATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAAT--TAGTA-GA-TAA-TTAAANAAACAAT-CATTGTATCGCT-ATGGCGAT--TA---CG-TNACGTATG---AT-TG--TANCA--AC-------AT--------TNTTTTTTGAAA--AAAAATTATNTTAT-----G---AA------AAT---TA-----A--T-----GT-T-ACTT-G---ATTTA----TGTNNCCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAACGTTTCATTAATTATAAT--A--TG--TGTTCACA----TATAAA-----T-T---TGATTTTCATTAGAATTTCTATAATAGTGTTATTAAATNTTTCNTAA-ATT-AA---TCAT-A----AAAAAAA----CC--------CAAATAT-TTTGTTCTA-------AA--CTTT-A-AAATCTACTACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTTCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGAAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA--AAAATGCTC-TAAAGAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA--------TATTAAAA--A--AAGA----AGAAAA---------AAAAGAA-AGAAATAT---AGAGCACGAAA---AAAAAG----TATAT-ATCTGT-TACAAA-----A-AAAAAA--ACA----ATG--CCCAAGATTCTTGTT---------------ATT--------TATCAGTATT--------GTATTATGTT--------A--CT----------------GTATA-------AAAA--TGGTCT-ATAAACTTCTGGGACGACCCT--------------------------TGAAAT--------TA-TT------GAT--A----AA----GT--------AAT--------TT-----------------------ATTA-TTTATT---G-AAAAT---TATAAA---------TATTTTCT-CTTTCAATGTTA-TTATTTT---GTA-AT------------TCGAAA--------------AAGCTAAATTATTTTT-T-AAGTCAT--AT-TTTGAC--------------TTGATTTT---C---------T-AATT--TTG--TTG----ACTG-AAA------T-ATTGTAT----TTTCTGTTATTCTGTTTCAGC----TA--------A-TGAGGT-----------------A-------GTTA-G------GA---T-------------------------GGT------------T-TTAAG-------TTA-------A--T-------TATTTATGATG-A-TCCAGC--A----------------A---AACATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTAT--T--TATGA-TGA-TCCAGCAAAACAT-CACTTAATCACTTATTA-GAT--CAGATCA-TTGCATATG---AT-TGCATATCATGGC-------ATATGTAACATCTTTTTTAATACTAAAAGTAATATTAA-----GTATAC------AAT---TA-----A--T-----A----ACTT-GTACATTTAAATATGTTACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTTATAAT-----TG--TGTTCACA----TTTAAA-----C-TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAATT-------G-ATTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACTTTT-A-AAATCT------------------TTTTGCCATAA--CAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttCT-GTTGA-TA---TGTTA-AGTTTTTGAGCATTAAGT------AATTAGGGT-----GGT------------T-TAAAG-------TTAA---T-------------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATA---AACATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAAT--TAGTA-GA-TAG-CAAAACAAAAAATATATTGTATCCCT-ATGGCAATAAGA---TGATTATGTATGGC-ATCTG--TAT--------------T--------TATTTTGCAAAA--AAAAATTATGTAAA-----G---AA------AATGAATA-----ACTT-----GT-CAACTT-G---ATTTA----TGTGACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAAT--AATTG--TGTCCACATAATTATAAAG----T-T---TGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATT-AT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--CTTT-A-ATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGCA--------AAGGAAAA--TG-GAAA----AAAAAATAGAGCAT-GAAAAA----AAA-AT---AAAA---AAAA---TATAGT----AATAT-A---AT-TT---T-----A-AAAACA---C-----TTG--T------------T-----------------TT-------CTATA-----T--------G---AATGAT--------AATTT----------------GTATA-------TAAA--AGATCT-ATGGTTCTCTGGGACGACCCTCTAAT--TA----TTGACATTTTTTTTTAGAT--------TA-TGTC----A-T--T----AAA---AT------AAAATATATATGCTTTCTCATTCAATG-AAAAAAAAAAATTATTT--TT---G-CAAGT--CAGTTGG---------TAAG---T-ATTTTGGTATAATTTATTTAAA-ATGGATA-CT--GCAT-ATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTG-T-TTATCAT--GT-TTTGGAA--AGTT-T--TTGTGGATGCT---G---------T-TTAT--TTA--TTG----TCTT-AAA------T-ATTGAAA----TTTCTATTATTCT-CTGGAGTTATATA--------G-TGTAGTTAAGTCTTTTCT-GTTGA-TA---TGTCA-AGTTT-TCA---TTA--T------GA------------AGTAATTACAGTGG-T-TTAAG-------T------------T-------TACACATGATG-A-TCC-A-ACA----------------A---AACATCATACACTTGGT
gi|13 : ATTATTGTAAA----G---AC------AAT---TA-----A--TAACATGTAT-A-TG-G---ATTTA----TGTTACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATTATAAT-----CA--TGTTCACA----TAAAAAAAATATGT---TAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAATT-------A-ATTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA----TT-A-AAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--GAATAAAA--GCTC-TTAAAAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGCA--------AAA-AAAG--T--AAAA----AAAAAATAGAGCTC-TAAAAAA-AGAAA-AG---AAAA---GAAG---AGAAAA----AA-----------------------------A---------ATG--T------------TT-----------------T-------CCATCATTC-T--------G---TATGTT--------A--AT----------------GTATA-------AAAAATTGGTCT-ATGGATTTCTGGGACAACCCTC-AA---GAAT--TTGA---------TAAGGT--------TA-TGTC----A-TTAA----AAT---AC------TAAAT---------------------------------ATT--TT--CT---G-GAGCA--AT----G---------TA-ATT---ATTT---TGTAA---ACCTCAA-A-----A-----GCTT-A----AT--------------TATTTAAGTCATTTTGGT-AAGT-----AT-TTTGGTATAATTTAT--TTGTGGATACT---GCTAA-----T-TCTT--TT---TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------G-CGTAATG---TCTTTT-T-ATTGAATAAAATATTGTACTTTCTG----TTA--TTCTCTGGA------------G--------------T-CTAAG-------TGAAGTTT--C--T-------TTTCTGT--TG-A-TAT-ATTAA----------------GTTTAA--TTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATT--TACTA-------------AAAGCAAT----------ACT-ATGGC-------------------ATG------TG--TACCA--AC-------ATGTT-----TTTTTTTTGTAT--AT---TTATTTTAT-----GTA-AAGAC---AAC---TA-----A--TACCGTGTCT-ACTT-G---ATTTA----TGTTACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATTGTGAT-----TG--TGTTAACA----TATA--------------------CATT-----TTCTATAAAAGTGTTATTAAATTTTTCATAA-ATT-AA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTT-TTAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAAA---GTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA--GCTC-TTAAAAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGCA--------AAAGAAAA--T--GAGA----AAAAAATAGAGCAT-GAAAAAA-AGAAA-AT---AAAA---GAAA---AAAGAATGTAAATAT-AT--ATGTAT--A-----A-AAAAAA--GC-----ATG--T-----------------------------ATT-------CTATC-----T--------G---TATGTT--------A--TT----------------GTA----------------GTTCT-ATGGATTTCTGGGACAACCCTCTAAC--TAGCGTTCAA---------TGAAAT--------TG-TTTT----G-T--A----AAT---AT------CAAAT--------TT----------TGTA---------ATCA-TT--TT---GGTAAGT--ATTTTAG---------TATATTTT-ATTTTGGTATAATTTATTTTAG-GTGGATA-CT--GTTT-ATCCTAT--------------AAGCTAAATTATTTTG-T-AAGTAAT--GT-TTTGACA--ATTT-T--TGGTTGATGCT---G---------T-TTTT--TTA--TTG----CCTT-AAA------T-ATTGTAT----TTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTGA-TA---TGTTA-AGTTTCAGA---TTA--T------GA------------AGT------------T-TTAAG-------TAAA---T--AACTCACCGGGTACCTATGATG-A-TCC--CAAA----------------A---ATCATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAAT--AAGTA-GA-TAACTTAAAGAAATA---TATTGTATTACT-ATGGCAAT--TA---TG-TGACGTATGGA-ATCTG--CATCA--AC-------ATGGGG----TGTTTTTTGAAA--AAAAATTATGTTAT-----G---AA------AAT---TA-----A--T-----GTCT-ACTT-G---ATTTA----CATATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATTATAATAAA--TG--TGTTTACA----AATAAAG----T-T---TAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATT-AT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--CTTT-A-GAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA--GCTC-TAAAAAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACCATTAAAAAAAAAGAAGA--CTCAAAAT---AAAAAATAAAGCTC-TAAAAAA-AAAGA-AA---GAAA---TAAGGCTAAAAAA----ACTCT-A---AA-AA---A-----G-AAAATA--GCCCA--ATG--T------------TTTTGGT----------ATTAT-----TTATC-----T--------G---TATGTTGTTATGTTA--TT----------------GTATATTTGTATAAAA--GAGTTTTGTAAACTTCTGGGATGATCCT--------------------------TGAAAT--------T--TTTG----A-T--A----GATTATAT------CA-----------TT----------AG-A---------AATA-AT----------AAAT--GTTTT-----------------CT-CTTTCAATGAAATT-ATTTT---GTA-AT------------TCCCA---------------AAGCTAAATTATTCTG-T-AAGTCAT--AT-TTTAGTA--AATT-T----GTTTGTTCT---A---------T-TTTT--T-A--TTA----ATTATAAA------T--TTGTAT----TTTCTGTTATTCT-CTGGAAT----TA--------G-TGAATTT---TTTTTTCT-GTTGA-TA---TGTTA-AGTTCCTGA---TTA--T------GAGGTAATTAGGGTGGT------------T-TTAAG-------TTA-------A--T-------TACCTATGATG-ATTCT-GC--A----------------A---AACATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGT--TAGTA-GATTAA-T--AATTAACAAT-CATTTTATCACC-ATGGTGAT--TAGATCT-TTACGCATGGC-ATATG--TAACA--att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA--AAA--GGGCATAAAAAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATT--------A--------AAAGAGCA--T--NNNN----NNNNNNNNNNNNNN-NNNNNNN-NNNNN-NNNTGAACA---GAGC---ACAAAA----CATATCAT--AT-CA---T-----A-TAGTAC--TT-----ATGGCC------------TT---------------ATTGGT----CT-TC-----TTGTTAAATA---TATATT--------A--TT----------------GTATA-------AAAA--TGGTCT-ATAAATTTCTGGGACGACCCTC-AACT-TA----CTGA---------AAAAAA--------GAGTTTCAACTG-C--A----ACT---CC------CAAAA--------CC----------TA-A---------ATTA-TT--TT-----CAAAT--ATTTTTC---------TATAT----AT---------ATTCTTTTTAAAGTA-ATAACA--GTTT-------T--------------A--CCAAATCA---------AGT-A---AT-TT--------ATT-T--TTG--GATACTAGGG---------TATTCTACTTAAATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGT----AA--------AATAAAGTT---TCCTTTCTTATTGA-TA---TGTAA-AGTTTCTGA---TTA--T------GA------------GGT------------TATTAAGGTTTTATTAAA---TTAA--T-------TACCTATGAAG-G-TCC-GCAAA----------------A-----CATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAAT--TTGTA-GA-CAA-TT-AACAAACAAT-TATTGTATCGCT-ATGGTAAT--CAGATGG-TTACACGTT---ACATG--TACCA--TCTTATGTTGT--------TTTTTTTTGCAT--CCAGA-TATTTTAT-----G---AAGAGGACAAT---TA-----A--T-----A----ACTTGG---ATACC----TGTATTC-T-GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTTcc
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATT-AAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--CTTTTA-AAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTattattggtttttttttacatattaagttttc
gi|7 : AAAAAAGAA--GAA--AAA---------AAGAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TAA----AAGAGCATAAA----AGAGAAAACAT--AAAACTCTAAAAAATA----ATTGAAAGAACAGAAA-A-----AAA---GAAA---AAAAAA----AG-A--A---AT-TA---ACAGGCACAAAAAATTAC-----ATG--T------------TTGGTACTTATGGCCTTATTGGGTGTCTTGTC-----T--------G---TATGTT--------A--CT----------------GTA------------A---GGTCT-AACAATTTCATGGACAACTCTC-AAAT-TA----TTAA---------TAAAATGAGACTTATG-TTTT----C-T--CTTCCAAT---ATAATTCCCAAAA--------CC----------TA-A---------ATTA-TT--TTCAAG-CAATTTCATTATAGATCTAAATATATATTTTTATTTCT-TGTTATTT--TTCAA-AGAAATA-ATCAGTTTTACCCAAT--------------CAACT------TTTTA-TCAAGTCATTTATATTTGGAA--ACTG-G----GTTAATCCA---G---------T-TAA-----A--TTG----ACTA-AAA------T--TTGTAA----TCTCTGTTATTCT-CTGGAGT------------------AAATA---T-TTTTCT-GTTGA-TA---AGTAA-AGCTTCTGA---TTA--A------GA------------GGTAATTAGTGTGGTT-TTAAC-------TTAA---T-------------TACCTATGATGTG-TCT-GCAAA----------------A-----CATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAAT--TAGTA-GA-TAA-TT-AACAAACAAT-TATTGTGTTGCT-ATGGTGAT--CAGATAG-TTATATATT---ACATA--TAACA--TCTT-----GT--------TTTTTTGTGCAT--ACAAA-TATTTTATGTAGAG---AAC-----AAT---TA-----A--T-----A----ACTTGG---ATATG----TGTAT-TAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTTATAAT-----TGCTTTTTTACA----TATAA-------------GATTTTCATTagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaT-A-AAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : A--------AAAAAAAA--A--AAAA----AAAAAAAAAAGCAC-AAAAAAA-AAAAA-AA---AACA---GCTA---AAAAAA----AA----------------A-----A-AAAGAA--GCTCATAATT--T------------TT---------------GTTAT-----TTATT-----T--------G---TATGTT--------A--TTTTGTTATTGTATAATTGTATA-------AAAA--AGTTTT-ATAAACTTCTGGGACGACCCTC-GAAAGTA----TTGA---------TAACAT--------AA-TATC----A-T--A----AA-------------AAAT-----------------------A---------AT---------------AAAT--ATT---G---------TCTATTTC-ATT-----GTAATT-ATTTT---GTA----------TTT-ATGTAA----------------AGCTTAACTATTTTG-T-AA-TCAT--AT-TTTCGTA--AATT-TATTTGTGGATACT---GGATATTCTAT-TTTT--TTA--TTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAG-TGAAGTT---TCTTTTCT-GTTGA-TA---TAATA-AGTTTCTGA---TTA--T------GAGGTAATTAGGGTGGT------------T-TTAAG-------TTA-------A--T-------TGCCTATGATG-A-TCC--CACA----------------A---AACATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GATTAT-TTAAACAAACAAT-CATTGTATCACT-ACAGCGAT--TAGGTCA-TTACAGATGGCAAA-TG--TA--A--A------------------TCTTTTTTTATATTAAAAGTCATATTAT-----G---AAAAGAC-AAT---TAATAACA--T-----GTAT-ATTT-G---ATCTA----TATTACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATT-AAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--CTTTTA-AAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 3333333 11111111 11111111 1111 11111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222222222 222222222222 333333333333 1111 1 222222222 11111 3333333333333333 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 44444444444444444444444444 111 111 333333333333333 5555555555555555 11111111 6666666666666666666666666666666666666666666666 1 1111 111 11111 1111 1111111 1111 222222222 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 99 55 99 5 1 666 1111111 5 4 77 777 888 66 88888888 5 77777777 5555 1 4 555 2 5 888 77777777 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 999 1 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 4 5 4 8888888888 5 1 555555555555 2 333333333333 3 0000 0 333333333 88888 5 2222222222222222 2222 1 4 4 777 4 0 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 66666666666666666666666666 2 88 333 5 5 5 666 99 5 8 2 66 444444444444444 33 2 2222222222222222 3 1 33333333 3 1 8888888888888888888888888888888888888888888888 0 888 0000 5 8 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 6 33 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 1 555 888 5 11 3 0 7
lowQualScore : . .. .. .. . . ... ....... . . .. ... ... .. ........ . ........ .... . . ... . . ... ........ ........................................................................................................................................................... . . ... . . ................................................................................................................................................................................................................................. . . . . .......... . . ............ . ............ . .... . ......... ..... . ................ .... . . . ... . . ... ................................................................................ . . .......................... . .. ... . . . ... .. . . . .. ............... .. . ................ . . ........ . . .............................................. . ... .... . . ... . ..... . . . . . . .... ....... . .... ......... . . . . . .. . . ... ...... ...................... . ....... .... . . ....... . ... ... . .. . . .
lowQualScore : 0 22 88 22 7 9 111 7777777 7 3 99 333 111 99 11111111 9 00000000 6666 6 8 000 2 9 888 11111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 666 4 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 5 0 5 8888888888 0 0 888888888888 8 111111111111 4 6666 0 000000000 22222 0 1111111111111111 1111 4 4 4 888 4 1 888 77777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 66666666666666666666666666 0 66 444 0 0 0 555 22 0 5 2 88 888888888888888 55 8 1111111111111111 0 6 11111111 2 0 5555555555555555555555555555555555555555555555 0 888 6666 9 9 000 7 33333 7 7 0 3 6 9 1111 4444444 4 1111 000000000 0 2 0 8 6 66 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 4 111 888 7 99 3 7 5
consensus : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------AAAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAA---AGAA----A---AAAAAA----AATAT-ATAT-T-------A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTT----AG-------TATA---TTTTATTTCGATGTAATTTATTTTAA-GT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------TAT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA-A----------------A---AACATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATGTANCATC-------G---T----TTTTTTTTGA-A-TAAAAATTATNTTA--T-----G-AAN-----A--ATTA-----A--T-----GT---T-ACTT-G---ATT----TATGTTACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------AAAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAA---AGAA----A---AAAAAA----AATAT-ATAT-T-------A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAN--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTT----AG-------TATA---TTTTATTTCGGTGTAATTTATTTTAA-GT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------TAT-TTTGGNA-ANTT--T--TTGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCAAA----------------A---AACATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATGTANCANC-------G---T----TNTTTTTTGA-A-NAAAAATTATNTTA--T-----G-AAA-----A--ATTA-----A--T-----GT---T-ACTT-G---ATT----TATGTNACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAATT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA--AAAATGCTC-TAAAGAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------TAT---------T--AAAA----AAAGAA--------GAAAAAAAAGAAAGAAATATAGAGCACGA---AAAAAA----AGTAT-ATAT-CTGTTACAA-A-A-----AAAAA-A--ACA----ATG--CCCAAGA---------TT-----CTTG------TT-ATTT--------ATCAGTATTGTATTATGTTA----------------C----------------TGTATAAAAAT--GGTCTATAAACTTCTGGGACGACCCT--------------------------TGAAAT--------TA-TT------GAT----AAA----GT--------AAT--------TT-----------------------ATTA-TTTATT---G-AAAAT---TATA----AA-------TATT---TTCTCTTTCAATGTTA-TTATTTT---GT-A-AT------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA----------TAT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------A-TGAGGT------------------A------GTTA-G------GA---T-----------------------------------GGT------------T-TTAAG------TTA-----A--T-------TATTTATGATG-A-TCCAGC--A----------------A---AACATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATGTAACATC------------------TTTTTTAATACTAAAAGTAATATTAAGT-----A-TAC-----A--ATTA-----A--T-----A------ACTT-GTACATTTAAATATGTTACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAA------TTGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCAT--AACAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttCT-GTTG-AT---ATGTTA-AGTTTTTGAGCATTAAG----------T------AATTAGGGT-----GGT------------T-TAAAG------TTAA---T-----------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATA---AACATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGT-------------ATGGCATCTGTAT---------------T----TATTTTGCAA-A-AAAAAATTATGTAA--A-----G-AAA-----ATGAATA-----ACTT-----GT---CAACTT-G---ATT----TATGTGACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGC--A--------AAGGAAA----ATG-GAAA----AAAAAATAGAGCATGAAAAA---AAAATAAA---AAAA----A---TATAGT----AATATAATTT-T-------A-A-A-----AACA------C-----TTG--T---------------TT------T--------CT-ATAT--------G------------AATGATAAT--------------T----------------TGTATATAAAA--GATCTATGGTTCTCTGGGACGACCCTCTAAT--TA----TTGACATTTTTTTTTAGAT--------TA-TGTC----A-T----TAAA---AT------AAAATATATATGCTTTCTCATTCAATG-AAAAAAAAAAATTATTT--TT---G-CAAGT--CAGTT----GG-------TAAG------TATTTTGGTATAATTTATTTAAA-ATGG-ATA--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA----------TGT-TTTGGAA-AGTT--T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------G-TGTAGTTAAGTCTTTTCT-GTTG-AT---ATGTCA-AGTTT-TCA---TTA------------T------GA------------AGTAATTACAGTGG-T-TTAAG------T----------T-------TACACATGATG-A-TCC-A-ACA----------------A---AACATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A-GAC-----A--ATTA-----A--TAACATGTA--T-A-TG-G---ATT----TATGTTACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--GAATAAAA--GCTC-TTAAAAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGC--A--------AAA-AAA----GT--AAAA----AAAAAATAGAGCTCTAAAAAAAGAAAAGAAA---AGAA----G---AGAAAA----AAAAT-GTTT-T-------C-------------------C-----AT--------------------C-----ATT------------CT--------G------------TATGTTA----------------A----------------TGTATAAAAAATTGGTCTATGGATTTCTGGGACAACCCTC-AA---GAAT--TTGA---------TAAGGT--------TA-T---------------------GT------CA------------T----------TA-A---------AATA-CT----------AAAT--ATTTTCTGGAG----------------------CAATGTAA-TTATTTT---GT-A-A------------ACCTCAA--------------AAGCTTAATTATT---T-AAGTCATTTTGGTAAGTAT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------G-CGTAATG---TCTTTT-T-ATTGAATAAAATATTGTACTTTCTG----TTA------------TTCTCTGGA------------G--------------T-CTAAG------TGAAGTTTC--T-------TTTCTGT--TG-A-TAT-ATTAA----------------GTTTA--ATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGG----------------------------------CATGTGTACCAAC-------ATGTT----TTTTTTTTGT-A-T---ATTTATTTTA--T-----GTAAAGAC--A--ACTA-----A--TACC--GTGTCT-ACTT-G---ATT----TATGTTACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA--GCTC-TTAAAAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGC--A--------AAAGAAA----AT--GAGA----AAAAAATAGAGCATGAAAAAAAGAAAATAAA---AGAA----A---AAAGAATGTAAATAT-ATATGT-------ATA-A-----AAAAA-A--GC-----ATG--T----------------------ATT-------CT-ATCT--------G------------TATGTTA----------------T----------------TGTA---------GTTCTATGGATTTCTGGGACAACCCTCTAAC--TAGCGTTCAA---------TGAAAT--------TG-TTTT----G-T----AAAT---AT------CAAAT--------TT----------TGTA---------ATCA-TT--TT---GGTAAGT--ATTTT----AG-------TATA---TTTTATTTTGGTATAATTTATTTTAG-GT-GGATA--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA----------TGT-TTTGACA-ATTT--T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCAGA---TTA------------T------GA------------AGT------------T-TTAAG------TAAA---TAACTCACCGGGTACCTATGATG-A-TCC--CAAA----------------A---ATCATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGT-------------ATGGAATCTGCATCAAC-------A---TGGGGTGTTTTTTGA-A-AAAAAATTATGTTA--T-----G--AA-----A--ATTA-----A--T-----GTC--T-ACTT-G---ATT----TACATATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA--GCTC-TAAAAAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACC--ATTAAAAAAAAAGAAG----ACTCAAAAT---AAAAAATAAAGCTCTAAAAAAAAAGAAAGAA---ATAA----GGCTAAAAAA----ACTCT-AAA----------A-A-A-----GAAAATA--GCCCA--ATG--T---------------TTTTGGTATTA------TTTATCT--------G------------TATGTTG----------------TTATGTTATTGTATATTTGTATAAAAGA--GTTTTGTAAACTTCTGGGATGATCCT--------------------------TGAAAT--------T--TTTG----A-T----AGATTATAT------CA-----------TT----------AG-A---------AATA-AT----------AAAT--GTTTT----------------------CTCTTTCAATGAAATT-ATTTT---GT-A-AT------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA----------TAT-TTTAGTA-AATT--T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------G-TGAATTT---TTTTTTCT-GTTG-AT---ATGTTA-AGTTCCTGA---TTA------------T------GAGGTAATTAGGGTGGT------------T-TTAAG------TTA-----A--T-------TACCTATGATG-ATTCT-GC--A----------------A---AACATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGC-------------ATGGCATATGTAACACC-------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA--AAA--GGGCATAAAAAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATTAAAAGAGC--A--------TNNNNNN----NN--NNNN----NNNNNNNNNNNNNNNNNNNNNTGAACA--------GAG----C---ACAAAA----CATATCATAT-C-------A-T-A-----TAGTA-C--TT-----ATGGCC---------------TT-----ATTGGT----CT--TCTTGTTAAATA------------TATATTA----------------T----------------TGTATAAAAAT--GGTCTATAAATTTCTGGGACGACCCTC-AACT-TA----CTGA---------AAAAAA--------GAGTTTCAACTG-C----AACT---CC------CAAAA--------CC----------TA-A---------ATTA-TT--TT-----CAAAT--ATTTT----TC-------TATA---T---AT---------ATTCTTTTTAAAGT-A-ATAA-C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A----------TAC-TAGGGTA---TT--C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGT----AA--------AATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA------------T------GA------------GGT------------TATTAAGGTTTTATTAAAT-TAA-T-------TACCTATGAAG-G-TCC-GCAAA----------------A-----CATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC---------------ACGTTACATGTACCATCTTATGTTG---T----TTTTTTTTGC-A-TCCAGA-TATTTTA--T-----G-AAGAGGACA--ATTA-----A--T-----A------ACTTGG---ATA----CCTGTATTC-T-GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA--AAA---------AAGAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TA----AAAGAGCATA--------AAAGAGAAAACAT--AAAACTCTAAAAAATA----ATTGAAAGAACAGAAAAAA---AGAA----A---AAAAAA----AG----AAAT-T-------A-ACAGGCACAAAAA-ATTAC-----ATG--TTTGGTACTTATGGCCTT-----ATTGGGTGTCTT-GTCT--------G------------TATGTTA----------------C----------------TGT------AA--GGTCTAACAATTTCATGGACAACTCTC-AAAT-TA----TTAA---------TAAAATGAGACTTATG-TTTT----C-TCTTCCAAT---ATAATTCCCAAAA--------CC----------TA-A---------ATTA-TT--TTCAAG-CAATTTCATTAT----AGATCTAAATATATATTTTTATTTC-TTGTTATTT-TTCAAA-GA-A-ATAATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCATT--------TATATTTGGAA-AC----T--GGGTTAATCCAG------------TTAAATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT------------------AAATA---T-TTTTCT-GTTG-AT---AAGTAA-AGCTTCTGA---TTAAGAGGTAATTAGT------GT------------GGT------------T-TTAAC------TTA-----A--T-------TACCTATGATGTG-TCT-GC--A----------------A---AACATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATAT-------------ATTACATA--TAACATCTT-----G---T----TTTTTTGTGC-A-TACAAA-TATTTTA--TGTAGAG-AAC-----A--ATTA-----A--T-----A------ACTTGG---ATA----TGTGT-ATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : --A--------AAAAAAA----AA--AAAA----AAAAAAAAAAGCACAAAAAAAAAAAAAAAAC---AGCT----A---AAAAAA----AA-------------------A-A-----AAAGA-A--GCTCATAATT--T---------------TT-----GTTA------TTTATTT--------G------------TATGTTATTTTGTTATTGTATAAT----------------TGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC-GAAAGTA----TTGA---------TAACAT--------AA-TATC----A-T----AAA-------------AAAT-----------------------A---------AT---------------AAAT--ATT-------G-------TCTA---TTTCATT-----GTAATT-ATTTT---GT-A-----------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA----------TAT-TTTCGTA-AATT--TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAG-TGAAGTT---TCTTTTCT-GTTG-AT---ATAATA-AGTTTCTGA---TTA------------T------GA------------GGTAATTAGGGTGGTT-TTAAG------TTAA---T-----------TGCCTATGATG-A-TCC--CACA----------------A---AACATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAG-------------ATGGCAAATGTAA-ATC-----------T----TTTTTTAT-A-T-TAAAAGTCATATTA--T-----G-AAAAGAC-A--ATTAATAACA--T-----GTA--T-ATTT-G---ATC----TATATTACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 3333333 22222222222 11111111 1111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222222 222222222222 333333333333 1111 1 222222222 11111 33333333333333 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 55555555555555555555 1 11 333333333333333 5555555555555555 111111111 6666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 99 55 99 5 1 666 1111111 5 4 77 777 888 66 44444444444 1 77777777 5555 1 1 0 33 1 0 77 888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 777 1 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 4 5 4 66 1111111111 5 1 444444444444 2 333333333333 3 0000 0 333333333 88888 5 55555555555555 2222 1 4 4 777 4 0 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 77777777777777777777 4 777 4 88 7777 5 0 5 11 99 5 8 2 66 444444444444444 5 2 5555555555555555 666666666 3 1 5555555555555555555555555555555555555555555555555 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 6 33 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 1 555 888 5 11 3 0 7
lowQualScore : . .. .. .. . . ... ....... . . .. ... ... .. ........... . ........ .... . . . .. . . .. ... ......................................................................................................................................................... . . ... . . ............................................................................................................................................................................................................................. . . . . .. .......... . . ............ . ............ . .... . ......... ..... . .............. .... . . . ... . . ... ................................................................................... . . .................... . ... . .. .... . . . .. .. . . . .. ............... . . ................ ......... . . ................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . . .. . . ... ...... ...................... . ....... .... . . ....... . ... ... . .. . . .
lowQualScore : 0 22 88 22 7 9 111 7777777 7 3 99 333 111 99 22222222222 6 00000000 6666 6 6 8 22 6 2 99 888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 444 4 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 5 0 5 99 9999999999 0 2 000000000000 8 111111111111 4 6666 0 000000000 22222 0 00000000000000 1111 4 4 4 888 4 1 888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 77777777777777777777 4 888 4 66 6666 0 0 0 55 22 0 5 2 88 888888888888888 9 4 6666666666666666 777777777 2 0 1111111111111111111111111111111111111111111111111 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 6 66 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 4 111 888 7 99 3 7 5
consensus : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------A--AAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTTAG-------TATA---TTCTATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA--T----------AT-TTTGGTA--ANTT-T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTAN----TTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTGA-TA---TGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GC-----------------A-AA---A-CATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAAT--TAGTA-GA-TAA-TTAAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATGTAACATC-------G---T----TTTTTTTTG--A-A-TAAAAATTATNTTA--T-----G----A-----ACA--ATTA-----A--T-----GT---T-ACTT-G---ATT----TATGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------A--AAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTTAG-------TATA---TTTTATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA--T----------AT-TTTGGTA--ANTT-T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTAN----TTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTGA-TA---TGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA----------------A-AA---A-CATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAAT--TAGTA-GA-TAA-TTAAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATGTANCATC-------G---T----TTTTTTTTG--A-A-TAAAAATTATNTTA--T-----G----A-----ANA--ATTA-----A--T-----GT---T-ACTT-G---ATT----TATGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA--AAAATGCTC-TAAAGAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--AT-------ATTAAAAAA----AG--AAGA----AAAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGT-TACAA-A-A-----AAAAA-A--ACA----ATG--CCCAAGA---------TT-----CTTG------TT-ATTT--------ATCAGTATTGTATTATGTTA----------------C----------------TGTATAAAAAT--GGTCTATAAACTTCTGGGACGACCCT--------------------------TGAAAT--------TA-TT------GAT----AAA----GT--------AAT--------TT-----------------------ATTA-TTTATT---G-AAAAT---TATAAA-------TATT---TTCTCTTTCAATGTTA-TTATTTT--GT-A-AT-------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA--T----------AT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTAT----TTTCTGTTATTCTGTTTCAGC----TA--------ATGAGGT-----------------A-------GTTA-G------GA---T-----------------------------------GGT------------T-TTAA-GTT------A-------A--T-------TATTTATGATG-A-TCCAGC-----------------A-AA---A-CATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTAT--T--TATGA-TGA-TCCAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATGTAACATC------------------TTTTTTA--ATACTAAAAGTAATATTAAGT-----A----T-----ACA--ATTA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAA------TTGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCAT--AACAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttC-TGTTGA-TA---TGTTA-AGTTTTTGAGCATTAAG----------T------AATTAGGGT-----GGT------------T-TAAA-GTT------AA---T-------------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAA---A-CATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAAT--TAGTA-GA-TAG-CAAAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGT-------------ATGGCATCTGTA---------------------TTTATTTTGCAA-A-AAAAAATTATGTAA--A-----G----A-----AAATGAATA-----ACTT-----GT---CAACTT-G---ATT----TATGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGC--A--------A--AGGAAA----ATG-GAAA----AAAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAA--TTT-T---A-A-A-----AACA------C-----TTG--T---------------TT------T--------CT-ATAT--------G------------AATGATAAT--------------T----------------TGTATATAAAA--GATCTATGGTTCTCTGGGACGACCCTCTAAT--TA----TTGACATTTTTTTTTAGAT--------TA-TGTC----A-T----TAAA---AT------AAAATATATATGCTTTCTCATTCAATG-AAAAAAAAAAATTATTT--TT---G-CAAGT--CAGTTGG-------TAAG------TATTTTGGTATAATTTATTTAAAATGG-AT-A--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA--T----------GT-TTTGGAA--AGTT-T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAAA----TTTCTATTATTCT-CTGGAGTTATATA--------GTGTAGTTAAGTCTTTTC-TGTTGA-TA---TGTCA-AGTTT-TCA---TTA------------T------GA------------AGTAATTACAGTGG-T-TTAA-GT------------------T-------TACACATGATG-A-TCC-AAC----------------A-AA---A-CATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACA--ATTA-----A--TAACATGTA--T-A-TG-G---ATT----TATGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--GAATAAAA--GCTC-TTAAAAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGC--A--------A--AA-AAA----GT--AAAA----AAAAAATAGAGCTCTAAAAAAAGAAAAGAAAAGAAG---AGAAAA----AAAAT-G--TTT-T---C-------------------C-----AT--------------------C-----ATT------------CT--------G------------TATGTTA----------------A----------------TGTATAAAAAATTGGTCTATGGATTTCTGGGACAACCCTC-AA---GAAT--TTGA---------TAAGGT--------TA-TGTC----A-TTA--AAAT---AC------TAAAT---------------------------------ATT--TT--CT---G-GAG---------------------------------CAATGTAATT-ATTTT--GT-A-A-------------ACCTCAA--------------AAGCTTAATTATTT----AAGTCA--TTTTGGTAAGTAT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------GCGTAATG---TCTTTT--TATTGAATAAAATATTGTACTTTCTG----TTA------------TTCTCTGGA------------G--------------T-CTAA-GTG------AAGTTT--C--T-------TTTCTGT--TG-A-TAT-ATT----------------A-AGTTTA--ATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATT--T----------A-CTAA--AAGCAAT----------ACT-ATGG----------------------------------CATGTGTACCAAC-------ATGTT----TTTTTTTTG--T-A-T---ATTTATTTTA--T-----GTAAAG-----ACA--ACTA-----A--TACC--GTGTCT-ACTT-G---ATT----TATGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA--GCTC-TTAAAAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGC--A--------A--AAGAAA----AT--GAGA----AAAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-A--TATGT---ATA-A-----AAAAA-A--GC-----ATG--T----------------------ATT-------CT-ATCT--------G------------TATGTTA----------------T----------------TGTA---------GTTCTATGGATTTCTGGGACAACCCTCTAAC--TAGCGTTCAA---------TGAAAT--------TG-TTTT----G-T----AAAT---AT------CAAAT--------TT----------TGTA---------ATCA-TT--TT---GGTAAGT--ATTTTAG-------TATA---TTTTATTTTGGTATAATTTATTTTAGGT-GGAT-A--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA--T----------GT-TTTGACA--ATTT-T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTAT----TTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTGA-TA---TGTTA-AGTTTCAGA---TTA------------T------GA------------AGT------------T-TTAA-GTA------AA---T--AACTCACCGGGTACCTATGATG-A-TCC--CA----------------A-AA---ATCATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAAT--AAGTA-GA-TAACTTAAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGT-------------ATGGAATCTGCATCAAC-------A---TGGGGTGTTTTTTG--A-A-AAAAAATTATGTTA--T-----G----A-----A-A--ATTA-----A--T-----GTC--T-ACTT-G---ATT----TACAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA--GCTC-TAAAAAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACC--ATTAAAAAAA--AAGAAG----ACTCAAAAT---AAAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-A--AA------A-A-A-----GAAAATA--GCCCA--ATG--T---------------TTTTGGTATTA------TTTATCT--------G------------TATGTTG----------------TTATGTTATTGTATATTTGTATAAAAGA--GTTTTGTAAACTTCTGGGATGATCCT--------------------------TGAAAT--------T--TTTG----A-T----AGATTATAT------CA-----------TT----------AG-A---------AATA-AT----------AAAT--GTTTT------------------CTCTTTCAATGAAATT-ATTTT--GT-A-AT-------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA--T----------AT-TTTAGTA--AATT-T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTAT----TTTCTGTTATTCT-CTGGAAT----TA--------GTGAATTT---TTTTTTC-TGTTGA-TA---TGTTA-AGTTCCTGA---TTA------------T------GAGGTAATTAGGGTGGT------------T-TTAA-GTT------A-------A--T-------TACCTATGATG-ATTCT-GC-----------------A-AA---A-CATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGT--TAGTA-GATTAA-T--AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGC-------------ATGGCATATGTAACACC-------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA--AAA--GGGCATAAAAAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATTAAAAGAGC--A--------T--NNNNNN----NN--NNNN----NNNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCA--TAT-C---A-T-A-----TAGTA-C--TT-----ATGGCC---------------TT-----ATTGGT----CT--TCTTGTTAAATA------------TATATTA----------------T----------------TGTATAAAAAT--GGTCTATAAATTTCTGGGACGACCCTC-AACT-TA----CTGA---------AAAAAA--------GAGTTTCAACTG-C----AACT---CC------CAAAA--------CC----------TA-A---------ATTA-TT--TT-----CAAAT--ATTT-----------------TTCTAT----ATATATTCTTTTTAAAGT-A-ATAA--C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A--T----------AC-TAGGGTA----TT-C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGTA---AA--------ATAAAGTT---TCCTTTCTTATTGA-TA---TGTAA-AGTTTCTGA---TTA------------T------GA------------GGT------------TATTAAGGTTTTATTAAA---TTAA--T-------TACCTATGAAG-G-TCC-GC-----------------A-AA---A-CATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAAT--TTGTA-GA-CAA-TT-AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC---------------ACGTTACATGTACCATCTTATGTTG---T----TTTTTTTTG--C-A-TCCAGA-TATTTTA--T-----G----AAGAGGACA--ATTA-----A--T-----A------ACTT-GGATACC----TGTAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA--AAA---------AAGAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TA----AAAGAGCATA--------A--AAGAGAAAACAT--AAAACTCTAAAAAATA----ATTGAAAGAACAGAAAAAAAGAAA---AAAAAA----AG----A--AAT-T---A-ACAGGCACAAAAA-ATTAC-----ATG--TTTGGTACTTATGGCCTT-----ATTGGGTGTCTT-GTCT--------G------------TATGTTA----------------C----------------TGT------AA--GGTCTAACAATTTCATGGACAACTCTC-AAAT-TA----TTAA---------TAAAATGAGACTTATG-TTTT----C-TCTTCCAAT---ATAATTCCCAAAA--------CC----------TA-A---------ATTA-TT--TTCAAG-CAATTTCATTATAGATCTAAATATATATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-AT-AATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCATTT----------ATATTTGGAA--AC---T--GGGTTAATCCAG------------TTAAATTG----ACTA-AAA------T--TTGTAA----TCTCTGTTATTCT-CTGGAGT-----------------AAATA---T-TTTTC-TGTTGA-TA---AGTAA-AGCTTCTGA---TTAAGAGGTAATTAGT------GT------------GGT------------T-TTAA-CTT------A-------A--T-------TACCTATGATGTG-TCT-GC-----------------A-AA---A-CATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAAT--TAGTA-GA-TAA-TT-AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATAT-------------ATTACATA--TAACATCTT-----G---T----TTTTTTGTG--C-A-TACAAA-TATTTTA--TGTAGAG----A-----ACA--ATTA-----A--T-----A------ACTTGG---A------TATGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : --A--------A--AAAAAA----AA--AAAA----AAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA-----------------A-A-----AAAGA-A--GCTCATAATT--T---------------TT-----GTTA------TTTATTT--------G------------TATGTTATTTTGTTATTGTATAAT----------------TGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC-GAAAGTA----TTGA---------TAACAT--------AA-TATC----A-T----AAA-------------AAAT-----------------------A---------AT---------------AAAT--ATT---G-------TCTA---TTTCATT-----GTAATT-ATTTT--GT-A------------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA--T----------AT-TTTCGTA--AATT-TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAGTGAAGTT---TCTTTTC-TGTTGA-TA---TAATA-AGTTTCTGA---TTA------------T------GA------------GGTAATTAGGGTGGTT-TTAA-GTT------AA---T-------------TGCCTATGATG-A-TCC--CAC---------------A-AA---A-CATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GATTAT-TTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAG-------------ATGGCAAATGTAA-ATC-----------T----TTTTTTAT---A-T-TAAAAGTCATATTA--T-----G----AAAAG-ACA--ATTAATAACA--T-----GTA--T-ATTT-G---ATC----TATAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 11111 2222222 22222222222 11111111 1111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222222 222222222222 333333333333 1111 1 222222222 11111 33333333333333 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 111 111 2222222222222 4444444444444 111111111 66666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 111111 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 33 11 66 4 11111 4 4 9999999 4 6 66 4 888 66 44444444444 1 77777777 5555 1 1 0 33 1 0 77 888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 777 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 4 5 4 66 1111111111 5 1 444444444444 2 333333333333 3 0000 0 333333333 88888 5 55555555555555 2222 1 4 4 777 4 0 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 4444444444444444444444 66 777 88 333 5 5 5 666 99 5 44 2 66 2 7777777777777 0 3 6666666666666 666666666 3 1 00000000000000000000000000000000000000000000000000 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 000000 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 3 1 555 888 5 11 3 0 7
lowQualScore : . .. .. .. . ..... . . ....... . . .. . ... .. ........... . ........ .... . . . .. . . .. ... ......................................................................................................................................................... . . ... . . ............................................................................................................................................................................................................................. . . . . .. .......... . . ............ . ............ . .... . ......... ..... . .............. .... . . . ... . . ... ................................................................................... . . ...................... .. ... .. ... . . . ... .. . .. . .. . ............. . . ............. ......... . . .................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . ...... . . ... ...... ...................... . ....... .... . . ....... . . ... ... . .. . . .
lowQualScore : 0 88 99 99 4 11111 4 4 4444444 4 7 11 4 111 99 22222222222 6 00000000 6666 6 6 8 22 6 2 99 888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 444 4 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 5 0 5 99 9999999999 0 2 000000000000 8 111111111111 4 6666 0 000000000 22222 0 00000000000000 1111 4 4 4 888 4 1 888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 4444444444444444444444 11 888 66 444 0 0 0 555 22 0 55 2 88 2 5555555555555 1 4 8888888888888 777777777 2 0 44444444444444444444444444444444444444444444444444 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 777777 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 2 4 111 888 7 99 3 7 5
consensus : AAAAAANAA--GAA--AAA--GCTC-TAAA-----AAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------A--AAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTTAG-------TA-----TTCTATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA--T----------AT-TTTGGTA--ANTT-T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTAN----TTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTGA-TA---TGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATGTAACATC--------T----TTTTTTTTG--A-A-TAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAANAA--GAA--AAA--GCTC-TAAA-----AAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------A--AAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----G-T----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TT--TT---G-CAAAT--ATTTTAG-------TATA---TTCTATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA--T----------AT-TTTGGTA--ANTT-T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTAN----TTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTGA-TA---TGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATGTAACATC-------GT----TTTTTTTTG--A-A-TAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAA--GAA--AAA--AATA-TATATTTTTAAAA-A-AAA-A----AAA-G---TAAA--AAA-
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgAAAAAAGAACAGAA--AAAATGCTC-TAAA-----GAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--AT-------ATTAAAAAA----AG--AAGA----AAAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGT-TACAA-A-A-----AAAAA-A--ACA----ATG--CCCAAGA---------TT-----CTTG------TT-ATTT--------ATCAGTATTGTATTATGTTA----------------C----------------TGTATAAAAAT--GGTCTATAAACTTCTGGGACGACCCT--------------------------TGAAAT--------TA-TT------GAT----AAA----GT--------AAT--------TT-----------------------ATTA-TTTATT---G-AAAAT---TATAAA-------TATT---TTCTCTTTCAATGTTA-TTATTTT--GT-A-AT-------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA--T----------AT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTAT----TTTCTGTTATTCTGTTTCAGC----TA--------ATGAGGT-----------------A-------GTTA-G------GA---T-----------------------------------GGT------------T-TTAA-GTT------A-------A--T-------TATTTATGATG-A-TCCAGCA------------------AAA--C---ATCACTTAATCACTTATTaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttaagttaattatttatgatgatccagcaaaacatcacttaatcacttattagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATGTAACATC---------------TTTTTTA--ATACTAAAAGTAATATTAAGT-----A----T-----ACAAT---TA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAAT------TGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCATAA--CAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttC-TGTTGA-TA---TGTTA-AGTTTTTGAGCATTAAG----------T------AATTAGGGT-----GGT------------T-TAAA-GTT------AA---T-------------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGTATG-------------GCATCTGTA------------------TTTATTTTGCAA-A-AAAAAATTATGTAA--A-----G----A-----A-AATGAATA-----ACTT-----GT---CAACTT-G---ATTTA----TGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAA-----AAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGC--A--------A--AGGAAA----ATG-GAAA----AAAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAA--TTT-T---A-A-A-----AACA------C-----TTG--T---------------TT------T--------CT-ATAT--------G------------AATGATAAT--------------T----------------TGTATATAAAA--GATCTATGGTTCTCTGGGACGACCCTCTAAT--TA----TTGACATTTTTTTTTAGAT--------TA-TGTC----A-T----TAAA---AT------AAAATATATATGCTTTCTCATTCAATG-AAAAAAAAAAATTATTT--TT---G-CAAGT--CAGTTGG-------TAAG------TATTTTGGTATAATTTATTTAAAATGG-AT-A--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA--T----------GT-TTTGGAA--AGTT-T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAAA----TTTCTATTATTCT-CTGGAGTTATATA--------GTGTAGTTAAGTCTTTTC-TGTTGA-TA---TGTCA-AGTTT-TCA---TTA------------T------GA------------AGTAATTACAGTGG-T-TTAA-GT------------------T-------TACACATGATG-A-TCCAACA------------------AAA--C---ATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACAAT---TA-----A--TAACATGTA--T-A-TG-G---ATTTA----TGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--GAATAAAA--GCTC-TTAA-----AAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGC--A--------A--AA-AAA----GT--AAAA----AAAAAATAGAGCTCTAAAAAAAGAAAAGAAAAGAAG---AGAAAA----AAAAT-G--TTT-T---C-------------------C-----AT--------------------C-----ATT------------CT--------G------------TATGTTA----------------A----------------TGTATAAAAAATTGGTCTATGGATTTCTGGGACAACCCTC-AA---GAAT--TTGA---------TAAGGT--------TA-T---------------------GT------CA------------T----------TA-A---------AATA-CT----------AAAT--ATTTT------------------CTGGAGCAATGTAATT-ATTTT--GT-A-A-------------ACCTCAA--------------AAGCTTAATTATTT----AAGTCA--TTTTGGTAAGTAT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------GCGTAATG---TCTTTT--TATTGAATAAAATATTGTACTTTCTG----TTA------------TTCTCTGGA------------G--------------T-CTAA-GTG------AAGTTT--C--T-------TTTCTGT--TG-A-TAT-ATT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGGC------------ATGTGTA-------------CC------AACATG-------TT----TTTTTTTTG--T-A-T---ATTTATTTTA--T-----GTAAAG-----ACAAC---TA-----A--TACC--GTGTCT-ACTT-G---ATTTA----TGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA--GCTC-TTAA-----AAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGC--A--------A--AAGAAA----AT--GAGA----AAAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-A--TATGT---ATA-A-----AAAAA-A--GC-----ATG--T----------------------ATT-------CT-ATCT--------G------------TATGTTA----------------T----------------TGTA---------GTTCTATGGATTTCTGGGACAACCCTCTAAC--TAGCGTTCAA---------TGAAAT--------TG-TTTT----G-T----AAAT---AT------CAAAT--------TT----------TGTA---------ATCA-TT--TT---GGTAAGT--ATTTTAG-------TATA---TTTTATTTTGGTATAATTTATTTTAGGT-GGAT-A--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA--T----------GT-TTTGACA--ATTT-T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTAT----TTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTGA-TA---TGTTA-AGTTTCAGA---TTA------------T------GA------------AGT------------T-TTAA-GTA------AA---T--AACTCACCGGGTACCTATGATG-A-TCC--CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGTATG-------------GAATCTGCATCAAC-------ATGGGGTGTTTTTTG--A-A-AAAAAATTATGTTA--T-----G----A-----A-AAT---TA-----A--T-----GTC--T-ACTT-G---ATTTA----CAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA--GCTC-TAAA-----AAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACC--ATTAAAAAAA--AAGAAG----ACTCAAAAT---AAAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-A--AA------A-A-A-----GAAAATA--GCCCA--ATG--T---------------TTTTGGTATTA------TTTATCT--------G------------TATGTTG----------------TTATGTTATTGTATATTTGTATAAAAGA--GTTTTGTAAACTTCTGGGATGATCCT--------------------------TGAAAT--------T--TTTG----A-T----AGATTATAT------CA-----------TT----------AG-A---------AATA-AT----------AAAT--GTTTT------------------CTCTTTCAATGAAATT-ATTTT--GT-A-AT-------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA--T----------AT-TTTAGTA--AATT-T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTAT----TTTCTGTTATTCT-CTGGAAT----TA--------GTGAATTT---TTTTTTC-TGTTGA-TA---TGTTA-AGTTCCTGA---TTA------------T------GAGGTAATTAGGGTGGT------------T-TTAA-GTT------A-------A--T-------TACCTATGATG-ATTCT-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGCATG-------------GCATATGTAACACC-------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAATAATTGAA--AAA--GCAC-AAAA-----AAGA-A-AAC-AT---AAA-GCTCTAAA--AAA-
gi|5 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctAAAAAATAA--TTA--AAA--GGGCATAAA-----AAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATTAAAAGAGC--A--------T--NNNNNN----NN--NNNN----NNNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCA--TAT-C---A-T-A-----TAGTA-C--TT-----ATGGCC---------------TT-----ATTGGT----CT--TCTTGTTAAATA------------TATATTA----------------T----------------TGTATAAAAAT--GGTCTATAAATTTCTGGGACGACCCTC-AACT-TA----CTGA---------AAAAAA--------GAGTTTCAACTG-C----AACT---CC------CAAAA--------CC----------TA-A---------ATTA-TT--TT-----CAAAT--ATTTT-----------------TCTAT----ATATATTCTTTTTAAAGT-A-ATAA--C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A--T----------AC-TAGGGTA----TT-C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGTA---AA--------ATAAAGTT---TCCTTTCTTATTGA-TA---TGTAA-AGTTTCTGA---TTA------------T------GA------------GGT------------TATTAAGGTTTTATTAAA---TTAA--T-------TACCTATGAAG-G-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC--ACG-------------TTACATGTACCATCTTATGTTGT----TTTTTTTTG--C-A-TCCAGA-TATTTTA--T-----G----AAGAGGACAAT---TA-----A--T-----A------ACTT-GGATACCTG----TAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TTataattaaaagggcataaaaaagaaaataaagctctaaaaaaataattaaaagagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacagagcacaaaacatatcatatcatatagtacttatggccttattggtcttcttgttaaatatatattattgtataaaaatggtctataaatttctgggacgaccctcaacttactgaaaaaaagagtttcaactgcaactcccaaaacctaaattattttcaaatatttttctatatatattctttttaaagtaataacagttttaccaaatcaagtaatttatttttggatactagggtattctacttaaattgattaaaatttgtattctgttattctctggagtaaaataaagtttcctttcttattgatatgtaaagtttctgattatgaggttattaaggttttattaaattaattacctatgaaggtccgcaaaacatcacataatcagttattttcattctattttaagaaattgacaatttgtagacaattaacaaacaattattgtatcgctatggtaatcagatggttacacgttacatgtaccatcttatgttgtttttttttgcatccagatattttatgaagaggacaattaataacttggatacctgtattctgttaccataacaatatctgcattatttagtttattattggtttttttttacatattaagttttc
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA--AAA---------AA-----GAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TA----AAAGAGCATA--------A--AAGAGAAAACAT--AAAACTCTAAAAAATA----ATTGAAAGAACAGAAAAAAAGAAA---AAAAAA----AG----A--AAT-T---A-ACAGGCACAAAAA-ATTAC-----ATG--TTTGGTACTTATGGCCTT-----ATTGGGTGTCTT-GTCT--------G------------TATGTTA----------------C----------------TGT------AA--GGTCTAACAATTTCATGGACAACTCTC-AAAT-TA----TTAA---------TAAAATGAGACTTATG-TTTT----C-TCTTCCAAT---ATAATTCCCAAAA--------CC----------TA-A---------ATTA-TT--TTCAAG-CAATTTCATTATAGATCTAAATATATATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-AT-AATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCATTT----------ATATTTGGAA--AC---T--GGGTTAATCCAG------------TTAAATTG----ACTA-AAA------T--TTGTAA----TCTCTGTTATTCT-CTGGAGT-----------------AAATA---T-TTTTC-TGTTGA-TA---AGTAA-AGCTTCTGA---TTAAGAGGTAATTAGT------GT------------GGT------------T-TTAA-CTT------A-------A--T-------TACCTATGATGTG-TCT-GCA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATATATT-------------ACATA--TAACATCTT-----GT----TTTTTTGTG--C-A-TACAAA-TATTTTA--TGTAGAG----A-----ACAAT---TA-----A--T-----A------ACTTGG---A--TA----TGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : --A--------A--AAAAAA----AA--AAAA----AAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA-----------------A-A-----AAAGA-A--GCTCATAATT--T---------------TT-----GTTA------TTTATTT--------G------------TATGTTATTTTGTTATTGTATAAT----------------TGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC-GAAAGTA----TTGA---------TAACAT--------AA-TATC----A-T----AAA-------------AAAT-----------------------A---------AT---------------AAAT--ATT---G-------T--------CTATTTCATTGTAATT-ATTTT--GT-A------------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA--T----------AT-TTTCGTA--AATT-TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAGTGAAGTT---TCTTTTC-TGTTGA-TA---TAATA-AGTTTCTGA---TTA------------T------GA------------GGTAATTAGGGTGGTT-TTAA-GTT------AA---T-------------TGCCTATGATG-A-TCCCACA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAGATG-------------GCAAATGTAA-ATC--------T----TTTTTTAT---A-T-TAAAAGTCATATTA--T-----G----AAAAG-ACAAT---TAATAACA--T-----GTA--T-ATTT-G---ATCTA----TAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 3333333 22222222222 11111111 1111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222222 222222222222 333333333333 1111 1 222222222 11111 33333333333333 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 111 111 222222222222222 22222222222 1111 66666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 55 33 77 0 5 0 5 5 3333333 5 2 66 55 888 66 44444444444 1 77777777 5555 1 1 0 33 1 0 77 888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 777 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 4 5 4 66 1111111111 5 1 444444444444 2 333333333333 3 0000 0 333333333 88888 5 55555555555555 2222 1 4 4 777 4 0 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 4444444444444444444444 66 777 88 333 5 5 5 666 99 5 44 2 66 888888888888888 0 888 0 88888888888 5 77 3333 22 3 1 00000000000000000000000000000000000000000000000000 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 6 33 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 1 555 888 5 11 3 0 7
lowQualScore : . .. .. .. . . . . . ....... . . .. .. ... .. ........... . ........ .... . . . .. . . .. ... ......................................................................................................................................................... . . ... . . ........................................................................................................................................................................................................................... . . . . .. .......... . . ............ . ............ . .... . ......... ..... . .............. .... . . . ... . . ... ................................................................................... . . ...................... .. ... .. ... . . . ... .. . .. . .. ............... . ... . ........... . .. .... .. . . .................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . . .. . . ... ...... ...................... . ....... .... . . ....... . ... ... . .. . . .
lowQualScore : 0 77 66 99 2 0 5 0 0 5555555 0 5 99 11 111 99 22222222222 6 00000000 6666 6 6 8 22 6 2 99 888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 2 444 4 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 5 0 5 99 9999999999 0 2 000000000000 8 111111111111 4 6666 0 000000000 22222 0 00000000000000 1111 4 4 4 888 4 1 888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 4444444444444444444444 11 888 66 444 0 0 0 555 22 0 55 2 88 666666666666666 1 888 1 22222222222 7 99 7777 77 2 0 44444444444444444444444444444444444444444444444444 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 6 66 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 4 111 888 7 99 3 7 5
consensus : AAAAAATAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------A--AAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-GAN--TA----TTGA---------TAAAAT--------TA-TTTC----GT----AAAT---AT------CAAA---------TT----------TG-A---------ATTA-TTTT---G-CAAAT--ATTTT-G---TA---------T--TCTATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA--T----------AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTG-AT---ATGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATT----TATGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAANAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--A--------A--AAGAAA----AT--AAAA----AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-A-A-----AAAAA-A--GC-----ATG--T---------------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC-AA---TA----TTGA---------TGAAAT--------TA-TTTC----GT----AAAT---AT------CAAAT--------TT----------TG-A---------ATTA-TTTT---G-CAAAT--ATTTTAG---TA---------T--TCTATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA--T----------AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTG-AT---ATGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATT----TATGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA--AAAATGCTC-TAAAGAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGC--AT-------ATTAAAAAA----AG--AAGA----AAAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGT-TACAA-A-A-----AAAAA-A--ACA----ATG--CCCAAGA---------TT-----CTTG------TT-ATTT--------ATCAGTATTGTATTATGTTA----------------C----------------TGTATAAAAAT--GGTCTATAAACTTCTGGGACGACCCTT-GAAATTA----TTGA---------TAAAGT--------AA-TTTA----TT----ATTT---AT------TGAA------------------------A---------ATTA-T---------AAAT--ATT------------------T--TCTCTTTCAATGTTA-TTATTTT--GT-A-AT-------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA--T----------AT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------ATGAGGT------------------A------GTTA-G------GA---T-----------------------------------GGT------------T-TTAA-GTT------A-------A--T-------TATTTATGATG-A-TCCAGCA------------------AAA--C---ATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATG---TAACAT--C--------TT-TTTTAA--T---ACTAAAAGTAATATTAAGT-----A----T-----ACAAT---TA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAA------TTGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCAT--AACAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttC-TGTTG-AT---ATGTTA-AGTTTTTGAGCATTAAG----------T------AATTAGGGT-----GGT------------T-TAAA-GTT------AA---T-------------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGT-------------ATGGCATCTG---TA----------------T-TTATTT--TGCAAAAAAAAATTATGTAA--A-----G----A-----A-AATGAATA-----ACTT-----GT---CAACTT-G---ATT----TATGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGC--A--------A--AGGAAA----ATG-GAAA----AAAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAA--TTT-T---A-A-A-----AACA------C-----TTG--T---------------TT------T--------CT-ATAT--------G------------AATGATAAT--------------T----------------TGTATATAAAA--GATCTATGGTTCTCTGGGACGACCCTCTAAT--TA----TTGACATTTTTTTTTAGAT--------TA-TGTC----AT----TAAA---AT------AAAATATATATGCTTTCTCATTCAATG-AAAAAAAAAAATTATTTTT---G-CAAGT--CAGTTGG---TA------------AGTATTTTGGTATAATTTATTTAAAATGG-AT-A--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA--T----------GT-TTTGGAA-AGTT--T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------GTGTAGTTAAGTCTTTTC-TGTTG-AT---ATGTCA-AGTTT-TCA---TTA------------T------GA------------AGTAATTACAGTGG-T-TTAA-GT------------------T-------TACACATGATG-A-TCCAACA------------------AAA--C---ATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACAAT---TA-----A--TAACATGTA--T-A-TG-G---ATT----TATGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--GAATAAAA--GCTC-TTAAAAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGC--A--------A--AA-AAA----GT--AAAA----AAAAAATAGAGCTCTAAAAAAAGAAAAGAAAAGAAG---AGAAAA----AAAAT-G--TTT-T---C-------------------C-----AT--------------------C-----ATT------------CT--------G------------TATGTTA----------------A----------------TGTATAAAAAATTGGTCTATGGATTTCTGGGACAACCCTC-AA---GAAT--TTGA---------TAAGGT--------TA-T--------------------GT------CA------------T----------TA-A---------AATA-CT--------AAAT--ATTTT--------------------CTGGAGCAATGTAATT-ATTTT--GT-A-A-------------ACCTCAA--------------AAGCTTAATTATTT----AAGTCA--TTTTGGTAAGTAT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------GCGTAATG---TCTTTT--TATTGAATAAAATATTGTACTTTCTG----TTA------------TTCTCTGGA------------G--------------T-CTAA-GTG------AAGTTT--C--T-------TTTCTGT--TG-A-TAT-ATT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGGC------------ATGT-------------GTACC---------AACATG-T--------TT-TTTTTT--TG--TAT---ATTTATTTTA--T-----GTAAAG-----ACAAC---TA-----A--TACC--GTGTCT-ACTT-G---ATT----TATGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA--GCTC-TTAAAAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGC--A--------A--AAGAAA----AT--GAGA----AAAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-A--TATGT---ATA-A-----AAAAA-A--GC-----ATG--T----------------------ATT-------CT-ATCT--------G------------TATGTTA----------------T----------------TGTA---------GTTCTATGGATTTCTGGGACAACCCTCTAAC--TAGCGTTCAA---------TGAAAT--------TG-TTTT----GT----AAAT---AT------CAAAT--------TT----------TGTA---------ATCA-TTTT---GGTAAGT--ATTTTAG---TA---------TATTTTATTTTGGTATAATTTATTTTAGGT-GGAT-A--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA--T----------GT-TTTGACA-ATTT--T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTG-AT---ATGTTA-AGTTTCAGA---TTA------------T------GA------------AGT------------T-TTAA-GTA------AA---T--AACTCACCGGGTACCTATGATG-A-TCC--CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGT-------------ATGGAATCTGCATCAACATGGG--------GT-GTTTTT--TG--AAAAAAAATTATGTTA--T-----G----A-----A-AAT---TA-----A--T-----GTC--T-ACTT-G---ATT----TACAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA--GCTC-TAAAAAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACC--ATTAAAAAAA--AAGAAG----ACTCAAAAT---AAAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-A--AA------A-A-A-----GAAAATA--GCCCA--ATG--T---------------TTTTGGTATTA------TTTATCT--------G------------TATGTTG----------------TTATGTTATTGTATATTTGTATAAAAGA--GTTTTGTAAACTTCTGGGATGATCCT--------------------------TGAAAT--------T--TTTG----AT----AGATTATAT------CA-----------TT----------AG-A---------AATA-AT--------AAAT--GTTTT--------------------CTCTTTCAATGAAATT-ATTTT--GT-A-AT-------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA--T----------AT-TTTAGTA-AATT--T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------GTGAATTT---TTTTTTC-TGTTG-AT---ATGTTA-AGTTCCTGA---TTA------------T------GAGGTAATTAGGGTGGT------------T-TTAA-GTT------A-------A--T-------TACCTATGATG-ATTCT-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGC-------------ATGGCATATG---TAACAC--C--------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAATAATTGAA--AAA--GCAC-AAAAAAGA-A-AAC-AT---AAA-GCTCTAAA--AAA-
gi|5 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctAAAAAATAA--TTA--AAA--GGGCATAAAAAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATTAAAAGAGC--A--------T--NNNNNN----NN--NNNN----NNNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCA--TAT-C---A-T-A-----TAGTA-C--TT-----ATGGCC---------------TT-----ATTGGT----CT--TCTTGTTAAATA------------TATATTA----------------T----------------TGTATAAAAAT--GGTCTATAAATTTCTGGGACGACCCTC-AACT-TA----CTGA---------AAAAAA--------GAGTTTCAACTGC----AACT---CC------CAAAA--------CC----------TA-A---------ATTA-TTTT-----CAAAT--ATTT-----------------T--TCTAT----ATATATTCTTTTTAAAGT-A-ATAA--C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A--T----------AC-TAGGGTA---TT--C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGTA---AA--------ATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA------------T------GA------------GGT------------TATTAAGGTTTTATTAAA---TTAA--T-------TACCTATGAAG-G-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC---------------ACGTTACATG---TACCAT--CTTATGTTGTT-TTTTTT--TG--CATCCAGA-TATTTTA--T-----G----AAGAGGACAAT---TA-----A--T-----A------ACTT-GGATACC----TGTAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TTataattaaaagggcataaaaaagaaaataaagctctaaaaaaataattaaaagagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacagagcacaaaacatatcatatcatatagtacttatggccttattggtcttcttgttaaatatatattattgtataaaaatggtctataaatttctgggacgaccctcaacttactgaaaaaaagagtttcaactgcaactcccaaaacctaaattattttcaaatatttttctatatatattctttttaaagtaataacagttttaccaaatcaagtaatttatttttggatactagggtattctacttaaattgattaaaatttgtattctgttattctctggagtaaaataaagtttcctttcttattgatatgtaaagtttctgattatgaggttattaaggttttattaaattaattacctatgaaggtccgcaaaacatcacataatcagttattttcattctattttaagaaattgacaatttgtagacaattaacaaacaattattgtatcgctatggtaatcagatggttacacgttacatgtaccatcttatgttgtttttttttgcatccagatattttatgaagaggacaattaataacttggatacctgtattctgttaccataacaatatctgcattatttagtttattattggtttttttttacatattaagttttc
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA--AAA---------AAGAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TA----AAAGAGCATA--------A--AAGAGAAAACAT--AAAACTCTAAAAAATA----ATTGAAAGAACAGAAAAAAAGAAA---AAAAAA----AG----A--AAT-T---A-ACAGGCACAAAAA-ATTAC-----ATG--TTTGGTACTTATGGCCTT-----ATTGGGTGTCTT-GTCT--------G------------TATGTTA----------------C----------------TGT------AA--GGTCTAACAATTTCATGGACAACTCTC-AAAT-TA----TTAA---------TAAAATGAGACTTATG-TTTT----CTCTTCCAAT---ATAATTCCCAAAA--------CC----------TA-A---------ATTA-TTTTCAAG-CAATTTCATTATAGATCTAAATATATATT--TTTATTTCT-TGTTATTT-TTCAAAGA-A-AT-AATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCATTT----------ATATTTGGAA-AC----T--GGGTTAATCCAG------------TTAAATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT-----------------AAATA---T-TTTTC-TGTTG-AT---AAGTAA-AGCTTCTGA---TTAAGAGGTAATTAGT------GT------------GGT------------T-TTAA-CTT------A-------A--T-------TACCTATGATGTG-TCT-GCA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATAT-------------ATTACATA-----TAACAT--C--------TTGTTTTTTTGTG--CATACAAA-TATTTTA--TGTAGAG----A-----ACAAT---TA-----A--T-----A------ACTTGG---A------TATGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : --A--------A--AAAAAA----AA--AAAA----AAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA-----------------A-A-----AAAGA-A--GCTCATAATT--T---------------TT-----GTTA------TTTATTT--------G------------TATGTTATTTTGTTATTGTATAAT----------------TGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC-GAAAGTA----TTGA---------TAACAT--------AA-TATC----AT----AAA-------------AAAT-----------------------A---------AT-------------AAAT--ATT---G---T--------------CTATTTCATTGTAATT-ATTTT--GT-A------------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA--T----------AT-TTTCGTA-AATT--TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAGTGAAGTT---TCTTTTC-TGTTG-AT---ATAATA-AGTTTCTGA---TTA------------T------GA------------GGTAATTAGGGTGGTT-TTAA-GTT------AA---T-------------TGCCTATGATG-A-TCCCACA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAG-------------ATGGCAAATG---TAA-AT--C--------TT-TTTTTA--T---ATTAAAAGTCATATTA--T-----G----AAAAG-ACAAT---TAATAACA--T-----GTA--T-ATTT-G---ATC----TATAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 1111 2222222 22222222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3333333333333333 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4444444444444444444444444444444444444444444 1111 1 222222222 11111 3333333333333333 1111 0000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 111 111 2222222222222 22222222222 1111 66666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 111111 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 0 000 11 7777 2 4 4 4 7777777 4 2 66 55 3 66666666666 7 555 5 7 0 666 1 77 3 888 0000 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 0 777 1 1 9999999999999999 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 4 5 4 88888 1 5555555555555555555555555555555555555555555 333 3 0000 0 333333333 88888 5 2222222222222222 2222 1 4 4 777 4 0 777 0000000000000000000000000000000000000000000000000000000000000000000000 4 4 4444444444444444444444 66 777 88 333 5 5 5 666 99 5 44 2 66 2 7777777777777 0 888 0 88888888888 5 77 3333 22 3 1 00000000000000000000000000000000000000000000000000 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 000000 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 3 1 555 888 5 11 3 0 7
lowQualScore : . ... .. .... . . . . ....... . . .. .. . ........... . ... . . . ... . .. . ... .... . ............................................................................................................................... . . ... . . ................ ......................................................................................................................................................................................................... . . . . ..... . ........................................... ... . .... . ......... ..... . ................ .... . . . ... . . ... ...................................................................... . . ...................... .. ... .. ... . . . ... .. . .. . .. . ............. . ... . ........... . .. .... .. . . .................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . ...... . . ... ...... ...................... . ....... .... . . ....... . . ... ... . .. . . .
lowQualScore : 2 222 99 5555 1 4 4 4 7777777 4 5 99 11 9 11111111111 9 222 0 8 8 111 6 99 0 888 6666 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 2 444 4 1 5555555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 5 0 5 66666 2 0000000000000000000000000000000000000000000 000 1 6666 0 000000000 22222 0 1111111111111111 1111 4 4 4 888 4 1 888 7777777777777777777777777777777777777777777777777777777777777777777777 4 4 4444444444444444444444 11 888 66 444 0 0 0 555 22 0 55 2 88 2 5555555555555 1 888 1 22222222222 7 99 7777 77 2 0 44444444444444444444444444444444444444444444444444 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 777777 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 2 4 111 888 7 99 3 7 5
consensus : AAAAAATAA--GAA--AAA----GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA--------A--AAGAAAAN--AAAA-AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TNT-T---A-AAAAAAA-AGC-----ATG--C------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC--G--AN--T-A----TTGATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCAT--AT-TTTGGTAA--NTTT--TGGT-T------------GATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAATAA--GAA--AAA----GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA--------A--AAGAAAAT--AAAA-AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-A--TAT-T---A-AAAAAAA-AGC-----ATG--T------TT-----ATTG------CT-ATCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC--G--AN--T-A----TTGATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCAT--AT-TTTGGTAA--NTTT--TNGT-T------------GATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA--AAAAT--GCTC-TAAAGAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGCAT-------ATTAAAAAAAG--AAGA-AAAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGT-TACAA-AAAAAAA-AACA----ATG--CCCAAGATT-----CTTG------TT-ATTT--------ATCAGTATTGTATTATGTTA----------------C----------------TGTATAAAAAT--GGTCTATAAACTTCTGGGACGACCCTT--GAAAT--T-A----TTGATA---------AAGT------AA-T--------TTA----TT--A-TTTA--------------TT---GAA----------AA---------TTA-T---------AA-------AT-A--TT-------------TTCT-CTTTCAATGTTA-TTATTTT--GT-A-AT------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCAT--AT-TTTGAC-------------T-T------------GATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------A-TGAGGT------------------A------GTTA-G------GA---T-------------------------GGT------------T-TTAAG------TTA-----A--T-------TATTTATGATG-A-TCCAGCA------------------AAA--C---ATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATG---TAACAT--C--------TT-TTTTAA--T---ACTAAAAGTAATATTAAGT-----A----T-----ACAAT---TA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAAT------TGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCATAA--CAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttCT-GTTG-AT---ATGTTA-AGTTTTTGAGCATTAAGT------AATTAGGGT-----GGT------------T-TAAAG------TTAA---T-----------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGTATG-------------GCATCTG---TA----------------T-TTATTT--TGCAAAAAAAAATTATGTAA--A-----G----A-----A-AATGAATA-----ACTT-----GT---CAACTT-G---ATTTA----TGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGCA--------A--AGGAAAATG-GAAA-AAAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAA--TTT-T---A-AAAACA----C-----TTG--T------TT------T--------CT-ATAT--------G------------AATGATAAT--------------T----------------TGTATATAAAA--GATCTATGGTTCTCTGGGACGACCCTCT-A--AT--T-A----TTGACATTTTTTTTTAGAT------TA-T--------GTC----ATTAA-AATAAAATATATATGCTTTC---TCA-TTCAAT-G-AAAAAAAAAAATTATTTTT---G-CAA-------GTCA--GTT-----GG---TA-AGT-ATTTTGGTATAATTTATTTAAAATGG-ATA--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCAT--GT-TTTGGAAA--GTTT--TTGT-G------------GATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------G-TGTAGTTAAGTCTTTTCT-GTTG-AT---ATGTCA-AGTTT-TCA---TTA--T------GA------------AGTAATTACAGTGG-T-TTAAG------T----------T-------TACACATGATG-A-TCCAACA------------------AAA--C---ATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACAAT---TA-----A--TAACATGTA--T-A-TG-G---ATTTA----TGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--AAA--AAAAAGAGCAC-AAAAAAGA-G-AAG-A----AAA-G
gi|2 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgAAAGAATAA--GAATAAAA----GCTC-TTAAAAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGCA--------A--AA-AAAGT--AAAA-AAAAAATAGAGCTCTAAAAAAAGAAAAGAAAAGAAG---AGAAAA----AAAAT-G--TTT-T---C-----------C-----AT-----------C-----ATT------------CT--------G------------TATGTTA----------------A----------------TGTATAAAAAATTGGTCTATGGATTTCTGGGACAACCCTCAAG--AA--T------TTGATA---------AGGT------TA-T------------------------G--------------TC---A----T---T-A-AA---------ATA-CT--------AA-------AT-A--TTT-----T--------CT-GGAGCAATGTAATT-ATTTT--GT-A-A------------ACCTCAA--------------AAGCTTAATTATTT----AAGTCAT-----TTTGGTAAGTATTT--TGGTATAATTTATTTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------G-CGTAATG---TCTTTT-T-ATTGAATAAAATATTGTACTTTCTG----TTA--TTCTCTGGA------------G--------------T-CTAAG------TGAAGTTTC--T-------TTTCTGT--TG-A-TAT-ATT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGGC------------ATGTGTA-------------CC---------AACATG-T--------TT-TTTTTT--TG--TAT---ATTTATTTTA--T-----GTAAAG-----ACAAC---TA-----A--TACC--GTGTCT-ACTT-G---ATTTA----TGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAGaatgaaagaataagaataaaagctcttaaaaaaaaagaaaaagctctaaaagtaaaaagagcaaaaaaagtaaaaaaaaaatagagctctaaaaaaagaaaagaaaagaagagaaaaaaaatgttttccatcattctgtatgttaatgtataaaaaattggtctatggatttctgggacaaccctcaagaatttgataaggttatgtcattaaaatactaaatattttctggagcaatgtaattattttgtaaacctcaaaagcttaattatttaagtcattttggtaagtattttggtataatttatttgtggatactgctaattcttttttgtaataccaaaaggctttttttgtaagccgtatttggcattttttgttgatactgcgtaatgtctttttattgaataaaatattgtactttctgttattctctggagtctaagtgaagtttcttttctgttgatatattaagtttaattatggagtcagttatcttcattccagtttaagatgtcaacatttactaaaagcaatactatggcatgtgtaccaacatgttttttttttgtatatttattttatgtaaagacaactaataccgtgtctacttgatttatgttaccatagttaccatgagaatatctgaacttttagtttcataaacgtttcattaattgtgattgtgttaacatatacattttctataaaagtgttattaaatttttcataaattaatcataaaaaaaatcaaaatattttattctaaactttttaaacctacaacaataatgtgttttgccttaaagtctttgtttcctttcatatttgtgtctctaacaacaacttccatcggggatcccgcagacagtcagaaacagaactccctgacatttcctggactaagt
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA----GCTC-TTAAAAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGCA--------A--AAGAAAAT--GAGA-AAAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-A--TATGT---ATAAAAAAA-AGC-----ATG--T-------------ATT-------CT-ATCT--------G------------TATGTTA----------------T----------------TGTA---------GTTCTATGGATTTCTGGGACAACCCTCT-A--AC--T-AGCGTTCAATG---------AAAT------TG-T--------TTT----GT--A-AATA--------------TC---AAA-TT---TTGTAA---------TCA-TTTT---GGTAA-------GT-A--TTT-----TAGTATATTTT-ATTTTGGTATAATTTATTTTAGGT-GGATA--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAAT--GT-TTTGACAA--TTTT--TGGT-T------------GATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCAGA---TTA--T------GA------------AGT------------T-TTAAG------TAAA---TAACTCACCGGGTACCTATGATG-A-TCC--CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGTATG-------------GAATCTGCATCAACATGGG--------GT-GTTTTT--TG--AAAAAAAATTATGTTA--T-----G----A-----A-AAT---TA-----A--T-----GTC--T-ACTT-G---ATTTA----CAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA----GCTC-TAAAAAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACCATTAAAAAAA--AAGAAGACTCAAAATAAAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-A--AA------A-AAGAAAATAGCCCA--ATG--T------TTTTGGTATTA------TTTATCT--------G------------TATGTTG----------------TTATGTTATTGTATATTTGTATAAAAGA--GTTTTGTAAACTTCTGGGATGATCCTT--G--AAATT-T----TTGATA---------GA--------------------TT------------ATA--------------TC---A---TT---A-G-AA---------ATA-AT--------AA-------AT-G--TTT-----T--------CT-CTTTCAATGAAATT-ATTTT--GT-A-AT------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCAT--AT-TTTAGTAA--ATTT----GT-T------------TGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------G-TGAATTT---TTTTTTCT-GTTG-AT---ATGTTA-AGTTCCTGA---TTA--T------GAGGTAATTAGGGTGGT------------T-TTAAG------TTA-----A--T-------TACCTATGATG-ATTCT-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGCATG-------------GCATATG---TAACAC--C--------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA--AAA----GGGCATAAAAAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATTAAAAGAGCA--------T--NNNNNNNN--NNNN-NNNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCA--TAT-C---A-TATAGTA-CTT-----ATGGCC------TT-----ATTGGT----CT--TCTTGTTAAATA------------TATATTA----------------T----------------TGTATAAAAAT--GGTCTATAAATTTCTGGGACGACCCTC--A--AC--TTA----CTGAAA---------AAAA------GAGT--------TTCAACTGC--A-ACTC--------------CC---AAAACC---T-A-AA---------TTA-TTTT-----CAA-------AT-A--TTT-----T-------TCT-AT----ATATATTCTTTTTAAAGT-A-ATAA-C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---AT--AC-TAGGGTA----TTC--TACT-T------------AA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGT----AA--------AATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA--T------GA------------GGT------------TATTAAGGTTTTATTAAAT-TAA-T-------TACCTATGAAG-G-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC--ACG-------------TTACATG---TACCAT--CTTATGTTGTT-TTTTTT--TG--CATCCAGA-TATTTTA--T-----G----AAGAGGACAAT---TA-----A--T-----A------ACTT-GGATACCTG----TAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA--AAA-----------AAGAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TAAagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|7 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaAAAAAATAA----A--AGA----GCAT-AAAAGAGA-A-AAC-AT---AAA-ACTCTAAA--AAA-TAATTGAAAGAACA--------G--AA---------AAA-AAGAAA---------AAAAAAAGAAATTAACAGGCA---CAAAAA----ATTAC-A--TGT-T---T-GGTA------CTT---ATGGCC------TT-----ATTGGGTGTCTT-GTCT--------G------------TATGTTA----------------C----------------TGTA------A--GGTCTAACAATTTCATGGACAACTCTC--A--AA--TTA----TTAATA---------AAATGAGACTTA-TGTTTTCTCTTCCA--AT--ATAAT---------------TCCCAAAA-CC---T-A-AA---------TTA-TTTTCAAG-CAATTTCATTAT-AGATCTAAATATA---TATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-ATAATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCATTTATATTTGGAAA--CTG----GGT-T------------AATCCAG---------TTAA---ATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT------------------AAATA---T-TTTTCT-GTTG-AT---AAGTAA-AGCTTCTGA---TTA--A------GA------------GGTAATTAGTGTGGTT-TTAAC------TTAA---T-----------TACCTATGATGTG-TCT-GCA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATATATT-------------ACATA-----TAACAT--C--------TTGTTTTTTTGTG--CATACAAA-TATTTTA--TGTAGAG----A-----ACAAT---TA-----A--T-----A------ACTTGG---A--TA----TGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTaagagcataaaagagaaaacataaaactctaaaaaataattgaaagaacagaaaaaaagaaaaaaaaaagaaattaacaggcacaaaaaattacatgtttggtacttatggccttattgggtgtcttgtctgtatgttactgtaaggtctaacaatttcatggacaactctcaaattattaataaaatgagacttatgttttctcttccaatataattcccaaaacctaaattattttcaagcaatttcattatagatctaaatatatatttttatttcttgttatttttcaaagaaataatcagttttacccaatcaactttttatcaagtcatttatatttggaaactgggttaatccagttaaattgactaaaatttgtaatctctgttattctctggagtaaatatttttctgttgataagtaaagcttctgattaagaggtaattagtgtggttttaacttaattacctatgatgtgtctgcaaaacatcacatcatcagttattttcattccagtttaagaaattcacaattagtagataattaacaaacaattattgtgttgctatggtgatcagatagttatatattacatataacatcttgtttttttgtgcatacaaatattttatgtagagaacaattaataacttggatatgtgtattatgttgccataagtatatcagacctgctttttttagtttaatgaatgtttcattagttataattgcttttttacatataagattttcatt
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaaaaaaagaagaaaaaaagaaaaaagaaaggtctT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : A--------A--AAAAAAAA--AAAA-AAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA-----------------AAAAAGA-AGCTCATAATT--T------TT-----GTTA------TTTATTT--------G------------TATGTTATTTTGTTATTGTATAAT----------------TGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC--G--AAAGT-A----TTGATA---------ACAT------AA-T--------ATC----AT--A-AA---------------------AAA-T--------AA---------T-------------AA-------AT-A--TT-------G---T---CT-ATTTCATTGTAATT-ATTTT--GT-A-----------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCAT--AT-TTTCGTAA--ATTTATTTGT-G------------GATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAG-TGAAGTT---TCTTTTCT-GTTG-AT---ATAATA-AGTTTCTGA---TTA--T------GA------------GGTAATTAGGGTGGTT-TTAAG------TTAA---T-----------TGCCTATGATG-A-TCCCACA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAGATG-------------GCAAATG---TAA-AT--C--------TT-TTTTTA--T---ATTAAAAGTCATATTA--T-----G----AAAAG-ACAAT---TAATAACA--T-----GTA--T-ATTT-G---ATCTA----TAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 22222222222222 2222222 222222 1111111 11111111 111 1111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333333333333333 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222 222222222222 333333333 1111 1 222222222 11111 33333333333333 1111 0000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 111 111 2222222222222 22222222222 1111 66666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 111111 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 333 5 33333333333333 9999 4 4 7777777 8 66 5 111111 2 5555555 88888888 777 0 0 666 0000 44 5 77 3 888 0000 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 0 777 1 1 99999999999999999 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 4 5 4 1111111111 66 5 1 777777777777 2 000000000 333 3 0000 0 333333333 88888 5 55555555555555 2222 1 4 4 777 4 0 777 0000000000000000000000000000000000000000000000000000000000000000000000000 4 4 4444444444444444444444 66 777 88 333 5 5 5 666 99 5 44 2 66 2 7777777777777 0 888 0 88888888888 5 77 3333 22 3 1 00000000000000000000000000000000000000000000000000 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 000000 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 3 1 555 888 5 11 3 0 7
lowQualScore : . ... . .............. .... . . ....... . .. . ...... . ....... ........ ... . . ... .... .. . .. . ... .... ................................................................................................................................................. . . ... . . ................. ......................................................................................................................................................................................................... . . . . .......... .. . . ............ . ......... ... . .... . ......... ..... . .............. .... . . . ... . . ... ......................................................................... . . ...................... .. ... .. ... . . . ... .. . .. . .. . ............. . ... . ........... . .. .... .. . . .................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . ...... . . ... ...... ...................... . ....... .... . . ....... . . ... ... . .. . . .
lowQualScore : 6 111 0 44444444444444 4444 4 4 7777777 8 99 0 888888 5 6666666 11111111 666 5 8 111 6666 99 0 99 0 888 6666 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 444 4 1 55555555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 5 0 5 9999999999 99 0 2 111111111111 8 666666666 000 1 6666 0 000000000 22222 0 00000000000000 1111 4 4 4 888 4 1 888 7777777777777777777777777777777777777777777777777777777777777777777777777 4 4 4444444444444444444444 11 888 66 444 0 0 0 555 22 0 55 2 88 2 5555555555555 1 888 1 22222222222 7 99 7777 77 2 0 44444444444444444444444444444444444444444444444444 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 777777 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 2 4 111 888 7 99 3 7 5
consensus : AAAAAATAA--GAA-AAA--GCTC-T------AAAA----AAA-A-AAG-A----AAAGCTCTAAA--AAA-TAATTGAAAGAGCA---A--AAAAAAA-GA----AGA--------AAAAAAT--AGAGCACGAA----AAAAAGAA-AANAAAAGAAA---AAAAAA----AATAT-ATNT-T----A-AAA-------------------AAAA-AGC---ATG--C------TT-----N-TTG------TT-A-TCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC--G--A-N--T-A----TTGATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAATT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAATAA--GAA-AAA--GCTC-T------AAAA----AAA-A-AAG-A----AAAGCTCTAAA--AAA-TAATTGAAAGAGCA---A--AAGAAAA-NA----AAA--------AAAAAAT--AGAGCACGAA----AAAAAGAA-AANAAAAGAAA---AAAAAA----AATAT-ATNT-T----A-AAA-------------------AAAA-AGC---ATG--C------TT-----A-TTG------CT-A-TCT--------G------------TATGTTA----------------T----------------TGTATAAAAAA--GGTCTATGAATTTCTGGGACGACCCTC--G--A-N--T-A----TTGATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAATT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-AT-A--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TGGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAA-GTT------AA---T--A--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA-AAAATGCTC-T------AAAG----AAA-A-AAGTAT---AAAGCTCTAAA--AAA-TAATTGAAAGAGCAT--ATTAAAAAAA-GA----AGA--------AAAAAA---AGA--AAGAA----ATATAGAG-CAC----GAAA---AAAAAG----TATAT-ATCTGTTACAA-AAA-------------------AAAA-AACA--ATG--CCCAAGATT-----C-TTG------TT-A-TTT--------ATCAGTATTGTATTATGTTA----------------C----------------TGTATAAAAAT--GGTCTATAAACTTCTGGGACGACCCTT--GAAA-T--T-A----TTGATA---------AAGT------AA-T--------TTA----TT--A-TTTA--------------TT---GAA---------AA---------TTA-T---------AA-------AT-A--TT-------------TTCT-CTTTCAATGTTA-TTATTTT--GT-A-AT-------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA----------T--AT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------ATGAGGT------------------A------GTTA-G------GA---T-------------------------GGT------------T-TTAA-GTT------A-------A--T-------TATTTATGATG-A-TCCAGCA------------------AAA--C---ATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATG---TAACAT--C--------TT-TTTTAA--T---ACTAAAAGTAATATTAAGT-----A----T-----ACAAT---TA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAAT------TGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCATAA--CAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttC-TGTTG-AT---ATGTTA-AGTTTTTGAGCATTAAGT------AATTAGGGT-----GGT------------T-TAAA-GTT------AA---T-------------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGTATG-------------GCATCTG---TA----------------T-TTATTT--TGCAAAAAAAAATTATGTAA--A-----G----A-----A-AATGAATA-----ACTT-----GT---CAACTT-G---ATTTA----TGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-T------AAAA----AAA-T-AA---------AGCTCTAAA--AAA-TAACTGAAAGAGCA---A--AGGAAAATGG----AAA--------AAAAAAT--AGAGCATGAA----AAA---AA-AATAAAAAAAA---TATAGT----AATATAATTT-T----A-AAA-------------------A------C---A----C------TT-----GTTTT------CT-A-TAT--------G------------AATGATAAT--------------T----------------TGTATATAAAA--GATCTATGGTTCTCTGGGACGACCCTCT-A--A-T--T-A----TTGACATTTTTTTTTAGAT------TA-T--------GTC----ATTAA-AATAAAATATATATGCTTTC---TCATTCAAT-G-AAAAAAAAAAATTATTTTT---G-CAA-------GTCA--GTT-----GG---TA-AGT-ATTTTGGTATAATTTATTTAAAATGG-AT-A--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA----------T--GT-TTTGGAA-AGTT--T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------GTGTAGTTAAGTCTTTTC-TGTTG-AT---ATGTCA-AGTTT-TCA---TTA--T------GA------------AGTAATTACAGTGG-T-TTAA-GT------------------T-------TACACATGATG-A-TCCAACA------------------AAA--C---ATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACAAT---TA-----A--TAACATGTA--T-A-TG-G---ATTTA----TGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--AAA-AAA--------------AAGAGCACAAA-A-AAG-A----GAAG------A--AAA-GAAT-GAAAGAATA---AG-AATAAAA-GCTCTTAAA--------AAAAAAGAAAAAGCTCTAAAAGTAAAAAGAGCAAAAAAAGTAA---AAAAAA----AATAG-AGCTCT----A-AAAAAAGAAAAGAAAAGAAGAGAAAA-AAA---ATG--T------TT-----T-CCA------TC-ATTCT--------G------------TATGTTA----------------A----------------TGTATAAAAAATTGGTCTATGGATTTCTGGGACAACCCTCAAG--A-A--T------TTGATA---------AGGT------T-------------------------ATG--------------TC---A---T---T-A-AA---------ATA-CT--------AA-------AT-A--TT-------------TTCT-GGAGCAATGTAA-TTATTTT--GT-A-A-------------ACCTCAA--------------AAGCTTAATTATT---T-AAGTCATTTTGGTAAGT--AT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------GCGTAATG---TCTTTT--TATTGAATAAAATATTGTACTTTCTG----TTA--TTCTCTGGA------------G--------------T-CTAA-GTG------AAGTTT--C--T-------TTTCTGT--TG-A-TAT-ATT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGGC------------ATGTGTA-------------CC---------AACATG-T--------TT-TTTTTT--TG--TAT---ATTTATTTTA--T-----GTAAAG-----ACAAC---TA-----A--TACC--GTGTCT-ACTT-G---ATTTA----TGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgAAAAAATTA--GAA-AAA--GCTC-T------TAAA----AAG-A-AA-------AAAGCTCTAAA--A---TAATTCAAAGAGCA---A--AAGAAAA-TG----AGA--------AAAAAAT--AGAGCATGAA----AAAAAGAA-AATAAAAGAAA---AAAGAATGTAAATAT-ATATGT----ATAAA-------------------AAAA-AGC---ATG----------T-----A-TT-------CT-A-TCT--------G------------TATGTTA----------------T----------------TGTA---------GTTCTATGGATTTCTGGGACAACCCTCT-A--A-C--T-AGCGTTCAATG---------AAAT------TG-T--------TTT----GT--A-AATA--------------TC---AAATT---TTGTAA---------TCA-TTTT---GGTAA-------GT-A--TTT-----TAGTATATTTT-ATTTTGGTATAATTTATTTTAGGT-GGAT-A--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA----------T--GT-TTTGACA-ATTT--T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------GTGAAGTT---TCTTTTC-TGTTG-AT---ATGTTA-AGTTTCAGA---TTA--T------GA------------AGT------------T-TTAA-GTA------AA---T--AACTCACCGGGTACCTATGATG-A-TCC--CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGTATG-------------GAATCTGCATCAACATGGG--------GT-GTTTTT--TG--AAAAAAAATTATGTTA--T-----G----A-----A-AAT---TA-----A--T-----GTC--T-ACTT-G---ATTTA----CAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAATAAA--GCTC-T------AAAA----AAATATAAG-AGCACAAAG---TAAAGAAAA-AAAATGTAAGACCATTAA--AAAAAAA-GA----AGACTCAAAATAAAAAAT--AAAGCTCTAA----AAAAAAAG-AAAGAAATAAGGCTAAAAAA----ACTCT-AAA-------A-AAG-------------------AAAATAGCCCAATG--T------TTTTGGTA-TTA------TTTA-TCT--------G------------TATGTTG----------------TTATGTTATTGTATATTTGTATAAAAGA--GTTTTGTAAACTTCTGGGATGATCCTT--G--A-AATT-T----TTGATA---------GA--------------------TT------------ATA--------------TC---A--TT---A-G-AA---------ATA-AT--------AA-------AT-G--TTT-----T--------CT-CTTTCAATGAAATT-ATTTT--GT-A-AT-------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA----------T--AT-TTTAGTA-AATT--T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------GTGAATTT---TTTTTTC-TGTTG-AT---ATGTTA-AGTTCCTGA---TTA--T------GAGGTAATTAGGGTGGT------------T-TTAA-GTT------A-------A--T-------TACCTATGATG-ATTCT-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGCATG-------------GCATATG---TAACAC--C--------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA-AAA--GGGCAT------AAAA----AAG-A-AAA-T----AAAGCTCTAAA--AAAATAATTAAAAGAGCA---T--NNNNNNN-NN----NNN--------NNNNNNN--NNNNNNNNNN----NNNNTGAA-CA-----GAGC---ACAAAA----CATATCATAT-C----A-TAT-------------------AGTA-CTT---ATGGCC------TT-----A-TTGGT----CT---TCTTGTTAAATA------------TATATTA----------------T----------------TGTATAAAAAT--GGTCTATAAATTTCTGGGACGACCCTC--A--ACT--T-A----CTGAAA---------AAAA------GAGT--------TTCAACTGC--A-ACTC--------------CCA--AAACC---T-A-AA---------TTA-TTTT-----CAA-------AT-A--TTT------------TTCT-AT----ATATATTCTTTTTAAAGT-A-ATAA--C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A----------T--AC-TAGGGTA---TT--C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGTA---AA--------ATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA--T------GA------------GGT------------TATTAAGGTTTTATTAAA---TTAA--T-------TACCTATGAAG-G-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC--ACG-------------TTACATG---TACCAT--CTTATGTTGTT-TTTTTT--TG--CATCCAGA-TATTTTA--T-----G----AAGAGGACAAT---TA-----A--T-----A------ACTT-GGATACCTG----TAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AA-AAA--GCTC-TTTTAATAAAA----AAA-A-AAG-A----Aagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|7 : tagttttgttcttatagcatgtAAAAAAGAA--GAA-AAA---------------AAG----AAA-A-AAG-A----AAGG-TCTAAA--AAA-TAAgaaaaaaagaaaaaagaaaggtctaaaaaataaaagagcataaaagagaaaacataaaactctaaaaaataattgaaagaacagaaaaaaagaaaaaaaaaagaaattaacaggcacaaaaaattacatgtttggtacttatggccttattgggtgtcttgtctgtatgttactgtaaggtctaacaatttcatggacaactctcaaattattaataaaatgagacttatgttttctcttccaatataattcccaaaacctaaattattttcaagcaatttcattatagatctaaatatatatttttatttcttgttatttttcaaagaaataatcagttttacccaatcaactttttatcaagtcatttatatttggaaactgggttaatccagttaaattgactaaaatttgtaatctctgttattctctggagtaaatatttttctgttgataagtaaagcttctgattaagaggtaattagtgtggttttaacttaattacctatgatgtgtctgcaaaacatcacatcatcagttattttcattccagtttaagaaattcacaattagtagataattaacaaacaattattgtgttgctatggtgatcagatagttatatattacatataacatcttgtttttttgtgcatacaaatattttatgtagagaacaattaataacttggatatgtgtattatgttgccataagtatatcagacctgctttttttagtttaatgaatgtttcattagttataattgcttttttacatataagattttcatt
gi|7 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaAAAAAATAA----A-AGA--GCAT-A------AAAG----AGA-A-AAC-AT---AAAACTCTAAA--AAA-TAATTGAAAGAACA---G--AAAAAAA-GA----AAA--------AAAAAA----------------------GAA-ATTAACAGGCA---CAAAAA----ATTAC-ATGT-T----T-GGT-------------------A------CTT-ATGGCC------TT-----A-TTGGGTGTCTT-G-TCT--------G------------TATGTTA----------------C----------------TGTA------A--GGTCTAACAATTTCATGGACAACTCTC--A--A-A--TTA----TTAATA---------AAATGAGACTTA-TGTTTTCTCTTCCA--AT--ATAAT---------------TCCCAAAACC---T-A-AA---------TTA-TTTTCAAG-CAATTTCATTAT-AGATCTAAATATA---TATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-AT-AATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCA----------TTTATATTTGGAA-ACTG------GGTTAATCCAG---------TTAA---ATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT-----------------AAATA---T-TTTTC-TGTTG-AT---AAGTAA-AGCTTCTGA---TTA--A------GA------------GGTAATTAGTGTGGTT-TTAA-CTT------AA---T-------------TACCTATGATGTG-TCT-GCA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATATATT-------------ACATA-----TAACAT--C--------TTGTTTTTTTGTG--CATACAAA-TATTTTA--TGTAGAG----A-----ACAAT---TA-----A--T-----A------ACTTGG---A--TA----TGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTaagagcataaaagagaaaacataaaactctaaaaaataattgaaagaacagaaaaaaagaaaaaaaaaagaaattaacaggcacaaaaaattacatgtttggtacttatggccttattgggtgtcttgtctgtatgttactgtaaggtctaacaatttcatggacaactctcaaattattaataaaatgagacttatgttttctcttccaatataattcccaaaacctaaattattttcaagcaatttcattatagatctaaatatatatttttatttcttgttatttttcaaagaaataatcagttttacccaatcaactttttatcaagtcatttatatttggaaactgggttaatccagttaaattgactaaaatttgtaatctctgttattctctggagtaaatatttttctgttgataagtaaagcttctgattaagaggtaattagtgtggttttaacttaattacctatgatgtgtctgcaaaacatcacatcatcagttattttcattccagtttaagaaattcacaattagtagataattaacaaacaattattgtgttgctatggtgatcagatagttatatattacatataacatcttgtttttttgtgcatacaaatattttatgtagagaacaattaataacttggatatgtgtattatgttgccataagtatatcagacctgctttttttagtttaatgaatgtttcattagttataattgcttttttacatataagattttcatt
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaaaaaaagaagaaaaaaagaaaaaagaaaggtctT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : A---A--AAAAAAA-AA----AAA--------AAAAAAA--AAAGCACAAA----AAAAAAAA-AAAAACAGCTA---AAAAAA----AA----------------AAA-------------------AAGA-AGCTC-ATA--A------TT-----T-TTG------TT-A-TTTATTT----G------------TATGTTATTTTGTTATTGTATAAT----------------TGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC--G--A-AAGT-A----TTGATA---------ACAT------AA-T--------ATC----AT--A-AA---------------------AAAT--------AA---------T-------------AA-------AT-A--TT-------G---T---CT-ATTTCATTGTAATT-ATTTT--GT-A------------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA----------T--AT-TTTCGTA-AATT--TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAGTGAAGTT---TCTTTTC-TGTTG-AT---ATAATA-AGTTTCTGA---TTA--T------GA------------GGTAATTAGGGTGGTT-TTAA-GTT------AA---T-------------TGCCTATGATG-A-TCCCACA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAGATG-------------GCAAATG---TAA-AT--C--------TT-TTTTTA--T---ATTAAAAGTCATATTA--T-----G----AAAAG-ACAAT---TAATAACA--T-----GTA--T-ATTT-G---ATCTA----TAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 3333333 11111111111 22222222222222 111111111 11 1111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3333333333333333333333333 33333333333333 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222 222222222222 333333333 1111 1 222222222 11111 3333333333333333 1111 0000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 111 111 2222222222222 22222222222 1111 66666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 111111 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 333 5 0000 3 55 666 3333333 5 66 5 3 77 88888888888 5 22222222222222 999999999 66 22 3 888 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 7777777777777777777777777 1 1 99999999999999 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 4 5 4 1111111111 66 5 1 444444444444 2 000000000 333 3 0000 0 333333333 88888 5 2222222222222222 2222 1 4 4 777 4 0 777 0000000000000000000000000000000000000000000000000000000000000000000000 4 4 4444444444444444444444 66 777 88 333 5 5 5 666 99 5 44 2 66 2 7777777777777 0 888 0 88888888888 5 77 3333 22 3 1 00000000000000000000000000000000000000000000000000 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 000000 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 3 1 555 888 5 11 3 0 7
lowQualScore : . ... . .... . .. ... ....... . .. . . .. ........... . .............. ......... .. .. . ... .... ................................................................................................................................ .. ......................... . . .............. ......................................................................................................................................................................................................... . . . . .......... .. . . ............ . ......... ... . .... . ......... ..... . ................ .... . . . ... . . ... ...................................................................... . . ...................... .. ... .. ... . . . ... .. . .. . .. . ............. . ... . ........... . .. .... .. . . .................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . ...... . . ... ...... ...................... . ....... .... . . ....... . . ... ... . .. . . .
lowQualScore : 6 111 7 0000 5 55 111 5555555 6 99 0 9 99 44444444444 0 99999999999999 666666666 88 88 0 888 6666 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 99 0000000000000000000000000 4 1 55555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 5 0 5 9999999999 99 0 2 000000000000 8 666666666 000 1 6666 0 000000000 22222 0 1111111111111111 1111 4 4 4 888 4 1 888 7777777777777777777777777777777777777777777777777777777777777777777777 4 4 4444444444444444444444 11 888 66 444 0 0 0 555 22 0 55 2 88 2 5555555555555 1 888 1 22222222222 7 99 7777 77 2 0 44444444444444444444444444444444444444444444444444 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 777777 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 2 4 111 888 7 99 3 7 5
consensus : AAAAAATAA--GAA-AAA----GCTC-TAAAAAAA-A-AAG-A----AAAGCTCTAAA--AAA-TAATTGAA--AGAGC----A---A--AAAAAAA-GAAGA--------A-----AAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAA-------------------AAAA-AGC---A-TG-----------C------TTNTTG------T------TA----TCTGT------------AT--------G--------TTA--TTGTATA--------A--------AAAA--GGTCTATGAATTTCTGGGACGACCCTC--GAAA-T-A----TTGATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAATAA--GAA-AAA----GCTC-TAAAAAAA-A-AAG-A----AAAGCTCTAAA--AAA-TAATTGAA--AGAGC----A---A--AAAAAAA-GAAGA--------A-----AAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAA-------------------AAAA-AGC---A-TG-----------C------TTNTTG------T------TA----TCTGT------------AT--------G--------TTA--TTGTATA--------A--------AAAA--GGTCTATGAATTTCTGGGACGACCCTC--GAN--T-A----TTGATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA-AAAAT--GCTC-TAAAGAAA-A-AAGTAT---AAAGCTCTAAA--AAA-TAATTGAA--AGAGC----AT--ATTAAAAAAA-GAAGA--------A-----AAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGTTACAAAAA-------------------AAAA-AAC---AATG-----------CCCAAGATTCTTG------T------TA----TTTATCAGTATTGTATTAT--------G--------TTA--CTGTATA--------A--------AAAT--GGTCTATAAACTTCTGGGACGACCCTT--GAAATT-A----TTGATA---------AAGT------AA-T--------TTA----TT--A-TTTA--------------TT---GAA----------AA---------TTA-T---------AA-------AT-A--TTT-----T--------CT-CTTTCAATGTTATT-ATTTT--GT-A-AT------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA----------T--AT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------A-TGAGGT------------------A------GTTA-G------GA---T-------------------------GGT------------T-TTAAG------TTA-----A--T-------TATTTATGATG-A-TCCAGCA------------------AAA--C---ATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATG---TAACAT--C--------TT-TTTTAA--T---ACTAAAAGTAATATTAAGT-----A----T-----ACAAT---TA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAAT------TGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCATAA--CAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttCT-GTTG-AT---ATGTTA-AGTTTTTGAGCATTAAGT------AATTAGGGT-----GGT------------T-TAAAG------TTAA---T-----------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGTATG-------------GCATCTG---TA----------------T-TTATTT--TGCAAAAAAAAATTATGTAA--A-----G----A-----A-AATGAATA-----ACTT-----GT---CAACTT-G---ATTTA----TGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------AGCTCTAAA--AAA-TAACTGAA--AGAGC----A---A--AGGAAAATGGAAA--------A-----AAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAATTT--TA---AAA-------------------A------C---A--------------C------TTGTTT------TC-----TA----TATGA------------AT--------G--------ATAATTTGTATA--------T--------AAAA--GATCTATGGTTCTCTGGGACGACCCTCT-AAT--T-A----TTGACATTTTTTTTTAGAT------TA-T--------GTC----ATTAA-AATAAAATATATATGCTTTC---TCA-TTCAAT-G-AAAAAAAAAAATTATTTTT---G-CAA-------GTCA--GTT-----GG---TA-AGT-ATTTTGGTATAATTTATTTAAAATGG-ATA--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA----------T--GT-TTTGGAA-AGTT--T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------G-TGTAGTTAAGTCTTTTCT-GTTG-AT---ATGTCA-AGTTT-TCA---TTA--T------GA------------AGTAATTACAGTGG-T-TTAAG------T----------T-------TACACATGATG-A-TCCAACA------------------AAA--C---ATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACAAT---TA-----A--TAACATGTA--T-A-TG-G---ATTTA----TGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--AAA-AAAAAGAGCAC-AAAAAAGA-G-AAG-A----AAAGAATGAAA--GAA-TAA--GAATAAAAGCTCTTA---A--AAAAAAA-GAAAA--------AGCTCTAAAAGTA--------AAAAGAGCAAA-AAAAGTAA---AAAAAA----AATAG-AGCTC-TA---AAAAAAGAAAAGAAAAGAAGAGAAAA-AAA---A-TG-----------T------TTTCCA------T------CAT---TCTGT------------AT--------G--------TTA--ATGTATA--------A--------AAAATTGGTCTATGGATTTCTGGGACAACCCTCAAGAA--T------TTGATA---------AGGT------T-------------------------ATG--------------TC---A----T---T-A-AA---------ATA-CT--------AA-------AT-A--TT-------------TTCT-GGAGCAATGTAA-TTATTTT--GT-A-A------------ACCTCAA--------------AAGCTTAATTATT---T-AAGTCATTTTGGTAAGT--AT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------G-CGTAATG---TCTTTT-T-ATTGAATAAAATATTGTACTTTCTG----TTA--TTCTCTGGA------------G--------------T-CTAAG------TGAAGTTTC--T-------TTTCTGT--TG-A-TAT-ATT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGGC------------ATGTGTA-------------CC---------AACATG-T--------TT-TTTTTT--TG--TAT---ATTTATTTTA--T-----GTAAAG-----ACAAC---TA-----A--TACC--GTGTCT-ACTT-G---ATTTA----TGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgAAAAAATTA--GAA-AAA----GCTC-TTAAAAAG-A-AA-------AAAGCTCTAAA--A---TAATTCAA--AGAGC----A---A--AAGAAAA-TGAGA--------A-----AAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-ATATG-TAT--AAA-------------------AAAA-AGC---A-TG-------------------TATT-------C------TA----TCTGT------------AT--------G--------TTA--TTGTA-------------------------GTTCTATGGATTTCTGGGACAACCCTCT-AAC--T-AGCGTTCAATG---------AAAT------TG-T--------TTT----GT--A-AATA--------------TC---AAA-TT---TTGTAA---------TCA-TTTT---GGTAA-------GT-A--TTT-----TAGTATATTTT-ATTTTGGTATAATTTATTTTAGGT-GGATA--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA----------T--GT-TTTGACA-ATTT--T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCAGA---TTA--T------GA------------AGT------------T-TTAAG------TAAA---TAACTCACCGGGTACCTATGATG-A-TCC--CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGTATG-------------GAATCTGCATCAACATGGG--------GT-GTTTTT--TG--AAAAAAAATTATGTTA--T-----G----A-----A-AAT---TA-----A--T-----GTC--T-ACTT-G---ATTTA----CAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAATAAA----GCTC-TAAAAAAATATAAG-AGCACAAAG---TAAAGAAAA-AAAATGTA--AGACC----ATTAA--AAAAAAA-GAAGACTCAAAATA-----AAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-AAA----A---AAG-------------------AAAATAGCCCAA-TG-----------T------TTTTGG------TATTATTTA----TCTGT------------AT--------GTTGTTATGTTA--TTGTATATTTGTATAA--------AAGA--GTTTTGTAAACTTCTGGGATGATCCTT--GAAATT-T----TTGATA---------GA--------------------TT------------ATA--------------TC---A---TT---A-G-AA---------ATA-AT--------AA-------AT-G--TTT-----T--------CT-CTTTCAATGAAATT-ATTTT--GT-A-AT------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA----------T--AT-TTTAGTA-AATT--T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------G-TGAATTT---TTTTTTCT-GTTG-AT---ATGTTA-AGTTCCTGA---TTA--T------GAGGTAATTAGGGTGGT------------T-TTAAG------TTA-----A--T-------TACCTATGATG-ATTCT-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGCATG-------------GCATATG---TAACAC--C--------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA-AAA----GGGCATAAAAAAG-A-AAA-T----AAAGCTCTAAA--AAAATAATTAAA--AGAGC----A---T--NNNNNNN-NNNNN--------N-----NNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCATAT--CA---TAT-------------------AGTA-CTT---A-TGGCCTTATTGGTC------TTCTTG------T------TA----AATAT------------AT--------A--------TTA--TTGTATA--------A--------AAAT--GGTCTATAAATTTCTGGGACGACCCTC--AAC--TTA----CTGAAA---------AAAA------GAGT--------TTCAACTGC--A-ACTC--------------CC---AAAACC---T-A-AA---------TTA-TTTT-----CAA-------AT-A--TTT-----T-------TCT-AT----ATATATTCTTTTTAAAGT-A-ATAA-C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A----------T--AC-TAGGGTA---TT--C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGT----AA--------AATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA--T------GA------------GGT------------TATTAAGGTTTTATTAAAT-TAA-T-------TACCTATGAAG-G-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC--ACG-------------TTACATG---TACCAT--CTTATGTTGTT-TTTTTT--TG--CATCCAGA-TATTTTA--T-----G----AAGAGGACAAT---TA-----A--T-----A------ACTT-GGATACCTG----TAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA-AAA-----------AAGAAA-A-AAG-A----AAGG-TCTAAA--AAA-TAAagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|7 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaAAAAAATAA----A-AGA----GCAT-AAAAGAGA-A-AAC-AT---AAAACTCTAAA--AAA-TAATTGAA--AGAAC----A---G--AAAAAAA-GAAAA--------A-----AAAAA----------------GAAATTAACAGGCA---CAAAAA----ATTAC-ATGT--TT---GGT-------------------A------CTT-A-TGGC---------C------TTATTGGGTGTCT------TG----TCTGT------------AT--------G--------TTA--CTGTA----------------------A--GGTCTAACAATTTCATGGACAACTCTC--AAA--TTA----TTAATA---------AAATGAGACTTA-TGTTTTCTCTTCCA--AT--ATAAT---------------TCCCAAAA-CC---T-A-AA---------TTA-TTTTCAAG-CAATTTCATTAT-AGATCTAAATATA---TATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-ATAATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCA----------TTTATATTTGGAA-ACTG------GGTTAATCCAG---------TTAA---ATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT------------------AAATA---T-TTTTCT-GTTG-AT---AAGTAA-AGCTTCTGA---TTA--A------GA------------GGTAATTAGTGTGGTT-TTAAC------TTAA---T-----------TACCTATGATGTG-TCT-GCA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATATATT-------------ACATA-----TAACAT--C--------TTGTTTTTTTGTG--CATACAAA-TATTTTA--TGTAGAG----A-----ACAAT---TA-----A--T-----A------ACTTGG---A--TA----TGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTaagagcataaaagagaaaacataaaactctaaaaaataattgaaagaacagaaaaaaagaaaaaaaaaagaaattaacaggcacaaaaaattacatgtttggtacttatggccttattgggtgtcttgtctgtatgttactgtaaggtctaacaatttcatggacaactctcaaattattaataaaatgagacttatgttttctcttccaatataattcccaaaacctaaattattttcaagcaatttcattatagatctaaatatatatttttatttcttgttatttttcaaagaaataatcagttttacccaatcaactttttatcaagtcatttatatttggaaactgggttaatccagttaaattgactaaaatttgtaatctctgttattctctggagtaaatatttttctgttgataagtaaagcttctgattaagaggtaattagtgtggttttaacttaattacctatgatgtgtctgcaaaacatcacatcatcagttattttcattccagtttaagaaattcacaattagtagataattaacaaacaattattgtgttgctatggtgatcagatagttatatattacatataacatcttgtttttttgtgcatacaaatattttatgtagagaacaattaataacttggatatgtgtattatgttgccataagtatatcagacctgctttttttagtttaatgaatgtttcattagttataattgcttttttacatataagattttcatt
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaaaaaaagaagaaaaaaagaaaaaagaaaggtctT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : ----A---A--AAAAAAA-AAAAA--------A-----AAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA---------------AAA-------------------AAGA-AGCTC-A-TA-----------A------TTTTTG------T------TATTTATTTGT------------ATGTTATTTTG--------TTA--TTGTATA--------ATTGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTC--GAAAGT-A----TTGATA---------ACAT------AA-T--------ATC----AT--A-AA---------------------AAA-T--------AA---------T-------------AA-------AT-A--TT-------G---T---CT-ATTTCATTGTAATT-ATTTT--GT-A-----------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA----------T--AT-TTTCGTA-AATT--TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAG-TGAAGTT---TCTTTTCT-GTTG-AT---ATAATA-AGTTTCTGA---TTA--T------GA------------GGTAATTAGGGTGGTT-TTAAG------TTAA---T-----------TGCCTATGATG-A-TCCCACA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAGATG-------------GCAAATG---TAA-AT--C--------TT-TTTTTA--T---ATTAAAAGTCATATTA--T-----G----AAAAG-ACAAT---TAATAACA--T-----GTA--T-ATTT-G---ATCTA----TAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 3333333 111111 11111111 1111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3333333333333333333333333 11111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222 222222222222 333333333 1111 1 222222222 11111 3333333333333333 1111 0000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 111 111 2222222222222 22222222222 1111 66666666666666666666666666666666666666666666666666 111 1111 111 11111 1111 1111111 1111 222222222 111111 1 222 222222 6666666666666666666666 3333333 1111 1 2222222 222
lowQualScore : 1 3333333 77 0 5 0 5 5 3333333 5 2 66 55 3 666666 666 88888888 7 0 666 44 77 3 888 0000 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 7777777777777777777777777 1 1 2 5 55555555 5 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 4 5 4 1111111111 66 5 1 444444444444 2 000000000 333 3 0000 0 333333333 88888 5 2222222222222222 2222 1 4 4 777 4 0 777 0000000000000000000000000000000000000000000000000000000000000000000000 4 4 4444444444444444444444 66 777 88 333 5 5 5 666 99 5 44 2 66 2 7777777777777 0 888 0 88888888888 5 77 3333 22 3 1 00000000000000000000000000000000000000000000000000 5 777 0000 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 000000 0 1 000 888888 9999999999999999999999 1 7777777 3333 0 2 8888888 3 1 555 888 5 11 3 0 7
lowQualScore : . ....... .. . . . . . ....... . . .. .. . ...... ... ........ . . ... .. .. . ... .... . ............................................................................................................. .. ......................... . . . . ........ . ......................................................................................................................................................................................................... . . . . .......... .. . . ............ . ......... ... . .... . ......... ..... . ................ .... . . . ... . . ... ...................................................................... . . ...................... .. ... .. ... . . . ... .. . .. . .. . ............. . ... . ........... . .. .... .. . . .................................................. . ... .... . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . ...... . . ... ...... ...................... . ....... .... . . ....... . . ... ... . .. . . .
lowQualScore : 6 6666666 99 2 0 5 0 0 5555555 0 5 99 11 9 888888 555 11111111 8 8 111 99 99 0 888 6666 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 0000000000000000000000000 4 1 2 0 88888888 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 5 0 5 9999999999 99 0 2 000000000000 8 666666666 000 1 6666 0 000000000 22222 0 1111111111111111 1111 4 4 4 888 4 1 888 7777777777777777777777777777777777777777777777777777777777777777777777 4 4 4444444444444444444444 11 888 66 444 0 0 0 555 22 0 55 2 88 2 5555555555555 1 888 1 22222222222 7 99 7777 77 2 0 44444444444444444444444444444444444444444444444444 0 555 6666 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 777777 6 4 000 000000 7777777777777777777777 9 1111111 0000 0 8 4444444 2 4 111 888 7 99 3 7 5
consensus : AAAAAATAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA---A--AAAAAAA-G-AAGA--------AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAAAAAA-AGC---A-TG-----------C------TTNTTG------T------TA----TCTGT------------AT--------G--------TTA--TTGTATA--------A--------AAAA--GGTCTATGAATTTCTGGGACGACCCTCGA-AN-TA----TT-GATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAATAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA---A--AAAAAAA-G-AAGA--------AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAAAAAA-AGC---A-TG-----------C------TTNTTG------T------TA----TCTGT------------AT--------G--------TTA--TTGTATA--------A--------AAAA--GGTCTATGAATTTCTGGGACGACCCTCGA-AA-TA----TT-GATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA--AAAATGCTC-TAAAGAAA-A-AAGTAT---AAA-GCTCTAAA--AAA-TAATTGAAAGAGCAT--ATTAAAAAAA-G-AAGA--------AAAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGTTACAAAAAAAAA-AAC---AATG-----------CCCAAGATTCTTG------T------TA----TTTATCAGTATTGTATTAT--------G--------TTA--CTGTATA--------A--------AAAT--GGTCTATAAACTTCTGGGACGACCCTTGA-AATTA----TT-GATA---------AAGT------AA-T--------TTA----TT--A-TTTA--------------TT---GAA----------AA---------TTA-T---------AA-------AT-A--TT-------------TTCT-CTTTCAATGTTA-TTATTTT--GT-A-AT------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA----------T--AT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------A-TGAGGT------------------A------GTTA-G------GA---T-------------------------GGT------------T-TTAAG------TTA-----A--T-------TATTTATGATG-A-TCCAGCA------------------AAA--C---ATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTATT----TATGA-TGA-TC-CAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATG---TAACAT--C--------TT-TTTTAA--T---ACTAAAAGTAATATTAAGT-----A----T-----ACAAT---TA-----A--T-----A------ACTT-GTACATTTAAATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAAT------TGA-TTGAA---TCAT-A----AAAAATC----CC--------TA-------TTGTTCTA-------AAACT-TTT-AAAATCT------------------TTTTGCCATAA--CAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttCT-GTTG-AT---ATGTTA-AGTTTTTGAGCATTAAGT------AATTAGGGT-----GGT------------T-TAAAG------TTAA---T-----------TACCTATGATG-A-TCC-ACATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAATTA--GTA-GA-TAG-CA-AAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGTATG-------------GCATCTG---TA----------------T-TTATTT--TGCAAAAAAAAATTATGTAA--A-----G----A-----A-AATGAATA-----ACTT-----GT---CAACTT-G---ATTTA----TGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA----AAAAAAA----AT--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCATG--ACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------A-GCTCTAAA--AAA-TAACTGAAAGAGCA---A--AGGAAAATG-GAAA--------AAAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAATTT--TA---AAAA------C---A--------------C------TTGTTT------TC-----TA----TATGA------------AT--------G--------ATAATTTGTATA--------T--------AAAA--GATCTATGGTTCTCTGGGACGACCCTCTA-AT-TA----TT-GACATTTTTTTTTAGAT------TA-T--------GTC----ATTAA-AATAAAATATATATGCTTTC---TCA-TTCAAT-G-AAAAAAAAAAATTATTTTT---G-CAA-------GTCA--GTT-----GG---TA-AGT-ATTTTGGTATAATTTATTTAAAATGG-ATA--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA----------T--GT-TTTGGAA-AGTT--T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------G-TGTAGTTAAGTCTTTTCT-GTTG-AT---ATGTCA-AGTTT-TCA---TTA--T------GA------------AGTAATTACAGTGG-T-TTAAG------T----------T-------TACACATGATG-A-TCCAACA------------------AAA--C---ATCATACACTTGGT
gi|13 : ATTATTGTA--A-----A----G-----ACAAT---TA-----A--TAACATGTA--T-A-TG-G---ATTTA----TGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A----AAAAAAA----------------AATG----------A-------AA-----TT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtAAAGAATAA--GAATAAAA--GCTC-TTAAAAAA-A-AAG-A----AAAAGCTCTAAA--AG--TAA---AAAGAGCA---A--AAAAA---GTAAAA--------AAAAAATAGAGCTCTAAAAAAAGAAAAGAAAAGAAG---AGAAAA----AAAAT-GTTT--TC-------------C---A-T--------------------CATT---------------------CTGT------------AT--------G--------TTA--ATGTATA--------A--------AAAATTGGTCTATGGATTTCTGGGACAACCCTCAAGAA-T-----TT-GATA---------AGGT------T-------------------------ATG--------------TC---A----T---T-A-AA---------ATA-CT--------AA-------AT-A--TT-------------TTCT-GGAGCAATGTAA-TTATTTT--GT-A-A------------ACCTCAA--------------AAGCTTAATTATT---T-AAGTCATTTTGGTAAGT--AT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------G-CGTAATG---TCTTTT-T-ATTGAATAAAATATTGTACTTTCTG----TTA--TTCTCTGGA------------G--------------T-CTAAG------TGAAGTTTC--T-------TTTCTGT--TG-A-TAT-ATT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATTT------------A-CT-AA--AAGCAAT----------ACT-ATGGC------------ATGTGTA-------------CC---------AACATG-T--------TT-TTTTTT--TG--TAT---ATTTATTTTA--T-----GTAAAG-----ACAAC---TA-----A--TACC--GTGTCT-ACTT-G---ATTTA----TGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-A----AAAAAAA----TC--------AAAATAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAAT-A-A--TGTGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgaaagaataaaaaaaaaagagcacaaaaaagagaagaaaagaatgAAAAAATTA--GAA--AAA--GCTC-TTAAAAAG-A-AA-------AAA-GCTCTAAA--A---TAATTCAAAGAGCA---A--AAGAAAA-T-GAGA--------AAAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-ATATG-TAT--AAAAAAA-AGC---A-TG-------------------TATT-------C------TA----TCTGT------------AT--------G--------TTA--TTGTA-------------------------GTTCTATGGATTTCTGGGACAACCCTCTA-AC-TAGCGTTC-AATG---------AAAT------TG-T--------TTT----GT--A-AATA--------------TC---AAA-TT---TTGTAA---------TCA-TTTT---GGTAA-------GT-A--TTT-----TAGTATATTTT-ATTTTGGTATAATTTATTTTAGGT-GGATA--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA----------T--GT-TTTGACA-ATTT--T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCAGA---TTA--T------GA------------AGT------------T-TTAAG------TAAA---TAACTCACCGGGTACCTATGATG-A-TCC--CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAATAA--GTA-GA-TAACTT-AAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGTATG-------------GAATCTGCATCAACATGGG--------GT-GTTTTT--TG--AAAAAAAATTATGTTA--T-----G----A-----A-AAT---TA-----A--T-----GTC--T-ACTT-G---ATTTA----CAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT----------AAATTTTTT--------TTAATAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTGTGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAAT-AAA--GCTC-TAAAAAAATATAAG-AGCACAAA-G---TAAAGAAAA-AAAATGTAAGACCATTAA--AAAAAAA-G-AAGACTCAAAATAAAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-AAA----A---AAGAAAATAGCCCAA-TG-----------T------TTTTGG------TATTATTTA----TCTGT------------AT--------GTTGTTATGTTA--TTGTATATTTGTATAA--------AAGA--GTTTTGTAAACTTCTGGGATGATCCTTGA-AA-TT----TTTGATA---------GA--------------------TT------------ATA--------------TC---A---TT---A-G-AA---------ATA-AT--------AA-------AT-G--TTT-----T--------CT-CTTTCAATGAAATT-ATTTT--GT-A-AT------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA----------T--AT-TTTAGTA-AATT--T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------G-TGAATTT---TTTTTTCT-GTTG-AT---ATGTTA-AGTTCCTGA---TTA--T------GAGGTAATTAGGGTGGT------------T-TTAAG------TTA-----A--T-------TACCTATGATG-ATTCT-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGTTA--GTA-GATTAA-T---AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGCATG-------------GCATATG---TAACAC--C--------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA--AAA--GGGCATAAAAAAG-A-AAA-T----AAA-GCTCTAAA--AAAATAATTAAAAGAGCA---T--NNNNNNN-N-NNNN--------NNNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCATAT--CA---TATAGTA-CTT---A-TGGCCTTATTGGTC------TTCTTG------T------TA----AATAT------------AT--------A--------TTA--TTGTATA--------A--------AAAT--GGTCTATAAATTTCTGGGACGACCCTCAA-CT-TA----CT-GAAA---------AAAA------GAGT--------TTCAACTGC--A-ACTC--------------CC---AAAACC---T-A-AA---------TTA-TTTT-----CAA-------AT-A--TTT-----T-------TCT-AT----ATATATTCTTTTTAAAGT-A-ATAA-C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A----------T--AC-TAGGGTA---TT--C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGT----AA--------AATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA--T------GA------------GGT------------TATTAAGGTTTTATTAAAT-TAA-T-------TACCTATGAAG-G-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAATTT--GTA-GA-CAA-TT--AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC--ACG-------------TTACATG---TACCAT--CTTATGTTGTT-TTTTTT--TG--CATCCAGA-TATTTTA--T-----G----AAGAGGACAAT---TA-----A--T-----A------ACTT-GGATACCTG----TAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA--AAA---------AAGAAA-A-AAG-A----AAG-G-TCTAAA--AAA-TAAagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|7 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaAAAAAATAA----A--AGA--GCAT-AAAAGAGA-A-AAC-AT---AAA-ACTCTAAA--AAA-TAATTGAAAGAACA---G--AAAAAAA-G-AAAA--------AAAAAA----------------GAAATTAACAGGCA---CAAAAA----ATTAC-ATGT--TT---GGTA------CTT-A-TGGC---------C------TTATTGGGTGTCT------TG----TCTGT------------AT--------G--------TTA--CTGTA----------------------A--GGTCTAACAATTTCATGGACAACTCTCAA-AT-TA----TT-AATA---------AAATGAGACTTA-TGTTTTCTCTTCCA--AT--ATAAT---------------TCCCAAAA-CC---T-A-AA---------TTA-TTTTCAAG-CAATTTCATTAT-AGATCTAAATATA---TATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-ATAATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCA----------TTTATATTTGGAA-ACTG------GGTTAATCCAG---------TTAA---ATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT------------------AAATA---T-TTTTCT-GTTG-AT---AAGTAA-AGCTTCTGA---TTA--A------GA------------GGTAATTAGTGTGGTT-TTAAC------TTAA---T-----------TACCTATGATGTG-TCT-GCA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAATTA--GTA-GA-TAA-TT--AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATATATT-------------ACATA-----TAACAT--C--------TTGTTTTTTTGTG--CATACAAA-TATTTTA--TGTAGAG----A-----ACAAT---TA-----A--T-----A------ACTTGG---A--TA----TGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTaagagcataaaagagaaaacataaaactctaaaaaataattgaaagaacagaaaaaaagaaaaaaaaaagaaattaacaggcacaaaaaattacatgtttggtacttatggccttattgggtgtcttgtctgtatgttactgtaaggtctaacaatttcatggacaactctcaaattattaataaaatgagacttatgttttctcttccaatataattcccaaaacctaaattattttcaagcaatttcattatagatctaaatatatatttttatttcttgttatttttcaaagaaataatcagttttacccaatcaactttttatcaagtcatttatatttggaaactgggttaatccagttaaattgactaaaatttgtaatctctgttattctctggagtaaatatttttctgttgataagtaaagcttctgattaagaggtaattagtgtggttttaacttaattacctatgatgtgtctgcaaaacatcacatcatcagttattttcattccagtttaagaaattcacaattagtagataattaacaaacaattattgtgttgctatggtgatcagatagttatatattacatataacatcttgtttttttgtgcatacaaatattttatgtagagaacaattaataacttggatatgtgtattatgttgccataagtatatcagacctgctttttttagtttaatgaatgtttcattagttataattgcttttttacatataagattttcatt
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaaaaaaagaagaaaaaaagaaaaaagaaaggtctT-AAAATCTACTACAAT-G-G--TGTGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : A---A--AAAAAAA-A-AAAA--------AAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA---------------AAAAAGA-AGCTC-A-TA-----------A------TTTTTG------T------TATTTATTTGT------------ATGTTATTTTG--------TTA--TTGTATA--------ATTGTATAAAAAA--GTTTTATAAACTTCTGGGACGACCCTCGA-AAGTA----TT-GATA---------ACAT------AA-T--------ATC----AT--A-AA---------------------AAA-T--------AA---------T-------------AA-------AT-A--TT-------G---T---CT-ATTTCATTGTAATT-ATTTT--GT-A-----------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA----------T--AT-TTTCGTA-AATT--TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAG-TGAAGTT---TCTTTTCT-GTTG-AT---ATAATA-AGTTTCTGA---TTA--T------GA------------GGTAATTAGGGTGGTT-TTAAG------TTAA---T-----------TGCCTATGATG-A-TCCCACA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GA-TTA-TTTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAGATG-------------GCAAATG---TAA-AT--C--------TT-TTTTTA--T---ATTAAAAGTCATATTA--T-----G----AAAAG-ACAAT---TAATAACA--T-----GTA--T-ATTT-G---ATCTA----TAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGA----CAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAA--ATG--TGTGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
blockSeqs : T GAATA . A T T GAGCAC A C GA AA C TTAA TG CTCAAAAT T ATG AA TA A GCT TGTA AAAAAAGAAAATAGCCCAATGTTTTTGGTATTATTTATCTGTATGTTGTTATG AT TATTTGTATAAAAGA A G T G CTAGCGT T TTTTTTTTTAGATTATGTCATTAAAATAAAATATATATGCTTTCTCATTCAATGAAAAAAAAAAATTATTTTTGCAAGTCAGTTGGTAAGTATTTTGGTATAATTTATTTAAAATGGATACTGCATATTCTATATTGCAATTCCCGA A G C A TTTTGGTAAG TT A A TAATTTATTT G GATATTCTA TAT T TAAT T GGCTTTTT AGCCG . TATAAAATAAG TAAG C T A AAA T GCA TGAGGTAATTAGGGTGGTTTTAAGTTAAT T T ACATATATCATCTAGTCATAT AT TTA TA ATA . T C TTA AT . CA A GA G . CAT CTTATGTTG G TG GCAA AA T G TGTAAAGACAACTAATACCGTGTCT G GAT . G G GTA T CAGAC T A C T ATAA AAATG TAAT AAAATATG T C A CTTTCA T AAG ATTAT CAATTAATAACATGTATA T TATTACC CT T A TCATGAT A T TAG TAA T AT A A
blockSeqs : T AAAT . . . . CAT . C . A T A GT . T TCT AA GA A . . CATATCATATAGTACTTATGGCCTTATTGGTCTTCTTGTTAAATATATA . TAATTGTATAAAAAA G G A . AGTA . AAATGAGACTTATGTTTTCTCTTCCAATATAATTCCCAAAACCTAAATTATTTTCAAGCAATTTCATTATAGATCTAAATATATATTTTTATTTCTTGTTATTTTTCAAAGAAATAATCAGTTTTACCCAAT T G . G . . . T AATTTATTT A CTAA CTT T . T TGA A . TATATAG G C . . . . . TGAGGTTATTAAGGTTTTATTAAATTAAT . . AACA . . AA A . . . AA T . CA T TG G . . GGG . . GT AA T T TGAAAAGACAATTAATAACATGTAT . . . . G . . . . . C T A TGCT . AGT C G A TTTTCA T AAG ATTAT CAATTAATAACATGTATA T TATTACC C T T TCATG A C TA . . AA C G
blockSeqs : A GAA . . . . GA . C . A A A T . T ATG AA TA A . . AAAAAGAAGCTCATAATTTTTGTTATTTATTTGTATGTTATTTTG . TAAAAAATT T G T . TTA . AAATTGTTTTGTAAATATCAAATTTTGTAATCATTTTGGTAAGTATTTTAGTATATTTTATTTTGGTATAATTTATTTTAGGTGGATACTGTTTATCCTAT A G . G . . . C AGTTTTT G . TTT T . . TA T . TACTG T C . . . . . AGAGGTAATTAGTGTGGTTTTAACTTAAT . . CACA . . GA A . . . TA C . TG T CT G . . GT . . GA CC T T AAGACAATTAATAACATGTAT . . . . A . . . . . C T G TG . AGT C A A ATTTCT . . AA TTTTTTTTAATAT T . C . A TGG A C G . . GG A T
blockSeqs : T TTA . . . . AT . C . A T A G . T TCT NT AG A . . ATGTTTGGTACTTATGGCCTTATTGGGTGTCTTGTCTGTATG . TATAAAA T A G . ATT . AAAAGAGTTTCAACTGCAACTCCCAAAACCTAAATTATTTTCAAATATTTTTCTATATATATTCTTTTTAAAGTAATAACAGTTTTACCAAATC A A . G . . . T ATTTTTG T . TTT T . . TA T . AAAA T T . . . . . TGAGGTAATTAGGGTGGTTTTAAGTTAAT . . ATT . . GA A . . . TA T . TA C GG G . . C . . GC AC T G AGAAAATGAATAACTTGTCA . . . . A . . . . . C T A CA . AGT C . T CTTTTT . . A ATCAAATAT A . C . A TAA A C T . . AG A C
blockSeqs : G GAA . . . . GA . C . A T T N . N NNN AA TA C . . ATATGTATAAAAAAAAGCATGTATTCTATCTGTATG . TAAAAAT G A A . TTA . ACATAATATCATAAAAAATAATAAATATTGTCTATTTCATTGTAATTATTTTGTATTTATGTAA A G . G . . . T AATTT C . TTT . . . T A . TAG T C . . . . . TGAAGTTTTAAGTAAATAACTCACCGGG . . GCA . . CA T . . . T T . TG C AG A . . C . . GC AA T T TGAAGAGGACAATTAATA . . . . . . . . . . A . A TG . . C CTTTTT . . A TCAAAATAT A . C . T ATG A C T . . AA . A
blockSeqs : T A . . . . . . . . . . G G . A ACA . AA C . . AATTTTAAAAACACTTGTTTTCTATATGAATG . A G C A . TTA . AGGTTATGTCATTAAAATACTAAATATTTTCTGGAGCAATGTAATTATTTTGTAAACCTCAA T . . . . . . A TTCTA A . AA . . . T . . TAG A C . . . . . AGTAATTAGGGTGGTTTAAAGTTAAT . . GCA . . A A . . . T C . CG T CA A . . C . . A . . T TGTAGAGAACAATTAATA . . . . . . . . . . . . . T . . . . . . AATG . . . . T TGG A . G . . .
blockSeqs : . . . . . . . . A A . . . . . . . . GTTTTCCATCATTCTGTATG . . T A G . AT . GATTATATCATTAGAAATAATAAATGTTTTCTCTTTCAATGAAATTATTTTGTAATTCCCA . . . . . . . T ACTGG . . . . . . T . . . T . . . . . . TTCTCTGGAGTCTAAGTGAAGTTTCT . . GCA . . . . . . . . . . C . . . . . . . A TGAAAATTAATGTCT . . . . . T ATG . . . .
blockSeqs : . . . . . TGAAGTAATTACAGTGGTTTAAGTT . . CA . .
blockSeqCons : GAA**** ** GA***** A***** NA TAAAAA******************* TTA***** AATTTTN***** TA******* T*** ACA******************* A** CG ************* GC** TGAAAGACAATTAATACTGTCT**************************** *** **** AGT****** CTTTCT ATCAATAATATTAT******** C*** TNG****
originalCons : AAAAAATAA--GAA--AAA--GCTC-TAAAAAAA-A-AAG-A----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCA---A--AAAAAAA-G-AAGA--------AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAAAAAA-AGC---A-TG-----------C------TTNTTG------T------TA----TCTGT------------AT--------G--------TTA--TTGTATA--------A--------AAAA--GGTCTATGAATTTCTGGGACGACCCTCGA-AN-TA----TT-GATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTA-ANTT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-GCA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TG--AATAAAAATTATNTTA--T-----G----A-----ACAAT---TA-----A--T-----GT---T-ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAA----CN--------CAAATAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAAT-ATG--TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
finalCons : AAAAAATAAGAA----AAA--GCTC-TAAAAAAA-A-AAGA-----AAA-GCTCTAAA--AAA-TAATTGAAAGAGCAA-----AAAAAAA-G-AAGA--------AAAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAAAAAA-AGC---A-TG-----------C------TTNTTG------T------TA----TCTGT------------AT--------G--------TTA--TTGTATAAAAA-------------------GGTCTATGAATTTCTGGGACGACCCTCGA-ATTA-----TT-GATA---------AAAT------TA-T--------TTC----GT--A-AATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA-------AT-A--TTT-----TG---TATTCT-ATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------T--AT-TTTGGTAAATTTTN-----GTTGATNCTG---------TTTTTTTATTG----ACTA-AAATA-------TTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA--T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCCACA-------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAATTA--GTA-GA-TAA-TT-AAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGTATG-------------GCATATG---TAACAT--C--------TT-TTTTTT--TGC--ATAAAAATTATNTTATGAAAGACAATTAATACTGTCT----------------------------ACTT-G---ATTTA----TGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAGT------TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A----AAAAAAAATCAATAATATTAT--------TTTGTTCTA-------AAC---TTT-AAAATCTACNACAATNG----TGTGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 3333333 11111111111 22222222222222 1111111 11 1111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 44444444444444444444444 11111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222 22222222222222 333333333333 1111 1 222222222 11111 3333333333333333 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 33333333333333333333333 1 11 222222222222222 22222222222 11 2222 44444 111 11111 1111 1111111 1111 222222222 1 222 7777777777777777777777777777777 3333333 1111 1 1111111 222
lowQualScore : 1 333 5 0000 3 55 666 3333333 5 66 5 3 77 88888888888 5 22222222222222 4 6666666 3 22 3 888 0000 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 66 0 22222222222222222222222 777 1 777 55555555 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 4 5 4 8888888888 5 11111111111111 2 333333333333 3 0000 0 333333333 88888 5 2222222222222222 2222 1 4 4 777 4 0 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000 4 4 33333333333333333333333 66 777 88 7777 5 0 5 11 99 5 44 2 66 888888888888888 0 888 0 88888888888 5 77 9999 22 1 4444 5 5 55555 77 0 5 888 66 5 0 5 000 5 44444 5 5 3 0 3 0 0000 0000000 0 2222 888888888 1 3 1 0 6 33 0 1 000 1111111111111111111111111111111 1 7777777 3333 0 2 3333333 66 1 555 888 5 11 3 0 7
lowQualScore : . ... . .... . .. ... ....... . .. . . .. ........... . .............. . ....... . .. . ... .... .................................................................................................................................. .. . ....................... ... . ... ........ ........................................................................................................................................................................................................ . . . . .......... . .............. . ............ . .... . ......... ..... . ................ .... . . . ... . . ... ................................................................................ . . ....................... .. ... .. .... . . . .. .. . .. . .. ............... . ... . ........... . .. .... .. . .... . . ..... .. . . ... .. . . . ... . ..... . . . . . . .... ....... . .... ......... . . . . . .. . . ... ............................... . ....... .... . . ....... .. . ... ... . .. . . .
lowQualScore : 6 111 7 0000 5 55 111 5555555 6 99 0 9 99 44444444444 0 99999999999999 6 6666666 5 88 0 888 6666 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 1 00000000000000000000000 111 1 111 99999999 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 5 0 5 8888888888 0 88888888888888 8 111111111111 4 6666 0 000000000 22222 0 1111111111111111 1111 4 4 4 888 4 1 888 77777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 22222222222222222222222 11 888 66 6666 0 0 0 55 22 0 55 2 88 666666666666666 1 888 1 22222222222 7 99 4444 33 0 0000 0 0 22222 88 2 0 888 11 0 4 3 000 7 33333 7 7 0 3 6 4 1111 4444444 4 1111 000000000 0 2 0 8 6 66 6 4 000 9999999999999999999999999999999 9 1111111 0000 0 8 0000000 99 4 111 888 7 99 3 7 5
consensus : AAAAAATAA--GAA-AAA----GCTC-TAAAAAAA-A-AAG-A----AAAGCTCTAAA--AAA-TAATTGAA--AGAGC----A---A--AAAAAAA-GAAGA--------A-----AAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAA-------------------AAAA-AGC---A-TG-----------C------TTNTTG------T------TA-TC----TGT------------ATG--------T--------TA--TTGTATA-------A---------AAA---GG--TCTATGAATTTCTGGGACGACCCTC--GAAATTA----TTGATA---------AAA------TTA-T--------TTC----GT--AA-ATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA----AT-----ATTT---TG---TA---TTCTATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------TAT-TTTGGTA-AATT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-G-CA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAAT--TAGTA-GA-TAA-TTAAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATG---TAACAT--C--------TT-TTTTTT--TGCATAAAAATTATNTTATG-A--AAG-ACAATTAAT-AA-C--TGTNTACTT-G---ATTTATGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A-----AAAAAA-AATCAATAACA--TAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAATCG----TG--TGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
Reference ( family-2723 ) : AAAAAATAA--GAA-AAA----GCTC-TAAAAAAA-A-AAG-A----AAAGCTCTAAA--AAA-TAATTGAA--AGAGC----A---A--AAAAAAA-GAAGA--------A-----AAAAATAGAGCACGAAAAAAAGAAAANAAAAGAAA---AAAAAA----AATAT-ATNT--TA---AAA-------------------AAAA-AGC---A-TG-----------C------TTNTTG------T------TA-TC----TGT------------ATG--------T--------TA--TTGTATA-------A---------AAA---GG--TCTATGAATTTCTGGGACGACCCTC--GAA-TTA----TTGATA---------AAA------TTA-T--------TTC----GT--AA-ATA--------------TC---AAA-TT---T-G-AA---------TTA-TTTT---G-CAA----AT-----ATTT---TG---TA---TTCTATTTCGATGTAATTTATTTTAAGT-A-ATA--C-G--TTTATCCNAT--------------AAGCTAAATTATTTTGT-AAGTCA----------TAT-TTTGGTA-AATT--T--TNGTTGATNCTG---------TTTTTTTATTG----ACTA-AAA------T-ATTGTA----NTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCTGA---TTA------------T------GA------------GGT------------T-TTAAG------TTAA---TA--T-------TACCTATGATG-A-TCC-A-CA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAGTCGACAAT--TAGTA-GA-TAA-TTAAACAAACAAT-CATTGTATCACT-ATGGCGATCAGATCGTTACGT-------------ATGGCATATG---TAACAT--C--------TT-TTTTTT--TGCATAAAAATTATNTTATG-A--AAG-ACAATTAAT-A--C--TGTCTACTT-G---ATTTATGT-TACCATGGTTACC---ATGAGAA-TAT-----CTGC-ATT-TTTAGTTTCATGAATGTTTCATTAGTT---ATAAT---TG--TGTTCACA----TATAAAG----T--TTAATTTTCATTAGAATTTCTATAATAGTGTTATTAAATCTTTCTTAA-ATTAA---TCAT-A-----AAAAAA-AATCAATAATAT-TAT-TTTGTTCTA-------AA--C-TTT-AAAATCTACNACAATNG----TG--TGTTTTGCCATAAAACAGTCTTGGTTTCCT-GTTCAT---ATTT-GTGTCTCCAACAATAACTTCCATCAGGGATCCAGCAGATAGTCTGCTACGGAACTCCCTGACATTTCCTNGACTAAGCT
gi|1 : AAAAAAGAACAGAA-AAAAT--GCTC-TAAAGAAA-A-AAGTAT---AAAGCTCTAAA--AAA-TAATTGAA--AGAGC----AT--ATTAAAAAAA-GAAGA--------A-----AAAAA-AGA--AAGAAATATAGAGCAC----GAAA---AAAAAG----TATAT-ATCTGTTACAAAAA-------------------AAAA-AAC---AATG-----------CCCAAGATTCTTG------T------TA-TT----TATCAGTATTGTATTATG--------T--------TA--CTGTATA-------A---------AAAT--GG--TCTATAAACTTCTGGGACGACCCTT--GAAATTA----TTGATA---------AAG------TAA-T--------TTA----TT--AT-TTA--------------TT---GAA----------AA---------TTA-T---------AA----AT-----ATTT---T-----------CTCTTTCAATGTTATT-ATTTT--GT-A-AT------------TCGAAA--------------AAGCTAAATTATTTTTT-AAGTCA----------TAT-TTTGAC--------------TTGATTTTC---------TAATTTTGTTG----ACTG-AAA------T-ATTGTA----TTTTCTGTTATTCTGTTTCAGC----TA--------A-TGAGGT------------------A------GTTA-G------GA---T-----------------------------------GGT------------T-TTAAG------TTA-----A--T-------TATTTATGATG-A-TCC-AGCA------------------AAA--C---ATCACTTAATCACTTATT
gi|1 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaAAGTTAATTAT--T--TATGA-TGA-TCCAGCAAAACAT-CACTTAATCACTTATTA-GATCAGATCATTGCATATGATTGCATATCATGGCATATG---TAACAT--C--------TT-TTTTAA--TAC-TAAAAGTAATATTAAG----TAT-ACAATTAAT-AACT--TGTACATTT-A---A-ATATGT-TACCATGGTTACA---ATGAGTA-TAT-----CTGC-ATT-ATCAGTTTTGTGAAAACTT-ATTACTT---ATAAT---TG--TGTTCACA----TTTAAAC----TCATTAATTTT--TTAGAATTTTTATCATAGTGCTATTAAA------TTGA-TTGAA---TCAT---------AAAA-AATCCCTA----------TTGTTCTA-------AAACT-TTT-AAAATCT--------------------TTTTGCCAT--AACAGTCTTGATTTCCT--TTCAT---TTTT-GCATCTTCAACAAGAACTTCCATCAGGGAagatcagatcattgcatatgattgcatatcatggcatatgtaacatcttttttaatactaaaagtaatattaagtatacaattaataacttgtacatttaaatatgttaccatggttacaatgagtatatctgcattatcagttttgtgaaaacttattacttataattgtgttcacatttaaactcattaattttttagaatttttatcatagtgctattaaattgattgaatcataaaaaatccctattgttctaaaacttttaaaatctttttgccataacagtcttgatttcctttcatttttgcatcttcaacaagaacttccatcaggga
gi|10 : aaacatcaacaacattttatgagacattaaaactgctaaagcaaaaactgttaaatcatttaaaggctgtcaatctggatatcacaagagctctttagacacacacatacatgaaacaaaccatacatatacacacagtcacacaaacatgtacatgcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttatatcatattataacatgtatgtgaaaagaaaaaaatatatatttttaaaaaaaaaaaagtaaaaaaaaaaaaagaacagaaaaaatgctctaaagaaaaaagtataaagctctaaaaaataattgaaagagcatattaaaaaaagaagaaaaaaaagaaagaaatatagagcacgaaaaaaaagtatatatctgttacaaaaaaaaaaacaatgcccaagattcttgttatttatcagtattgtattatgttactgtataaaaatggtctataaacttctgggacgacccttgaaattattgataaagtaatttattatttattgaaaattataaatattttctctttcaatgttattattttgtaattcgaaaaagctaaattattttttaagtcatattttgacttgattttctaattttgttgactgaaatattgtattttctgttattctgtttcagctaatgaggtagttaggatggttttCT-GTTG-AT---ATGTTA-AGTTTTTGAGCATTAAG----------T------AATTAGGGT-----GGT------------T-TAAAG------TTAA---T-----------TACCTATGATG-A-TCC-A-CATATATCATCTAGTCATATAAA--C---ATCATATAATCAGTTATTTTCATTCCAGTTTAAGAAGCCTACAAT--TAGTA-GA-TAG-CAAAACAAAAAATATATTGTATCCCT-ATGGCAATAAGATGATTATGT-------------ATGGCATCTG---TA----------------T-TTATTT--TGCA-AAAAA--AAATTATGTA--AAG-AAAATGAAT-AACT--TGTCAACTT-G---ATTTATGT-GACCATGGTTACC---ACAAAAATTAT-----CTAT-ATT-TTTAGTTTCATGAATATTTCATTAGTTATAATAAT---TG--TGTCCACATAATTATAAAG----T--TTGATTTCTATTACAATTTCTATAATAG---TATTAAATCTTTCATAA-ATTAT---TTATAA-----AAAAAA-AATCAA-A-----TAT-TTTGTTCTA-------AA--C-TTT-AATAGCTACAACAATCA----TGACAGTTTTGCCATAAAATA-TCTTGGTTTCCT-A---AT---ATTT-GTGTTTCCAACATTAACTTCCATCATGGATCCTGCAGACAGTCTGCTACAGAACTTCCTGATA-TTCCT-GACTAA
gi|11 : CTC-TAAAAAAA-T-AA---------AGCTCTAAA--AAA-TAACTGAA--AGAGC----A---A--AGGAAAATGGAAA--------A-----AAAAATAGAGCATGAAAAA---AAAATAAAAAAAA---TATAGT----AATATAATTT--TA---AAA-------------------A------C---A--------------C------TTGTTT------TC-----TA-TA----TGA------------ATG--------A--------TAATTTGTATAT------A---------AAA---GA--TCTATGGTTCTCTGGGACGACCCTC--TAA-TTA----TTGACATTTTTTTTTAGA------TTA-T--------GTC----ATTAAA-ATAAAATATATATGCTTTC---TCA-TTCAAT-G-AAAAAAAAAAATTATTTTT---G-CAA----GTC----AGTT---GG---TA----AGTATTTTGGTATAATTTATTTAAAATGG-ATA--CTG--CATATTCTATATTGCAATTCCCGAAAGTTAAATTATTTTGT-TTATCA----------TGT-TTTGGAA-AGTT--T--TTGTGGATGCTG---------TTTATTTATTG----TCTT-AAA------T-ATTGAA----ATTTCTATTATTCT-CTGGAGTTATATA--------G-TGTAGTTAAGTCTTTTCT-GTTG-AT---ATGTCA-AGTTT-TCA---TTA------------T------GA------------AGTAATTACAGTGG-T-TTAAG------T----------T-------TACACATGATG-A-TCCAA-CA------------------AAA--C---ATCATACACTTGGT
gi|13 : TATTGT--A--AAG-ACAATTAAT-AA-CA-TGTATA-TG-G---ATTTATGT-TACAATGGTAACAGTAATGGGAA-TAT-----CTGC-ATT-TTCAGTTTCATGACTGTTTCATTAATT---ATAAT---CA--TGTTCACA----TAAAAAAAATATG-TTAAATTTCATTAGAATTTCTCTAATAGTGTAATTAAAT------TAA-TTGAA---TCAT-A-----AAAAAA-AA------ATG--------------A-------AA-----TT-AAAATCTACTACAATGG----TG--TGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|2 : gtatAAAGAATAA--AAA-AAAAAGAGCAC-AAAAAAGA-G-AAG-A----AAAGAATGAAA--GAA-TAA--GAATAAAAGCTCTTA---A--AAAAAAA-GAAAA--------AGCTCTAAAAGTA--------AAAAGAGCAAA-AAAAGTAA---AAAAAA----AATAG-AGCTC-TA---AAAAAAGAAAAGAAAAGAAGAGAAAA-AAA---A-TG-----------T------TTTCCA------T------CATTC----TGT------------ATG--------T--------TA--ATGTATA-------A---------AAAATTGG--TCTATGGATTTCTGGGACAACCCTCAAGAA-T------TTGATA---------AGG------TT-------------------------ATG--------------TC---A----T---T-A-AA---------ATA-CT--------AA----AT-----ATT--------------TTCTGGAGCAATGTAA-TTATTTT--GT-A-A------------ACCTCAA--------------AAGCTTAATTATT---T-AAGTCATTTTGGTAAGTAT-TTTGGTATAATTTAT--TTGTGGATACTGCTAA-----TTCTTTT-TTGTAATACCA-AAAGGCTTTT-TTTGTAAGCCGTATTTGGCATTTT-TTGTTGA----TACT------G-CGTAATG---TCTTTT-T-ATTGAATAAAATATTGTACTTTCTG----TTA------------TTCTCTGGA------------G--------------T-CTAAG------TGAAGTTTC--T-------TTTCTGT--TG-A-TAT-A-TT------------------AAG--TTTAATTATGGAGTCAGTTATCTTCATTCCAGTTTAAGATGTCAACATT--T----------A-CTAA--AAGCAAT----------ACT-ATGGC------------ATGT-------------GTACC---------AACATG-T--------TT-TTTTTT--TGTAT---ATTTATTTTATGTA--AAG-ACAACTAAT-A--CCGTGTCTACTT-G---ATTTATGT-TACCATAGTTACC---ATGAGAA-TAT-----CTGA-ACT-TTTAGTTTCATAAACGTTTCATTAATT---GTGAT---TG--TGTTAACA----TATA------------------CAT-----TTTCTATAAAAGTGTTATTAAATTTTTCATAA-ATTAA---TCAT-------AAAAAA-AATCAA-AA----TAT-TTTATTCTA-------AA--CTTTT-TAAACCTACAACAATAA----TG--TGTTTTGCCTTAA---AGTCTTTGTTTCCT--TTCAT---ATTT-GTGTCTCTAACAACAACTTCCATCGGGGATCCCGCAGACAGTCAGAAACAGAACTCCCTGACATTTCCTGGACTAAG
gi|3 : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattgAAAAAATTA--GAA-AAA----GCTC-TTAAAAAG-A-AA-------AAAGCTCTAAA--A---TAATTCAA--AGAGC----A---A--AAGAAAA-TGAGA--------A-----AAAAATAGAGCATGAAAAAAAGAAAATAAAAGAAA---AAAGAATGTAAATAT-ATATG-TAT--AAA-------------------AAAA-AGC---A-TG-------------------TATT-------C------TA-TC----TGT------------ATG--------T--------TA--TTGTA-------------------------GT--TCTATGGATTTCTGGGACAACCCTC--TAA-CTAGCGTTCAATG---------AAA------TTG-T--------TTT----GT--AA-ATA--------------TC---AAA-TT---TTGTAA---------TCA-TTTT---GGTAA----GT-----ATTT---TAGTATA---TTTTATTTTGGTATAATTTATTTTAGGT-GGATA--CTG--TTTATCCTAT--------------AAGCTAAATTATTTTGT-AAGTAA----------TGT-TTTGACA-ATTT--T--TGGTTGATGCTG---------TTTTTTTATTG----CCTT-AAA------T-ATTGTA----TTTTCTGTTATTCT-CTGGAGT----TA--------G-TGAAGTT---TCTTTTCT-GTTG-AT---ATGTTA-AGTTTCAGA---TTA------------T------GA------------AGT------------T-TTAAG------TAAA---TAACTCACCGGGTACCTATGATG-A-TCC---CA------------------AAAATC---ATCATATAATCAGTTATTTTTATTCCGGTTTAAAAAGTTGACAAT--AAGTA-GA-TAACTTAAAGAAATA---TATTGTATTACT-ATGGCAATTA---TGTGACGT-------------ATGGAATCTGCATCAACATGGG--------GT-GTTTTT--TGAAAAAAAATTATGTTATG-A--A-----AATTAA--------TGTCTACTT-G---ATTTACAT-ATCCATAGTTACC---ATGAGAA-TAT-----ATGC-ATT-TTTAGTGTCATGAATG-TTCATTAATT---ATAATAAATG--TGTTTACA----AATAAAG----T--TTAATTTTCATTAAAATTTTTATTATATTGTTATTAAATATTTCTTAA-ATTAT---TCAT------------A-AATTTTTTTTAA-TAT-TTTGTTCTA-------AA--C-TTT-AGAATCTACAACAATCATGATTG--TGTTTTGCCATAAAA-AGTCTTGGTTTCCTAGCTATT---ATTT-GTGTCTCCACCAACAATTTCCATC-------------ATA-TCTGCTGCAGAACTACCTGACATTTCCTTGACTAAt
gi|4 : AAGAAAAAA--AAATAAA----GCTC-TAAAAAAATATAAG-AGCACAAAG---TAAAGAAAA-AAAATGTA--AGACC----ATTAA--AAAAAAA-GAAGACTCAAAATA-----AAAAATAAAGCTCTAAAAAAAAAGAAAGAAATAAGGCTAAAAAA----ACTCT-AAA----A---AAG-------------------AAAATAGCCCAA-TG-----------T------TTTTGG------TATTATTTA-TC----TGT------------ATG--------TTGTTATGTTA--TTGTATATTTGTATA---------AAA---GAGTTTTGTAAACTTCTGGGATGATCCTT--GAAATTT----TTGATA---------GA--------------------TT------------ATA--------------TC---A---TT---A-G-AA---------ATA-AT--------AA----AT-----GTTT---T-----------CTCTTTCAATGAAATT-ATTTT--GT-A-AT------------TCCCA---------------AAGCTAAATTATTCTGT-AAGTCA----------TAT-TTTAGTA-AATT--T----GTTTGTTCTA---------TTTTTT-ATTA----ATTATAAA------T--TTGTA----TTTTCTGTTATTCT-CTGGAAT----TA--------G-TGAATTT---TTTTTTCT-GTTG-AT---ATGTTA-AGTTCCTGA---TTA------------T------GAGGTAATTAGGGTGGT------------T-TTAAG------TTA-----A--T-------TACCTATGATG-ATTCT-G-CA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCCAGTTTAAGAAATCA--AGT--TAGTA-GATTAA-T--AATTAACAAT-CATTTTATCACC-ATGGTGATTAGATCTTTACGC-------------ATGGCATATG---TAACAC--C--------att
gi|5 : acaacaaaaacatatgagcacaacaatatatatgactttaacacattaaaactgtgaaagaataaattgataaattatttagcagctgtcaatctgggcttcacaagaactctttggacacacatatacacaaaaaaaacatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatacaaaaagaaaagaggattattgtactaattgtactaatagcatgtttttgaaaataaaattaaacaaaaattatatatatataaaaataagagagcattaaaaaaatatgaaaaaaagctctaAAAAAATAA--TTA-AAA----GGGCATAAAAAAG-A-AAA-T----AAAGCTCTAAA--AAAATAATTAAA--AGAGC----A---T--NNNNNNN-NNNNN--------N-----NNNNNNNNNNNNNNNNNNNNTGAACA-----GAGC---ACAAAA----CATATCATAT--CA---TAT-------------------AGTA-CTT---A-TGGCCTTATTGGTC------TTCTTG------T------TA-AA----TAT------------ATA--------T--------TA--TTGTATA-------A---------AAAT--GG--TCTATAAATTTCTGGGACGACCCTC--AAC-TTA----CTGAAA---------AAA------AGAGT--------TTCAACTGC--AA-CTC--------------CC---AAAACC---T-A-AA---------TTA-TTTT-----CAA----AT-----ATTT---T----------TCTAT----ATATATTCTTTTTAAAGT-A-ATAA-C-AGTTTTACCAAATC-------------AAG-TAATTTATTTT-T-GG---A----------TAC-TAGGGTA---TT--C--TACTTAA---------------------ATTG----ATTA-AAA------T--TTGTA------TTCTGTTATTCT-CTGGAGT----AA--------AATAAAGTT---TCCTTTCTTATTG-AT---ATGTAA-AGTTTCTGA---TTA------------T------GA------------GGT------------TATTAAGGTTTTATTAAAT-TAA-T-------TACCTATGAAG-G-TCC-G-CA------------------AAA--C---ATCACATAATCAGTTATTTTCATTCTATTTTAAGAAATTGACAAT--TTGTA-GA-CAA-TT-AACAAACAAT-TATTGTATCGCT-ATGGTAATCAGATGGTTAC---------------ACGTTACATG---TACCAT--CTTATGTTGTT-TTTTTT--TGCATCCAGA-TATTTTATG-AAGAGG-ACAATTAAT-A----------ACTT-GGATACCTGTAT-T-CT---GTTACC---ATAACAA-TAT-----CTGC-ATTATTTAGTTT-A--------TTATTGGTT-------T---T---TTTTTACA----TATTAAG----T--TT
gi|6 : aatatatgaaaagaaaattactgtttttgtagttattgttctgataacatgtatttgaaaaaaaaaaaaaaaaaaaaaaaaaatgaagctctaaaaataattgaaaaagcacaaaaaagaaaacataaagctctaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGACAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAAATG----TG--TGTTTTACCATAAAACAGTCTTGGTTTCTT--TACATTAAATTTTGTGTCTTCAACAATACCTTCCATCAGGGATCCAGCAAATAGTCTGCTACAAAACTCCCCGACATTCCCCCG-CCAAACTtc
gi|7 : AAAAAAGAA--GAA-AAA-----------AAGAAA-A-AAG-A----AAGG-TCTAAA--AAA-TAAagttgaaaatgttatcctaaaagcaatatgtgatatgttttgtgcttctggacaaaatactgacctgaataaagttcagtagaacatacaaaacatttcagtatttttatgcagcatacattttagttgctacccgatgtctaagtttgttgcttttatattcactagaactctgaatttgaacaaagacattgctgatgtgatagtcaacagttaatctcagatccaaaaatttaaaatttctctgacattctgctgttttttacaagttttctaaaagttgccggtgacactgtcaattatttttattccccccctcccccctcttactttctccagttaataccaaccatgcagtcttacatttagtaagcacagtaagcgttgttctaagcttcagtgctacataccatttgtataccaaacatattgacaaacatgttgtcatttttatatcatcccttacccgttttaaactcagtataacccctagcaatatgtaaatttgaaacgagtacccatacataagaatgcaggttgttaaactgtgatatgtatttcttttatagaatgatttccactgtttaaataaattttcttaaatatatcattcatttatttttaaatattac
gi|7 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaAAAAAATAA----A-AGA----GCAT-AAAAGAGA-A-AAC-AT---AAAACTCTAAA--AAA-TAATTGAA--AGAAC----A---G--AAAAAAA-GAAAA--------A-----AA----------------AAAGAAATTAACAGGCA---CAAAAA----ATTAC-ATGT--TT---GGT-------------------A------CTT-A-TGGC---------C------TTATTGGGTGTCT------TG-TC----TGT------------ATG--------T--------TA--CTGT---------------------AA---GG--TCTAACAATTTCATGGACAACTCTC--AAA-TTA----TTAATA---------AAATGAGACTTA-TGTTTTCTCTTC-----C--AATATAAT------------TCCCAAAA-CC---T-A-AA---------TTA-TTTTCAAG-CAATTTCATTATAGATCTAAATA---TATATTTTTATTTCT-TGTTATTT-TTCAAAGA-A-ATAATC-AGTTTTACCCAAT--------------CAACT------TTTTATCAAGTCATT--------TATATTTGG-A-AA-C--T--GGGTTAATCCAG------------TTAAATTG----ACTA-AAA------T--TTGTA----ATCTCTGTTATTCT-CTGGAGT------------------AAATA---T-TTTTCT-GTTG-AT---AAGTAA-AGCTTCTGA---TTAAGAGGTAATTAGT------GT------------GGT------------T-TTAAC------TTA-----A--T-------TACCTATGATGTG-TCT-G-CA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATTCACAAT--TAGTA-GA-TAA-TT-AACAAACAAT-TATTGTGTTGCT-ATGGTGATCAGATAGTTATAT-------------ATTACATA-----TAACAT--C--------TTGTTTTTTTGTGCATACAAA-TATTTTATGTA--GAGAACAATTAAT-A----------ACTTGG---A--TATGTGTATTAT-GTTGCC---ATAAGTA-TATCAGACCTGCTTTT-TTTAGTTTAATGAATGTTTCATTAGTT---ATAAT---TGCTTTTTTACA----TATAA-----------GATTTTCATTaagagcataaaagagaaaacataaaactctaaaaaataattgaaagaacagaaaaaaagaaaaaaaaaagaaattaacaggcacaaaaaattacatgtttggtacttatggccttattgggtgtcttgtctgtatgttactgtaaggtctaacaatttcatggacaactctcaaattattaataaaatgagacttatgttttctcttccaatataattcccaaaacctaaattattttcaagcaatttcattatagatctaaatatatatttttatttcttgttatttttcaaagaaataatcagttttacccaatcaactttttatcaagtcatttatatttggaaactgggttaatccagttaaattgactaaaatttgtaatctctgttattctctggagtaaatatttttctgttgataagtaaagcttctgattaagaggtaattagtgtggttttaacttaattacctatgatgtgtctgcaaaacatcacatcatcagttattttcattccagtttaagaaattcacaattagtagataattaacaaacaattattgtgttgctatggtgatcagatagttatatattacatataacatcttgtttttttgtgcatacaaatattttatgtagagaacaattaataacttggatatgtgtattatgttgccataagtatatcagacctgctttttttagtttaatgaatgtttcattagttataattgcttttttacatataagattttcatt
gi|8 : tagttttgttcttatagcatgtaaaaagctcttttaataaaaaaaaaagaagaaaaaaagaaaaaagaaaggtctT-AAAATCTACTACAATGG----TG--TGTTTTGCCATAAAACAGTCTTGGTTTTC--GTTCAT---ATTT-GTGTCTTCAATAATAATACTCATCAAGGATCCAGCAGATAGTCTGCTACGAATCTCCCTGACATTTCTTAGACTAA
gi|9 : ----A---A--AAAAAAA-AAAAA--------A-----AAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTA---AAAAAA----AA---------------AAA-------------------AAGA-AGCTC-A-TA-----------A------TTTTTG------T------TA-TTTATTTGT------------ATGTTATTTTGT--------TA--TTGTATA-------ATTGTATAAAAAA---GT--TTTATAAACTTCTGGGACGACCCTC--GAAAGTA----TTGATA---------ACA------TAA-T--------ATC----AT--AA-A---------------------AAA-T--------AA---------T-------------AA----AT-----ATT-----G---T------CTATTTCATTGTAATT-ATTTT--GT-A-----------TTTATGTAA----------------AGCTTAACTATTTTGT-AA-TCA----------TAT-TTTCGTA-AATT--TATTTGTGGATACTGGATATTCTATTTTTTTATTG----ACTATAAA------TGATT--------TTTTTGTTATTCT-CTGGAAA----TATAAAATAAG-TGAAGTT---TCTTTTCT-GTTG-AT---ATAATA-AGTTTCTGA---TTA------------T------GA------------GGTAATTAGGGTGGTT-TTAAG------TTAA---T-----------TGCCTATGATG-A-TCCCA-CA------------------AAA--C---ATCACATCATCAGTTATTTTCATTCCAGTTTAAGAAATC--CAGTTATAGTA-GATTAT-TTAAACAAACAAT-CATTGTATCACT-ACAGCGATTAGGTCATTACAG-------------ATGGCAAATG---TAA-AT--C--------TT-TTTTTA--TAT-TAAAAGTCATATTATGAA--AAG-ACAATTAATAA--CA-TGTATATTT-G---ATCTATAT-TACCAttgaaaagtttatcctcgccgctactggacaaattctgatctgaataaagttcagtaaaacaaacaagtattttcatgcagtatacattttagttgttacccaatgcgtgtgtttgttgctgtcatattcacataaacctataatttggacaaagacattgctgttgtgatagtggatggtaaatcttaaatccaagaatttgaaaattctctgacattttgctgttttctgacagttacccccgactttgaattatttgaaaatttcctccataactttcccctgttaatacctgcaaccatttagtctttcacttggtaagcacagttttagcatgttctgagctttagtgctacacaccataattattatcattttgtcatttttctatcaacccttgtcccttggactaatgataaccctcgcaacatgtaaacggtatgcaagaattcagaatgcaggttgctaaactattatttgtatttctttattagaagcatttcccttgtctaaatgaactttctaaattatatattatttggtactatttgataatatcaca
gi|9 : aaTAAATCTTTTTTTATATTAAAAGTCAT-ATTATGAAAAGACAATTAATAACATGTATATTTGATCTATATTACCAA--C-TTTTAAAATCTACTACAAATG----TG--TGTTTTACCATAAAACAGTCTTGGTTTC----TTTAC---ATTacttttaaaatctactacaaatgtgtgttttaccataaaacagtcttggtttctttacattaaattt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACAAAATTATTTGAGCACAACAATGATATGAGACTTACACATCAAAACGGTGAAAGAATAAACTGTTGAATCATTAAACAGCTGTCAATCTGGACATCACAAGAGGATTTTTTTTGACACACACATACACATAAATACACAAAAACATACATATGCTCACGCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACAAAAAAAAAAAAAAAACAGCTAAAAAAAAAAAAAAGAAGCTCATAA
Unaligned ( gi|14 ): AAAGCATTGAAGGCTGTCAATCTAAACATCACAATTTAAGAATTCTGTGGACACACACATACACATGCAAATACAAACACATTCATATACGTGTCGCATACATA
Unaligned ( gi|15 ): AACATTATATGAGAATTGATGAAACATTATATGAGAAAACAACACTGTTGAATTACTTTAAGGCTGTCAATCTGGACATCACAA
Unaligned ( gi|16 ): CAACATTGTATGAGCACAACATTATATGAGAAGTGATGA